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A Plasmid Vector with a Selectable Marker for Halophilic Archaebacteria MELISSA L
JOURNAL OF BACTERIOLOGY, Feb. 1990, p. 756-761 Vol. 172, No. 2 0021-9193/90/020756-06$02.00/0 Copyright © 1990, American Society for Microbiology A Plasmid Vector with a Selectable Marker for Halophilic Archaebacteria MELISSA L. HOLMES* AND MICHAEL L. DYALL-SMITH Department of Microbiology, University of Melbourne, Parkville, Victoria 3052, Australia Received 25 May 1989/Accepted 10 November 1989 A mutant resistant to the gyrase inhibitor novobiocin was selected from a halophilic archaebacterium belonging to the genus Haloferax. Chromosomal DNA from this mutant was able to transform wild-type ceils to novobiocin resistance, and these transformants formed visible colonies in 3 to 4 days on selective plates. The resistance gene was isolated on a 6.7-kilobase DNA KpnI fragment, which was inserted into a cryptic multicopy plasmid (pHK2) derived from the same host strain. The recombinant plasmid transformed wild-type cells at a high efficiency (>106/pg), was stably maintained, and could readily be reisolated from transformants. It could also transform Halobacterium volcanii and appears to be a useful system for genetic analysis in halophilic archaebacteria. Archaebacteria are phylogenetically distinct from eubac- cle was the lack of selectable traits, such as antibiotic teria and eucaryotes and can be broadly divided into three resistance. groups: methanogens, sulfur-dependent thermoacidophiles, The aim of this study was to find a selectable marker for and extreme halophiles (for a review, see reference 22). use in constructing plasmid vectors suitable for isolating and Numerous halobacteria have been isolated from hypersaline studying genes in halobacteria. We report the successful environments around the world, but it is only recently that construction of such a vector by using a gene conferring their taxonomy has been analyzed in a rigorous and compre- resistance to novobiocin and a cryptic plasmid from Halo- hensive fashion. -
The Effect of the Shrinking Great Salt Lake on Snow Duration in The
University of Utah UNDERGRADUATE RESEARCH JOURNAL Blowing in the wind: The effect of the shrinking Great Salt Lake on snow duration in the Wasatch Mountains. Chase Hodges-Heilmann (Gannet Hallar, Tanner Visnick, Christopher Rapp) Department of Atmospheric Science Introduction Utah has two things that tourists know about, the Great Salt Lake, and the Greatest Snow on Earth. The Great Salt Lake is receding and impacting the seasonal duration of the Greatest Snow on Earth. As the Great Salt Lake shrinks, the more arid surface contributes to more windblown dust. When this dust deposits onto snow, the albedo of the surface is decreased, and thus snow melts quicker. Relevant Literature Health complications, issues with visibility, and climate change are all influenced by windblown dust. Dust from the Great Salt Lake accounts for a total of 7% of all wind-blown dust in the Wasatch mountains (Skiles et al., 2018). Lake Sevier and the Great Salt Lake Desert make up the majority of wind-blown dust on the Wasatch mountains (Hahnenberger and Nicolli, 2012). Although dust from the Great Salt Lake right now isn’t major, the lakebed of the Great Salt Lake is becoming more and more exposed. Since pioneers arrived to Salt Lake City in 1847 the Great Salt Lake has decreased in elevation by 11 feet, which translates to a volume reduction of 48% and exposing nearly half of the lake bed (Wurtsbaugh et al., 2016). A decrease in volume of saline lakes is often attributed to global warming and climate change, but water development and diverting tributaries is also to blame (Wurtsbaugh et al., 2017). -
Identification of Early Salinity Stress-Responsive Proteins In
