Ecological Trade-Offs Related to Basidiospore Size
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Appendix K. Survey and Manage Species Persistence Evaluation
Appendix K. Survey and Manage Species Persistence Evaluation Establishment of the 95-foot wide construction corridor and TEWAs would likely remove individuals of H. caeruleus and modify microclimate conditions around individuals that are not removed. The removal of forests and host trees and disturbance to soil could negatively affect H. caeruleus in adjacent areas by removing its habitat, disturbing the roots of host trees, and affecting its mycorrhizal association with the trees, potentially affecting site persistence. Restored portions of the corridor and TEWAs would be dominated by early seral vegetation for approximately 30 years, which would result in long-term changes to habitat conditions. A 30-foot wide portion of the corridor would be maintained in low-growing vegetation for pipeline maintenance and would not provide habitat for the species during the life of the project. Hygrophorus caeruleus is not likely to persist at one of the sites in the project area because of the extent of impacts and the proximity of the recorded observation to the corridor. Hygrophorus caeruleus is likely to persist at the remaining three sites in the project area (MP 168.8 and MP 172.4 (north), and MP 172.5-172.7) because the majority of observations within the sites are more than 90 feet from the corridor, where direct effects are not anticipated and indirect effects are unlikely. The site at MP 168.8 is in a forested area on an east-facing slope, and a paved road occurs through the southeast part of the site. Four out of five observations are more than 90 feet southwest of the corridor and are not likely to be directly or indirectly affected by the PCGP Project based on the distance from the corridor, extent of forests surrounding the observations, and proximity to an existing open corridor (the road), indicating the species is likely resilient to edge- related effects at the site. -
Conservation Status Assessment
Element Ranking Form Oregon Biodiversity Information Center Conservation Status Assessment Scientific Name: Fayodia bisphaerigera Classification: Fungus Assessment area: Global Heritage Rank: G3Q Rank Date: 3/9/2017 Assigned Rank Comments: None. Rank Adjustment Notes: Found over a wide range but rare within its range. In 2017 L. Norvell says "A good species; widespread in Asia, Europe (including Iceland), North America; critically threatened in Czech Republic (Holec & Beran 2006, Holec & al. 2015), France (Larent-Dargent 2009), and on Norway red list; 22 historical occurrences noted in Region 6. Antonín (2004) provides an excellent description of the European type material. NOTE: In 2002 Norvell noted taxonomic confusion between F. bisphaerigera and 'Mycena rainierensis' to be resolved when Redhead combined M. rainierensis in Fayodia. As no such transfer has been made, the status of the PNW taxon remains unresolved. The PNW reports of F. 'biphaerigera', would reflect the rarity accurately, and current ranking accepted until taxonomy is resolved." (Holec, Jan; Beran, Miroslav (eds.) 2006. Red list of fungi (macromycetes) of the Czech Republic]. – Příroda, Praha, 24: 1-282. [in Czech with English summary] ; Holec, Jan; Kříž, Martin; Pouzar, Zdeněk; Šandová, Markéta. 2015. Boubínský prales virgin forest, a Central European refugium of boreal-montane and old-growth forest fungi. Czech Mycology 67(2): 157–226. ; Laurent-Dargent, Jonathan. 2009. La Liste Rouge des Champignons (macromycètes) rares ou menacés de Lorraine. Thesis for Docteur de Pharmacie: Universite Henry Poincare - Nancy I. 120 pp ; Antonín, Vladimír. 2004. Notes on the genus Fayodia s.l. (Tricholomataceae) — II. Type studies of European species described in the genera Fayodia and Gamundia. -
Two Case Studies Detailing Bayesian Parameter Inference for Dynamic Energy Budget Models
