Crosstalk Between Auxin and Gibberellin During Stalk Elongation
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Commentary Expansins: Proteins That Promote Cell Wall Loosening in Plants Lincoln Taiz Biology Departent, University of California, Santa Cruz, CA 95064
Proc. Nadl. Acad. Sci. USA Vol. 91, pp. 7387-7389, August 1994 Commentary Expansins: Proteins that promote cell wall loosening in plants Lincoln Taiz Biology Departent, University of California, Santa Cruz, CA 95064 It was July 7, 1912, and Harry Houdini, iri against the cell wall, which exerts aa This domain is embedded in a second the company of a bevy of dutiful report- counter force on the protoplast, discour network, pectic polysaccharides. The ers, was going to perform one of hissaging further water uptake. Ifthe osmotic pectic polysaccharides, rich in uronic greatest escapes, from a barge floating inigradient is sufficient, however, water willI acid residues, can form cross-links based the middle of the East River in Newvcontinue to enter the cell for a time, andI on calcium bridges and other ionic inter- York. First he was shackled in leg irons enormous hydrostatic turgor pressures; actions. Structural proteins form a third two pairs of handcuffs, and elbow irons. can build up, distending the wall to its; interlocking network. The latter may in- Then he was crammed into a sturdy elastic limits. But the expanding proto- terweave through the other two domains, wooden crate, 40 inches x 22 inches x 24Iplast does not merely out-muscle the forming a "warp and weft" structure (6). inches, and the lid was nailed shut and wall, like Houdini kicking out the sides ofr Such models, while useful for wall bio- reinforced with steel bands. For addedIhis box. Rather, the protoplast releases chemists, tell us little about the mecha- effect, the box was given a further wrap-*unidentified "wall-loosening factors" nism of wall extension. -
Arabidopsis Thaliana
Downloaded from genome.cshlp.org on September 28, 2021 - Published by Cold Spring Harbor Laboratory Press RESEARCH A Physical Map of Chromosome 2 of Arabidopsis thaliana Eve Ann Zachgo, 2,4 Ming Li Wang, 1'2'4 Julia Dewdney, 1'2 David Bouchez, 3 Christine Carnilleri, 3 Stephen Belmonte, 2 Lu Huang, 2 Maureen Dolan, 2 and Howard M. Goodman 1'2'5 1Department of Genetics, Harvard Medical School and 2Department of Molecular Biology, Massachusetts General Hospital, Boston, Massachusetts 02114; 3Laboratoire de Biologie Cellulaire, Institut National de la Recherche Agronomique (INRA), 78026 Versailles CEDEX, France A yeast artificial chromosome (YAC] physical map of chromosome 2 of Arabidopsis thaliana has been constructed by hybridization of 69 DNA markers and 61 YAC end probes to gridded arrays of YAC clones. Thirty-four YACs in four contigs define the chromosome. Complete closure of the map was not attained because some regions of the chromosome were repetitive or were not represented in the YAC library. Based on the sizes of the YACs and their coverage of the chromosome, the length of chromosome 2 is estimated to be at least 18 Mb. These data provide the means for immediately identifying the YACs containing a genetic locus mapped on Arabidopsis chromosome 2. The small flowering plant Arabidopsis thaliana is ters (Maluszynska and Heslop-Harrison 1991; A1- an excellent model system for metabolic, genetic, bini 1994; Copenhaver et al. 1995). We present and developmental studies in plants. Its haploid here a YAC contig physical map of chromosome nuclear genome is small (-100 Mb), consisting of 2 of A. -
Cell Wall Loosening by Expansins1
Plant Physiol. (1998) 118: 333–339 Update on Cell Growth Cell Wall Loosening by Expansins1 Daniel J. Cosgrove* Department of Biology, 208 Mueller Laboratory, Pennsylvania State University, University Park, Pennsylvania 16802 In his 1881 book, The Power of Movement in Plants, Darwin alter the bonding relationships of the wall polymers. The described a now classic experiment in which he directed a growing wall is a composite polymeric structure: a thin tiny shaft of sunlight onto the tip of a grass seedling. The weave of tough cellulose microfibrils coated with hetero- region below the coleoptile tip subsequently curved to- glycans (hemicelluloses such as xyloglucan) and embedded ward the light, leading to the notion of a transmissible in a dense, hydrated matrix of various neutral and acidic growth stimulus