International Journal of Molecular Sciences Article Identification of Early Salinity Stress-Responsive Proteins in Dunaliella salina by isobaric tags for relative and absolute quantitation (iTRAQ)-Based Quantitative Proteomic Analysis Yuan Wang 1,2,†, Yuting Cong 2,†, Yonghua Wang 3, Zihu Guo 4, Jinrong Yue 2, Zhenyu Xing 2, Xiangnan Gao 2 and Xiaojie Chai 2,* 1 Key Laboratory of Hydrobiology in Liaoning Province’s Universities, Dalian Ocean University, Dalian 116021, China; [email protected] 2 College of fisheries and life science, Dalian Ocean University, Dalian 116021, China; [email protected] (Y.C.); [email protected] (J.Y.); [email protected] (Z.X.); [email protected] (X.G.) 3 Bioinformatics Center, College of Life Sciences, Northwest A&F University, Yangling 712100, China; [email protected] 4 College of Life Sciences, Northwest University, Xi’an, Shaanxi 710069, China; [email protected] * Correspondence: [email protected] † These authors contribute equally to the work. Received: 22 November 2018; Accepted: 16 January 2019; Published: 30 January 2019 Abstract: Salt stress is one of the most serious abiotic factors that inhibit plant growth. Dunaliella salina has been recognized as a model organism for stress response research due to its high capacity to tolerate extreme salt stress. A proteomic approach based on isobaric tags for relative and absolute quantitation (iTRAQ) was used to analyze the proteome of D. salina during early response to salt stress and identify the differentially abundant proteins (DAPs). A total of 141 DAPs were identified in salt-treated samples, including 75 upregulated and 66 downregulated DAPs after 3 and 24 h of salt stress. -
Phylogenetic Study of Some Strains of Dunaliella
American Journal of Environmental Science 9 (4): 317-321, 2013 ISSN: 1553-345X ©2013 Science Publication doi:10.3844/ajessp.2013.317.321 Published Online 9 (4) 2013 (http://www.thescipub.com/ajes.toc) Phylogenetic Study of Some Strains of Dunaliella 1Duc Tran, 1Trung Vo, 3Sixto Portilla, 2Clifford Louime, 1Nguyen Doan, 1Truc Mai, 1Dat Tran and 1Trang Ho 1School of Biotechnology, International University, Thu Duc Dist., VNU, Vietnam 2Florida A and M University, College of Engineering Sciences, Technology and Agriculture, FAMU Bio Energy Group, Tallahassee, FL 32307, USA 3Center for Estuarine, Environmental and Coastal Oceans Monitoring, Dowling College, 150 Idle Hour Blvd, Oakdale, New York 11769, USA Received 2013-07-13, Revised 2013-08-02; Accepted 2013-08-03 ABSTRACT Dunaliella strains were isolated from a key site for salt production in Vietnam (Vinh Hao, Binh Thuan province). The strains were identified based on Internal Transcribed Spacer (ITS) markers. The phylogenetic tree revealed these strains belong to the clades of Dunaliella salina and Dunaliella viridis . Results of this study confirm the ubiquitous nature of Dunaliella and suggest that strains of Dunaliella salina might be acquired locally worldwide for the production of beta-carotene. The identification of these species infers the presence of other Dunaliella species ( Dunaliella tertiolecta , Dunaliella primolecta , Dunaliella parva ), but further investigation would be required to confirm their presence in Vietnam. We anticipate the physiological and biochemical characteristics of these local species will be compared with imported strains in a future effort. This will facilitate selection of strains with the best potential for exploitation in the food, aquaculture and biofuel industries. -
A Mini Review-Effect of Dunaliella Salina on Growth and Health of Shrimps
International Journal of Fisheries and Aquatic Studies 2020; 8(5): 317-319 E-ISSN: 2347-5129 P-ISSN: 2394-0506 (ICV-Poland) Impact Value: 5.62 A mini review-effect of Dunaliella salina on growth and (GIF) Impact Factor: 0.549 IJFAS 2020; 8(5): 317-319 health of shrimps © 2020 IJFAS www.fisheriesjournal.com Received: 08-07-2020 Dian Yuni Pratiwi Accepted: 14-08-2020 Dian Yuni Pratiwi Abstract Lecturer of Faculty, Department Dunaliella salina is a unicellular green algae that can be used as a natural food for shrimp. This of Fisheries and Marine Science, microalgae provides various nutrients such as protein, carbohydrates, lipids, pigments and others. Several Universitas Padjadjaran, studies have shown that Dunaliella salina can increase the growth performance of shrimps. Not only that, Indonesia Dunaliella salina also grant various health effects. High β-carotene and phenol in Dunaliella salina can increase immune system. This review was examined the optimum growth condition for Dunaliellla salina, nutrition contained in Dunaliella salina, and effect of Dunaliella salina for growth and health of shrimps such as Fenneropenaeus indicus, Penaeus monodon, and Litopenaeus vannamei. This review recommendation for Dunaliella salina as a potential feed for other. Keywords: Dunaliella salina, Fenneropenaeus indicus, Penaeus monodon, Litopenaeus vannamei, growth, health 1. Introduction Shrimp is one of popular seafood in the world community. The United States, China, Europe, and Japan are the major consuming regions, while Indonesia, China, India, Vietnam are major producing regions. In 2019, the global shrimp market size reached a volume of 5.10 Million [1] Tons . Popular types of shrimp for consumption are Litopenaeus vannamei, Penaeus monodon [1] and Fenneropenaeus indicus [2]. -
