Comparative Analysis of the Composition Of

Total Page:16

File Type:pdf, Size:1020Kb

Comparative Analysis of the Composition Of Comparative Analysis of the Composition of Intestinal Bacterial Communities in Dastarcus helophoroides Fed Different Diets Author(s): Wei-Wei Wang, Cai He, Jun Cui, Hai-Dong Wang, and Meng-Lou Li Source: Journal of Insect Science, 14(111):1-13. 2014. Published By: Entomological Society of America DOI: http://dx.doi.org/10.1673/031.014.111 URL: http://www.bioone.org/doi/full/10.1673/031.014.111 BioOne (www.bioone.org) is a nonprofit, online aggregation of core research in the biological, ecological, and environmental sciences. BioOne provides a sustainable online platform for over 170 journals and books published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Web site, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/page/terms_of_use. Usage of BioOne content is strictly limited to personal, educational, and non-commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. Journal of Insect Science: Vol. 14 | Article 111 Wang et al. Comparative analysis of the composition of intestinal bacterial communities in Dastarcus helophoroides fed different diets Wei-Wei Wang,1a Cai He,2b Jun Cui,1c Hai-Dong Wang,1d and Meng-Lou Li1e* 1Laboratory of Forestry Pests Biological Control, College of Forestry, Northwest A&F University, Yangling, Shaanxi, 712100, P. R. China 2Wuwei Academy of Forestry Sciences, Wuwei, Gansu, 733000, P. R. China Abstract The diversity of the intestinal bacterial communities in Dastarcus helophoroides (Fairmaire) (Coleoptera: Bothrideridae) larvae and adults was assayed by PCR-DGGE to determine whether different artificial diets could influence these bacterial communities. Two diets were used for feeding the larvae and four for the adults. Escherichia, Desemzia, Staphylococcus, Asticcacaulis, Cellvibrio, Aurantimonas, and Planomicrobium were isolated from the gut of the adults, with Escherichia and Staphylococcus being the main bacterial communities, and the quantities of in- testinal bacterial were different in the adults fed different diets. Specifically, the amount of intestinal bacteria from the adults fed different diets had the following ranking according to the major component of the diet: ant powder > darkling beetle pupa powder > cricket powder > silk- worm pupa powder. Escherichia, Bacillus, Staphylococcus, Kurthia, Planococcaceae, Ralstonia, Leptothrix, Acinetobacter, and Pseudomonas were isolated from the gut of the larvae. The quanti- ty of intestinal bacteria from the larvae fed the darkling beetle pupae was greater than that from the larvae fed other artificial diets. This study, for the first time, investigated the effect of artifi- cial diets on the bacterial community and the intestinal microbial diversity of D. helophoroides. Keywords: parasitoid beetle, nested PCR, DGGE, larva, adult Correspondence: a [email protected], b [email protected], c [email protected], d [email protected], e [email protected], *Corresponding author Editor: Allen Cohen was editor of this paper. Received: 1 October 2012 Accepted: 20 February 2013 Published: 12 August 2014 Copyright: This is an open access paper. We use the Creative Commons Attribution 3.0 license that permits unrestricted use, provided that the paper is properly attributed. ISSN: 1536-2442 | Vol. 14, Number 111 Cite this paper as: Wang WW, He C, Cui J, Wang HD, Li ML. 2014. Comparative analysis of the composition of intestinal bacterial communities in Dastarcus helophoroides fed different diets. Journal of Insect Science 14(111). Available online: http://www.insectscience.org/14.111 Journal of Insect Science | http://www.insectscience.org 1 Journal of Insect Science: Vol. 14 | Article 111 Wang et al. Introduction Kane and Breznak (1991) and Kaufman et al. (2000) found that using different food sources Vast numbers of microorganisms inhabit the could promote the development of alternative insect gut, and many occupy the alimentary bacterial communities in cockroaches and tract and play an important role in the physio- crickets. Abundant