Evidence of a Divergent Growth Response in the Pacific Oyster
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Sandbridge Beach FONSI
FINDING OF NO SIGNIFICANT IMPACT Issuance of a Negotiated Agreement for Use of Outer Continental Shelf Sand from Sandbridge Shoal in the Sandbridge Beach Erosion Control and Hurricane Protection Project Virginia Beach, Virginia Pursuant to the National Environmental Policy Act (NEPA), Council on Environmental Quality regulations implementing NEPA (40 CFR 1500-1508) and Department of the Interior (DOI) regulations implementing NEPA (43 CFR 46), the Bureau of Ocean Energy Management (BOEM) prepared an environmental assessment (EA) to determine whether the issuance of a negotiated agreement for the use of Outer Continental Shelf (OCS) sand from Sandbridge Shoal Borrow Areas A and B for the Sandbridge Beach Erosion Control and Hurricane Protection Project near Virginia Beach, VA would have a significant effect on the human environment and whether an environmental impact statement (EIS) should be prepared. Several NEPA documents evaluating impacts of the project have been previously prepared by both the US Army Corps of Engineers (USACE) and BOEM. The USACE described the affected environment, evaluated potential environmental impacts (initial construction and nourishment events), and considered alternatives to the proposed action in a 2009 EA. This EA was subsequently updated and adopted by BOEM in 2012 in association with the most recent 2013 Sandbridge nourishment effort (BOEM 2012). Prior to this, BOEM (previously Minerals Management Service [MMS]) was a cooperating agency on several EAs for previous projects (MMS 1997; MMS 2001; MMS 2006). This current EA, prepared by BOEM, supplements and summarizes the aforementioned 2012 analysis. BOEM has reviewed all prior analyses, supplemented additional information as needed, and determined that the potential impacts of the current proposed action have been adequately addressed. -
The Sense of Hearing in the Pacific Oyster, Magallana Gigas
RESEARCH ARTICLE The sense of hearing in the Pacific oyster, Magallana gigas Mohcine Charifi1,2,3, Mohamedou Sow1,2, Pierre Ciret1,2, Soumaya Benomar3, Jean- Charles Massabuau1,2* 1 University of Bordeaux, EPOC, UMR 5805, Arcachon, France, 2 CNRS, EPOC, UMR 5805, Talence, France, 3 Unit of Research on Biological Rhythms, Neuroscience and Environment, Faculty of Science, Mohammed V-Agdal University, Rabat, Morocco * [email protected] a1111111111 a1111111111 a1111111111 a1111111111 Abstract a1111111111 There is an increasing concern that anthropogenic noise could have a significant impact on the marine environment, but there is still insufficient data for most invertebrates. What do they perceive? We investigated this question in oysters Magallana gigas (Crassostrea gigas) using pure tone exposures, accelerometer fixed on the oyster shell and hydrophone in the OPEN ACCESS water column. Groups of 16 oysters were exposed to quantifiable waterborne sinusoidal Citation: Charifi M, Sow M, Ciret P, Benomar S, sounds in the range of 10 Hz to 20 kHz at various acoustic energies. The experiment was con- Massabuau J-C (2017) The sense of hearing in the ducted in running seawater using an experimental flume equipped with suspended loud- Pacific oyster, Magallana gigas. PLoS ONE 12(10): e0185353. https://doi.org/10.1371/journal. speakers. The sensitivity of the oysters was measured by recording their valve movements pone.0185353 by high-frequency noninvasive valvometry. The tests were 3 min tone exposures including a Editor: Jose A. FernaÂndez Robledo, Bigelow 70 sec fade-in period. Three endpoints were analysed: the ratio of responding individuals in Laboratory for Ocean Sciences, UNITED STATES the group, the resulting changes of valve opening amplitude and the response latency. -
Biodiversity Risk and Benefit Assessment for Pacific Oyster (Crassostrea Gigas) in South Africa
