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Interglacial Refugia Preserved High Genetic Diversity of the Chinese Mole Shrew in the Mountains of Southwest China
Heredity (2016) 116, 23–32 & 2016 Macmillan Publishers Limited All rights reserved 0018-067X/16 www.nature.com/hdy ORIGINAL ARTICLE Interglacial refugia preserved high genetic diversity of the Chinese mole shrew in the mountains of southwest China KHe1,2, N-Q Hu1,3, X Chen4,5, J-T Li6 and X-L Jiang1 The mountains of southwest China (MSC) harbor extremely high species diversity; however, the mechanism behind this diversity is unknown. We investigated to what degree the topography and climate change shaped the genetic diversity and diversification in these mountains, and we also sought to identify the locations of microrefugia areas in these mountains. For these purposes, we sampled extensively to estimate the intraspecific phylogenetic pattern of the Chinese mole shrew (Anourosorex squamipes)in southwest China throughout its range of distribution. Two mitochondrial genes, namely, cytochrome b (CYT B) and NADH dehydrogenase subunit 2 (ND2), from 383 archived specimens from 43 localities were determined for phylogeographic and demographic analyses. We used the continuous-diffusion phylogeographic model, extensive Bayesian skyline plot species distribution modeling (SDM) and approximate Bayesian computation (ABC) to explore the changes in population size and distribution through time of the species. Two phylogenetic clades were identified, and significantly higher genetic diversity was preserved in the southern subregion of the mountains. The results of the SDM, continuous-diffusion phylogeographic model, extensive Bayesian skyline plot and ABC analyses were congruent and supported that the Last Interglacial Maximum (LIG) was an unfavorable period for the mole shrews because of a high degree of seasonality; A. squamipes survived in isolated interglacial refugia mainly located in the southern subregion during the LIG and rapidly expanded during the last glacial period. -
Revision of the Mole Genus Mogera (Mammalia: Lipotyphla: Talpidae)
Systematics and Biodiversity 5 (2): 223–240 Issued 25 May 2007 doi:10.1017/S1477200006002271 Printed in the United Kingdom C The Natural History Museum Shin-ichiro Kawada1, 6 , Akio Shinohara2 , Shuji Revision of the mole genus Mogera Kobayashi3 , Masashi Harada4 ,Sen-ichiOda1 & (Mammalia: Lipotyphla: Talpidae) Liang-Kong Lin5 ∗ 1Laboratory of Animal from Taiwan Management and Resources, Graduate School of Bio-Agricultural Sciences, Nagoya University, Nagoya, Aichi 464-8601, Japan Abstract We surveyed the central mountains and southeastern region of Taiwan 2Department of Bio-resources, and collected 11 specimens of a new species of mole, genus Mogera. The specimens Division of Biotechnology, were characterized by a small body size, dark fur, a protruding snout, and a long Frontier Science Research Center, University of Miyazaki tail; these characteristics are distinct from those of the Taiwanese lowland mole, 5200, Kihara, Kiyotake, M. insularis (Swinhoe, 1862). A phylogenetic study of morphological, karyological Miyazaki 889-1692, Japan 3Department of Asian Studies, and molecular characters revealed that Taiwanese moles should be classified as two Chukyo Woman’s University, distinctive species: M. insularis from the northern and western lowlands and the new Yokone-cho, Aichi 474-0011, species from the central mountains and the east and south of Taiwan. The skull of Japan 4Laboratory Animal Center, the new species was slender and delicate compared to that of M. insularis. Although Osaka City University Graduate the karyotypes of two species were identical, the genetic distance between them School of Medical School, Osaka, Osaka 545-8585, Japan was sufficient to justify considering each as a separate species. Here, we present a 5Laboratory of Wildlife Ecology, detailed specific description of the new species and discuss the relationship between Department of Life Science, this species and M. -
Late Miocene Soricidae (Mammalia) Fauna from Tardosbánya (Western Hungary)