microorganisms inhabit in logical function and behavior of their host the gut of Costelytra zealandica (White) of (Dillon and Dillon 2004). It is well known that Coleoptera, an important group in insects intestinal tract flora plays an important role in (Zhang and Jackson 2008), and are considered maintaining the health of the host by main- to play important roles in coleopteran nutri- taining a normal ecological equilibrium, tion and metabolism (Jeon et al. 2011). combining absorption, digestion, and protec- tion against the invasion of pathogenic Dastarcus helophoroides (Fairmaire) (Coleop- microorganisms (Rio et al. 2004, Dillon et al. tera: Bothrideridae) is one of the most 2005, Jeon et al. 2011). At present, the re- effective natural enemies against the large- search on the insect intestinal microflora and bodied longhorn beetle (Yang 2004). The lar- dominant bacterial communities is focused va of D. helophoroides is an ecto-parasitoid of mainly on termites belonging to Isoptera and the larvae and pupae of various trunk borers, on Bombyx mori (L.), which belongs to Lepi- such as Anoplophora glabripennis doptera (Eutick et al. 1978, Brune and (Motschulsky), Monochamus alternatus Friedrich 2000, Xiang et al. 2007). (Hope), Mallambyx radei Blessig, Apriona swainsoni (Hope), Batocera horsfieldi (Hope), Denaturing gradient gel electrophoresis and A. germari (Wang et al. 1996, Yang (DGGE) has been used widely to identify and 2004). Although the adult lifespan of D. helo- monitor the microbes common to different phoroides exceeds three years, the larval stage individuals and environments (Reeson et al. is only approximately one week, and the pupal 2003, Hayashi et al. 2007). Using polymerase stage is 20 to 30 days. The previous reports on chain reaction and denaturing gradient gel D. helophoroides were focused mainly on its electrophoresis (PCR-DGGE), Zhang and biological characteristics (Lei et al. 2003), ar- Jackson (2008) studied the digestive tract of tificial diets, the release of adults for scarabs and found that the dominant bacterial biological control (Wang and Ogura 1999), communities were mainly Clostridiales, fol- and the adult host-identification mechanism of lowed by Proteobacteria and Bacteroides. using informational chemicals (Wei et al. Twenty-one bacteria, belonging to thirteen 2008). In this study, we examined the micro- microflora, were isolated from the larval gut bial communities of larval and adult guts of D. of Apriona germari (Hope) (Zhang et al. helophoroides by using DGGE to separate 2004). Different food resources provide nutri- amplified 16S rDNA gene fragments by PCR. ents to the different bacterial communities in the intestines of insects, and the diet of a Because the narrow distribution and low den- number of aquatic invertebrates is known to sity of D. helophoroides in nature limit its influence their intestinal microflora (Harris function in biological control, it is necessary 1993). The effect of diet on the intestinal bac- to develop artificial diets for D. helophoroid- teria in crickets (Kaufman et al. 2000), es. However, if the composition of the cockroaches (Kane and Breznak 1991), and artificial diet were inappropriate, it would af- wasps (Reeson et al. 2003) has been reported. fect the intestinal bacterial community and Journal of Insect Science | http://www.insectscience.org 2 Journal of Insect Science: Vol. 14 | Article 111 Wang et al. thus the digestive function and healthy growth 2005, Shang et al. 2009), but whether these of the insect. To date, artificial diets for D. diets have an effect on the intestinal bacteria helophoroides larvae and adults have been remains unknown. Hence, this study investi- investigated (Wang et al. 1999, Lei et al. gated the larval and adult intestinal microflora of D. helophoroides fed different arti- Table 1. Composition of the four diets used for feeding D. helophoroides adults. ficial diets under the same conditions. Ingredient Diet I II III IV Materials and Methods Silkworm pupa powdera 10 g a Darkling beetle pupa powder 10 g Diets and insects