bioRxiv preprint doi: https://doi.org/10.1101/259705; this version posted July 30, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Two case studies detailing Bayesian parameter inference for dynamic energy budget models Philipp H. Boersch-SupanA,B,C,1 and Leah R. JohnsonD,2 July 30, 2018 ADepartment of Geography, University of Florida, Gainesville, FL 32611, USA BEmerging Pathogens Institute, University of Florida, Gainesville, FL 32610, USA CDepartment of Integrative Biology, University of South Florida, Tampa, FL 33610, USA DDepartment of Statistics, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA [email protected] - ORCID ID 0000-0001-6723-6833 [email protected] - ORCID ID 0000-0002-9922-579X Abstract Mechanistic representations of individual life-history trajectories are powerful tools for the pre- diction of organismal growth, reproduction and survival under novel environmental conditions. Dynamic energy budget (DEB) theory provides compact models to describe the acquisition and allocation of energy by organisms over their full life cycle. However, estimating DEB model param- eters, and their associated uncertainties and covariances, is not trivial. Bayesian inference provides a coherent way to estimate parameter uncertainty, and propagate it through the model, while also making use of prior information to constrain the parameter space. We outline a Bayesian inference approach for energy budget models and provide two case studies – based on a simplified DEBkiss model, and the standard DEB model – detailing the implementation of such inference procedures using the open-source software package deBInfer. -
Dinosaur Energetics: Setting the Bounds on Feasible Physiologies and Ecologies
Dinosaur energetics: setting the bounds on feasible physiologies and ecologies Andrew Clarke 1,2,* 1. British Antarctic Survey, High Cross, Madingley Road, Cambridge CB3 0ET, U.K. 2. School of Environmental Sciences, University of East Anglia, Norwich NR4 7TJ, U.K. *Corresponding author; e-mail: [email protected] Article type: Synthesis Keywords: dinosaur, energetics, growth, metabolism, migration, size, temperature. Accepted for publication by American Naturalist on 29 March 2013 and published electronically on 19 July 2013. American Naturalist 182 (3): 283-297, 2013; doi: 10.1086/671259). See: http://www.jstor.org/stable/10.1086/670340. ___________________________________________________________________________ ABSTRACT: The metabolic status of dinosaurs has long been debated but remains unresolved as no consistent picture has yet emerged from a range of anatomical and isotopic evidence. Quantitative analysis of dinosaur energetics, based on general principles applicable to all vertebrates, shows that many features of dinosaur lifestyle are compatible with a physiology similar to that of extant lizards, scaled up to dinosaur body masses and temperatures. Sufficient metabolic scope would have been available to support observed dinosaur growth rates and allow considerable locomotor activity, perhaps even migration. Since at least one dinosaur lineage evolved true endothermy, this analysis emphasises that there was no single dinosaur physiology. Many small theropods were insulated with feathers and appear to have been partial or full endotherms. Uninsulated small taxa, and all juveniles, would presumably have been ectothermic, with consequent diurnal and seasonal variations in body temperature. In larger taxa inertial homeothermy would have resulted in warm and stable body temperatures, but with a basal metabolism significantly below that of living mammals or birds of the same size. -
Hans Halbwachs
Hans Halbwachs hat are fungal characteristics Moreover, the variability of spore traits in winter. It has been speculated that good for? Well, for identifying is bewildering (as was discussed by Else this may be a strategy to avoid predators fungi, of course! Field Vellinga in the previous issue of FUNGI). (Halbwachs et al., 2016), though this Wmycologists all over the world are living Size, ornamentation, and pigmentation would imply investment, e.g., into encyclopedias when it comes to fungal occur in all combinations (Fig. 2). These antifreeze substances and producing traits. Even the most subtle differences are the visible characteristics which may relatively small fruit bodies, as in in spore size or cap coloration have their be grouped in (1) morphological (shape, Flammulina velutipes or Hygrophorus place in identifying mushrooms and size) and (2) physiological (pigments, hypothejus. Generally, species fruiting other fungi. Quite many mycologists are taste, smell, toxicity, etc.). A third, more in