1 Asymmetric Organocatalysis: a New Stream in Organic Synthesis
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Thiourea Derivatives of Tröger's Base
General Papers ARKIVOC 2009 (xiv) 124-134 Thiourea derivatives of Tröger’s base: synthesis, enantioseparation and evaluation in organocatalysis of Michael addition to nitroolefins Delphine Didiera and Sergey Sergeyeva,b* a Université Libre de Bruxelles (ULB), Laboratoire de Chimie des Polymères, CP 206/01, Boulevard du Triomphe, 1050 Brussels, Belgium b University of Antwerp, Department of Chemistry, Groenenborgerlaan 171, 2020 Antwerp, Belgium E-mail: [email protected] Abstract The catalytic activity of racemic thiourea derivatives of Tröger’s base (±)-2–4 in Michael additions of malonate derivatives to trans-β-nitrostyrene was studied. Due to the low basicity of Tröger’s base, the outcome of the addition reactions was strongly dependent on the pKa of the nucleophile. Thiourea catalysts (±)-2, 3 were resolved on the chiral stationary phase Whelk O1. Unfortunately, enantiopure catalysts 2 and 3 showed no stereoselectivity in the Michael addition. Keywords: Tröger’s base, thiourea, Michael addition, catalysis, WhelkO1 Introduction In the recent years, asymmetric organocatalysis has emerged as a competitive, environment- friendlier alternative to catalysis with transition metal complexes. While simple molecules such as derivatives of proline have been receiving a great deal of attention due to their availability, considerable effort has been directed towards searching for novel chiral scaffolds for asymmetric organocatalysis.1 Tröger’s base 1 is a chiral diamine bearing two stereogenic bridge-head nitrogen atoms (Figure 1). The two aromatic rings fused to the central bicyclic framework are almost perpendicular to each other, creating a rigid, V-shaped C2-symmetrical molecular scaffold with a distance of ca. 1nm between the two extremities.2 Due to its chirality and relatively rigid geometry, one would intuitively expect a considerable interest for analogues of Tröger’s base in the field of asymmetric synthesis and catalysis. -
Organic Synthesis: Handout 1
Prof Tim Donohoe: Strategies and Taccs in Organic Synthesis: Handout 1 Organic Synthesis III 8 x 1hr Lectures: Michaelmas Term Weeks 5-8 2016 Mon at 10am; Wed at 9am Dyson Perrins lecture theatre Copies of this handout will be available at hEp://donohoe.chem.ox.ac.uk/page16/index.html 1/33 Prof Tim Donohoe: Strategies and Taccs in Organic Synthesis: Handout 1 Organic Synthesis III Synopsis 1) Introduc5on to synthesis: (i) Why do we want to synthesise molecules- what sort of molecules do we need to make? (ii) What aspects of selecvity do we need to accomplish a good synthesis (chemo-, regio- and stereoselecvity)? (iii) Protecng group chemistry is central to any syntheAc effort (examples and principles) (iv) What is the perfect synthesis (performed in industry versus academia)? 2) The chiral pool: where does absolute stereochemistry come from? 3) Retrosynthesis- learning to think backwards (revision from first and second year). Importance of making C-C bonds and controlling oxidaAon state. Umpolung 4) Some problems to think about 5) Examples of retrosynthesis/synthesis in ac5on. 6) Ten handy hints for retrosynthesis 7) Soluons to the problems Recommended books: General: Organic Chemistry (Warren et al) Organic Synthesis: The DisconnecRon Approach (S. Warren) Classics in Total Synthesis Volumes I and II (K. C. Nicolaou) The Logic of Chemical Synthesis (E. J. Corey) 2/33 View Article Online / Journal Homepage / Table of Contents for this issue 619461 Strychniqae and BYucine. Pavt XLII. 903 Prof Tim Donohoe: Strategies and Taccs in Organic Synthesis: Handout 1 (i) Why do we want to synthesise complex molecules? Isolated from the Pacific Yew in 1962 Prescribed for prostate, breast and ovarian cancer Unique mode of acRon 1x 100 year old tree = 300 mg Taxol Isolated in 1818- poisonous Stuctural elucidaon took R. -
Artificial Intelligence for Computer-Aided Synthesis