emanating from the tip. Two generations polysaccharides and structural proteins (Bacic et al., 1988; later, follow-up work by the Dutch plant physiologist Fritz Carpita and Gibeaut, 1993). Like other polymer compos- Went and others led to the discovery of auxin. In the next ites, the plant cell wall has rheological (flow) properties decade, another Dutchman, A.J.N. Heyn, found that grow- intermediate between those of an elastic solid and a viscous ing cells responded to auxin by making their cell walls liquid. These properties have been described using many more “plastic,” that is, more extensible. This auxin effect different terms: plasticity, viscoelasticity, yield properties, was partly explained in the early 1970s by the discovery of and extensibility are among the most common. It may be “acid growth”: Plant cells grow faster and their walls be- attractive to think that wall stress relaxation and expansion come more extensible at acidic pH. -
Chemists Find Binding Site of Protein That Allows Plant Growth 24 September 2013
Chemists find binding site of protein that allows plant growth 24 September 2013 Online Early Edition. Hong and Daniel Cosgrove, professor and holder of the Eberly Chair in Biology at Penn State University, are the lead authors. The research team also includes Tuo Wang, an Iowa State graduate student in chemistry and a graduate assistant for the Ames Laboratory; Linghao Zhong, an associate professor of chemistry at Penn State Mont Alto; Yong Bum Park, a post-doctoral scholar in biology at Penn State; plus Marc Caporini and Melanie Rosay of the Bruker BioSpin Corp. in Billerica, Mass. Three grants from the U.S. Department of Energy supported the research project. This illustration shows the parts of the expansin protein (magenta) that bind to the surface of specific regions of Iowa State's Hong has long used solid-state plant cell walls. Credit: Illustration courtesy of Mei nuclear magnetic resonance (NMR) spectroscopy Hong/Iowa State University. to study structural biology, including the mechanism used by the flu virus to infect host cells. But in this case, that technology wasn't sensitive enough to identify the binding site of the expansin protein. Using a new and super-sensitive instrument, researchers have discovered where a protein binds So the researchers – working with specialists from to plant cell walls, a process that loosens the cell the Bruker BioSpin Corp., a manufacturer of walls and makes it possible for plants to grow. scientific instruments – used a technology called dynamic nuclear polarization (DNP), to enhance the Researchers say the discovery could one day lead sensitivity of spectroscopy instruments. -
Phylogenetic Position and Generic Limits of Arabidopsis (Brassicaceae)
PHYLOGENETIC POSITION Steve L. O'Kane, Jr.2 and Ihsan A. 3 AND GENERIC LIMITS OF Al-Shehbaz ARABIDOPSIS (BRASSICACEAE) BASED ON SEQUENCES OF NUCLEAR RIBOSOMAL DNA1 ABSTRACT The primary goals of this study were to assess the generic limits and monophyly of Arabidopsis and to investigate its relationships to related taxa in the family Brassicaceae. Sequences of the internal transcribed spacer region (ITS-1 and ITS-2) of nuclear ribosomal DNA, including 5.8S rDNA, were used in maximum parsimony analyses to construct phylogenetic trees. An attempt was made to include all species currently or recently included in Arabidopsis, as well as species suggested to be close relatives. Our ®ndings show that Arabidopsis, as traditionally recognized, is polyphyletic. The genus, as recircumscribed based on our results, (1) now includes species previously placed in Cardaminopsis and Hylandra as well as three species of Arabis and (2) excludes species now placed in Crucihimalaya, Beringia, Olimar- abidopsis, Pseudoarabidopsis, and Ianhedgea. Key words: Arabidopsis, Arabis, Beringia, Brassicaceae, Crucihimalaya, ITS phylogeny, Olimarabidopsis, Pseudoar- abidopsis. Arabidopsis thaliana (L.) Heynh. was ®rst rec- netic studies and has played a major role in un- ommended as a model plant for experimental ge- derstanding the various biological processes in netics over a half century ago (Laibach, 1943). In higher plants (see references in Somerville & Mey- recent years, many biologists worldwide have fo- erowitz, 2002). The intraspeci®c phylogeny of A. cused their research on this plant. As indicated by thaliana has been examined by Vander Zwan et al. Patrusky (1991), the widespread acceptance of A. (2000). Despite the acceptance of A. -
