Of a Localised Centromere in Their Chromosomes Are Certain Alg
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Diversity in the Organization of Centromeric Chromatin
Available online at www.sciencedirect.com ScienceDirect Diversity in the organization of centromeric chromatin 1 Florian A Steiner and Steven Henikoff Centromeric chromatin is distinguished primarily by lacking. In most species, cenH3 nucleosomes assemble nucleosomes containing the histone variant cenH3, which on particular families of tandemly repetitive satellite organizes the kinetochore that links the chromosome to the DNA, and the intractability of long satellite repeat arrays spindle apparatus. Whereas budding yeast have simple ‘point’ has greatly hindered the analysis of centromeric chroma- centromeres with single cenH3 nucleosomes, and fission yeast tin. Recent studies have begun to shed light on these have ‘regional’ centromeres without obvious sequence enigmatic regions of chromosomes, in part through specificity, the centromeres of most organisms are embedded improvements in sequencing technologies and in part in highly repetitive ‘satellite’ DNA. Recent studies have revealed through analysis of model systems that circumvent the a remarkable diversity in centromere chromatin organization challenges presented by the repeat-richness of most among different lineages, including some that have lost cenH3 higher eukaryotic centromeres. The emerging picture altogether. We review recent progress in understanding point, shows that cenH3 is incorporated into well-positioned regional and satellite centromeres, as well as less well-studied nucleosomes at centromeres that are distinct from canon- centromere types, such as holocentromeres. -
5885.Full.Pdf
Research Article 5885 Assembly of additional heterochromatin distinct from centromere-kinetochore chromatin is required for de novo formation of human artificial chromosome Hiroshi Nakashima1,2,3, Megumi Nakano1,*, Ryoko Ohnishi1, Yasushi Hiraoka4, Yasufumi Kaneda2, Akio Sugino1,3 and Hiroshi Masumoto1,*,‡ 1Division of Biological Science, Graduate School of Science, Nagoya University, Chikusa-ku, Nagoya 464-8602, Japan 2Division of Gene Therapy Science, Osaka University Graduate School of Medicine, 2-2 Yamada-oka, Suita, Osaka 565-0871, Japan 3Laboratories for Biomolecular Networks, Graduate School of Frontier Biosciences, Osaka University, 1-3 Yamada-oka, Suita, Osaka 565-0871, Japan 4Kansai Advanced Research Center, National Institute of Information and Communications Technology, 588-2 Iwaoka, Iwaoka-cho, Nishi-ku, Kobe 651-2492, Japan *Present address: Laboratory of Biosystems and Cancer, National Cancer Institute, National Institutes of Health, Bldg. 37, Rm 5040, 9000 Rockville Pike, Bethesda, MD 20892, USA ‡Author for correspondence (e-mail: [email protected]) Accepted 20 September 2005 Journal of Cell Science 118, 5885-5898 Published by The Company of Biologists 2005 doi:10.1242/jcs.02702 Summary Alpha-satellite (alphoid) DNA is necessary for de novo arms. However, on the stable HAC, chromatin formation of human artificial chromosomes (HACs) in immunoprecipitation analysis showed that HP1␣ and human cultured cells. To investigate the relationship trimethyl histone H3-K9 were enriched at the non- among centromeric, transcriptionally -
Chromatid Cohesion During Mitosis: Lessons from Meiosis
Journal of Cell Science 112, 2607-2613 (1999) 2607 Printed in Great Britain © The Company of Biologists Limited 1999 JCS0467 COMMENTARY Chromatid cohesion during mitosis: lessons from meiosis Conly L. Rieder1,2,3 and Richard Cole1 1Wadsworth Center, New York State Dept of Health, PO Box 509, Albany, New York 12201-0509, USA 2Department of Biomedical Sciences, State University of New York, Albany, New York 12222, USA 3Marine Biology Laboratory, Woods Hole, MA 02543-1015, USA *Author for correspondence (e-mail: [email protected]) Published on WWW 21 July 1999 SUMMARY The equal distribution of chromosomes during mitosis and temporally separated under various conditions. Finally, we meiosis is