Biodiversity Risk and Benefit Assessment for Pacific oyster (Crassostrea gigas) in South Africa Prepared in Accordance with Section 14 of the Alien and Invasive Species Regulations, 2014 (Government Notice R 598 of 01 August 2014), promulgated in terms of the National Environmental Management: Biodiversity Act (Act No. 10 of 2004). September 2019 Biodiversity Risk and Benefit Assessment for Pacific oyster (Crassostrea gigas) in South Africa Document Title Biodiversity Risk and Benefit Assessment for Pacific oyster (Crassostrea gigas) in South Africa. Edition Date September 2019 Prepared For Directorate: Sustainable Aquaculture Management Department of Environment, Forestry and Fisheries Private Bag X2 Roggebaai, 8001 www.daff.gov.za/daffweb3/Branches/Fisheries- Management/Aquaculture-and-Economic- Development Originally Prepared By Dr B. Clark (2012) Anchor Environmental Consultants Reviewed, Updated and Mr. E. Hinrichsen Recompiled By AquaEco as commisioned by Enterprises at (2019) University of Pretoria 1 | P a g e Biodiversity Risk and Benefit Assessment for Pacific oyster (Crassostrea gigas) in South Africa CONTENT 1. INTRODUCTION .............................................................................................................................. 9 2. PURPOSE OF THIS RISK ASSESSMENT ..................................................................................... 9 3. THE RISK ASSESSMENT PRACTITIONER ................................................................................. 10 4. NATURE OF THE USE OF PACIFIC OYSTER -
Diversity and Life-Cycle Analysis of Pacific Ocean Zooplankton by Video Microscopy and DNA Barcoding: Crustacea
Journal of Aquaculture & Marine Biology Research Article Open Access Diversity and life-cycle analysis of Pacific Ocean zooplankton by video microscopy and DNA barcoding: Crustacea Abstract Volume 10 Issue 3 - 2021 Determining the DNA sequencing of a small element in the mitochondrial DNA (DNA Peter Bryant,1 Timothy Arehart2 barcoding) makes it possible to easily identify individuals of different larval stages of 1Department of Developmental and Cell Biology, University of marine crustaceans without the need for laboratory rearing. It can also be used to construct California, USA taxonomic trees, although it is not yet clear to what extent this barcode-based taxonomy 2Crystal Cove Conservancy, Newport Coast, CA, USA reflects more traditional morphological or molecular taxonomy. Collections of zooplankton were made using conventional plankton nets in Newport Bay and the Pacific Ocean near Correspondence: Peter Bryant, Department of Newport Beach, California (Lat. 33.628342, Long. -117.927933) between May 2013 and Developmental and Cell Biology, University of California, USA, January 2020, and individual crustacean specimens were documented by video microscopy. Email Adult crustaceans were collected from solid substrates in the same areas. Specimens were preserved in ethanol and sent to the Canadian Centre for DNA Barcoding at the Received: June 03, 2021 | Published: July 26, 2021 University of Guelph, Ontario, Canada for sequencing of the COI DNA barcode. From 1042 specimens, 544 COI sequences were obtained falling into 199 Barcode Identification Numbers (BINs), of which 76 correspond to recognized species. For 15 species of decapods (Loxorhynchus grandis, Pelia tumida, Pugettia dalli, Metacarcinus anthonyi, Metacarcinus gracilis, Pachygrapsus crassipes, Pleuroncodes planipes, Lophopanopeus sp., Pinnixa franciscana, Pinnixa tubicola, Pagurus longicarpus, Petrolisthes cabrilloi, Portunus xantusii, Hemigrapsus oregonensis, Heptacarpus brevirostris), DNA barcoding allowed the matching of different life-cycle stages (zoea, megalops, adult). -
Native Decapoda
NATIVE DECAPODA Dungeness crab - Metacarcinus magister DESCRIPTION This crab has white-tipped pinchers on the claws, and the top edges and upper pincers are sawtoothed with dozens of teeth along each edge. The last three joints of the last pair of walking legs have a comb-like fringe of hair on the lower edge. Also the tip of the last segment of the tail flap is rounded as compared to the pointed last segment of many other crabs. RANGE Alaska's Aleutian Islands south to Pt Conception in California SIZE Carapace width to 25 cm (9 inches), but typically less than 20 cm STATUS Native; see the full record at http://www.dfg.ca.gov/marine/dungeness_crab.asp COLOR Light reddish brown on the back, with a purplish wash anteriorly in some specimens. Underside whitish to light orange. HABITAT Rock, sand and eelgrass TIDAL HEIGHT Subtidal to offshore SALINITY Normal range 10–32ppt; 15ppt optimum for hatching TEMPERATURE Normally found from 3–19°C SIMILAR SPECIES Unlike the green crab, it has 10 spines on either side of the eye sockets and grows much larger. It can be distinguished from Metacarcinus gracilis which also has white claws, by the carapace being widest at the 10th tooth vs the 9th in M. gracilis . Unlike the red rock crab it has a tooth on the dorsal margin of its white tipped claw (this and other similar Cancer crabs have black tipped claws). ©Aaron Baldwin © bioweb.uwlax.edu red rock crab - note black tipped claws Plate Watch Monitoring Program . -