The Life of Brine: Halophiles in 2001 Comment Mike Dyall-Smith* and Michael Danson
http://genomebiology.com/2001/2/12/reports/4033.1 Meeting report The life of brine: halophiles in 2001 comment Mike Dyall-Smith* and Michael Danson Addresses: *Department of Microbiology and Immunology, University of Melbourne, Victoria 3010, Australia. Centre for Extremophile Research, Department of Biology and Biochemistry, University of Bath, Bath, BA2 7AY, UK. Correspondence: Mike Dyall-Smith. E-mail: [email protected] Published: 21 November 2001 reviews Genome Biology 2001, 2(12):reports4033.1–4033.3 The electronic version of this article is the complete one and can be found online at http://genomebiology.com/2001/2/12/reports/4033 © BioMed Central Ltd (Print ISSN 1465-6906; Online ISSN 1465-6914) reports haloarchaea found in salt ponds that have 8% salt (or A report on the International conference on Halophilic 2.3-fold concentrated seawater) but are not detectable at the Microorganisms, Sevilla, Spain, 23-27 September 2001. higher salinities usually associated with haloarchaea (20-35% salt). Discovered using 16S rRNA libraries, the new haloar- chaea are distantly related to Haloarcula. None has been cul- The 2001 halophiles meeting covered archaea, bacteria, tured but these results suggest an optimum salt concentration fungi and algae adapted to living hypersaline environments. for growth far lower than that of known haloarchaea. These deposited research Despite the absence of some American colleagues as a result represent an intermediate group of haloarchaea, not previ- of the recent terrorist attack, the meeting was full of exciting ously suspected, and offer insight into the evolution of advances (as well as pictures of salt lakes, salterns, brines extreme halophiles. -
Oregon, California, Mormon Pioneer, and Pony Express National Historic Trails Long-Range Interpretive Plan
Harpers Ferry Center National Park Service U.S. Department of the Interior Oregon, California, Mormon Pioneer, and Pony Express National Historic Trails Long-Range Interpretive Plan August 2010 Oregon, California, Mormon Pioneer, and Pony Express National Historic Trails Long-Range Interpretive Plan August 2010 Prepared by: National Trails Intermountain Region & Harpers Ferry Center Interpretive Planning National Park Service U.S. Department of the Interior Photo Credits: National Park Service unless otherwise noted Table of Contents Introduction Planning Background Planning Foundation Vision for the Trails 1 Purpose and Signifi cance of the Trails 1 Trails-Wide Interpretive Themes 6 Trail-Specifi c Sub Themes 8 Interpretive Program Goals 10 Partnership Expectations 11 Recommendations 12 Technical Assistance 13 New Technology 15 Communications and Marketing 15 Topics and Audiences 17 Relationship Building 18 Special Populations 18 Staffi ng Needs 19 Planning Team 19 Appendices 20 Appendix A: Representative Trail-Related Visitor Centers and Interpretive Sites 21 Appendix B: Decade Goals for the National Trails 24 CANADA Rainy Flat ia lumb Pend hea S Co ou Rain ris y Or e d is i ll e ur So uri ead Re Clark ath Fork Fl sso d r Mi Riv lai Washington er . C North Dakota of St Cl ne th air ar Montana o t. Cl k e Nor S Fork wst llo t Yel e h lowstone Y S i mbia nak Colu Minnesota cons e is Portland !( W !( La Grande !( Dallas Oregon Idaho Wisconsi South Dakota Mi ssi Wi ssi lla m ppi ette Wyoming !( Boise Mis s Pocatello ouri Wi sco n si n Casper -
Engineering and Production of the Light-Driven Proton Pump Bacteriorhodopsin in 2D Crystals for Basic Research and Applied Technologies