dependent on the maintenance of sister demonstrate that in the absence of a centromeric tether, chromatid cohesion. In this commentary we review the arm cohesion is sufficient to maintain chromatid cohesion evidence that, during meiosis, the mechanism underlying during prometaphase of mitosis. This finding provides a the cohesion of chromatids along their arms is different straightforward explanation for why mutants in proteins from that responsible for cohesion in the centromere responsible for centromeric cohesion in Drosophila (e.g. region. We then argue that the chromatids on a mitotic ord, mei-s332) disrupt meiosis but not mitosis. chromosome are also tethered along their arms and in the centromere by different mechanisms, and that the Key words: Sister-chromatid cohesion, Mitosis, Meiosis, Anaphase functional action of these two mechanisms can be onset INTRODUCTION (related to the fission yeast Cut1P; Ciosk et al., 1998). When Pds1 is destroyed Esp1 is liberated, and this event somehow The equal distribution of chromosomes during mitosis is induces a class of ‘glue’ proteins, called cohesins (e.g. -
Mitosis Vs. Meiosis
Mitosis vs. Meiosis In order for organisms to continue growing and/or replace cells that are dead or beyond repair, cells must replicate, or make identical copies of themselves. In order to do this and maintain the proper number of chromosomes, the cells of eukaryotes must undergo mitosis to divide up their DNA. The dividing of the DNA ensures that both the “old” cell (parent cell) and the “new” cells (daughter cells) have the same genetic makeup and both will be diploid, or containing the same number of chromosomes as the parent cell. For reproduction of an organism to occur, the original parent cell will undergo Meiosis to create 4 new daughter cells with a slightly different genetic makeup in order to ensure genetic diversity when fertilization occurs. The four daughter cells will be haploid, or containing half the number of chromosomes as the parent cell. The difference between the two processes is that mitosis occurs in non-reproductive cells, or somatic cells, and meiosis occurs in the cells that participate in sexual reproduction, or germ cells. The Somatic Cell Cycle (Mitosis) The somatic cell cycle consists of 3 phases: interphase, m phase, and cytokinesis. 1. Interphase: Interphase is considered the non-dividing phase of the cell cycle. It is not a part of the actual process of mitosis, but it readies the cell for mitosis. It is made up of 3 sub-phases: • G1 Phase: In G1, the cell is growing. In most organisms, the majority of the cell’s life span is spent in G1. • S Phase: In each human somatic cell, there are 23 pairs of chromosomes; one chromosome comes from the mother and one comes from the father. -
20P Deletions FTNW
20p deletions rarechromo.org Deletions from chromosome 20p A chromosome 20p deletion is a rare genetic condition caused by the loss of material from one of the body’s 46 chromosomes. The material has been lost from the short arm (the top part in the diagram on the next page) of chromosome 20. Chromosomes are the structures in the nucleus of the body’s cells that carry the genetic information that controls development and function. In total every human individual normally has 46 chromosomes. Of these, two are a pair of sex chromosomes, XX (a pair of X chromosomes) in females and XY (one X chromosome and one Y chromosome) in males. The remaining 44 chromosomes are grouped in pairs. One chromosome from each pair is inherited from the mother while the other one is inherited from the father. Each chromosome has a short arm (called p) and a long arm (called q). Chromosome 20 is one of the smallest chromosomes in man. At present it is known to contain 737 genes out of the total of 20,000 to 25,000 genes in the human genome. You can’t see chromosomes with the naked eye, but if you stain them and magnify their image enough - about 850 times - you can see that each one has a distinctive pattern of light and dark bands. The diagram on the next page shows the bands of chromosome 20. These bands are numbered outwards starting from the point where the short and long arms meet (the centromere ). A low number, as in p11 in the short arm, is close to the centromere. -
