Identification of Novel Molecular Targets of Resveratrol in Colorectal Carcinogenesis
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Microglia Emerge from Erythromyeloid Precursors Via Pu.1- and Irf8-Dependent Pathways
ART ic LE S Microglia emerge from erythromyeloid precursors via Pu.1- and Irf8-dependent pathways Katrin Kierdorf1,2, Daniel Erny1, Tobias Goldmann1, Victor Sander1, Christian Schulz3,4, Elisa Gomez Perdiguero3,4, Peter Wieghofer1,2, Annette Heinrich5, Pia Riemke6, Christoph Hölscher7,8, Dominik N Müller9, Bruno Luckow10, Thomas Brocker11, Katharina Debowski12, Günter Fritz1, Ghislain Opdenakker13, Andreas Diefenbach14, Knut Biber5,15, Mathias Heikenwalder16, Frederic Geissmann3,4, Frank Rosenbauer6 & Marco Prinz1,17 Microglia are crucial for immune responses in the brain. Although their origin from the yolk sac has been recognized for some time, their precise precursors and the transcription program that is used are not known. We found that mouse microglia were derived from primitive c-kit+ erythromyeloid precursors that were detected in the yolk sac as early as 8 d post conception. + lo − + − + These precursors developed into CD45 c-kit CX3CR1 immature (A1) cells and matured into CD45 c-kit CX3CR1 (A2) cells, as evidenced by the downregulation of CD31 and concomitant upregulation of F4/80 and macrophage colony stimulating factor receptor (MCSF-R). Proliferating A2 cells became microglia and invaded the developing brain using specific matrix metalloproteinases. Notably, microgliogenesis was not only dependent on the transcription factor Pu.1 (also known as Sfpi), but also required Irf8, which was vital for the development of the A2 population, whereas Myb, Id2, Batf3 and Klf4 were not required. Our data provide cellular and molecular insights into the origin and development of microglia. Microglia are the tissue macrophages of the brain and scavenge dying have the ability to give rise to microglia and macrophages in vitro cells, pathogens and molecules using pattern recognition receptors and in vivo under defined conditions. -
Ten Commandments for a Good Scientist
Unravelling the mechanism of differential biological responses induced by food-borne xeno- and phyto-estrogenic compounds Ana María Sotoca Covaleda Wageningen 2010 Thesis committee Thesis supervisors Prof. dr. ir. Ivonne M.C.M. Rietjens Professor of Toxicology Wageningen University Prof. dr. Albertinka J. Murk Personal chair at the sub-department of Toxicology Wageningen University Thesis co-supervisor Dr. ir. Jacques J.M. Vervoort Associate professor at the Laboratory of Biochemistry Wageningen University Other members Prof. dr. Michael R. Muller, Wageningen University Prof. dr. ir. Huub F.J. Savelkoul, Wageningen University Prof. dr. Everardus J. van Zoelen, Radboud University Nijmegen Dr. ir. Toine F.H. Bovee, RIKILT, Wageningen This research was conducted under the auspices of the Graduate School VLAG Unravelling the mechanism of differential biological responses induced by food-borne xeno- and phyto-estrogenic compounds Ana María Sotoca Covaleda Thesis submitted in fulfillment of the requirements for the degree of doctor at Wageningen University by the authority of the Rector Magnificus Prof. dr. M.J. Kropff, in the presence of the Thesis Committee appointed by the Academic Board to be defended in public on Tuesday 14 September 2010 at 4 p.m. in the Aula Unravelling the mechanism of differential biological responses induced by food-borne xeno- and phyto-estrogenic compounds. Ana María Sotoca Covaleda Thesis Wageningen University, Wageningen, The Netherlands, 2010, With references, and with summary in Dutch. ISBN: 978-90-8585-707-5 “Caminante no hay camino, se hace camino al andar. Al andar se hace camino, y al volver la vista atrás se ve la senda que nunca se ha de volver a pisar” - Antonio Machado – A mi madre. -