Protocol Engineering and Production of the Light-Driven Proton Pump Bacteriorhodopsin in 2D Crystals for Basic Research and Applied Technologies Mirko Stauffer 1 , Stephan Hirschi 1 , Zöhre Ucurum 1, Daniel Harder 1 , Ramona Schlesinger 2,* and Dimitrios Fotiadis 1,* 1 Institute of Biochemistry and Molecular Medicine, and Swiss National Centre of Competence in Research (NCCR) TransCure, University of Bern, 3012 Bern, Switzerland; mirko.stauff[email protected] (M.S.); [email protected] (S.H.); [email protected] (Z.U.); [email protected] (D.H.) 2 Department of Physics, Genetic Biophysics, Freie Universität Berlin, 14195 Berlin, Germany * Correspondence: [email protected] (R.S.); [email protected] (D.F.) Received: 6 July 2020; Accepted: 19 July 2020; Published: 22 July 2020 Abstract: The light-driven proton pump bacteriorhodopsin (BR) from the extreme halophilic archaeon Halobacterium salinarum is a retinal-binding protein, which forms highly ordered and thermally stable 2D crystals in native membranes (termed purple membranes). BR and purple membranes (PMs) have been and are still being intensively studied by numerous researchers from different scientific disciplines. Furthermore, PMs are being successfully used in new, emerging technologies such as bioelectronics and bionanotechnology. Most published studies used the wild-type form of BR, because of the intrinsic difficulty to produce genetically modified versions in purple membranes homologously. However, modification and engineering is crucial for studies in basic research and, in particular, to tailor BR for specific applications in applied sciences. We present an extensive and detailed protocol ranging from the genetic modification and cultivation of H. -
Diversity of Halophilic Archaea in Fermented Foods and Human Intestines and Their Application Han-Seung Lee1,2*
J. Microbiol. Biotechnol. (2013), 23(12), 1645–1653 http://dx.doi.org/10.4014/jmb.1308.08015 Research Article Minireview jmb Diversity of Halophilic Archaea in Fermented Foods and Human Intestines and Their Application Han-Seung Lee1,2* 1Department of Bio-Food Materials, College of Medical and Life Sciences, Silla University, Busan 617-736, Republic of Korea 2Research Center for Extremophiles, Silla University, Busan 617-736, Republic of Korea Received: August 8, 2013 Revised: September 6, 2013 Archaea are prokaryotic organisms distinct from bacteria in the structural and molecular Accepted: September 9, 2013 biological sense, and these microorganisms are known to thrive mostly at extreme environments. In particular, most studies on halophilic archaea have been focused on environmental and ecological researches. However, new species of halophilic archaea are First published online being isolated and identified from high salt-fermented foods consumed by humans, and it has September 10, 2013 been found that various types of halophilic archaea exist in food products by culture- *Corresponding author independent molecular biological methods. In addition, even if the numbers are not quite Phone: +82-51-999-6308; high, DNAs of various halophilic archaea are being detected in human intestines and much Fax: +82-51-999-5458; interest is given to their possible roles. This review aims to summarize the types and E-mail: [email protected] characteristics of halophilic archaea reported to be present in foods and human intestines and pISSN 1017-7825, eISSN 1738-8872 to discuss their application as well. Copyright© 2013 by The Korean Society for Microbiology Keywords: Halophilic archaea, fermented foods, microbiome, human intestine, Halorubrum and Biotechnology Introduction Depending on the optimal salt concentration needed for the growth of strains, halophilic microorganisms can be Archaea refer to prokaryotes that used to be categorized classified as halotolerant (~0.3 M), halophilic (0.2~2.0 M), as archaeabacteria, a type of bacteria, in the past. -
Investigating the Effects of Simulated Martian Ultraviolet Radiation on Halococcus Dombrowskii and Other Extremely Halophilic Archaebacteria
ASTROBIOLOGY Volume 9, Number 1, 2009 © Mary Ann Liebert, Inc. DOI: 10.1089/ast.2007.0234 Special Paper Investigating the Effects of Simulated Martian Ultraviolet Radiation on Halococcus dombrowskii and Other Extremely Halophilic Archaebacteria Sergiu Fendrihan,1 Attila Bérces,2 Helmut Lammer,3 Maurizio Musso,4 György Rontó,2 Tatjana K. Polacsek,1 Anita Holzinger,1 Christoph Kolb,3,5 and Helga Stan-Lotter1 Abstract The isolation of viable extremely halophilic archaea from 250-million-year-old rock salt suggests the possibil- ity of their long-term survival under desiccation. Since halite has been found on Mars and in meteorites, haloar- chaeal survival of martian surface conditions is being explored. Halococcus dombrowskii H4 DSM 