ORIGINAL RESEARCH published: 04 August 2020 doi: 10.3389/fceng.2020.00005 Artificial Intelligence for Computer-Aided Synthesis In Flow: Analysis and Selection of Reaction Components Pieter P. Plehiers 1,2, Connor W. Coley 1, Hanyu Gao 1, Florence H. Vermeire 1, Maarten R. Dobbelaere 2, Christian V. Stevens 3, Kevin M. Van Geem 2* and William H. Green 1* 1 Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA, United States, 2 Laboratory for Chemical Technology, Department of Materials, Textiles and Chemical Engineering, Ghent University, Ghent, Belgium, 3 SynBioC Research Group, Department of Green Chemistry and Technology, Faculty of Bioscience Engineering, Ghent Edited by: University, Ghent, Belgium René Schenkendorf, Technische Universitat Braunschweig, Germany Computer-aided synthesis has received much attention in recent years. It is a challenging Reviewed by: topic in itself, due to the high dimensionality of chemical and reaction space. It becomes Richard Anthony Bourne, even more challenging when the aim is to suggest syntheses that can be performed in University of Leeds, United Kingdom Alexei Lapkin, continuous flow. Though continuous flow offers many potential benefits, not all reactions University of Cambridge, are suited to be operated continuously. In this work, three machine learning models United Kingdom have been developed to provide an assessment of whether a given reaction may benefit *Correspondence: from continuous operation, what the likelihood of success in continuous flow is for a Kevin M. Van Geem [email protected] certain set of reaction components (i.e., reactants, reagents, solvents, catalysts, and William H. Green products) and, if the likelihood of success is low, which alternative reaction components [email protected] can be considered. -
Part I Principles of Enzyme Catalysis
j1 Part I Principles of Enzyme Catalysis Enzyme Catalysis in Organic Synthesis, Third Edition. Edited by Karlheinz Drauz, Harald Groger,€ and Oliver May. Ó 2012 Wiley-VCH Verlag GmbH & Co. KGaA. Published 2012 by Wiley-VCH Verlag GmbH & Co. KGaA. j3 1 Introduction – Principles and Historical Landmarks of Enzyme Catalysis in Organic Synthesis Harald Gr€oger and Yasuhisa Asano 1.1 General Remarks Enzyme catalysis in organic synthesis – behind this term stands a technology that today is widely recognized as a first choice opportunity in the preparation of a wide range of chemical compounds. Notably, this is true not only for academic syntheses but also for industrial-scale applications [1]. For numerous molecules the synthetic routes based on enzyme catalysis have turned out to be competitive (and often superior!) compared with classic chemicalaswellaschemocatalyticsynthetic approaches. Thus, enzymatic catalysis is increasingly recognized by organic chemists in both academia and industry as an attractive synthetic tool besides the traditional organic disciplines such as classic synthesis, metal catalysis, and organocatalysis [2]. By means of enzymes a broad range of transformations relevant in organic chemistry can be catalyzed, including, for example, redox reactions, carbon–carbon bond forming reactions, and hydrolytic reactions. Nonetheless, for a long time enzyme catalysis was not realized as a first choice option in organic synthesis. Organic chemists did not use enzymes as catalysts for their envisioned syntheses because of observed (or assumed) disadvantages such as narrow substrate range, limited stability of enzymes under organic reaction conditions, low efficiency when using wild-type strains, and diluted substrate and product solutions, thus leading to non-satisfactory volumetric productivities. -
Retrosynthetic Design of Metabolic Pathways to Chemicals Not Found in Nature