MRTF: Basic Biology and Role in Kidney Disease
International Journal of Molecular Sciences Review MRTF: Basic Biology and Role in Kidney Disease Maria Zena Miranda 1, Zsuzsanna Lichner 1, Katalin Szászi 1,2 and András Kapus 1,2,3,* 1 Keenan Research Centre for Biomedical Science of the St. Michael’s Hospital, Toronto, ON M5B 1W8, Canada; [email protected] (M.Z.M.); [email protected] (Z.L.); [email protected] (K.S.) 2 Department of Surgery, University of Toronto, Toronto, ON M5T 1P5, Canada 3 Department of Biochemistry, University of Toronto, Toronto, ON M5S 1A8, Canada * Correspondence: [email protected] Abstract: A lesser known but crucially important downstream effect of Rho family GTPases is the regulation of gene expression. This major role is mediated via the cytoskeleton, the organization of which dictates the nucleocytoplasmic shuttling of a set of transcription factors. Central among these is myocardin-related transcription factor (MRTF), which upon actin polymerization translocates to the nucleus and binds to its cognate partner, serum response factor (SRF). The MRTF/SRF complex then drives a large cohort of genes involved in cytoskeleton remodeling, contractility, extracellular matrix organization and many other processes. Accordingly, MRTF, activated by a variety of mechanical and chemical stimuli, affects a plethora of functions with physiological and pathological relevance. These include cell motility, development, metabolism and thus metastasis formation, inflammatory responses and—predominantly-organ fibrosis. The aim of this review is twofold: to provide an up- to-date summary about the basic biology and regulation of this versatile transcriptional coactivator; and to highlight its principal involvement in the pathobiology of kidney disease. -
A Dual Cis-Regulatory Code Links IRF8 to Constitutive and Inducible Gene Expression in Macrophages
Downloaded from genesdev.cshlp.org on October 1, 2021 - Published by Cold Spring Harbor Laboratory Press A dual cis-regulatory code links IRF8 to constitutive and inducible gene expression in macrophages Alessandra Mancino,1,3 Alberto Termanini,1,3 Iros Barozzi,1 Serena Ghisletti,1 Renato Ostuni,1 Elena Prosperini,1 Keiko Ozato,2 and Gioacchino Natoli1 1Department of Experimental Oncology, European Institute of Oncology (IEO), 20139 Milan, Italy; 2Laboratory of Molecular Growth Regulation, Genomics of Differentiation Program, National Institute of Child Health and Human Development (NICHD), National Institutes of Health, Bethesda, Maryland 20892, USA The transcription factor (TF) interferon regulatory factor 8 (IRF8) controls both developmental and inflammatory stimulus-inducible genes in macrophages, but the mechanisms underlying these two different functions are largely unknown. One possibility is that these different roles are linked to the ability of IRF8 to bind alternative DNA sequences. We found that IRF8 is recruited to distinct sets of DNA consensus sequences before and after lipopolysaccharide (LPS) stimulation. In resting cells, IRF8 was mainly bound to composite sites together with the master regulator of myeloid development PU.1. Basal IRF8–PU.1 binding maintained the expression of a broad panel of genes essential for macrophage functions (such as microbial recognition and response to purines) and contributed to basal expression of many LPS-inducible genes. After LPS stimulation, increased expression of IRF8, other IRFs, and AP-1 family TFs enabled IRF8 binding to thousands of additional regions containing low-affinity multimerized IRF sites and composite IRF–AP-1 sites, which were not premarked by PU.1 and did not contribute to the basal IRF8 cistrome. -