Agrobacterium-Mediated Transformation of Tomato (Solanum Lycopersicum L.) Using the Expansin 10 (Csexp10) Gene
Agrobacterium-mediated transformation of tomato (Solanum lycopersicum L.) using the expansin 10 (CsEXP10) gene Y.D. Sun*, W.R. Luo*, S.Y. Sun and L. Ni School of Horticulture and Landscape Architecture, Henan Institute of Science and Technology, Xinxiang, Henan, China *These authors contributed equally to this study. Corresponding author: Y.D. Sun E-mail: [email protected] Genet. Mol. Res. 14 (4): 16215-16221 (2015) Received June 28, 2015 Accepted September 28, 2015 Published December 8, 2015 DOI http://dx.doi.org/10.4238/2015.December.8.11 ABSTRACT. The cucumber expansin 10 (CsEXP10) gene was previously cloned from young cucumber fruits but its role has not been defined. To determine the role of this gene in plant growth and development, a CsEXP10 gene transformation system was established. The open reading frame of the gene was inserted behind the CaMV35S promoter of vector pCAMBIA1301, and the construct was introduced into tomato plants by Agrobacterium-mediated transformation. In total, 19 kanamycin-positive lines were produced and nine independent transgenic lines were identified by β-glucuronidase and polymerase chain reaction (PCR) analysis. Quantitative real-time PCR analysis showed that levels of the CsEXP10 transcript were higher in transgenic lines than in a non-transgenic line. Key words: CsEXP10; GUS-staining assay; Regeneration; Tomato (Solanum lycopersicum L.); Transformation system Genetics and Molecular Research 14 (4): 16215-16221 (2015) ©FUNPEC-RP www.funpecrp.com.br Y.D. Sun et al. 16216 INTRODUCTION The expansin genes belong to a large gene superfamily and are found throughout the plant kingdom (Cosgrove, 1999; Li et al., 2002; Carey and Cosgrove, 2007). -
Biogeography and Diversification of Brassicales
Molecular Phylogenetics and Evolution 99 (2016) 204–224 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Biogeography and diversification of Brassicales: A 103 million year tale ⇑ Warren M. Cardinal-McTeague a,1, Kenneth J. Sytsma b, Jocelyn C. Hall a, a Department of Biological Sciences, University of Alberta, Edmonton, Alberta T6G 2E9, Canada b Department of Botany, University of Wisconsin, Madison, WI 53706, USA article info abstract Article history: Brassicales is a diverse order perhaps most famous because it houses Brassicaceae and, its premier mem- Received 22 July 2015 ber, Arabidopsis thaliana. This widely distributed and species-rich lineage has been overlooked as a Revised 24 February 2016 promising system to investigate patterns of disjunct distributions and diversification rates. We analyzed Accepted 25 February 2016 plastid and mitochondrial sequence data from five gene regions (>8000 bp) across 151 taxa to: (1) Available online 15 March 2016 produce a chronogram for major lineages in Brassicales, including Brassicaceae and Arabidopsis, based on greater taxon sampling across the order and previously overlooked fossil evidence, (2) examine Keywords: biogeographical ancestral range estimations and disjunct distributions in BioGeoBEARS, and (3) determine Arabidopsis thaliana where shifts in species diversification occur using BAMM. The evolution and radiation of the Brassicales BAMM BEAST began 103 Mya and was linked to a series of inter-continental vicariant, long-distance dispersal, and land BioGeoBEARS bridge migration events. North America appears to be a significant area for early stem lineages in the Brassicaceae order. Shifts to Australia then African are evident at nodes near the core Brassicales, which diverged Cleomaceae 68.5 Mya (HPD = 75.6–62.0). -
Expression of Three Expansin Genes During Development and Maturation of Kyoho Grape Berries