Open Ocean Intake Effects Study
City of Santa Cruz Water Department & Soquel Creek Water District scwd2 Desalination Program Open Ocean Intake Effects Study December 2010 Submitted to: Ms. Heidi Luckenbach City of Santa Cruz 212 Locust Street Santa Cruz, CA 95060 Prepared by: Environmental ESLO2010-017.1 [Blank Page] ACKNOWLEDGEMENTS Tenera Environmental wishes to acknowledge the valuable contributions of the Santa Cruz Water Department, Soquel Creek Water District, and scwd² Task Force in conducting the Open Ocean Intake Effects Study. Specifically, Tenera would like to acknowledge the efforts of: City of Santa Cruz Water Department Soquel Creek Water District Bill Kocher, Director Laura Brown, General Manager Linette Almond, Engineering Manager Melanie Mow Schumacher, Public Information Heidi R. Luckenbach, Program Coordinator Coordinator Leah Van Der Maaten, Associate Engineer Catherine Borrowman, Professional and Technical scwd² Task Force Assistant Ryan Coonerty Todd Reynolds, Kennedy/Jenks and scwd² Bruce Daniels Technical Advisor Bruce Jaffe Dan Kriege Thomas LaHue Don Lane Cynthia Mathews Mike Rotkin Ed Porter Tenera’s project team included the following members: David L. Mayer, Ph.D., Tenera Environmental President and Principal Scientist John Steinbeck, Tenera Environmental Vice President and Principal Scientist Carol Raifsnider, Tenera Environmental Director of Operations and Principal Scientist Technical review and advice was provided by: Pete Raimondi, Ph.D., UCSC, Professor of Ecology and Evolutionary Biology in the Earth and Marine Sciences Dept. Gregor -
Harbor Seal Species Profile Encyclopedia of Puget Sound June 9, 2014
(Photograph by G. E. Davis) Harbor seal species profile Encyclopedia of Puget Sound June 9, 2014 Jacqlynn C. Zier and Joseph K. Gaydos* SeaDoc Society / UC Davis’ Karen C. Drayer Wildlife Health Center Orcas Island Office 942 Deer Harbor Road, Eastsound, WA 98245 *Corresponding author [email protected] Table of Contents Introduction ............................................................................................................. 3 Distribution .............................................................................................................. 3 Global .............................................................................................................................................................................. 3 Local ................................................................................................................................................................................ 3 1 Populations .............................................................................................................. 4 Genetic diversity ........................................................................................................................................................ 4 Population size ........................................................................................................................................................... 5 Longevity and survival .......................................................................................................................................... -
1 Metagenetic Analysis of 2018 and 2019 Plankton Samples from Prince