Molecular Pathogenesis and Regulation of the Mir-29-3P-Family: Involvement of ITGA6 and ITGB1 in Intra-Hepatic Cholangiocarcinoma
cancers Article Molecular Pathogenesis and Regulation of the miR-29-3p-Family: Involvement of ITGA6 and ITGB1 in Intra-Hepatic Cholangiocarcinoma Yuto Hozaka 1 , Naohiko Seki 2,* , Takako Tanaka 1, Shunichi Asai 2, Shogo Moriya 3, Tetsuya Idichi 1, Masumi Wada 1, Kiyonori Tanoue 1, Yota Kawasaki 1, Yuko Mataki 1 , Hiroshi Kurahara 1 and Takao Ohtsuka 1 1 Department of Digestive Surgery, Breast and Thyroid Surgery, Graduate School of Medical and Dental Sciences, Kagoshima University, Kagoshima 890-8520, Japan; [email protected] (Y.H.); [email protected] (T.T.); [email protected] (T.I.); [email protected] (M.W.); [email protected] (K.T.); [email protected] (Y.K.); [email protected] (Y.M.); [email protected] (H.K.); [email protected] (T.O.) 2 Department of Functional Genomics, Graduate School of Medicine, Chiba University, Chiba 260-8670, Japan; [email protected] 3 Department of Biochemistry and Genetics, Graduate School of Medicine, Chiba University, Chiba 260-8670, Japan; [email protected] * Correspondence: [email protected]; Tel.: +81-43-226-2971 Simple Summary: Even today, there are no effective targeted therapies for intrahepatic cholan- giocarcinoma (ICC) patients. Clarifying the molecular pathogenesis of ICC will contribute to the Citation: Hozaka, Y.; Seki, N.; development of treatment strategies for this disease. In this study, we searched for the role of the Tanaka, T.; Asai, S.; Moriya, S.; Idichi, miR-29-3p-family and its association with oncogenic pathway. Interestingly, aberrant expression of T.; Wada, M.; Tanoue, K.; Kawasaki, ITGA6 and ITGB1 was directly regulated by the miR-29-3p-family which are involved in multiple Y.; Mataki, Y.; et al. -
Genequery™ Human Stem Cell Transcription Factors Qpcr Array
GeneQuery™ Human Stem Cell Transcription Factors qPCR Array Kit (GQH-SCT) Catalog #GK125 Product Description ScienCell's GeneQuery™ Human Stem Cell Transcription Factors qPCR Array Kit (GQH-SCT) surveys a panel of 88 transcription factors related to stem cell maintenance and differentiation. Transcription factors are proteins that can regulate target gene transcription level by binding to specific regions of the genome known as enhancers or silencers. Brief examples of how genes may be grouped according to their functions are shown below: • Pluripotency transcription factors: NANOG, POU5F1, SOX2 • Embryonic development: EOMES, FOXC2/D3/O1, HOXA9/A10, KLF2/5, LIN28B, MAX, PITX2, SMAD1, TBX5, ZIC1 • Germ layer formation and differentiation: FOXA2, GATA6, HAND1, ISL1, KLF4, SMAD2, SOX9 • Organ morphogenesis: EZH2, HOXA11/B3/B5/C9, MSX2, MYC, PAX5/8, VDR • Angiogenesis: CDX2, JUN, NR2F2, RUNX1, WT1 • Hematopoiesis and osteogenesis: EGR3, ESR1, GATA1/2/3, GLI2, NFATC1, PAX9, RB1, SOX6, SP1, STAT1 • Neural stem cell maintenance and differentiation: ATF2, CREB1, FOSB, FOXO3, HES1, HOXD10, MCM2/7, MEF2C, NEUROD1/G1, OLIG1/2, PAX3/6, POU4F1, PPARG, SMAD3/4, SNAI1, STAT3 Note : all gene names follow their official symbols by the Human Genome Organization Gene Nomenclature Committee (HGNC). GeneQuery™ qPCR array kits are qPCR ready in a 96-well plate format, with each well containing one primer set that can specifically recognize and efficiently amplify a target gene's cDNA. The carefully designed primers ensure that: (i) the optimal annealing temperature in qPCR analysis is 65°C (with 2 mM Mg 2+ , and no DMSO); (ii) the primer set recognizes all known transcript variants of target gene, unless otherwise indicated; and (iii) only one gene is amplified. -
Cardiac SARS‐Cov‐2 Infection Is Associated with Distinct Tran‐ Scriptomic Changes Within the Heart