late autumn seem to have larger intrigued by the endless variations, for mysterious trait, is the phenology of fruit fruit bodies, at least in Cortinarius instance of fruit bodies (Fig. 1). bodies. Some do it in spring, some even (Halbwachs, 2018). Figure 1. Examples of basidiomycete fruit body shapes and colors. From left to right top: Amanita flavoconia (courtesy J. Veitch), Lactarius indigo (courtesy A. Rockefeller), Butyriboletus frostii (courtesy D. Molter); bottom: Calostoma cinnabarinum (courtesy D. Molter), Tricholomopsis decora (courtesy W. Sturgeon), Mycena adonis (courtesy D. Molter). creativecommons. org/licenses/by-sa/3.0/deed.en. 18 FUNGI Volume 12:1 Spring 2019 Knockin’ on Evolution’s Door Although some ideas are circulating about the functionality of fungal traits, mycologists want to know more about their ecological implications. -
Fungal Diversity in the Mediterranean Area
Fungal Diversity in the Mediterranean Area • Giuseppe Venturella Fungal Diversity in the Mediterranean Area Edited by Giuseppe Venturella Printed Edition of the Special Issue Published in Diversity www.mdpi.com/journal/diversity Fungal Diversity in the Mediterranean Area Fungal Diversity in the Mediterranean Area Editor Giuseppe Venturella MDPI • Basel • Beijing • Wuhan • Barcelona • Belgrade • Manchester • Tokyo • Cluj • Tianjin Editor Giuseppe Venturella University of Palermo Italy Editorial Office MDPI St. Alban-Anlage 66 4052 Basel, Switzerland This is a reprint of articles from the Special Issue published online in the open access journal Diversity (ISSN 1424-2818) (available at: https://www.mdpi.com/journal/diversity/special issues/ fungal diversity). For citation purposes, cite each article independently as indicated on the article page online and as indicated below: LastName, A.A.; LastName, B.B.; LastName, C.C. Article Title. Journal Name Year, Article Number, Page Range. ISBN 978-3-03936-978-2 (Hbk) ISBN 978-3-03936-979-9 (PDF) c 2020 by the authors. Articles in this book are Open Access and distributed under the Creative Commons Attribution (CC BY) license, which allows users to download, copy and build upon published articles, as long as the author and publisher are properly credited, which ensures maximum dissemination and a wider impact of our publications. The book as a whole is distributed by MDPI under the terms and conditions of the Creative Commons license CC BY-NC-ND. Contents About the Editor .............................................. vii Giuseppe Venturella Fungal Diversity in the Mediterranean Area Reprinted from: Diversity 2020, 12, 253, doi:10.3390/d12060253 .................... 1 Elias Polemis, Vassiliki Fryssouli, Vassileios Daskalopoulos and Georgios I. -
Leaf Radiative Properties and the Leaf Energy Budget
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Agronomy & Horticulture -- Faculty Publications Agronomy and Horticulture Department 2005 Leaf Radiative Properties and the Leaf Energy Budget Timothy J. Arkebauer University of Nebraska-Lincoln, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/agronomyfacpub Arkebauer, Timothy J., "Leaf Radiative Properties and the Leaf Energy Budget" (2005). Agronomy & Horticulture -- Faculty Publications. 693. https://digitalcommons.unl.edu/agronomyfacpub/693 This Article is brought to you for free and open access by the Agronomy and Horticulture Department at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Agronomy & Horticulture -- Faculty Publications by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. 5 Leaf Radiative Properties and the Leaf Energy Budget T.J. ARKEBAUER University of Nebraska Lincoln, Nebraska Leaf radiative properties are the physical properties of leaves that characterize radiant energy exchange with their surroundings. Radiant energy exchange is an important consideration in studies of plant function since, for example, absorp- tion of photosynthetically active radiation (PAR) leads to the transformation of this energy into chemical energy via photosynthesis. Thus, plant productivity, and hence, agricultural production, ultimately depend on leaf radiative properties. Leaf temperature is an additional, very important, parameter in intimate association with leaf radiant energy exchange. This association occurs since energy gained via radiation must be in balance with energy lost through various processes and energy loss from the leaf is predicated on leaf temperature. Leaf temperature is a critical factor determining leaf transpiration (hence, crop water use), reaction rates of biochemical processes (hence, photosynthetic rates, respi- ration rates, growth rates and productivity), and many other aspects of plant func- tion. -