Retrosynthetic design of metabolic pathways to chemicals not found in nature The MIT Faculty has made this article openly available. Please share how this access benefits you. Your story matters. Citation Lin, Geng-Min et al. "Retrosynthetic design of metabolic pathways to chemicals not found in nature." Biology 14 (April 2019): 82-107 © 2019 The Authors As Published http://dx.doi.org/10.1016/J.COISB.2019.04.004 Publisher Elsevier BV Version Final published version Citable link https://hdl.handle.net/1721.1/125854 Terms of Use Creative Commons Attribution-NonCommercial-NoDerivs License Detailed Terms http://creativecommons.org/licenses/by-nc-nd/4.0/ Available online at www.sciencedirect.com Current Opinion in ScienceDirect Systems Biology Retrosynthetic design of metabolic pathways to chemicals not found in nature Geng-Min Lin1, Robert Warden-Rothman1 and Christopher A. Voigt Abstract simpler chemical building blocks derived from pe- Biology produces a universe of chemicals whose precision and troleum or other sources [1]. Chemicals that are large complexity is the envy of chemists. Over the last 30 years, the and complex with many functional groups and ster- expansive field of metabolic engineering has many successes eocenters have required Herculean efforts to build; in optimizing the overproduction of metabolites of industrial in- for example, halichondrin B has 32 stereocenters (4 terest, including moving natural product pathways to production billion isomers) and requires a sprawling total syn- hosts (e.g., plants to yeast). However, there are stunningly few thesis whose longest linear path is 47 reactions [2]. examples where enzymes are artificially combined to make a Solutions have been found to incredibly challenging chemical that is not found somewhere in nature. -
Organic Synthesis: New Vistas in the Brazilian Landscape
Anais da Academia Brasileira de Ciências (2018) 90(1 Suppl. 1): 895-941 (Annals of the Brazilian Academy of Sciences) Printed version ISSN 0001-3765 / Online version ISSN 1678-2690 http://dx.doi.org/10.1590/0001-3765201820170564 www.scielo.br/aabc | www.fb.com/aabcjournal Organic Synthesis: New Vistas in the Brazilian Landscape RONALDO A. PILLI and FRANCISCO F. DE ASSIS Instituto de Química, UNICAMP, Rua José de Castro, s/n, 13083-970 Campinas, SP, Brazil Manuscript received on September 11, 2017; accepted for publication on December 29, 2017 ABSTRACT In this overview, we present our analysis of the future of organic synthesis in Brazil, a highly innovative and strategic area of research which underpins our social and economical progress. Several different topics (automation, catalysis, green chemistry, scalability, methodological studies and total syntheses) were considered to hold promise for the future advance of chemical sciences in Brazil. In order to put it in perspective, contributions from Brazilian laboratories were selected by the citations received and importance for the field and were benchmarked against some of the most important results disclosed by authors worldwide. The picture that emerged reveals a thriving area of research, with new generations of well-trained and productive chemists engaged particularly in the areas of green chemistry and catalysis. In order to fulfill the promise of delivering more efficient and sustainable processes, an integration of the academic and industrial research agendas is to be expected. On the other hand, academic research in automation of chemical processes, a well established topic of investigation in industrial settings, has just recently began in Brazil and more academic laboratories are lining up to contribute. -
Organocatalytic Cyclopropanation of (E)-Dec-2-Enal: Synthesis, Spectral Analysis and Mechanistic Understanding
Organocatalytic Cyclopropanation of (E)-Dec-2-enal: Synthesis, Spectral Analysis and Mechanistic Understanding. Marta Meazza, Agnieszka Kowalczuk, Sarah Watkins, Simon Holland, Thomas A. 5 Logothetis, Ramon Rios Faculty of Natural & Environmental Sciences, Department of Chemistry, University of Southampton, Highfield Campus, Southampton, SO17 1BJ, United Kingdom In memoriam Klaus Burger ABSTRACT 10 An undergraduate experiment combining synthesis, NMR analysis and mechanistic understanding is reported. The students perform an organocatalyzed cyclopropanation reaction of (E)-dec-2-enal and are then required to determine the diastereoselectivity and assign the relative configuration of each product using NMR spectroscopy. 