Cricket powdera 10 g All of the insects used in this study Ant powdera 10 g were housed in the laboratory under Wood powderb 2.5 g optimal growing conditions. The adult Dry yeastsc 10 g 10 g 10 g 10 g artificial diets (Diet I, II, III, and IV) Lyophilized chicken yolkd 14 g 14 g 14 g 14 g Sucrosec 3.3 g 3.3 g 3.3 g 3.3 g were prepared as shown in Table 1, Agarc 3.3 g 3.3 g 3.3 g 3.3 g and all insects used as the major com- Benzoic acidc 0.02 g 0.02 g 0.02 g 0.02 g ponent of four diets were collected Distilled water 56.88 mL 56.88 mL 56.88 mL 56.88 mL from the wild, dried, and ground into Sunflower seed oild 8 mL powder in the lab. The larval Diet V a Silkworm pupae, crickets, darkling beetle pupae, and ants were collected from consisted of darkling beetle pupae. the wild and then dried and ground into powder in the lab. The artificial Diet VI was prepared as b Poplar xylem was dried and ground into powder in the lab. c Dry yeasts, sucrose, agar, and benzoic acid were purchased from TIANGEN shown in Table 2, and the contents
Recommended publications
  • Biodiversity of Psychrotrophic Microbes and Their Biotechnological Applications
    Journal of Applied Biology & Biotechnology Vol. 7(04), pp. 99-108, July-August, 2019 Available online at http://www.jabonline.in DOI: 10.7324/JABB.2019.70415 Biodiversity of psychrotrophic microbes and their biotechnological applications Ajar Nath Yadav1*, Neelam Yadav2, Shashwati Ghosh Sachan3, Anil Kumar Saxena4 1Department of Biotechnology, Akal College of Agriculture, Eternal University, Baru Sahib, Himachal Pradesh, India, 2Gopi Nath P. G. College, Veer Bahadur Singh Purvanchal University, Uttar Pradesh, India, 3Department of Bio-Engineering, Birla Institute of Technology, Ranchi, Jharkhand, India, 4ICAR-National Bureau of Agriculturally Important Microorganisms, Mau, Uttar Pradesh, India ARTICLE INFO ABSTRACT Article history: The extreme cold environments harbor novel psychrotrophic microbes. The psychrotrophic microbes have been reported Received on: December 02, 2018 Accepted on: January 16, 2019 as plant growth promoters and biocontrol agents for sustainable agriculture, in industry as cold-adapted hydrolytic enzymes and in medicine as secondary metabolites and pharmaceutical important bioactive compounds. Inoculation Available online: July 04, 2019 with psychrotrophic/psychrotolerant strains significantly enhanced root/shoot biomass and nutrients uptake as compared to non-bacterized control. The psychrotrophic microbes play important role in alleviation of cold stress in plant growing Key words: at high hill and low temperature and conditions. The psychrotrophic microbes have been reported from worldwide Adaptation, Biodiversity,
    [Show full text]
  • Biores 09 1 316 Zain
    PEER-REVIEWED ARTICLE bioresources.com Bacterial Community Structure and Biochemical Changes Associated With Composting of Lignocellulosic Oil Palm Empty Fruit Bunch Mohd Huzairi Mohd Zainudin,a Mohd Ali Hassan,a,* Umi Kalsom Md Shah,a Norhani Abdullah,b,c Mitsunori Tokura,d Hisashi Yasueda,d Yoshihito Shirai,e Kenji Sakai,f and Azhari Samsu Baharuddin g Bacterial community structure and biochemical changes during the composting of lignocellulosic oil palm empty bunch (EFB) and palm oil mill effluent (POME) anaerobic sludge were studied by examining the succession of the bacterial community and its association with changes in lignocellulosic components by denaturing gradient gel electrophoresis (DGGE) and the 16S rRNA gene clone library. During composting, a major reduction in cellulose after 10 days from 50% to 19% and the carbon content from 44% to 27% towards the end of the 40-day composting period were observed. The C/N ratio also decreased. A drastic change in the bacterial community structure and diversity throughout the composting process was clearly observed using PCR- DGGE banding patterns. The bacterial community drastically shifted between the thermophilic and maturing stages. 16s rRNA clones belonging to the genera Bacillus, Exiguobacterium, Desemzia, and Planococcus were the dominant groups throughout composting. The species closely related to Solibacillus silvestris were found to be major contributors to changes in the lignocellulosic component. Clones identified as Thermobacillus xylanilyticus, Brachybacterium faecium,