Cardiac SARS‐CoV‐2 infection is associated with distinct tran‐ scriptomic changes within the heart Diana Lindner, PhD*1,2, Hanna Bräuninger, MS*1,2, Bastian Stoffers, MS1,2, Antonia Fitzek, MD3, Kira Meißner3, Ganna Aleshcheva, PhD4, Michaela Schweizer, PhD5, Jessica Weimann, MS1, Björn Rotter, PhD9, Svenja Warnke, BSc1, Carolin Edler, MD3, Fabian Braun, MD8, Kevin Roedl, MD10, Katharina Scher‐ schel, PhD1,12,13, Felicitas Escher, MD4,6,7, Stefan Kluge, MD10, Tobias B. Huber, MD8, Benjamin Ondruschka, MD3, Heinz‐Peter‐Schultheiss, MD4, Paulus Kirchhof, MD1,2,11, Stefan Blankenberg, MD1,2, Klaus Püschel, MD3, Dirk Westermann, MD1,2 1 Department of Cardiology, University Heart and Vascular Center Hamburg, Germany. 2 DZHK (German Center for Cardiovascular Research), partner site Hamburg/Kiel/Lübeck. 3 Institute of Legal Medicine, University Medical Center Hamburg‐Eppendorf, Germany. 4 Institute for Cardiac Diagnostics and Therapy, Berlin, Germany. 5 Department of Electron Microscopy, Center for Molecular Neurobiology, University Medical Center Hamburg‐Eppendorf, Germany. 6 Department of Cardiology, Charité‐Universitaetsmedizin, Berlin, Germany. 7 DZHK (German Centre for Cardiovascular Research), partner site Berlin, Germany. 8 III. Department of Medicine, University Medical Center Hamburg‐Eppendorf, Germany. 9 GenXPro GmbH, Frankfurter Innovationszentrum, Biotechnologie (FIZ), Frankfurt am Main, Germany. 10 Department of Intensive Care Medicine, University Medical Center Hamburg‐Eppendorf, Germany. 11 Institute of Cardiovascular Sciences, -
Focal Adhesion Kinase Interacts with the Transcriptional Coactivator FHL2 and Both Are Overexpressed in Epithelial Ovarian Cancer
ANTICANCER RESEARCH 24: 921-928 (2004) Focal Adhesion Kinase Interacts with the Transcriptional Coactivator FHL2 and Both are Overexpressed in Epithelial Ovarian Cancer BORIS GABRIEL, STEPHAN MILDENBERGER, CHRISTIAN W. WEISSER, ERIC METZGER, GERALD GITSCH, ROLAND SCHÜLE and JUDITH M. MÜLLER Universitäts-Frauenklinik, Klinikum der Universität Freiburg, Freiburg, Germany Abstract. Abnormal signal transduction arising from integrins and The Four and a Half LIM domain (FHL) proteins are formed protein tyrosine kinases has been implicated in the initiation and by the five members FHL1, 2, 3, 4 and ACT and belong to the progression of a variety of human cancers. Integrin-mediated signal LIM-only protein subclass (4). transduction pathways require regulated cytoplasmic protein-protein FHL2 interacts with transcription factors such as the interactions. However, little is known about integrin-associated proteins androgen receptor, CREB/CREM, PLZF, AP-1, as well as and ovarian cancer. In our study we investigated the association of various other proteins, e.g. hCDC47 and presenilin 2 (5-10). pp125FAK, a cytoplasmic tyrosine kinase, involved in anchorage- FHL2 exhibits a tissue-restricted expression pattern with independent growth of tumor cells, and the Four and a Half LIM domain prominent expression in heart and prostate epithelial cells (5) (FHL) protein FHL2, which was recently shown to interact with integrins. and its subcellular localization can be both nuclear and non- Our data demonstrated that pp125FAK and FHL2 form a protein nuclear. Stimulation of the Rho signalling pathway induces complex in human ovarian carcinoma. Furthermore, we showed that translocation of FHL2 from the cell membrane into the nucleus pp125FAK is overexpressed in epithelial ovarian cancer, but virtually and subsequent activation of FHL2- and AR- dependent genes absent in normal ovary. -
Krüppel-Like Factor 4 Promotes Survival and Expansion in Acute Myeloid Leukemia Cells
