A Cuckoo Filter Modification Inspired by Bloom Filter
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Algorithmic Improvements for Fast Concurrent Cuckoo Hashing Presentation by Nir David
Algorithmic Improvements for Fast Concurrent Cuckoo Hashing Presentation by Nir David Xiaozhou Li , David G. Andersen , Michael Kaminsky , Michael J. Freedman Overview Background and Related Work Hash Tables Concurrency Control Mechanisms Naive use of concurrency control fails Principles to Improve Concurrency Concurrent Cuckoo Hashing Cuckoo Hashing Prior Work in Concurrent Cuckoo Algorithmic Optimizations Fine-grained Locking Optimizing for Intel TSX Evaluation Concurrent hash table Provides: Lookup, Insert and Delete operations. On Lookup, a value is returned for the given key, or “does not exist” if the key cannot be found. On Insert, the hash table returns success, or an error code to indicate whether the hash table is full or the key is already exists. Delete simply removes the key’s entry from the hash table. Several definitions before we go further Open Addressing: a method for handling collisions. A collision is resolved by probing, or searching through alternate locations in the array until either the target record is found, or an unused array slot is found. Linear probing - in which the interval between probes is fixed — often at 1 Quadratic probing - in which the interval between probes increases linearly Linear Probing: f(i) = i Insert(k,x) // assume unique keys 1. index = hash(key) % table_size; 2. if (table[index]== NULL) table[index]= new key_value_pair(key, x); 3. Else { • index++; • index = index % table_size; • goto 2; } 89 mod 10 = 9 Linear Probing Example 18 mod 10 = 8 Insert 89, 18, 49, 58, 69 58 mod 10 = 8 49 mod 10 = 9 Several definitions before we go further Chaining: another possible way to resolve collisions. -
A General-Purpose High Accuracy and Space Efficient
countBF: A General-purpose High Accuracy and Space Efficient Counting Bloom Filter 1st Sabuzima Nayak 2nd Ripon Patgiri, Senior Member, IEEE Dept. Computer Science & Engineering Dept. Computer Science & Engineering National Institute of Technology Silchar National Institute of Technology Silchar Cachar-788010, Assam, India Cachar-788010, Assam, India sabuzima [email protected] [email protected] Abstract—Bloom Filter is a probabilistic data structure for Delete operation is crucial for Bloom Filter. Suppose a the membership query, and it has been intensely experimented database management system integrates Bloom Filter to avoid in various fields to reduce memory consumption and enhance unnecessary disk accesses and enhance its performance sig- a system’s performance. Bloom Filter is classified into two key categories: counting Bloom Filter (CBF), and non-counting nificantly with a tiny amount of memory [18]. Thus, the Bloom Filter. CBF has a higher false positive probability than database management system requires to insert, query, and standard Bloom Filter (SBF), i.e., CBF uses a higher memory delete operation for which conventional Bloom Filter is not footprint than SBF. But CBF can address the issue of the false suitable. Therefore, counting Bloom Filter is used in such negative probability. Notably, SBF is also false negative free, but kind of requirements. Another example is a network router. it cannot support delete operations like CBF. To address these issues, we present a novel counting Bloom Filter based on SBF Older packets are removed from the router databases. There- and 2D Bloom Filter, called countBF. countBF uses a modified fore, the router requires counting Bloom Filter. -
Efficient Data Structures for High Speed Packet Processing
Efficient data structures for high speed packet processing Paolo Giaccone Notes for the class on \Computer aided simulations and performance evaluation " Politecnico di Torino November 2020 Outline 1 Applications 2 Theoretical background 3 Tables Direct access arrays Hash tables Multiple-choice hash tables Cuckoo hash 4 Set Membership Problem definition Application Fingerprinting Bit String Hashing Bloom filters Cuckoo filters 5 Longest prefix matching Patricia trie Giaccone (Politecnico di Torino) Hash, Cuckoo, Bloom and Patricia Nov. 2020 2 / 93 Applications Section 1 Applications Giaccone (Politecnico di Torino) Hash, Cuckoo, Bloom and Patricia Nov. 2020 3 / 93 Applications Big Data and probabilistic data structures 3 V's of Big Data Volume (amount of data) Velocity (speed at which data is arriving and is processed) Variety (types of data) Main efficiency metrics for data structures space time to write, to update, to read, to delete Probabilistic data structures based on different hashing techniques approximated answers, but reliable estimation of the error typically, low memory, constant query time, high scaling Giaccone (Politecnico di Torino) Hash, Cuckoo, Bloom and Patricia Nov. 2020 4 / 93 Applications Probabilistic data structures Membership answer approximate membership queries e.g., Bloom filter, counting Bloom filter, quotient filter, Cuckoo filter Cardinality estimate the number of unique elements in a dataset. e.g., linear counting, probabilistic counting, LogLog and HyperLogLog Frequency in streaming applications, find the frequency of some element, filter the most frequent elements in the stream, detect the trending elements, etc. e.g., majority algorithm, frequent algorithm, count sketch, count{min sketch Giaccone (Politecnico di Torino) Hash, Cuckoo, Bloom and Patricia Nov. -