Hantkeniana 2, 103-125 (1998) Budapest Late Miocene Soricidae (Mammalia) fauna from Tardosbánya (Western Hungary) Lukács Gy. MÉszÁRos Eötvös Loránd University, Department ofPalaeontology H-I083 Budapest, Ludovika tér 2, Hungary (Wi th 5 figures, 6 tables and 4 plates) The Soricidae (Mamrnalia, Insectivora) elements of the rich and well preserved fossil vertebrate fauna from Tardosbánya limestone quarry (Western Hungary, Gerecse Mountains) are presented. Five species could have been identified from the material: Amblycoptus oligodon KORMOS 1926, Crusafontina konnosi (BACHMAYER& WILSON, 1970), Blarinella dubia (BACHMAYERand WILSON, 1970), Episoricuius gibberodon (PETÉNYI, 1864) and Paenelimnoecus repenningi (BACHMAYER & WILSON, 1970). The occurrence of Crusafantina, B. dubia and P. repenningi indicates that the age of the sarnple is Late Miocene. The morphometrical studies on C. konnosi, and the morphology and the low relative frequency of A. oligodon suggest that the fauna is correlative with the Turolian MN 12 Zone. The occurrence of A. oligodon, C. konnosi and E. gibberodon indicates well watered, forested environment. Introduction The Late Miocene vertebrate fauna from Tardosbánya quarry was colleeted by D. JÁNOSSY Locality (Hungarian Natural History Museum) in 1975. He gave a prelinúnary faunal list of the sample (1981, Tardosbánya is situated at the northern margin only in manuscript form) and deposited the material of the Transdanubian Central Range (Western in the Geological Museum of Hungary (GMH) (in Hungary), about 10 km north from Tatabánya (see the Geological Institute of Hungary). JÁNOSSYlisted Fig. 1). The remains have been found in a sediment- the following soricids: filled fossil shaft in the Jurassic limestone of the Gerecse Mountains, excavated by exploitation in the - "Petenyia" "red marble" quarry near Tardosbánya. -
Uropsilus, Talpidae): Implications for Taxonomy and Conservation Tao Wan1,2†, Kai He1,3† and Xue-Long Jiang1*
Wan et al. BMC Evolutionary Biology 2013, 13:232 http://www.biomedcentral.com/1471-2148/13/232 RESEARCH ARTICLE Open Access Multilocus phylogeny and cryptic diversity in Asian shrew-like moles (Uropsilus, Talpidae): implications for taxonomy and conservation Tao Wan1,2†, Kai He1,3† and Xue-Long Jiang1* Abstract Background: The genus Uropsilus comprises a group of terrestrial, montane mammals endemic to the Hengduan and adjacent mountains. These animals are the most primitive living talpids. The taxonomy has been primarily based on cursory morphological comparisons and the evolutionary affinities are little known. To provide insight into the systematics of this group, we estimated the first multi-locus phylogeny and conducted species delimitation, including taxon sampling throughout their distribution range. Results: We obtained two mitochondrial genes (~1, 985 bp) and eight nuclear genes (~4, 345 bp) from 56 specimens. Ten distinct evolutionary lineages were recovered from the three recognized species, eight of which were recognized as species/putative species. Five of these putative species were found to be masquerading as the gracile shrew mole. The divergence time estimation results indicated that climate change since the last Miocene and the uplift of the Himalayas may have resulted in the diversification and speciation of Uropsilus. Conclusions: The cryptic diversity found in this study indicated that the number of species is strongly underestimated under the current taxonomy. Two synonyms of gracilis (atronates and nivatus) should be given full species status, and the taxonomic status of another three potential species should be evaluated using extensive taxon sampling, comprehensive morphological, and morphometric approaches. Consequently, the conservation status of Uropsilus spp. -
Late Pleistocene and Holocene Small Mammal (Lipotyphla, Rodentia, Lagomorpha) Remains from Medvezhyi Klyk Cave in the Southern Russian Far East
Proceedings of the Zoological Institute RAS Vol. 324, No. 1, 2020, pp. 124–145 10.31610/trudyzin/2020.324.1.124 УДК 599+569:551.](571.63) Late Pleistocene and Holocene small mammal (Lipotyphla, Rodentia, Lagomorpha) remains from Medvezhyi Klyk Cave in the Southern Russian Far East V.E. Omelko1*, Y.V. Kuzmin2, 3, M.P. Tiunov1, L.L. Voyta4 and G.S. Burr5 1Federal Scientific Center of the East Asia Terrestrial Biodiversity, Far Eastern Branch of the Russian Academy of Sciences, 100-Letiya Vladivostoku Ave, 159, Vladivostok 690022, Russia; e-mail: [email protected]; [email protected] 2Sobolev Institute of Geology and Mineralogy, Siberian Branch of the Russian Academy of Sciences, Academika Koptuga Ave., 3, Novosibirsk 630090, Russia; e-mail: [email protected] 3Laboratory of Mesozoic and Cenozoic Continental Ecosystems, Lenina Ave., 36, Tomsk State University, Tomsk 634050, Russia. 