    [Show full text]
  • EGU2018-16859-1, 2018 EGU General Assembly 2018 © Author(S) 2018
    Geophysical Research Abstracts Vol. 20, EGU2018-16859-1, 2018 EGU General Assembly 2018 © Author(s) 2018. CC Attribution 4.0 license. Mg-rich carbonates mediated by a bacterium isolated from an extreme alkaline lake in Central Spain M. Esther Sanz- Montero (1), Óscar Cabestrero (1), and Mónica Sánchez-Román (2) (1) Mineralogy and Petrology Department, University Complutense of Madrid, Spain, (2) Vrije University Amsterdam, Earth Sciences Department, Amsterdam, The Netherlands Microbial mats known to contain up to 45% of hydromagnesite and other Mg-rich carbonates (nesquehonite, dolomite) are present in Las Eras, a highly alkaline and brackish to saline playa-lake situated about 150 km north of Madrid, Central Spain. This water body contains a high concentration of chloride with dominant carbonate over sulphates ions, which results in pH values ranging from 9.2 to more than 11. Unlike, other soda lakes, Las Eras is characterized by significant amounts of Mg that, in addition to Na-carbonates, favor the formation of Mg-carbonates (Cabestrero and Sanz-Montero, 2016). Here we report the bacterial precipitation of Mg-rich carbonates (hydromagnesite, dypingite and dolomite, among others) mediated by an isolated bacterium from the playa lake microbial-mat. Scanning electron microscopy (SEM) images shows that the carbonate precipitates are closely associated to bacterial cells and extra-cellular polysaccharides (EPS). Analysis of the 16S rRNA sequence of this isolated bacterium revealed a 99.8% identity (i.e. same species) with Desemzia incerta (Y17300). This EPS-forming bacterium was cultivated in a saline and organic rich solid medium at 30º C, in order to simulate the extreme conditions in this playa lake system and the precipitation in its microbial mat.
    [Show full text]
  • Isobaculum Melis Gen. Nov., Sp. Nov., a Carnobacterium-Like Organism
    International Journal of Systematic and Evolutionary Microbiology (2002), 52, 207–210 Printed in Great Britain Isobaculum melis gen. nov., sp. nov., a NOTE Carnobacterium-like organism isolated from the intestine of a badger 1 School of Food Biosciences, Matthew D. Collins,1 Roger A. Hutson,1 Geoffrey Foster,2 Enevold Falsen3 Whiteknights, University 4 of Reading, Reading and Norbert Weiss RG6 6AP, UK 2 SAC Veterinary Science Author for correspondence: Matthew D. Collins. Tel: j44 118 935 7000. Fax: j44 118 926 7917. Division, Drummondhill, e-mail: m.d.collins!reading.ac.uk Inverness, UK 3 Culture Collection, Department of Clinical Phenotypic and phylogenetic studies were performed on a hitherto Bacteriology, University of undescribed facultatively anaerobic, catalase-negative, Gram-positive rod- Go$ teborg, Go$ teborg T Sweden shaped organism, strain M577-94 , isolated from the small intestine of a dead badger. It resembled carnobacteria in terms of its long-chain cellular fatty acid 4 Deutsche Sammlung von Mikroorganismen und composition, but differed markedly from the latter in possessing a cell-wall Zellkulturen GmbH, murein based on L-lysine (type L-Lys–L-Thr–Gly). Comparative 16S rRNA gene Braunschweig, Germany sequencing showed that the unknown bacterium represents a new line closely related to, albeit distinct from, the genera Carnobacterium and Desemzia.On the basis of phylogenetic and phenotypic evidence, it is proposed that strain M577-94T be classified as Isobaculum melis gen. nov., sp. nov. The type strain of Isobaculum melis is CCUG 37660T (l DSM 13760T). Keywords: Isobaculum melis, 16S rRNA, taxonomy, phylogeny The genus Carnobacterium was proposed as the genus known non-spore-forming rod-shaped bacterium, accommodating the species Lactobacillus divergens isolated from a badger, which somewhat resembles and Lactobacillus piscicola and a number of atypical carnobacteria.