www.oncotarget.com Oncotarget, 2021, Vol. 12, (No. 4), pp: 255-267 Research Paper Krüppel-like factor 4 promotes survival and expansion in acute myeloid leukemia cells Andrew Henry Lewis1, Cory Seth Bridges1, Viraaj Singh Punia1, Abraham Fausto Jornada Cooper1,2, Monica Puppi1 and H. Daniel Lacorazza1 1Department of Pathology & Immunology, Baylor College of Medicine, Texas Children’s Hospital, Houston, TX 77030, USA 2SMART Program at Baylor College of Medicine Houston, Houston, TX 77030, USA Correspondence to: H. Daniel Lacorazza, email: [email protected] Keywords: acute myeloid leukemia; KLF4; cancer; gene editing; cell growth Received: November 20, 2020 Accepted: January 19, 2021 Published: February 16, 2021 Copyright: © 2021 Lewis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. ABSTRACT Acute myeloid leukemia (AML) is an aggressive hematological malignancy of the bone marrow that affects mostly elderly adults. Alternative therapies are needed for AML patients because the overall prognosis with current standard of care, high dose chemotherapy and allogeneic transplantation, remains poor due to the emergence of refractory and relapsed disease. Here, we found expression of the transcription factor KLF4 in AML cell lines is not silenced through KLF4 gene methylation nor via proteasomal degradation. The deletion of KLF4 by CRISPR-CAS9 technology reduced cell growth and increased apoptosis in both NB4 and MonoMac-6 cell lines. Chemical induced differentiation of gene edited NB4 and MonoMac6 cells with ATRA and PMA respectively increased apoptosis and altered expression of differentiating markers CD11b and CD14. -
Estrogen Receptor Α Promotes Breast Cancer by Reprogramming Choline Metabolism
Published OnlineFirst July 25, 2016; DOI: 10.1158/0008-5472.CAN-15-2910 Cancer Integrated Systems and Technologies Research Estrogen Receptor a Promotes Breast Cancer by Reprogramming Choline Metabolism Min Jia1, Trygve Andreassen2, Lasse Jensen3,4, Tone Frost Bathen5, Indranil Sinha1, Hui Gao1, Chunyan Zhao1, Lars-Arne Haldosen1, Yihai Cao3, Leonard Girnita6, Siver Andreas Moestue5, and Karin Dahlman-Wright1 Abstract Estrogen receptor a (ERa) is a key regulator of breast growth and identified as a direct ERa-regulated gene, was required for estro- breast cancer development. Here, we report how ERa impacts gen-induced effects on Cho metabolism, including increased these processes by reprogramming metabolism in malignant phosphatidylcholine synthesis. CHPT1 silencing inhibited anchor- breast cells. We employed an integrated approach, combining age-independent growth and cell proliferation, also suppressing genome-wide mapping of chromatin-bound ERa with estrogen- early-stage metastasis of tamoxifen-resistant breast cancer cells induced transcript and metabolic profiling, to demonstrate that in a zebrafish xenograft model. Our results showed that ERa pro- ERa reprograms metabolism upon estrogen stimulation, including motes metabolic alterations in breast cancer cells mediated by changes in aerobic glycolysis, nucleotide and amino acid synthesis, its target CHPT1, which this study implicates as a candidate thera- and choline (Cho) metabolism. Cho phosphotransferase CHPT1, peutic target. Cancer Res; 76(19); 1–13. Ó2016 AACR. Introduction lated to hormone receptor status, including differences in gluta- mine and b-alanine metabolism, as well as phospholipid metab- Complementary to viewing cancer as a genetic disease, cancer olism (9–11). Furthermore, estrogen stimulation enhanced the can be considered a metabolic disease (1, 2). -
ERG Promotes Transcriptional Reprogramming of Prostatic Epithelial Cells Toward a Cancer Stem Cell Phenotype