Cuckoo Hashing
Cuckoo Hashing Outline for Today ● Towards Perfect Hashing ● Reducing worst-case bounds ● Cuckoo Hashing ● Hashing with worst-case O(1) lookups. ● The Cuckoo Graph ● A framework for analyzing cuckoo hashing. ● Analysis of Cuckoo Hashing ● Just how fast is cuckoo hashing? Perfect Hashing Collision Resolution ● Last time, we mentioned three general strategies for resolving hash collisions: ● Closed addressing: Store all colliding elements in an auxiliary data structure like a linked list or BST. ● Open addressing: Allow elements to overflow out of their target bucket and into other spaces. ● Perfect hashing: Choose a hash function with no collisions. ● We have not spoken on this last topic yet. Why Perfect Hashing is Hard ● The expected cost of a lookup in a chained hash table is O(1 + α) for any load factor α. ● For any fixed load factor α, the expected cost of a lookup in linear probing is O(1), where the constant depends on α. ● However, the expected cost of a lookup in these tables is not the same as the expected worst-case cost of a lookup in these tables. Expected Worst-Case Bounds ● Theorem: Assuming truly random hash functions, the expected worst-case cost of a lookup in a linear probing hash table is Ω(log n). ● Theorem: Assuming truly random hash functions, the expected worst-case cost of a lookup in a chained hash table is Θ(log n / log log n). ● Proofs: Exercise 11-1 and 11-2 from CLRS. ☺ Perfect Hashing ● A perfect hash table is one where lookups take worst-case time O(1). ● There's a pretty sizable gap between the expected worst-case bounds from chaining and linear probing – and that's on expected worst-case, not worst-case. -
Cuckoo Hashing
Cuckoo Hashing Rasmus Pagh* BRICSy, Department of Computer Science, Aarhus University Ny Munkegade Bldg. 540, DK{8000 A˚rhus C, Denmark. E-mail: [email protected] and Flemming Friche Rodlerz ON-AIR A/S, Digtervejen 9, 9200 Aalborg SV, Denmark. E-mail: ff[email protected] We present a simple dictionary with worst case constant lookup time, equal- ing the theoretical performance of the classic dynamic perfect hashing scheme of Dietzfelbinger et al. (Dynamic perfect hashing: Upper and lower bounds. SIAM J. Comput., 23(4):738{761, 1994). The space usage is similar to that of binary search trees, i.e., three words per key on average. Besides being conceptually much simpler than previous dynamic dictionaries with worst case constant lookup time, our data structure is interesting in that it does not use perfect hashing, but rather a variant of open addressing where keys can be moved back in their probe sequences. An implementation inspired by our algorithm, but using weaker hash func- tions, is found to be quite practical. It is competitive with the best known dictionaries having an average case (but no nontrivial worst case) guarantee. Key Words: data structures, dictionaries, information retrieval, searching, hash- ing, experiments * Partially supported by the Future and Emerging Technologies programme of the EU under contract number IST-1999-14186 (ALCOM-FT). This work was initiated while visiting Stanford University. y Basic Research in Computer Science (www.brics.dk), funded by the Danish National Research Foundation. z This work was done while at Aarhus University. 1 2 PAGH AND RODLER 1. INTRODUCTION The dictionary data structure is ubiquitous in computer science. -
Incremental Edge Orientation in Forests Michael A
Incremental Edge Orientation in Forests Michael A. Bender Stony Brook University [email protected] Tsvi Kopelowitz Bar-Ilan University [email protected] William Kuszmaul Massachusetts Institute of Technology [email protected] Ely Porat Bar-Ilan University [email protected] Clifford Stein Columbia University cliff@ieor.columbia.edu Abstract For any forest G = (V, E) it is possible to orient the edges E so that no vertex in V has out-degree greater than 1. This paper considers the incremental edge-orientation problem, in which the edges E arrive over time and the algorithm must maintain a low-out-degree edge orientation at all times. We give an algorithm that maintains a maximum out-degree of 3 while flipping at most O(log log n) edge orientations per edge insertion, with high probability in n. The algorithm requires worst-case time O(log n log log n) per insertion, and takes amortized time O(1). The previous state of the art required up to O(log n/ log log n) edge flips per insertion. We then apply our edge-orientation results to the problem of dynamic Cuckoo hashing. The problem of designing simple families H of hash functions that are compatible with Cuckoo hashing has received extensive attention. These families H are known to satisfy static guarantees, but do not come typically with dynamic guarantees for the running time of inserts and deletes. We show how to transform static guarantees (for 1-associativity) into near-state-of-the-art dynamic guarantees (for O(1)-associativity) in a black-box fashion. -
Vivid Cuckoo Hash: Fast Cuckoo Table Building in SIMD