15 ABSTRACT GRAPHIC Journal of Chemical Education 8/20/18 Page 1 of 21 KEYWORDS Upper Division Undergraduate, Organic Chemistry, Hands-On Learning/Manipulatives, Inquiry-Based/Discovery Learning, Asymmetric Synthesis, 20 NMR Spectroscopy, Diastereomers. BACKGROUND In recent years, catalysis has had a huge impact on the nature of organic synthesis. With the increasing emphasis on green chemistry and sustainable processes, the development of new, highly enantioselective methodologies for the 25 synthesis of new, 3D scaffolds has become of paramount importance for organic chemists. A clear example is the 2001 Nobel Prize awarded to K. B. Sharpless, R. Noyori and W. S. Knowles for their contributions to this field. A further step towards the development of greener methodologies was made in 2000 with the “renaissance” of organocatalysis by the pioneering works of B. List1 and D.W.C. 30 MacMillan.2 List et al.1 developed the first intermolecular enantioselective aldol reaction catalyzed by proline through enamine activation, while MacMillan and coworkers2 developed the first organocatalyzed enantioselective Diels-Alder reaction through iminium activation. -
Highly Enantioselective Synthesis of Γ-, Δ-, and E-Chiral 1-Alkanols Via Zr-Catalyzed Asymmetric Carboalumination of Alkenes (ZACA)–Cu- Or Pd-Catalyzed Cross-Coupling
Highly enantioselective synthesis of γ-, δ-, and e-chiral 1-alkanols via Zr-catalyzed asymmetric carboalumination of alkenes (ZACA)–Cu- or Pd-catalyzed cross-coupling Shiqing Xu, Akimichi Oda, Hirofumi Kamada, and Ei-ichi Negishi1 Department of Chemistry, Purdue University, West Lafayette, IN 47907 Edited by Chi-Huey Wong, Academia Sinica, Taipei, Taiwan, and approved May 2, 2014 (received for review January 21, 2014) Despite recent advances of asymmetric synthesis, the preparation shown in Schemes 1 and 2 illustrate the versatility of ZACA of enantiomerically pure (≥99% ee) compounds remains a chal- represented by the organoaluminum functionality of the ini- lenge in modern organic chemistry. We report here a strategy tially formed ZACA products. Introduction of the OH group for a highly enantioselective (≥99% ee) and catalytic synthesis by oxidation of initially formed alkylalane intermediates in of various γ- and more-remotely chiral alcohols from terminal Scheme 2 is based on two considerations: (i) the proximity of the alkenes via Zr-catalyzed asymmetric carboalumination of alkenes OH group to a stereogenic carbon center is highly desirable for (ZACA reaction)–Cu- or Pd-catalyzed cross-coupling. ZACA–in situ lipase-catalyzed acetylation to provide ultrapure (≥99% ee) di- oxidation of tert-butyldimethylsilyl (TBS)-protected ω-alkene-1-ols functional intermediates, and (ii) the versatile OH group can R S α ω produced both ( )- and ( )- , -dioxyfunctional intermediates (3) be further transformed to a wide range of carbon groups by – ee ≥ ee in 80 88% , which were readily purified to the 99% level tosylation or iodination followed by Cu- or Pd-catalyzed cross- by lipase-catalyzed acetylation through exploitation of their high α ω coupling. -
Asymmetric Organocatalysis Revisited: Taming Hydrindanes with Jørgensen–Hayashi Catalyst
SYNTHESIS0039-78811437-210X Georg Thieme Verlag Stuttgart · New York 2019, 51, 1123–1134 feature 1123 en Syn thesis Y. Stöckl et al. Feature Asymmetric Organocatalysis Revisited: Taming Hydrindanes with Jørgensen–Hayashi Catalyst Yannick Stöckl O Michael addition Wolfgang Frey O Aldol [4+2] cat. 1 H H H Johannes Lang N R H Birgit Claasen + H Angelika Baro O O O O O H H Sabine Laschat* 0000-0002-1488-3903 R R O R O O Institut für Organische Chemie, Universität Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany [email protected] Published as part of the 50 Years SYNTHESIS – Golden Anniversary Issue Received: 12.11.2018 amples are amaminol A (2),9 the tricyclic unit of Accepted: 15.11.2018 ikarugamycin (3),10 or the CD ring unit of deoxycholic acid Published online: 14.12.2018 11 DOI: 10.1055/s-0037-1610409; Art ID: ss-2018-z0760-fa (4) (Figure 1). License terms: H Abstract The organocatalytic Michael reaction of easily available 1-cy- clopentene-1-carbaldehyde and 1,3-dicarbonyl compounds led to cy- H clopentanecarbaldehydes on a gram scale with low catalyst loading (2 1 (hydrindane) mol%) and high enantioselectivity. The synthetic potential of 4-acyl- H2N hexahydroindenones from intramolecular aldol condensation was OH demonstrated by Diels–Alder reaction to a tetracyclic derivative with seven stereogenic centers. The diastereofacial preference of the tetra- 2 (amaminol A) H H cyclic product was confirmed by DFT calculations. The described reac- R1 tion sequence is characterized by few redox-economic steps and high degree of molecular complexity. -