ARTICLE IN PRESS Journal of Plant Physiology 164 (2007) 1675—1682 www.elsevier.de/jplph Expression of three expansin genes during development and maturation of Kyoho grape berries Megumi Ishimarua,Ã, David L. Smithb, Kenneth C. Grossb, Shozo Kobayashic aGraduate School of Agriculture and Biological Sciences, Osaka Prefecture University, Sakai, Osaka 599-8531, Japan bProduce Quality and Safety Laboratory, USDA-ARS, 10300 Baltimore Avenue, Beltsville, MD 20705, USA cDepartment of Grape and Persimmon Research, National Institute of Fruit Tree Science, Akitsu, Hiroshima 729-2494, Japan Received 5 January 2006; accepted 11 July 2006 KEYWORDS Summary Expansin; Expansins are cell-wall-localized proteins that induce loosening of isolated plant cell Gene expression; walls in vitro in a pH-dependent manner, but exhibit no detectable hydrolase or Grape berry; transglycosylase activity. Three putative expansin cDNAs, Vlexp1, Vlexp2, and Ve´raison; Vlexp3 were isolated from a cDNA library made from mature berries of the Kyoho Softening grape. Expression profiles of the 3 genes were analyzed throughout berry development. Accumulation of the Vlexp3 transcript was closely correlated with berry softening, and expression of this gene was detected before ve´raison and markedly increased at ve´raison (onset of berry softening). Expression of Vlexp3 was berry-specific. Vlexp1 and Vlexp2 mRNA accumulation began during the expansion stage of berry development and expression increased for both genes during ripening. Vlexp1 and Vlexp2 mRNA was detected in leaf, tendril and flower tissues and Vlexp2 mRNA was additionally detected in root and seed tissues. These findings suggest that the three expansin genes are associated with cell division or expansion and berry ripening. -
Coordination of Biradial-To-Radial Symmetry and Tissue Polarity by HD
ARTICLE https://doi.org/10.1038/s41467-021-24550-6 OPEN Coordination of biradial-to-radial symmetry and tissue polarity by HD-ZIP II proteins ✉ Monica Carabelli1,4, Luana Turchi1, Giorgio Morelli 2, Lars Østergaard 3,5 , Ida Ruberti1,5,6 & ✉ Laila Moubayidin 3,4 Symmetry establishment is a critical process in the development of multicellular organs and requires careful coordination of polarity axes while cells actively divide within tissues. For- 1234567890():,; mation of the apical style in the Arabidopsis gynoecium involves a bilateral-to-radial sym- metry transition, a stepwise process underpinned by the dynamic distribution of the plant morphogen auxin. Here we show that SPATULA (SPT) and the HECATE (HEC) bHLH pro- teins mediate the final step in the style radialisation process and synergistically control the expression of adaxial-identity genes, HOMEOBOX ARABIDOPSIS THALIANA 3 (HAT3) and ARABIDOPSIS THALIANA HOMEOBOX 4 (ATHB4). HAT3/ATHB4 module drives radialisation of the apical style by promoting basal-to-apical auxin flow and via a negative feedback mechanism that finetune auxin distribution through repression of SPT expression and cyto- kinin sensitivity. Thus, this work reveals the molecular basis of axes-coordination and hor- monal cross-talk during the sequential steps of symmetry transition in the Arabidopsis style. 1 Institute of Molecular Biology and Pathology, National Research Council, Rome, Italy. 2 Research Centre for Genomics and Bioinformatics, Council for Agricultural Research and Economics (CREA), Rome, Italy. 3 Department of Crop Genetics, John Innes Centre, Norwich, UK. 4These authors contributed ✉ equally: Monica Carabelli, Laila Moubayidin. 5These authors jointly supervised this work: Lars Østergaard, Ida Ruberti. -
Two Expansin Genes, Atexpa4 and Atexpb5, Are Redundantly Required for Pollen Tube Growth and Atexpa4 Is Involved in Primary Root Elongation in Arabidopsis Thaliana
G C A T T A C G G C A T genes Article Two Expansin Genes, AtEXPA4 and AtEXPB5, Are Redundantly Required for Pollen Tube Growth and AtEXPA4 Is Involved in Primary Root Elongation in Arabidopsis thaliana Weimiao Liu 1,2, Liai Xu 1,2 , Hui Lin 3 and Jiashu Cao 1,2,4,* 1 Laboratory of Cell and Molecular Biology, Institute of Vegetable Science, Zhejiang University, Hangzhou 310058, China; [email protected] (W.L.); [email protected] (L.X.) 2 Key Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Ministry of Agriculture, Hangzhou 310058, China 3 Crop Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou 350013, China; [email protected] 4 Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Hangzhou 310058, China * Correspondence: [email protected]; Tel.: +86-131-8501-1958 Abstract: The growth of plant cells is inseparable from relaxation and expansion of cell walls. Expansins are a class of cell wall binding proteins, which play important roles in the relaxation of cell walls. Although there are many members in expansin gene family, the functions of most expansin genes in plant growth and development are still poorly understood. In this study, the functions of two expansin genes, AtEXPA4 and AtEXPB5 were characterized in Arabidopsis thaliana. AtEXPA4 and AtEXPB5 displayed consistent expression patterns in mature pollen grains and pollen tubes, but AtEXPA4 also showed a high expression level in primary roots. Two single mutants, atexpa4 and atexpb5, showed normal reproductive development, whereas atexpa4 atexpb5 double mutant was defective in pollen tube growth. Moreover, AtEXPA4 overexpression enhanced primary root Citation: Liu, W.; Xu, L.; Lin, H.; Cao, elongation, on the contrary, knocking out AtEXPA4 made the growth of primary root slower. -