21 August 2021 Aperto
AperTO - Archivio Istituzionale Open Access dell'Università di Torino Gamundia nivea sp. nov. (Basidiomycota, Agaricomycetes) from central Europe (France) This is the author's manuscript Original Citation: Availability: This version is available http://hdl.handle.net/2318/78020 since 2016-10-06T15:44:51Z Published version: DOI:10.1111/j.1756-1051.2010.00783.x Terms of use: Open Access Anyone can freely access the full text of works made available as "Open Access". Works made available under a Creative Commons license can be used according to the terms and conditions of said license. Use of all other works requires consent of the right holder (author or publisher) if not exempted from copyright protection by the applicable law. (Article begins on next page) 06 October 2021 This is the author's final version of the contribution published as: E. Musumeci; M. Contu; A. Vizzini. Gamundia nivea sp. nov. (Basidiomycota, Agaricomycetes) from central Europe (France). NORDIC JOURNAL OF BOTANY. 28(4) pp: 428-431. DOI: 10.1111/j.1756-1051.2010.00783.x The publisher's version is available at: http://doi.wiley.com/10.1111/j.1756-1051.2010.00783.x When citing, please refer to the published version. Link to this full text: http://hdl.handle.net/2318/78020 This full text was downloaded from iris - AperTO: https://iris.unito.it/ iris - AperTO University of Turin’s Institutional Research Information System and Open Access Institutional Repository Gamundia nivea sp. nov. (Basidiomycota, Agaricomycetes) from central Europe (France) Authors E. Musumeci, M. Contu, A. Vizzini Abstract The new species Gamundia nivea is described from an Abies alba wood in France. -
The Body's Energy Budget
The Body’s Energy Budget energy is measured in units called kcals = Calories the more H’s a molecule contains the more ATP (energy) can be generated of the various energy pathways: fat provides the most energy for its weight note all the H’s more oxidation can occur eg: glucose has 12 H’s 38ATP’s a 16-C FA has 32 H’s 129ATP’s we take in energy continuously we use energy periodically optimal body conditions when energy input = energy output any excess energy intake is stored as fat average person takes in ~1 Million Calories and expends 99% of them maintains energy stability 1 lb of body fat stores 3500 Calories 454g: 87% fat 395g x 9 Cal/g = 3555 kcal would seem if you burn an extra 3500 Cal you would lose 1 lb; and if you eat an extra 3500 Cal you would gain 1 lb not always so: 1. when a person overeats much of the excess energy is stored; some is spent to maintain a heavier body 2. People seem to gain more body fat when they eat extra fat calories than when they eat extra carbohydrate calories 3. They seem to lose body fat most efficiently when they limit fat calories For overweight people a reasonable rate of wt loss is 1/2 – 1 lb/week can be achieved with Cal intake of ~ 10 Cal/lb of body wt. Human Anatomy & Physiology: Nutrition and Metabolism; Ziser, 2004 5 Quicker Weight Loss: 1. may lose lean tissue 2. may not get 100% of nutrients 3. -
Předmluva (Jan Holec) Úvod Metodika
Obsah Předmluva (Jan Holec) 5 Úvod Obecné vymezení hub a skupiny hub zpracované v Červeném seznamu (Jan Holec) 7 Role a postavení hub (makromycetů) v ekosystémech (Jan Holec) 8 Ekologické skupiny makromycetů 8 Faktory, které určují výskyt makromycetů v přírodě 10 Shrnutí 16 Literatura 16 Úbytek hub a jeho příčiny (Miroslav Beran) 17 Začátek ústupu hub v ČR a jeho hlavní příčina 17 Přirozené příčiny úbytku hub 17 Člověkem způsobené příčiny úbytku hub 18 Literatura 22 Stručná historie ochrany hub na území České republiky (Jan Holec & Jan Borovička) 23 Ochrana hub v bývalém Československu 23 Ochrana hub od začátku devadesátých let 20. století 25 Vstup do Evropské unie a ochrana hub 26 Shrnutí 27 Literatura 28 Metodika (Jan Holec) Specifika hub při studiu jejich výskytu a rozšíření 31 Metodika tvorby červených seznamů