4Zoological Institute, Russian Academy of Sciences, Universitetskaya nab., 1, Saint Petersburg 199034, Russia; e-mail: [email protected] 5National Taiwan University, Roosevelt Road, Taipei 10617, Taiwan; e-mail: [email protected] ABSTRACT Late Pleistocene-Holocene faunal complexes of small mammals (Lipotyphla, Rodentia, and Lagomorpha) from the Russian Far East are described for the first time. We used material from the Medvezhyi Klyk Cave, located in Southern Sikhote-Alin. The numerous fossil findings from the cave display a remarkable taxonomic diversity and high degree of preservation. AMS 14C dating used for determination of deposits age. The Holocene sediments were divided into three periods: Early, Middle, and Late. The Pleistocene deposits age was not exactly determined, but under approximately estimation it can reach 50–60 ka. -
Controlled Animals
Environment and Sustainable Resource Development Fish and Wildlife Policy Division Controlled Animals Wildlife Regulation, Schedule 5, Part 1-4: Controlled Animals Subject to the Wildlife Act, a person must not be in possession of a wildlife or controlled animal unless authorized by a permit to do so, the animal was lawfully acquired, was lawfully exported from a jurisdiction outside of Alberta and was lawfully imported into Alberta. NOTES: 1 Animals listed in this Schedule, as a general rule, are described in the left hand column by reference to common or descriptive names and in the right hand column by reference to scientific names. But, in the event of any conflict as to the kind of animals that are listed, a scientific name in the right hand column prevails over the corresponding common or descriptive name in the left hand column. 2 Also included in this Schedule is any animal that is the hybrid offspring resulting from the crossing, whether before or after the commencement of this Schedule, of 2 animals at least one of which is or was an animal of a kind that is a controlled animal by virtue of this Schedule. 3 This Schedule excludes all wildlife animals, and therefore if a wildlife animal would, but for this Note, be included in this Schedule, it is hereby excluded from being a controlled animal. Part 1 Mammals (Class Mammalia) 1. AMERICAN OPOSSUMS (Family Didelphidae) Virginia Opossum Didelphis virginiana 2. SHREWS (Family Soricidae) Long-tailed Shrews Genus Sorex Arboreal Brown-toothed Shrew Episoriculus macrurus North American Least Shrew Cryptotis parva Old World Water Shrews Genus Neomys Ussuri White-toothed Shrew Crocidura lasiura Greater White-toothed Shrew Crocidura russula Siberian Shrew Crocidura sibirica Piebald Shrew Diplomesodon pulchellum 3. -
Zootaxa, a New Species of Crocidura (Soricomorpha: Soricidae) From
Zootaxa 2345: 60–68 (2010) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2010 · Magnolia Press ISSN 1175-5334 (online edition) A new species of Crocidura (Soricomorpha: Soricidae) from southern Vietnam and north-eastern Cambodia PAULINA D. JENKINS1, ALEXEI V. ABRAMOV2,4, VIATCHESLAV V. ROZHNOV3,4 & ANNETTE OLSSON5 1The Natural History Museum, Cromwell Road, London SW7 5BD, UK. E-mail: [email protected] 2Zoological Institute, Russian Academy of Sciences, Universitetskaya nab., 1, Saint-Petersburg, 199034, Russia. E-mail: [email protected] 3A.N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, Leninskii pr., 33, Moscow, 119071, Russia. E-mail: [email protected] 4Joint Vietnam-Russian Tropical Research and Technological Centre, Nguyen Van Huyen, Nghia Do, Cau Giay, Hanoi, Vietnam. E-mail: [email protected] 5Conservation International – Cambodia Programme, P.O. Box 1356, Phnom Penh, Cambodia. E-mail: [email protected] Abstract Knowledge of the Soricidae occurring in Vietnam has recently expanded with the discovery of several species previously unknown to science. Here we describe a new species of white-toothed shrew belonging to the genus Crocidura from lowland areas in southern Vietnam and from a river valley in north-eastern Cambodia. This small to medium sized species is diagnosed on the basis of external features, cranial proportions and morphology of the last upper and lower molars. Comparisons are made with other species of Crocidura known to occur in Vietnam and the biogeography of the regions where the new species has been found, is briefly discussed. Key words: white-toothed shrew, Vietnam, Cambodia Introduction Knowledge of the soricid fauna of South-East Asia and particularly that of Vietnam is still poorly understood, while that of Cambodia is virtually unknown (Jenkins, 1982; Heaney & Timm, 1983; Jenkins & Smith, 1995; Motokawa et al., 2005; Jenkins et al., 2009). -