Aneuploidy and Aneusomy of Chromosome 7 Detected by Fluorescence in Situ Hybridization Are Markers of Poor Prognosis in Prostate Cancer'
[CANCERRESEARCH54,3998-4002,August1, 19941 Advances in Brief Aneuploidy and Aneusomy of Chromosome 7 Detected by Fluorescence in Situ Hybridization Are Markers of Poor Prognosis in Prostate Cancer' Antonio Alcaraz, Satoru Takahashi, James A. Brown, John F. Herath, Erik J- Bergstralh, Jeffrey J. Larson-Keller, Michael M Lieber, and Robert B. Jenkins2 Depart,nent of Urology [A. A., S. T., J. A. B., M. M. U, Laboratory Medicine and Pathology (J. F. H., R. B. fl, and Section of Biostatistics (E. J. B., J. J. L-JCJ, Mayo Clinic and Foundation@ Rochester, Minnesota 55905 Abstract studies on prostate carcinoma samples. Interphase cytogenetic analy sis using FISH to enumerate chromosomes has the potential to over Fluorescence in situ hybridization is a new methodologj@which can be come many of the difficulties associated with traditional cytogenetic used to detect cytogenetic anomalies within interphase tumor cells. We studies. Previous studies from this institution have demonstrated that used this technique to identify nonrandom numeric chromosomal alter ations in tumor specimens from the poorest prognosis patients with path FISH analysis with chromosome enumeration probes is more sensitive ological stages T2N@M,Jand T3NOMOprostate carcinomas. Among 1368 than FCM for detecting aneuploid prostate cancers (4, 5, 7). patients treated by radical prostatectomy, 25 study patients were ascer We designed a case-control study to test the hypothesis that spe tamed who died most quickly from progressive prostate carcinoma within cific, nonrandom cytogenetic changes are present in tumors removed 3 years of diagnosis and surgery. Tumors from 25 control patients who from patients with prostate carcinomas with poorest prognoses . -
Aging Mice Have Increased Chromosome Instability That Is Exacerbated by Elevated Mdm2 Expression
Oncogene (2011) 30, 4622–4631 & 2011 Macmillan Publishers Limited All rights reserved 0950-9232/11 www.nature.com/onc ORIGINAL ARTICLE Aging mice have increased chromosome instability that is exacerbated by elevated Mdm2 expression T Lushnikova1, A Bouska2, J Odvody1, WD Dupont3 and CM Eischen1 1Department of Pathology, Vanderbilt University School of Medicine, Nashville, TN, USA; 2Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA and 3Department of Biostatistics, Vanderbilt University School of Medicine, Nashville, TN, USA Aging is thought to negatively affect multiple cellular Introduction processes including the ability to maintain chromosome stability. Chromosome instability (CIN) is a common Genomic instability refers to the accumulation or property of cancer cells and may be a contributing factor acquisition of numerical and/or structural abnormali- to cellular transformation. The types of DNA aberrations ties in chromosomes. It has long been observed that that arise during aging before tumor development and that chromosome instability (CIN) is a hallmark of cancer contribute to tumorigenesis are currently unclear. Mdm2, cells and is postulated to be required for tumorigenesis a key regulator of the p53 tumor suppressor and (Lengauer et al., 1998; Negrini et al., 2010). Genomic modulator of DNA break repair, is frequently over- changes, such as chromosome breaks, translocations, expressed in malignancies and contributes to CIN. To genome rearrangements, aneuploidy and telomere short- determine the relationship between aging and CIN and the ening have been observed in aging organisms (Nisitani role of Mdm2, precancerous wild-type C57Bl/6 and et al., 1990; Tucker et al., 1999; Dolle and Vijg, 2002; littermate-matched Mdm2 transgenic mice at various Aubert and Lansdorp, 2008; Zietkiewicz et al., 2009). -
Centromere Chromatin: a Loose Grip on the Nucleosome?