podle IUCN 31 Aplikace kritérií a kategorií ohrožení pro potřebu hub a území ČR 33 Základní principy použité při tvorbě Červeného seznamu hub ČR 33 Kategorie ohrožení použité v Červeném seznam hub ČR 35 Výběr druhů a shromažďování údajů pro Červený seznam 38 Členění seznamu 39 Struktura textů o jednotlivých druzích 39 Nedostatečně zpracované nebo nezpracované skupiny hub 43 Autoři textů o jednotlivých rodech hub 43 Červený seznam hub na internetu 45 Literatura 45 3 Výsledky (Vladimír Antonín, Miroslav Beran, Zuzana Bieberová, Jan Borovička, Jiří Burel, Karel Čížek, Helena Deckerová, Daniel Dvořák, Michal Graca, Jan Holec, Petr Hrouda, Václav Janda, Oldřich Jindřich, František Kotlaba, Zdeněk Pouzar, Mirko Svrček, Josef Šutara, -
1 the SOCIETY LIBRARY CATALOGUE the BMS Council
THE SOCIETY LIBRARY CATALOGUE The BMS Council agreed, many years ago, to expand the Society's collection of books and develop it into a Library, in order to make it freely available to members. The books were originally housed at the (then) Commonwealth Mycological Institute and from 1990 - 2006 at the Herbarium, then in the Jodrell Laboratory,Royal Botanic Gardens Kew, by invitation of the Keeper. The Library now comprises over 1100 items. Development of the Library has depended largely on the generosity of members. Many offers of books and monographs, particularly important taxonomic works, and gifts of money to purchase items, are gratefully acknowledged. The rules for the loan of books are as follows: Books may be borrowed at the discretion of the Librarian and requests should be made, preferably by post or e-mail and stating whether a BMS member, to: The Librarian, British Mycological Society, Jodrell Laboratory Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB Email: <[email protected]> No more than two volumes may be borrowed at one time, for a period of up to one month, by which time books must be returned or the loan renewed. The borrower will be held liable for the cost of replacement of books that are lost or not returned. BMS Members do not have to pay postage for the outward journey. For the return journey, books must be returned securely packed and postage paid. Non-members may be able to borrow books at the discretion of the Librarian, but all postage costs must be paid by the borrower. -
Physical Bioenergetics: Energy Fluxes, Budgets, And
PERSPECTIVE Physical bioenergetics: Energy fluxes, budgets, and constraints in cells PERSPECTIVE Xingbo Yanga,b,1,2, Matthias Heinemannc, Jonathon Howardd, Greg Hubere, Srividya Iyer-Biswasf,g, Guillaume Le Treute, Michael Lynchh, Kristi L. Montoothi, Daniel J. Needlemana,b,j, Simone Pigolottik, Jonathan Rodenfelsl, Pierre Ronceraym,n, Sadasivan Shankarb,o,p, Iman Tavassolyq,3, Shashi Thutupallir,s, Denis V. Titovt,u,v, Jin Wangw, and Peter J. Fosterx,1,2 Edited by Christopher Jarzynski, University of Maryland, College Park, MD, and approved May 10, 2021 (received for review January 5, 2021) Cells are the basic units of all living matter which harness the flow of energy to drive the processes of life. While the biochemical networks involved in energy transduction are well-characterized, the energetic costs and constraints for specific cellular processes remain largely unknown. In particular, what are the energy budgets of cells? What are the constraints and limits energy flows impose on cellular processes? Do cells operate near these limits, and if so how do energetic constraints impact cellular functions? Physics has provided many tools to study nonequilibrium systems and to define physical limits, but applying these tools to cell biology remains a challenge. Physical bioenergetics, which resides at the interface of nonequilibrium physics, energy metabolism, and cell biology, seeks to understand how much energy cells are using, how they partition this energy between different cellular processes, and the associated energetic constraints. Here we review recent advances and discuss open questions and challenges in physical bioenergetics. physical bioenergetics | energy fluxes | energetic costs | energetic constraints Cells function out of thermodynamic equilibrium: They Rates of energy flows are characterized by energy use metabolic pathways to transform matter and en- fluxes, which can be used to quantify energetic costs.