ViViD Cuckoo Hash: Fast Cuckoo Table Building in SIMD Flaviene Scheidt de Cristo, Eduardo Cunha de Almeida, Marco Antonio Zanata Alves 1Informatics Department – Federal Univeristy of Parana´ (UFPR) – Curitiba – PR – Brazil ffscristo,eduardo,[email protected] Abstract. Hash Tables play a lead role in modern databases systems during the execution of joins, grouping, indexing, removal of duplicates, and accelerating point queries. In this paper, we focus on Cuckoo Hash, a technique to deal with collisions guaranteeing that data is retrieved with at most two memory ac- cess in the worst case. However, building the Cuckoo Table with the current scalar methods is inefficient when treating the eviction of the colliding keys. We propose a Vertically Vectorized data-dependent method to build Cuckoo Ta- bles - ViViD Cuckoo Hash. Our method exploits data parallelism with AVX-512 SIMD instructions and transforms control dependencies into data dependencies to make the build process faster with an overall reduction in response time by 90% compared to the scalar Cuckoo Hash. 1. Introduction The usage of hash tables in the execution of joins, grouping, indexing, and removal of duplicates is a widespread technique on modern database systems. In the particular case of joins, hash tables do not require nested loops and sorting, dismissing the need to execute multiple full scans over the same relation (table). However, a hash table is as good as its strategy to avoid or deal with collisions. Cuckoo Hash [Pagh and Rodler 2004] stands among the most efficient ways of dealing with collisions. Using open addressing, it does not use additional structures and pointers - as Chained Hash [Cormen et al. -
Quotient Hash Tables-Efficiently Detecting Duplicates in Streaming
Quotient Hash Tables - Efficiently Detecting Duplicates in Streaming Data Rémi Gérauda,c, Marius Lombard-Platet∗a,b, and David Naccachea,c aDépartement d’informatique de l’ENS, École normale supérieure, CNRS, PSL Research University, Paris, France bBe-Studys, Geneva, Switzerland cIngenico Labs Advanced Research, Paris, France Abstract This article presents the Quotient Hash Table (QHT) a new data structure for duplicate detection in unbounded streams. QHTs stem from a corrected analysis of streaming quotient filters (SQFs), resulting in a 33% reduction in memory usage for equal performance. We provide a new and thorough analysis of both algorithms, with results of interest to other existing constructions. We also introduce an optimised version of our new data structure dubbed Queued QHT with Duplicates (QQHTD). Finally we discuss the effect of adversarial inputs for hash-based duplicate filters similar to QHT. 1 Introduction and Motivation bits. We consider in this paper the following problem: given a pos- Proof. A perfect duplicate filter must be able to store all sibly infinite stream of symbols, detect whether a given sym- streams Ei = (e1,...,en), i.e. must be able to store any bol appeared somewhere in the stream. It turns out that in- subset of Γ, which we denote by (Γ). Given that there are P stances of this duplicate detection problem arise naturally in (Γ) = 2 Γ = 2U of them, according to information theory |P | | | many applications: backup systems [11] or Web caches [10], any such filter requires at least log ( (Γ) ) = log (2U )= U 2 |P | 2 search engine databases or click counting in web advertise- bits of storage. -
Cuckoo Hashing and Cuckoo Filters
Cuckoo Hashing and Cuckoo Filters Noah Fleming May 17, 2018 1 Preliminaries A dictionary is an abstract data type that stores a collection of elements, located by their key. It supports operations: insert, delete and lookup. Implementations of dictionaries vary by the ways their keys are stored and retrieved. A hash table is a particular implementation of a dictionary that allows for expected constant-time operations. Indeed, in many cases, hash tables turn out to be on average more efficient than other dictionary implementations, such as search trees, both in terms of space and runtime. A hash table is comprised of a table T whose entries are called buckets. To insert a (key, value) pair, whose key is x, into the table, a hash function is used to select which bucket to store x. That is, a hash function is a map h : U! [T ] on a universe U mapping keys to locations in T . We will be particularly interested in the following strong family of universal hash functions. k-Universal Hash Functions: A family H of hash functions h : U! [T ] is k-universal if for any k distinct elements x1; : : : ; xk 2 U, and any outcome y1; : : : ; yk 2 [T ] k Pr [h(x1) = y1; : : : ; h(xk) = yk] ≤ 1=jT j ; h2H where the probability is taken as uniform over h 2 H. Typically, the universe U to which our keys belong is much larger than the size of our table T , and so collisions in the hash table are often unavoidable. Therefore, the hash func- tion attempts to minimize the number of collisions because collisions lead to longer insertion time, or even insertions failing. -
Mitigating Asymmetric Read and Write Costs in Cuckoo Hashing for Storage Systems