CORRESPONDENCE Stanford, California, USA. 7. Black, B.E. et al. Nature 430, 578–582 (2004). Natl. Acad. Sci. USA 104, 15974–15981 (2007). e-mail: [email protected] 8. Walkiewicz, M.P., Dimitriadis, E.K. & Dalal, Y. Nat. 16. Godde, J.S. & Wolffe, A.P.J. Biol. Chem. 270, 27399– Struct. Mol. Biol. 21, 2–3 (2014). 27402 (1995). 1. Dalal, Y., Wang, H., Lindsay, S. & Henikoff, S. PLoS 9. Codomo, C.A., Furuyama, T. & Henikoff, S. Nat. Struct. 17. de Frutos, M., Raspaud, E., Leforestier, A. & Livolant, F. Biol. 5, e218 (2007). Mol. Biol. 21, 4–5 (2014). Biophys. J. 81, 1127–1132 (2001). 2. Dimitriadis, E.K., Weber, C., Gill, R.K., Diekmann, S. 10. Yoda, K. et al. Proc. Natl. Acad. Sci. USA 97, 7266– 18. Gansen, A. et al. Proc. Natl. Acad. Sci. USA 106, & Dalal, Y. Proc. Natl. Acad. Sci. USA 107, 20317– 7271 (2000). 15308–15313 (2009). 20322 (2010). 11. Tomschik, M., Karymov, M.A., Zlatanova, J. & Leuba, S.H. 19. Zhang, W., Colmenares, S.U. & Karpen, G.H. Mol. Cell 3. Bui, M. et al. Cell 150, 317–326 (2012). Structure 9, 1201–1211 (2001). 45, 263–269 (2012). 4. Furuyama, T., Codomo, C.A. & Henikoff, S. Nucleic 12. Bui, M., Walkiewicz, M.P., Dimitriadis, E.K. & Dalal, Y. 20. Tachiwana, H. et al. Nature 476, 232–235 (2011). Acids Res. 41, 5769–5783 (2013). Nucleus 4, 37–42 (2013). 21. Hasson, D. et al. Nat. Struct. Mol. Biol. 20, 687–695 5. Dunleavy, E.M., Zhang, W. & Karpen, G.H. -
Anaphase Bridges: Not All Natural Fibers Are Healthy
G C A T T A C G G C A T genes Review Anaphase Bridges: Not All Natural Fibers Are Healthy Alice Finardi 1, Lucia F. Massari 2 and Rosella Visintin 1,* 1 Department of Experimental Oncology, IEO, European Institute of Oncology IRCCS, 20139 Milan, Italy; alice.fi[email protected] 2 The Wellcome Centre for Cell Biology, Institute of Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, UK; [email protected] * Correspondence: [email protected]; Tel.: +39-02-5748-9859; Fax: +39-02-9437-5991 Received: 14 July 2020; Accepted: 5 August 2020; Published: 7 August 2020 Abstract: At each round of cell division, the DNA must be correctly duplicated and distributed between the two daughter cells to maintain genome identity. In order to achieve proper chromosome replication and segregation, sister chromatids must be recognized as such and kept together until their separation. This process of cohesion is mainly achieved through proteinaceous linkages of cohesin complexes, which are loaded on the sister chromatids as they are generated during S phase. Cohesion between sister chromatids must be fully removed at anaphase to allow chromosome segregation. Other (non-proteinaceous) sources of cohesion between sister chromatids consist of DNA linkages or sister chromatid intertwines. DNA linkages are a natural consequence of DNA replication, but must be timely resolved before chromosome segregation to avoid the arising of DNA lesions and genome instability, a hallmark of cancer development. As complete resolution of sister chromatid intertwines only occurs during chromosome segregation, it is not clear whether DNA linkages that persist in mitosis are simply an unwanted leftover or whether they have a functional role. -
CENP-B ANTIGEN AROTEC CENP-B Product Info.Pdf Version/Date: A/08.04.09 ATC02-02 CENP-B Antigen 0.20 Mg ATC02-10 CENP-B Antigen 1.0 Mg ______
CENP-B ANTIGEN AROTEC_CENP-B_Product_Info.pdf Version/Date: A/08.04.09 ATC02-02 CENP-B antigen 0.20 mg ATC02-10 CENP-B antigen 1.0 mg _________________________________________________________________________________ Description of the Product 2. Coat ELISA plates with 100 µl of diluted antigen per well. Cover and incubate 24 hours at +4oC. Purified recombinant full-length human sequence protein. After 3. Empty the plates and remove excess liquid by tapping on a coating onto ELISA plates the product will bind autoantibodies to paper towel. CENP-B. 4. Block excess protein binding sites by adding 200 µl PBS containing 1% BSA per well. Cover and incubate at +4oC Purity: The CENP-B autoantigen (80 kDa) is more than 90% overnight. pure, as assessed by SDS-polyacrylamide gel electrophoresis. 5. Empty plates and apply 100 µl of serum samples diluted 1:100 in PBS / 1% BSA / 1% casein / 0.1% Tween 20. Incubate at room temperature for 1 hour. Storage: Store at -65oC or below (long term). Avoid repeated 6. Empty plates and add 200 µl PBS / 0.1% Tween 20 per freezing and thawing. Mix thoroughly before use. well. Incubate 5 minutes then empty plates. Repeat this step twice. Clinical and Biochemical Data 7. Apply 100 µl anti-human IgG-enzyme conjugate (horseradish peroxidase or alkaline phosphatase) diluted in Autoantibodies to centromeric proteins in the sera of patients PBS / 1% BSA / 1% casein / 0.1% Tween 20 per well and with scleroderma were first described in 19801. Subsequent incubate for 1 hour. studies confirmed that anti-centromere antibodies (ACA) were 8. -