ERG promotes transcriptional reprogramming of prostatic epithelial cells toward a cancer stem cell phenotype Manju Sharma, Yubin Guo, Robert Bell, and Michael E. Cox. Vancouver Prostate Centre. Vancouver British Columbia, Canada Abstract Genomic rearrangements that result in aberrant expression of the proto-oncogene member of the erythroblast transformation-specific family of transcription factors, ERG, occur in almost half of prostate cancers. The most frequent rearrangements are the result of an interstitial deletion that results in fusion of androgen-responsive elements of serine 2-erythroblast transformation-specific-related gene with variable amino terminal ERG open reading frame exons. These TMPRSS2-ERG fusions are the most common cancer-associated mutation. They occur early in prostate cancer initiation, are associated with high Gleason score, and aggressive disease. When amplified and/or expressed at high level, TMPRSS2-ERG is associated with poor prognosis. Mirroring its functions in normal chondrocyte and endothelial cell differentiation, ERG expression in prostatic epithelial cells drives aberrant activation of transcriptional programs promoting migration, invasion, and epithelial-mesenchymal transition. Additionally, TMPRSS2-ERG status appears to enhance resistance to abiraterone and taxane therapies. We hypothesized that ERG expression can promote transformation of prostatic epithelial cells by directing transcriptional reprogramming towards a cancer stem cell phenotype. Transcriptional analysis of ERG-expressing RWPE1 prostatic epithelial cells (ERG-RWPE1) demonstrated up-regulation transcription of a panel of stem cell-related genes. When cultured under non- adherent conditions, ERG-RWPE1 cells selectively demonstrated the ability of form serially passable spheroids and dramatically increased expression of stem cell markers, PROM1, c-KIT and CD33. When re- plated in adherent conditions, cells re-established the expression pattern of parental adherent cultures. -
Matrix Mechanics Controls FHL2 Movement to the Nucleus to Activate
Matrix mechanics controls FHL2 movement to the PNAS PLUS nucleus to activate p21 expression Naotaka Nakazawaa, Aneesh R. Sathea, G. V. Shivashankara,b,c, and Michael P. Sheetza,b,d,1 aMechanobiology Institute, National University of Singapore, Singapore 117411; bDepartment of Biological Sciences, National University of Singapore, Singapore 117543; cInstitute of Molecular Oncology, Italian Foundation for Cancer Research, Milan 20139, Italy; and dDepartment of Biological Sciences, Columbia University, New York, NY 10027 Edited by David A. Weitz, Harvard University, Cambridge, MA, and approved August 29, 2016 (received for review May 23, 2016) Substrate rigidity affects many physiological processes through a mechanosensitive transcriptional factor, to the nucleus through mechanochemical signals from focal adhesion (FA) complexes that Lamin A/C (19). The mechanism by which the signal is trans- subsequently modulate gene expression. We find that shuttling of mitted from an adhesion on a rigid or soft matrix to the nucleus to the LIM domain (domain discovered in the proteins, Lin11, Isl-1, alter gene expression remains largely unknown, however. Both and Mec-3) protein four-and-a-half LIM domains 2 (FHL2) between direct mechanical transduction through cytoskeleton–nuclear links FAs and the nucleus depends on matrix mechanics. In particular, on and chemical signals have been postulated as the critical signals in soft surfaces or after the loss of force, FHL2 moves from FAs into mechanotransduction (20, 21). the nucleus and concentrates at RNA polymerase (Pol) II sites, LIM domain (domain discovered in the proteins, Lin11, Isl-1, where it acts as a transcriptional cofactor, causing an increase in and Mec-3) proteins have been implicated as potential mecha- p21 gene expression that will inhibit growth on soft surfaces.