    [Show full text]
  • Extreme Cold Environments: a Suitable Niche for Selection of Novel Psychrotrophic Microbes for Biotechnological Applications
    Editorial Adv Biotech & Micro Volume 2 Issue 2 - February 2017 Copyright © All rights are reserved by Ajar Nath Yadav DOI: 10.19080/AIBM.2017.02.555584 Extreme Cold Environments: A Suitable Niche for Selection of Novel Psychrotrophic Microbes for Biotechnological Applications Ajar Nath Yadav1*, Priyanka Verma2, Vinod Kumar1, Shashwati Ghosh Sachan3 and Anil Kumar Saxena4 1Department of Biotechnology, Eternal University, India 2Department of Microbiology, Eternal University, India 3Department of Bio-Engineering, Birla Institute of Technology, India 4ICAR-National Bureau of Agriculturally Important Microorganisms, India Submission: January 27, 2017; Published: February 06, 2017 *Corresponding author: Ajar Nath Yadav, Assistant professor, Department of Biotechnology, Akal College of Agriculture, Eternal University, India, Tel: ; Email: Editorial several reports on whole genome sequences of novel and The microbiomes of cold environments are of particular potential psychrotrophic microbes [26,27]. importance in global ecology since the majority of terrestrial and aquatic ecosystems of our planet are permanently or The novel species of psychrotrophic microbes have been seasonally submitted to cold temperatures. Earth is primarily a isolated worldwide and reported from different domain cold, marine planet with 90% of the ocean’s waters being at 5°C archaea, bacteria and fungi which included members of phylum or lower. Permafrost soils, glaciers, polar sea ice, and snow cover Actinobacteria, Proteobacteria, Bacteroidetes, Basidiomycota, make up 20% of the Earth’s surface environments. Microbial Firmicutes and Euryarchaeota [7-25]. Along with novel species communities under cold habitats have been undergone the of psychrotrophic microbes, some microbial species including physiological adaptations to low temperature and chemical Arthrobacter nicotianae, Brevundimonas terrae, Paenibacillus stress.
    [Show full text]
  • Associated Microbiota in Rainbow Trout (Oncorhynchus Mykiss)
    www.nature.com/scientificreports OPEN In-depth analysis of swim bladder- associated microbiota in rainbow trout (Oncorhynchus mykiss) Received: 30 May 2018 Alejandro Villasante1, Carolina Ramírez1, Héctor Rodríguez2, Natalia Catalán1, Osmán Díaz1, Accepted: 23 May 2019 Rodrigo Rojas3, Rafael Opazo1 & Jaime Romero 1 Published: xx xx xxxx Our knowledge regarding microbiota associated with the swim bladder of physostomous, fsh with the swim bladder connected to the esophagus via the pneumatic duct, remains largely unknown. The goal of this study was to conduct the frst in-depth characterization of the swim bladder-associated microbiota using high-throughput sequencing of the V4 region of the 16 S rRNA gene in rainbow trout (Oncorhynchus mykiss). We observed major diferences in bacterial communities composition between swim bladder-associated microbiota and distal intestine digesta microbiota in fsh. Whilst bacteria genera, such as Cohnella, Lactococcus and Mycoplasma were more abundant in swim bladder- associated microbiota, Citrobacter, Rhodobacter and Clavibacter were more abundant in distal intestine digesta microbiota. The presumptive metabolic function analysis (PICRUSt) revealed several metabolic pathways to be more abundant in the swim bladder-associated microbiota, including metabolism of carbohydrates, nucleotides and lipoic acid as well as oxidative phosphorylation, cell growth, translation, replication and repair. Distal intestine digesta microbiota showed greater abundance of nitrogen metabolism, amino acid metabolism, biosynthesis of unsaturated fatty acids and bacterial secretion system. We demonstrated swim bladder harbors a unique microbiota, which composition and metabolic function difer from microbiota associated with the gut in fsh. In teleost species, the swim bladder is a unique gas-flled organ crucial for regulation of buoyancy, equilibrium and position of fsh in the water column by modulating whole-body density1,2.