Metagenetic Analysis of 2018 and 2019 Plankton Samples from Prince William Sound, Alaska. Report to Prince William Sound Regional Citizens’ Advisory Council (PWSRCAC) From Molecular Ecology Laboratory Moss Landing Marine Laboratory Dr. Jonathan Geller Melinda Wheelock Martin Guo Any opinions expressed in this PWSRCAC-commissioned report are not necessarily those of PWSRCAC. April 13, 2020 ABSTRACT This report describes the methods and findings of the metagenetic analysis of plankton samples from the waters of Prince William Sound (PWS), Alaska, taken in May of 2018 and 2019. The study was done to identify zooplankton, in particular the larvae of benthic non-indigenous species (NIS). Plankton samples, collected by the Prince William Sound Science Center (PWSSC), were analyzed by the Molecular Ecology Laboratory at the Moss Landing Marine Laboratories. The samples were taken from five stations in Port Valdez and nearby in PWS. DNA was extracted from bulk plankton and a portion of the mitochondrial Cytochrome c oxidase subunit 1 gene (the most commonly used DNA barcode for animals) was amplified by polymerase chain reaction (PCR). Products of PCR were sequenced using Illumina reagents and MiSeq instrument. In 2018, 257 operational taxonomic units (OTU; an approximation of biological species) were found and 60 were identified to species. In 2019, 523 OTU were found and 126 were identified to species. Most OTU had no reference sequence and therefore could not be identified. Most identified species were crustaceans and mollusks, and none were non-native. Certain species typical of fouling communities, such as Porifera (sponges) and Bryozoa (moss animals) were scarce. Larvae of many species in these phyla are poorly dispersing, such that they will be found in abundance only in close proximity to adult populations. -
Methodology of the Pacific Marine Ecological Classification System and Its Application to the Northern and Southern Shelf Bioregions
Canadian Science Advisory Secretariat (CSAS) Research Document 2016/035 Pacific Region Methodology of the Pacific Marine Ecological Classification System and its Application to the Northern and Southern Shelf Bioregions Emily Rubidge1, Katie S. P. Gale1, Janelle M. R. Curtis2, Erin McClelland3, Laura Feyrer4, Karin Bodtker5, Carrie Robb5 1Institute of Ocean Sciences Fisheries & Oceans Canada P.O. Box 6000 Sidney, BC V8L 4B2 2Pacific Biological Station Fisheries & Oceans Canada 3190 Hammond Bay Rd Nanaimo, BC V9T 1K6 3EKM Scientific Consulting 4BC Ministry of Environment P.O. Box 9335 STN PROV GOVT Victoria, BC V8W 9M1 5Living Oceans Society 204-343 Railway St. Vancouver, BC V6A 1A4 May 2016 Foreword This series documents the scientific basis for the evaluation of aquatic resources and ecosystems in Canada. As such, it addresses the issues of the day in the time frames required and the documents it contains are not intended as definitive statements on the subjects addressed but rather as progress reports on ongoing investigations. Research documents are produced in the official language in which they are provided to the Secretariat. Published by: Fisheries and Oceans Canada Canadian Science Advisory Secretariat 200 Kent Street Ottawa ON K1A 0E6 http://www.dfo-mpo.gc.ca/csas-sccs/ [email protected] © Her Majesty the Queen in Right of Canada, 2016 ISSN 1919-5044 Correct citation for this publication: Rubidge, E., Gale, K.S.P., Curtis, J.M.R., McClelland, E., Feyrer, L., Bodtker, K., and Robb, C. 2016. Methodology of the Pacific Marine Ecological Classification System and its Application to the Northern and Southern Shelf Bioregions. -
Non-Collinear Hox Gene Expression in Bivalves and the Evolution
www.nature.com/scientificreports OPEN Non‑collinear Hox gene expression in bivalves and the evolution of morphological novelties in mollusks David A. Salamanca‑Díaz1, Andrew D. Calcino1, André L. de Oliveira2 & Andreas Wanninger 1* Hox genes are key developmental regulators that are involved in establishing morphological features during animal ontogeny. They are commonly expressed along the anterior–posterior axis in a staggered, or collinear, fashion. In mollusks, the repertoire of body plans is widely diverse and current data suggest their involvement during development of landmark morphological traits in Conchifera, one of the two major lineages that comprises those taxa that originated from a uni‑shelled ancestor (Monoplacophora, Gastropoda, Cephalopoda, Scaphopoda, Bivalvia). For most clades, and bivalves in particular, data on Hox gene expression throughout ontogeny are scarce. We thus investigated Hox expression during development of the quagga mussel, Dreissena rostriformis, to elucidate to which