When Beremendiin Shrews Disappeared in East Asia, Or How We Can Estimate Fossil Redeposition
Historical Biology An International Journal of Paleobiology ISSN: (Print) (Online) Journal homepage: https://www.tandfonline.com/loi/ghbi20 When beremendiin shrews disappeared in East Asia, or how we can estimate fossil redeposition Leonid L. Voyta , Valeriya E. Omelko , Mikhail P. Tiunov & Maria A. Vinokurova To cite this article: Leonid L. Voyta , Valeriya E. Omelko , Mikhail P. Tiunov & Maria A. Vinokurova (2020): When beremendiin shrews disappeared in East Asia, or how we can estimate fossil redeposition, Historical Biology, DOI: 10.1080/08912963.2020.1822354 To link to this article: https://doi.org/10.1080/08912963.2020.1822354 Published online: 22 Sep 2020. Submit your article to this journal View related articles View Crossmark data Full Terms & Conditions of access and use can be found at https://www.tandfonline.com/action/journalInformation?journalCode=ghbi20 HISTORICAL BIOLOGY https://doi.org/10.1080/08912963.2020.1822354 ARTICLE When beremendiin shrews disappeared in East Asia, or how we can estimate fossil redeposition Leonid L. Voyta a, Valeriya E. Omelko b, Mikhail P. Tiunovb and Maria A. Vinokurova b aLaboratory of Theriology, Zoological Institute, Russian Academy of Sciences, Saint Petersburg, Russia; bFederal Scientific Center of the East Asia Terrestrial Biodiversity, Far Eastern Branch of Russian Academy of Sciences, Vladivostok, Russia ABSTRACT ARTICLE HISTORY The current paper first time describes a small Beremendia from the late Pleistocene deposits in the Received 24 July 2020 Koridornaya Cave locality (Russian Far East), which associated with the extinct Beremendia minor. The Accepted 8 September 2020 paper is the first attempt to use a comparative analytical method to evaluate a possible case of redeposition KEYWORDS of fossil remains of this shrew. -
Lipotyphla: Talpidae: Euroscaptor)
Proceedings of the Zoological Institute RAS Vol. 320, No. 2, 2016, рр. 193–220 УДК 599.362 (597) SECRETS OF THE UNDERGROUND VIETNAM: AN UNDERESTIMATED SPECIES DIVERSITY OF ASIAN MOLES (LIPOTYPHLA: TALPIDAE: EUROSCAPTOR) E.D. Zemlemerova1, A.A. Bannikova1, V.S. Lebedev2, V.V. Rozhnov3, 5 and A.V. Abramov4, 5* 1Lomonosov Moscow State University, Vorobievy Gory, 119991 Moscow, Russia; e-mails: [email protected], [email protected] 2Zoological Museum, Moscow State University, B. Nikitskaya 6, 125009 Moscow, Russia; e-mail: [email protected] 3A.N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, Leninskii pr. 33, Moscow 119071, Russia; e-mail: [email protected] 4Zoological Institute, Russian Academy of Sciences, Universitetskaya nab. 1, 199034 Saint Petersburg, Russia; e-mail: [email protected] 5Joint Vietnam-Russian Tropical Research and Technological Centre, Nguyen Van Huyen, Nghia Do, Cau Giay, Hanoi, Vietnam ABSTRACT A study of the Southeast Asian moles of the genus Euroscaptor based on a combined approach, viz. DNA sequence data combined with a multivariate analysis of cranial characters, has revealed a high cryptic diversity of the group. An analysis of mitochondrial cytochrome b gene and five nuclear genes has revealed two deeply divergent clades: the western one (E. klossi + E. malayana + E. longirostris from Sichuan + Euroscaptor spp. from northern Vietnam and Yunnan, China), and the eastern one (E. parvidens s.l. + E. subanura). The pattern of genetic variation in the genus Euroscaptor discovered in the present study provides support for the existence of several cryptic lineages that could be treated as distinct species based on their genetic and morphological distinctness and geographical distribution. -
Phylogeny, Biogeography and Systematic Revision of Plain Long-Nosed Squirrels (Genus Dremomys, Nannosciurinae) Q ⇑ Melissa T.R
Molecular Phylogenetics and Evolution 94 (2016) 752–764 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Phylogeny, biogeography and systematic revision of plain long-nosed squirrels (genus Dremomys, Nannosciurinae) q ⇑ Melissa T.R. Hawkins a,b,c,d, , Kristofer M. Helgen b, Jesus E. Maldonado a,b, Larry L. Rockwood e, Mirian T.N. Tsuchiya a,b,d, Jennifer A. Leonard c a Smithsonian Conservation Biology Institute, Center for Conservation and Evolutionary Genetics, National Zoological Park, Washington DC 20008, USA b Division of Mammals, National Museum of Natural History, Smithsonian Institution, P.O. Box 37012, Washington DC 20013-7012, USA c Estación Biológica de Doñana (EBD-CSIC), Conservation and Evolutionary Genetics Group, Avda. Americo Vespucio s/n, Sevilla 41092, Spain d