    [Show full text]
  • Microbial Diversity in Rainwater Harvesting Systems: Towards an Understanding of Tank Water Quality
    Microbial Diversity and the Quality of Roof-harvested Rainwater C.A. Evans, P.J. Coombes, R.H. Dunstan, T.L. Harrison, A. Martin, K. Pigott, J.N. Harris School of Environmental and Life Sciences University of Newcastle Australia AreAre nonnon--pathogenicpathogenic bacteriabacteria significant?significant? 1. The ‘treatment train’ effect • Apparent improvements to the microbial and chemical quality of water with passage through the collection system. Contaminated run-off ‘Treatment train’ INLET Improved water quality OUTLET AreAre nonnon--pathogenicpathogenic bacteriabacteria significant?significant? 1. The ‘treatment train’ effect • Apparent improvements to the microbial and chemical quality of water with passage through the collection system. 2. Environmental bacteria comprise majority of organisms present in rainwater tanks. •HPC >>> coliform counts - (orders of magnitude) • Bacterial composition influenced by wind patterns WindWind direction/velocitydirection/velocity && HPCHPC 6000 (r2 = 0.98, p<0.001) 5000 ) L 4000 m / u f N c 3000 C ( S 2000 2 HP (r = 0.85, p<0.03) 1000 0 02468 Wind velocity (m/sec) Contaminated run-off ‘Treatment train’ INLET Biofilm formation Nutrient cycling Chemical remediation Competitive exclusion of pathogens Improved water quality OUTLET OverviewOverview 1. Assessment of microbial diversity in 2 rainwater tanks. • Impact of hot water systems • Assessment of coliforms 2. Biofilm pilot studies • Biofilm development and the treatment train • In-vitro examination of Pb2+ uptake MicrobialMicrobial DiversityDiversity ofof 22 RainwaterRainwater TanksTanks • Urban tank – Located in Newcastle (160kM Nth of Sydney) – Duel 2.2kL galvanized iron tanks – Mains water top-up system – Hot water service set at 60°C • Rural tank – Located at Gulgong (250kM inland of Newcastle) – 10kL ‘aquaplate’ tank – Hot water service set at 50°C.
    [Show full text]
  • Differences in the Bacteriome of Smokeless Tobacco Products with Different Oral Carcinogenicity: Compositional and Predicted Functional Analysis
    G C A T T A C G G C A T genes Article Differences in the Bacteriome of Smokeless Tobacco Products with Different Oral Carcinogenicity: Compositional and Predicted Functional Analysis Nezar Noor Al-hebshi 1,2,*, Fahd Ali Alharbi 3, Mohammed Mahri 1 and Tsute Chen 4 1 Department of Maxillofacial Surgery and Diagnostic Sciences, College of Dentistry, Jazan University, 45142 Jazan, Saudi Arabia; [email protected] 2 Kornberg School of Dentistry, Temple University, 3223 N Board Street, Philadelphia, PA 19140, USA 3 Otolaryngology—Head and Neck Surgery Department, Faculty of Medicine, Jazan University, 45142 Jazan, Saudi Arabia; [email protected] 4 Department of Microbiology, Forsyth Institute, Cambridge, MA 02142, USA; [email protected] * Correspondence: [email protected] Academic Editor: Thierry Wirth Received: 22 December 2016; Accepted: 17 March 2017; Published: 23 March 2017 Abstract: Smokeless tobacco (ST) products vary significantly in their oral carcinogenicity. Much is known about the differences in the chemical, but not the bacterial, constituents of these products. In this study, we explored the composition and function of the bacteriome in ST products from four countries using quantitative polymerase chain reaction (qPCR) and 16S rRNA-based next generation sequencing. The bacterial load (16S rRNA copies/gram) was lowest in Swedish snus (3.4 × 106) and highest in Yemeni shammah (6.6 × 1011). A total of 491 species-level taxa, many of which are potentially novel, belonging to 178 genera and 11 phyla were identified. Species richness and diversity were highest for Swedish snus and lowest for Yemeni shammah. Bacillus, Paenibacillus, and Oceanobacillus spp.