RNA Interference, Heterochromatin, and Centromere Function
46_Symp69_Allshire_p.389_396 4/21/05 10:34 AM Page 389 RNA Interference, Heterochromatin, and Centromere Function R.C. ALLSHIRE Wellcome Trust Centre for Cell Biology, University of Edinburgh, The King’s Buildings, Edinburgh EH9 3JR, Scotland, United Kingdom The centromere regions of most eukaryotic metaphase poacetylated state is important for centromere integrity chromosomes are distinctive. The narrower, more com- and function (Ekwall et al. 1997). pact appearance of these regions reflects two important The formation of a functional centromere and kineto- related features: centromeric cohesion and extensive chore assembly requires at least one outer repeat and a blocks of heterochromatin. First, sister centromeres re- central core region (Takahashi et al. 1992; Marschall and main associated because the cohesin complex remains in- Clarke 1995; Ngan and Clarke 1997). The central core tact at centromeres until anaphase. Second, the chromatin alone is unable to be packaged in unusual chromatin coating these regions is very different since they remain when replicated on an extrachromosomal plasmid or condensed throughout the cell cycle and are clearly visi- other sites in the genome or when replicated in Saccha- ble as the most concentrated foci of DNA in interphase romyces cerevisiae (Polizzi and Clarke 1991; Takahashi cells; this has been termed heterochromatin (Bernard and et al. 1992). Thus, this “unusual” CENP-A chromatin is Allshire 2002). not specified by the underlying DNA sequence within It has been known for many years that marker genes this region alone, but it must be induced by the context in placed close to or within such centromeric heterochro- which these sequences are placed. -
Pds5 Regulators Segregate Cohesion and Condensation Pathways in Saccharomyces Cerevisiae
Pds5 regulators segregate cohesion and condensation pathways in Saccharomyces cerevisiae Kevin Tong and Robert V. Skibbens1 Department of Biological Sciences, Lehigh University, Bethlehem, PA 18015 Edited by Douglas Koshland, University of California, Berkeley, CA, and approved April 23, 2015 (received for review January 21, 2015) Cohesins are required both for the tethering together of sister these cohesion-related processes are so intimately entwined as to chromatids (termed cohesion) and subsequent condensation into be potentially inseparable. discrete structures—processes fundamental for faithful chromo- Cells from RBS patients typically exhibit heterochromatic re- some segregation into daughter cells. Differentiating between pulsion (regionalized condensation defects) absent in cells from cohesin roles in cohesion and condensation would provide an im- CdLS patients. The presence of aneuploidy and failed mitosis also portant advance in studying chromatin metabolism. Pds5 is a cohe- appears to differentiate, at the cellular level, otherwise highly sin-associated factor that is essential for both cohesion maintenance similar developmental abnormalities(12,20).Therefore,theidenti- and condensation. Recent studies revealed that ELG1 deletion sup- fication of pathways through which cohesion and condensation are presses the temperature sensitivity of pds5 mutant cells. However, experimentally separated would provide important tools useful in the mechanisms through which Elg1 may regulate cohesion and con- dissecting each pathway in isolation and provide a broader un- densation remain unknown. Here, we report that ELG1 deletion from derstanding of the multifaceted cohesin complex. A limited number pds5-1 mutant cells results in a significant rescue of cohesion, but not of genes (RAD61/WAPL and ELG1), when deleted, suppress condensation, defects. Based on evidence that Elg1 unloads the DNA ctf7/eco1 mutant cell growth deficiencies.