George Mason University, Department of Environmental Science and Policy, 4400 University Drive, Fairfax, VA 20030, USA e George Mason University, Department of Biology, 4400 University Drive, Fairfax, VA 20030, USA article info abstract Article history: The plain long-nosed squirrels, genus Dremomys, are high elevation species in East and Southeast Asia. Received 25 March 2015 Here we present a complete molecular phylogeny for the genus based on nuclear and mitochondrial Revised 19 October 2015 DNA sequences. Concatenated mitochondrial and nuclear gene trees were constructed to determine Accepted 20 October 2015 the tree topology, and date the tree. All speciation events within the plain-long nosed squirrels (genus Available online 31 October 2015 Dremomys) were ancient (dated to the Pliocene or Miocene), and averaged older than many speciation events in the related Sunda squirrels, genus Sundasciurus. -
An Evolutionary View on the Japanese Talpids Based on Nucleotide Sequences
Mammal Study 30: S19–S24 (2005) © the Mammalogical Society of Japan An evolutionary view on the Japanese talpids based on nucleotide sequences Akio Shinohara1,*, Kevin L. Campbell2 and Hitoshi Suzuki3 1 Department of Bio-resources, Division of Biotechnology, Frontier Science Research Center, University of Miyazaki, Miyazaki 889-1692, Japan 2 Department of Zoology, University of Manitoba, Winnipeg, Manitoba, R3T 2N2, Canada 3 Graduate School of Environmental Earth Science, Hokkaido University, Hokkaido 060-0810, Japan Abstract. Japanese talpid moles exhibit a remarkable degree of species richness and geographic complexity, and as such, have attracted much research interest by morphologists, cytogeneticists, and molecular phylogeneticists. However, a consensus hypothesis pertaining to the evolutionary history and biogeography of this group remains elusive. Recent phylogenetic studies utilizing nucleotide sequences have provided reasonably consistent branching patterns for Japanese talpids, but have generally suffered from a lack of closely related South-East Asian species for sound biogeographic interpretations. As an initial step in achieving this goal, we constructed phylogenetic trees using publicly accessible mitochondrial and nuclear sequences from seven Japanese taxa, and those of related insular and continental species for which nucleotide data is available. The resultant trees support the view that four lineages (Euroscaptor mizura, Mogera tokuade species group [M. tokudae and M. etigo], M. imaizumii, and M. wogura) migrated separately, and in this order, from the continental Asian mainland to Japan. The close relationship of M. tokudae and M. etigo suggests these lineages diverged recently through a vicariant event between Sado Island and Echigo plain. The origin of the two endemic lineages of Japanese shrew-moles, Urotrichus talpoides and Dymecodon pilirostris, remains ambiguous. -
The Preface of “Evolutionary Biology and Phylogeny of the Talpidae”
Mammal Study 30: S3 (2005) © the Mammalogical Society of Japan The preface of “Evolutionary biology and phylogeny of the Talpidae” The symposium “Evolutionary biology and phylogeny pleasure to say “Mission accomplished”! of the Talpidae” was held on the 3rd of August as part of This symposium was accompanied by three poster the IX International Mammalogical Congress (IMC9) in presentations. Dr. N. Sagara presented his new research Sapporo, Japan, 31 July–5 August 2005, and attracted topic, ‘Myco-talpology’, which is the science pertaining about 50 individuals interested in the family Talpidae to the ecological relationships between mushrooms and and other subterranean mammals. moles. Dr. Y. Yokohata communicated his and his After a brief introduction by Dr. Y. Yokohata, Dr. S. student’s research on lesser Japanese moles. The first Kawada highlighted his recent studies on the karyologi- poster examined the social relationships between indi- cal and morphological aspects of the lesser-known Asian vidual moles in captivity, while the second documented mole species, and forwarded several taxonomic prob- and compared the diet of an isolated insular population lems yet to be addressed. Dr. A. Loy followed this (Kinkasan Island) of moles inhabiting a ‘turf’ habitat presentation by discussing the origin and evolutionary altered by high populations of sika deer with those in history of Western European fossorial moles of the genus natural ‘forest’ environments. Talpa based on her and her collaborators’ studies of their In this proceeding, the following