    [Show full text]
  • Comparison of 16S Rrna Sequencing with Conventional and Commercial Phenotypic Techniques for Identification of Enterococci from the Marine Environment D.F
    Journal of Applied Microbiology ISSN 1364-5072 ORIGINAL ARTICLE Comparison of 16S rRNA sequencing with conventional and commercial phenotypic techniques for identification of enterococci from the marine environment D.F. Moore1, M.H. Zhowandai1, D.M. Ferguson1, C. McGee2, J.B. Mott3 and J.C. Stewart3 1 Orange County Public Health Laboratory, Newport Beach, CA, USA 2 Orange County Sanitation District, Fountain Valley, CA, USA 3 Texas A&M University-Corpus Christi, Corpus-Christi, TX, USA Keywords Abstract Enterococci, identification methods, marine isolates, marine water quality, 16S rRNA Aims: To compare accuracy of genus and species level identification of pre- sequencing. sumptive enterococci isolates from the marine environment using conventional biochemical testing, four commercial identification systems and 16S rRNA Correspondence sequence analysis. Mariam H. Zhowandai, Orange County Public Methods and Results: Ninety-seven environmental bacterial isolates identified Health Laboratory, 700 Shellmaker Road, as presumptive enterococci on mEI media were tested using conventional and Newport Beach CA, 92660, USA. E-mail: [email protected] Enterococcus genus screen biochemical tests, four commercial testing systems and 16S rRNA sequencing. Conventional and Enterococcus genus screen bio- 2005/0964: received 25 August 2005, revised chemical testing, 16S rRNA sequencing and two commercial test systems 14 November 2005, accepted 16 November achieved an accuracy of ‡94% for Enterococcus genus confirmation. Conven- 2005 tional biochemical testing and 16S rRNA sequencing achieved an accuracy of ‡90% for species level identification. doi:10.1111/j.1365-2672.2006.02879.x Conclusions: For confirmation of Enterococcus genus from mEI media, conven- tional or genus screen biochemical testing, 16S rRNA sequencing and the four commercial systems were correct 79–100% of the time.
    [Show full text]
  • Temporal Changes in the Gut Microbiota in Farmed Atlantic Cod (Gadus Morhua) Outweigh 2 the Response to Diet Supplementation with Macroalgae
    bioRxiv preprint doi: https://doi.org/10.1101/2020.08.10.222604; this version posted August 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Temporal changes in the gut microbiota in farmed Atlantic cod (Gadus morhua) outweigh 2 the response to diet supplementation with macroalgae. 3 4 C. Keating1,2 Y*, M. Bolton-Warberg3 Y, J. Hinchcliffe 5, R. Davies6, S. Whelan3, A.H.L. Wan7,8, 5 R. D. Fitzgerald3†, S. J. Davies9, U. Z. Ijaz2*, C. J. Smith1,2* 6 7 1Department of Microbiology, School of Natural Sciences, National University of Ireland 8 Galway, Ireland, H91 TK33. 9 2Water and Environment Group, Infrastructure and Environment Division, James Watt School of 10 Engineering, University of Glasgow, Glasgow, United Kingdom, G12 8LT. 11 3Carna Research Station, Ryan Institute, National University of Ireland Galway, Carna, Co. 12 Galway, Ireland, H91 V8Y1. 13 5Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg, 14 Sweden. 15 6AquaBioTech Group, Central Complex, Naggar Street, Targa Gap, Mosta, MST 1761, Malta 16 G.C. 17 7Irish Seaweed Research Group, Ryan Institute and School of Natural Sciences, National 18 University of Ireland Galway, Ireland, H91 TK33. 19 8Aquaculture Nutrition and Aquafeed Research Unit, Carna Research Station, Ryan Institute and 20 School of Natural Sciences, National University of Ireland Galway, Carna, Co. Galway, Ireland, 21 H91 V8Y1. 22 9 Department of Animal Production, Welfare and Veterinary Science, Harper Adams University, 23 Newport, Shropshire, UK, TF10 8NB.