14522T was ex- posed to UV doses over a wavelength range of 200–400 nm to simulate martian UV flux. Cells embedded in a thin layer of laboratory-grown halite were found to accumulate preferentially within fluid inclusions. Survival was assessed by staining with the LIVE/DEAD kit dyes, determining colony-forming units, and using growth tests. Halite-embedded cells showed no loss of viability after exposure to about 21 kJ/m2, and they resumed growth in liquid medium with lag phases of 12 days or more after exposure up to 148 kJ/m2. The estimated Ն 2 D37 (dose of 37 % survival) for Hcc. dombrowskii was 400 kJ/m . However, exposure of cells to UV flux while 2 in liquid culture reduced D37 by 2 orders of magnitude (to about 1 kJ/m ); similar results were obtained with Halobacterium salinarum NRC-1 and Haloarcula japonica. -
Jewell Nicoll Geomorph 2011.Pdf
This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research and education use, including for instruction at the authors institution and sharing with colleagues. Other uses, including reproduction and distribution, or selling or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most cases authors are permitted to post their version of the article (e.g. in Word or Tex form) to their personal website or institutional repository. Authors requiring further information regarding Elsevier’s archiving and manuscript policies are encouraged to visit: http://www.elsevier.com/copyright Author's personal copy Geomorphology 129 (2011) 1–13 Contents lists available at ScienceDirect Geomorphology journal homepage: www.elsevier.com/locate/geomorph Wind regimes and aeolian transport in the Great Basin, U.S.A. Paul W. Jewell a,⁎, Kathleen Nicoll b a Department of Geology and Geophysics, University of Utah, Salt Lake City, UT 84112, United States b Department of Geography, University of Utah, Salt Lake City, UT 84112, United States article info abstract Article history: The modern Great Basin of the interior western United States is characterized by surface winds with Received 23 April 2010 considerable spatial and temporal variabilities. Wind records from the second half of the 20th century for 12 Received in revised form 4 January 2011 Great Basin localities, analyzed with standard aeolian-sediment transport methods developed elsewhere in Accepted 11 January 2011 the world, reflect this complexity. The drift potential (DP) for aeolian deposits is generally moderate (DP 200– Available online 19 January 2011 400) in the western Great Basin and weak (DPb200) in the central Great Basin where winds are predominantly west-southwesterly. -
The Ecology of Dunaliella in High-Salt Environments Aharon Oren
Oren Journal of Biological Research-Thessaloniki (2014) 21:23 DOI 10.1186/s40709-014-0023-y REVIEW Open Access The ecology of Dunaliella in high-salt environments Aharon Oren Abstract Halophilic representatives of the genus Dunaliella, notably D. salina and D. viridis, are found worldwide in salt lakes and saltern evaporation and crystallizer ponds at salt concentrations up to NaCl saturation. Thanks to the biotechnological exploitation of D. salina for β-carotene production we have a profound knowledge of the physiology and biochemistry of the alga. However, relatively little is known about the ecology of the members of the genus Dunaliella in hypersaline environments, in spite of the fact that Dunaliella is often the main or even the sole primary producer present, so that the entire ecosystem depends on carbon fixed by this alga. This review paper summarizes our knowledge about the occurrence and the activities of different Dunaliella species in natural salt lakes (Great Salt Lake, the Dead Sea and others), in saltern ponds and in other salty habitats where members of the genus have been found. Keywords: Dunaliella, Hypersaline, Halophilic, Great Salt Lake, Dead Sea, Salterns Introduction salt adaptation. A number of books and review papers When the Romanian botanist Emanoil C. Teodoresco have therefore been devoted to the genus [5-7]. How- (Teodorescu) (1866–1949) described the habitat of the ever, the ecological aspects of the biology of Dunaliella new genus of halophilic unicellular algae Dunaliella,it are generally neglected. A recent monograph did not was known from salterns and salt lakes around the devote a single chapter to ecological aspects, and con- Mediterranean and the Black Sea [1-3].