degree they might contribute to specifc phenotypic traits as in other conchiferans. The Hox/ParaHox complement of Mollusca typically comprises 14 genes, 13 of which are present in bivalve genomes including Dreissena. We describe here expression of 9 Hox genes and the ParaHox gene Xlox during Dreissena development. Hox expression in Dreissena is frst detected in the gastrula stage with widely overlapping expression domains of most genes. In the trochophore stage, Hox gene expression shifts towards more compact, largely mesodermal domains. Only few of these domains can be assigned to specifc developing morphological structures such as Hox1 in the shell feld and Xlox in the hindgut. We did not fnd traces of spatial or temporal staggered expression of Hox genes in Dreissena. -
The Published Mitogenome of Alectryonella Plicatula (Ostreinae)
bioRxiv preprint doi: https://doi.org/10.1101/2021.06.19.449104; this version posted June 20, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Yet another mitochondrial genome of the Pacific cupped oyster: the published 2 mitogenome of Alectryonella plicatula (Ostreinae) is based on a misidentified 3 Magallana gigas (Crassostreinae) 4 Daniele Salvi1, @, Emanuele Berrilli1, Matteo Garzia1, Paolo Mariottini2 5 6 1 Department of Health, Life and Environmental Sciences, University of L’Aquila, Via Vetoio, 67100 Coppito, 7 L’Aquila, Italy. 8 2 Dipartimento di Scienze, Università Roma Tre, Viale G. Marconi 446, 00146 Rome, Italy 9 10 @: Corresponding author: Daniele Salvi, [email protected] 11 12 13 Abstract 14 The recently published mitochondrial genome of the fingerprint oyster Alectryonella plicatula 15 (Gmelin, 1791) with GenBank accession number MW143047 was resolved in an unexpected 16 phylogenetic position, as sister to the Pacific cupped oyster Magallana gigas (Thunberg, 1793) and 17 share with this species three typical gene duplications that represent robust synapomorphies of the 18 Magallana clade. In this study, we verified the identity of MW143047 using direct comparisons of 19 single gene sequences, DNA barcoding and phylogenetic analyses. BLAST searches using each of 20 the 12 protein coding genes and rRNA genes extracted from MW143047 as query retrieved M. 21 gigas as best hit with 100% sequence identity. MW143047 is nested within the clade formed by M. 22 gigas sequences, with virtually no difference between their terminal branch lengths, both in the 23 cox1 gene tree (based on 3639 sequences) and in the 16S gene tree (based on 1839 sequences), as 24 well as in the Maximum Likelihood mitogenomic tree based on concatenated sequence of 12 PCGs. -
Redirect Notice
UC San Diego Research Theses and Dissertations Title The population dynamics of mitten crab larvae in the San Francisco Bay Permalink https://escholarship.org/uc/item/01g8c0ck Author Gonzales, Vanessa Alexandra Publication Date 2010-10-01 eScholarship.org Powered by the California Digital Library University of California ABSTRACT THE POPULATION DYNAMICS OF MITTEN CRAB LARVAE IN THE SAN FRANCISCO BAY The Chinese mitten crab, Eriocheir sinensis, has a history of invasions in numerous countries. In 1992, the Chinese mitten crab was introduced to the San Francisco Bay/Delta system. Since its invasion in the San Francisco Bay, it has become an aquatic nuisance species. Little is known about the population dynamics of the megalopa stage of the Chinese mitten crab in the San Francisco Bay estuary, particularly the megalopa stage. Light traps are often used to sample marine larvae and can provide measures for relative abundance of larvae between sampling locations. As part of an ongoing study to monitor mitten crab larvae in the San Francisco Bay, light trap and plankton tow samples were analyzed for mitten crab megalopae and zoeae. In order to implement low cost sampling devices for mitten crab megalopae such as light traps, it is necessary to be able to identify their larvae in collected samples. Thus, the main objective of this work was to develop a means to distinguish mitten crab megalopae from other native and invasive brachyuran megalopae inhabiting the San Francisco Bay Estuary. The minimal amount of mitten crab megalopae found in light trap samples may be linked to the recent decline of mitten crab zoeae in San Pablo Bay.