CRISPR/Cas9-Mediated Knockout of HOS1 Reveals Its Role in the Regulation of Secondary Metabolism in Arabidopsis Thaliana
plants Article CRISPR/Cas9-Mediated Knockout of HOS1 Reveals Its Role in the Regulation of Secondary Metabolism in Arabidopsis thaliana Yury Shkryl * , Yulia Yugay, Tatiana Avramenko, Valeria Grigorchuk, Tatiana Gorpenchenko, Olga Grischenko and Victor Bulgakov Federal Scientific Center of the East Asia Terrestrial Biodiversity, Far Eastern Branch, the Russian Academy of Sciences, 690022 Vladivostok, Russia; [email protected] (Y.Y.); [email protected] (T.A.); [email protected] (V.G.); [email protected] (T.G.); [email protected] (O.G.); [email protected] (V.B.) * Correspondence: [email protected] Abstract: In Arabidopsis, the RING finger-containing E3 ubiquitin ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1 (HOS1) functions as a main regulator of the cold signaling. In this study, CRISPR/Cas9-mediated targeted mutagenesis of the HOS1 gene in the first exon was performed. DNA sequencing showed that frameshift indels introduced by genome editing of HOS1 resulted in the appearance of premature stop codons, disrupting the open reading frame. Obtained hos1Cas9 mutant plants were compared with the SALK T-DNA insertion mutant, line hos1-3, in terms of their tolerance to abiotic stresses, accumulation of secondary metabolites and expression levels of genes participating in these processes. Upon exposure to cold stress, enhanced tolerance and expression of cold-responsive genes were observed in both hos1-3 and hos1Cas9 plants. The hos1 mutation caused changes in the synthesis of phytoalexins in transformed cells. The content of glucosinolates (GSLs) was down-regulated by 1.5-times, while flavonol glycosides were up-regulated by 1.2 to 4.2 times in transgenic plants. -
Expression Profiling and Local Adaptation of Boechera Holboellii
CORE Metadata, citation and similar papers at core.ac.uk Provided by DigitalCommons@CalPoly µBlackwellExpression Publishing Ltd profiling and local adaptation of Boechera holboellii populations for water use efficiency across a naturally occurring water stress gradient CHARLES A. KNIGHT HEIKO VOGEL JUERGEN KROYMANN ALICE SHUMATE HANNEKE WITSENBOER and THOMAS MITCHELL-OLDS Abstract We studied the physiological basis of local adaptation to drought in Boechera holboellii, a perennial relative of Arabidopsis thaliana, and used cDNA–AFLPs to identify candidate genes showing differential expression in these populations. We compared two populations of B. holboellii from contrasting water environments in a reciprocal transplant experiment, as well as in a laboratory dry-down experiment. We continuously measured the water con tent of soils using time domain reflectometery (TDR). We compared populations for their water use efficiency (WUE), root/shoot ratios (R:S) and leaf mass per unit area (LMA) in the field and in the laboratory, and identified candidate genes that (i) responded plastically to water stress and (ii) were differentially expressed between the two populations. Genotypes from the drier site had higher WUE, which was attributable to a large reduction in transpi rational water loss. The xeric-adapted population also had increased investment in root bio mass and greater leaf mass per unit area. Reciprocal transplants in the field had significantly greater survival in their native habitat. In total, 450 cDNA-AFLP fragments showed significant changes between drought and control treatments. Furthermore, some genes showed genotype (population)-specific patterns of up- or down-regulation in response to drought. Three hundred cDNA-AFLP bands were sequenced leading to the identification of cDNAs coding for proteins involved in signal transduction, transcriptional regulation, redox regulation, oxidative stress and pathways involved in stress adaptation.