Complex Organic Synthesis: Structure, Properties, And/Or 5 Function? 6
Essays 1 DOI: 10.1002/ijch.201800016 2 3 4 Complex Organic Synthesis: Structure, Properties, and/or 5 Function? 6 7 [a] 8 George M. Whitesides 9 10 In 1956 – the year R. B. Woodward’s famous Perspective[1] addition to performing research, university research groups 11 was published – I was a senior in high school. The next year, have the important obligation to teach students what they need 12 when I started college and joined a research group, it was still to know for their intended careers. Is the training that students 13 all the (I thought, hopefully and in anticipation, “we”) organic currently receive in organic synthesis the one that best 14 chemistry graduate students talked about. The vision was so prepares them for their future (and which may possibly be 15 astonishing, and the ambition so grand, that it was transfixing. entirely different than their research director’s past)? 16 It clearly marked the transformation of the field of synthesis 17 from one state into something entirely different – one marked 18 by disciplined, elegant, complexity. I never actually met “Organic Synthesis:” What Is It? 19 Woodward (other than secondarily, through one of his 20 postdocs, to let me know of his intense displeasure at my use The phrase “Organic Synthesis” is a complicated one, and 21 of his IR spectrometers in the middle of the night), but I did means different things to different people. It is always risky, 22 go to Woodward group seminars, where I learned humility, as semantically, to use a single phrase to describe many different 23 well as new definitions of “endurance” and bladder control things. -
Enamine-Based Organocatalysis with Proline And
Acc. Chem. Res. 2004, 37, 580-591 carbon bond in a stereospecific fashion. These same Enamine-Based Organocatalysis features are typically absent in traditional synthetic asym- with Proline and Diamines: The metric aldol methodologies.2,3 Our ideal synthetic catalyst would be one that could Development of Direct Catalytic generate enamines from any number of aldehydes or ketones and then direct bond-forming reactions with a Asymmetric Aldol, Mannich, wide variety of electrophiles beyond the carbonyl elec- Michael, and Diels-Alder trophiles of the aldol reaction. Further, since these cata- lysts also generate imines as part of their reaction mech- Reactions anism, electrophilic catalysis might facilitate diverse WOLFGANG NOTZ, FUJIE TANAKA, AND reactions with nucleophiles. Such an antibody might be termed an ªopen-active siteº catalytic antibody. Indeed, CARLOS F. BARBAS, III* The Skaggs Institute for Chemical Biology and the we were able to demonstrate that our aldolase antibodies Departments of Chemistry and Molecular Biology, The could catalyze not only a wide range of intra- and Scripps Research Institute, 10550 North Torrey Pines Road, intermolecular aldol reactions but also decarboxylation La Jolla, California 92037 reactions via imine catalysis and certain Michael reactions Received February 2, 2004 as well.2 Significantly for what would become our studies in organocatalysis, in our search for ªopen-active siteº ABSTRACT antibody catalysis, we studied the potential of aldolase Enamines and imines have long been recognized as key intermedi- antibodies to catalyze the addition of ketones to nitrosty- ates in enzyme catalysis, particularly within a class of enzymes renes in Michael reactions, the addition of ketones to organic chemists would very much like to emulate, the aldolases. -
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