Mitigating Asymmetric Read and Write Costs in Cuckoo Hashing for Storage Systems Yuanyuan Sun, Yu Hua, Zhangyu Chen, and Yuncheng Guo, Huazhong University of Science and Technology https://www.usenix.org/conference/atc19/presentation/sun This paper is included in the Proceedings of the 2019 USENIX Annual Technical Conference. July 10–12, 2019 • Renton, WA, USA ISBN 978-1-939133-03-8 Open access to the Proceedings of the 2019 USENIX Annual Technical Conference is sponsored by USENIX. Mitigating Asymmetric Read and Write Costs in Cuckoo Hashing for Storage Systems Yuanyuan Sun, Yu Hua*, Zhangyu Chen, Yuncheng Guo Wuhan National Laboratory for Optoelectronics, School of Computer Huazhong University of Science and Technology *Corresponding Author: Yu Hua ([email protected]) Abstract The explosion of data volume leads to nontrivial challenge on storage systems, especially on the support for query ser- In storage systems, cuckoo hash tables have been widely vices [8, 12, 49]. Moreover, write-heavy workloads further used to support fast query services. For a read, the cuckoo exacerbate the storage performance. Much attention has hashing delivers real-time access with O(1) lookup com- been paid to alleviate the pressure on storage systems, which plexity via open-addressing approach. For a write, most demands the support of low-latency and high-throughput concurrent cuckoo hash tables fail to efficiently address the queries, such as top-k query processing [30, 33], optimizing problem of endless loops during item insertion due to the big data queries via automated program reasoning [42], of- essential property of hash collisions. The asymmetric fea- fering practical private queries on public data [47], and opti- ture of cuckoo hashing exhibits fast-read-slow-write perfor- mizing search performance within memory hierarchy [9]. -
An Overview of Cuckoo Hashing Charles Chen
An Overview of Cuckoo Hashing Charles Chen 1 Abstract Cuckoo Hashing is a technique for resolving collisions in hash tables that produces a dic- tionary with constant-time worst-case lookup and deletion operations as well as amortized constant-time insertion operations. First introduced by Pagh in 2001 [3] as an extension of a previous static dictionary data structure, Cuckoo Hashing was the first such hash table with practically small constant factors [4]. Here, we first outline existing hash table collision poli- cies and go on to analyze the Cuckoo Hashing scheme in detail. Next, we give an overview of (c; k)-universal hash families, and finally, we summarize some selected experimental results comparing the varied collision policies. 2 Introduction The dictionary is a fundamental data structure in computer science, allowing users to store key-value pairs and look up by key the corresponding value in the data structure. The hash table provides one of the most common and one of the fastest implementations of the dictionary data structure, allowing for amortized constant-time lookup, insertion and deletion operations.1 In its archetypal form, a hash function h computed on the space of keys is used to map each key to a location in a set of bucket locations fb0; ··· ; br−1g. The key, as well as, potentially, some auxiliary data (termed the value), is stored at the appropriate bucket location upon insertion. Upon deletion, the key with its value is removed from the appropriate bucket, and in lookup, such a key-value pair, if it exists, is retrieved by looking at the bucket location corresponding to the hashed key value. -
High-Performance Hash Tables for Networking Applications
Cuckoo++ Hash Tables: High-Performance Hash Tables for Networking Applications Nicolas Le Scouarnec Technicolor ABSTRACT identifying the connection using its 5-tuple (protocol, source Hash tables are an essential data-structure for numerous address, destination address, source port and destination networking applications (e.g., connection tracking, rewalls, port) and mapping an application-specic value to this 5- network address translators). Among these, cuckoo hash tuple. As each connection has its own state, the number of tables provide excellent performance by allowing lookups entries in the system grows with the number of ows. As to be processed with very few memory accesses (2 to 3 per each route sees many concurrent ows going over it, the lookup). Yet, for large tables, cuckoo hash tables remain mem- scale is much higher: when routing and forwarding require ory bound and each memory access impacts performance. In to consider tens of thousands of routes (L3 information), this paper, we propose algorithmic improvements to cuckoo connection tracking requires to track millions of ows. To hash tables allowing to eliminate some unnecessary mem- deal with these requirements, the association is often stored ory accesses; these changes are conducted without altering in a hash table to access it eciently. the properties of the original cuckoo hash table so that all High-performance hash tables often rely on bucketized existing theoretical analysis remain applicable. On a single cuckoo hash-table [5, 8, 9, 14, 16, 19, 29] for they feature core, our hash table achieves 37M lookups per second for excellent read performance by guaranteeing that the state positive lookups (i.e., when the key looked up is present in associated to some connection can be found in less than the table), and 60M lookups per second for negative lookups, three memory accesses.