    [Show full text]
  • International Journal of Systematic and Evolutionary Microbiology
    International Journal of Systematic and Evolutionary Microbiology International Code of Nomenclature of Prokaryotes --Manuscript Draft-- Manuscript Number: IJSEM-D-15-00747R1 Full Title: International Code of Nomenclature of Prokaryotes Short Title: ICNP (2008 Revision) Article Type: ICSP Minutes Section/Category: ICSP Matters Keywords: International Code of Prokaryotic Nomenclature; Rules; principles; general considerations; Judicial Commission; prokaryotic names Corresponding Author: George M Garrity, Sc.D. Michigan State University East Lansing, MI UNITED STATES First Author: Charles T Parker, B.Sc. Order of Authors: Charles T Parker, B.Sc. Brian J Tindall, Ph.D. George M Garrity, Sc.D. Manuscript Region of Origin: UNITED STATES Abstract: This volume contains the edition of the International Code of Nomenclature of Prokaryotes that was presented in draft form and available for comment at the Plenary Session of the Fourteenth International Congress of Bacteriology and Applied Microbiology (BAM), Montréal, 2014, together with updated lists of conserved and rejected bacterial names and of Opinions issued by the Judicial Commission. As in the past it brings together those changes accepted, published and documented by the ICSP and the Judicial Commission since the last revision was published. Several new appendices have been added to this edition. Appendix 11 addresses the appropriate application of the Candidatus concept, Appendix 12 contains the history of the van Niel Prize, and Appendix 13 contains the summaries of Congresses. Downloaded from www.microbiologyresearch.org by Powered by Editorial Manager® and ProduXionIP: 159.178.89.30 Manager® from Aries Systems Corporation On: Thu, 22 Jun 2017 13:58:02 ManuscriptClick Including here to download References Manuscript (Word document) Including References (Word document) ICNP_2008_Chapters_1-4_Final_20151119a.docx Prokaryotic Code (2008 Revision) ICSP Matters International Code of Nomenclature of Prokaryotes Prokaryotic Code (2008 Revision) Charles T.
    [Show full text]
  • Microbial Mg-Rich Carbonates in an Extreme Alkaline Lake (Las Eras, Central Spain)
    fmicb-10-00148 February 8, 2019 Time: 18:50 # 1 ORIGINAL RESEARCH published: 07 February 2019 doi: 10.3389/fmicb.2019.00148 Microbial Mg-rich Carbonates in an Extreme Alkaline Lake (Las Eras, Central Spain) M. Esther Sanz-Montero1*, Óscar Cabestrero1 and Mónica Sánchez-Román2 1 Department of Mineralogy and Petrology, Faculty of Geological Science, Complutense University of Madrid, Madrid, Spain, 2 Department of Geology and Geochemistry, Faculty of Science, Vrije Universiteit Amsterdam, Amsterdam, Netherlands This paper provides strong evidence for the contribution of the phylum Firmicutes in mediating the primary precipitation of Mg-rich carbonates (hydromagnesite, dolomite, magnesite, and nesquehonite) in recent microbialites from a highly alkaline and ephemeral inland lake (Las Eras, Central Spain). The carbonate mineral precipitation occurs sequentially as the microbial mats decay. Scanning electron microscopy (SEM) provided solid proof that hydromagnesite nucleation is initiated on the exopolymeric substances (EPS) and the microbial cells associated to the microbial mat degradation areas. The progressive mineralization of the EPS and bacterial cells by hydromagnesite Edited by: plate-like crystals on their surface, results in the entombment of the bacteria and Gordon T. Taylor, formation of radiating aggregates of hydromagnesite crystals. The hydrous phases, Stony Brook University, United States mostly hydromagnesite, were produced at a high percentage in the first stages of Reviewed by: Crisogono Vasconcelos, the microbial degradation of organic matter. When the availability of organic substrates ETH Zürich, Switzerland declines, the heterotrophs tend to reduce their number and metabolic activity, remain Jozef Kazmierczak, Institute of Paleobiology (PAN), dormant. At this stage, the anhydrous phases, dolomite and magnesite, nucleate on Poland bacterial nanoglobules and/or collapsed cells.
    [Show full text]