Viruses in Food: Scientific Advice to Support Risk Management Activities
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Noroviruses: Q&A
University of California, Berkeley 2222 Bancroft Way Berkeley, CA 94720 Appointments 510/642-2000 Online Appointment www.uhs.berkeley.edu Noroviruses: Q&A What are noroviruses? Noroviruses are a group of viruses that cause the “stomach flu” or gastroenteritis (GAS-tro-enter-I-tis) in people. The term “norovirus” was recently approved as the official name for this group of viruses. Several other names have been used for noroviruses, including: • Norwalk-like viruses (NLVs) • caliciviruses (because they belong to the virus family Caliciviridae) • small round structured viruses. Viruses are very different from bacteria and parasites, some of which can cause illnesses similar to norovirus infection. Viruses are much smaller, are not affected by treatment with antibiotics, and cannot grow outside of a person’s body. What are the symptoms of illness caused by noroviruses? The symptoms of norovirus illness usually include nausea, vomiting, diarrhea, and some stomach cramping. Sometimes people additionally have a low-grade fever, chills, headache, muscle aches and a general sense of tiredness. The illness often begins suddenly, and the infected person may feel very sick. The illness is usually brief, with symptoms lasting only about one or two days. In general, children experience more vomiting than adults. Most people with norovirus illness have both of these symptoms. What is the name of the illness caused by noroviruses? Illness caused by norovirus infection has several names, including: • stomach flu – this “stomach flu” is not related to the flu (or influenza), which is a respiratory illness caused by influenza virus • viral gastroenteritis – the most common name for illness caused by norovirus. -
Viral Hepatitis Testing Effective Date: January 1, 2012
Viral Hepatitis Testing Effective Date: January 1, 2012 Scope This guideline provides guidance for the use of laboratory tests to diagnose acute and chronic viral hepatitis in adults (> 19 years) in the primary care setting. General Considerations for Ordering Laboratory Tests Prior to ordering tests for hepatitis, consider the patient’s history, age, risk factors (see below), hepatitis vaccination status, and any available previous hepatitis test results. Risk Factors for Viral Hepatitis include: • Substance use (includes sharing drug snorting, smoking or injection equipment) • High-risk sexual activity or sexual partner with viral hepatitis • Travel to or from high-risk hepatitis endemic areas or exposure during a local outbreak • Immigration from hepatitis B and/or C endemic countries • Household contact with an infected person especially if personal items (e.g., razors, toothbrushes, nail clippers) are shared • Recipient of unscreened blood products* • Needle-stick injury or other occupational exposure (e.g., healthcare workers) • Children born to mothers with chronic hepatitis B or C infection • Attendance at daycare • Contaminated food or water (hepatitis A only) • Tattoos and body piercing • History of incarceration • HIV or other sexually transmitted infection • Hemodialysis *screening of donated blood products for hepatitis C (anti-HCV) began in 1990 in Canada.1 Types of Viral Hepatitis Hepatitis A: causes acute but not chronic hepatitis Hepatitis B: causes acute and chronic hepatitis Hepatitis C: causes chronic hepatitis but rarely manifests as acute hepatitis Hepatitis D: rare and only occurs in patients infected with hepatitis B Hepatitis E: clinically similar to hepatitis A, mostly restricted to endemic areas and occasionally causes chronic infection in immunosuppressed people Others: e.g. -
Prevention & Control of Viral Hepatitis Infection
Prevention & Control of Viral Hepatitis Infection: A Strategy for Global Action © World Health Organization 2011. All rights reserved. The designations employed and the presentation of the material in this publication do not imply the expression of any opinion whatsoever on the part of the World Health Organization concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. Dotted lines on maps represent approximate border lines for which there may not yet be full agreement. The mention of specific companies or of certain manufacturers’ products does not imply that they are endorsed or recommended by the World Health Organization in preference to others of a similar nature that are not mentioned. Errors and omissions excepted, the names of proprietary products are distinguished by initial capital letters. All reasonable precautions have been taken by WHO to verify the information contained in this publication. However, the published material is being distributed without warranty of any kind, either express or implied. The responsibility for the interpretation and use of the material lies with the reader. In no event shall the World Health Organization be liable for damages arising from its use. Table of contents Disease burden 02 What is viral hepatitis? 05 Prevention & control: a tailored approach 06 Global Achievements 08 Remaining challenges 10 World Health Assembly: a mandate for comprehensive prevention & control 13 WHO goals and strategy -
Fact Sheet Norovirus
New Hampshire Department of Health and Human Services Fact Sheet Division of Public Health Services Norovirus What is norovirus? How is norovirus infection diagnosed? Noroviruses are a group of viruses that cause Laboratory diagnosis is difficult but there are the “stomach flu,” or gastrointestinal tests that can be performed in the New (stomach and digestive) illness. Norovirus Hampshire Public Health Lab in situations infection occurs occasionally in only one or a where there are multiple cases. Diagnosis is few people or it can be responsible for large often based on the combination of symptoms outbreaks, such as in long-term care facilities. and the short time of the illness. Who gets norovirus? What is the treatment for norovirus Norovirus infects people of all ages infection? worldwide. It may, however, be more No specific treatment is available. People who common in adults and older children. become dehydrated might need to be rehydrated by taking liquids by mouth. How does someone get norovirus? Occasionally patients may need to be Norovirus is spread from person to person via hospitalized to receive intravenous fluids. feces, but some evidence suggests that the virus is spread through the air during How can norovirus be prevented? vomiting. Good hand washing is the most While there is no vaccine for norovirus, there important way to prevent the transmission of are precautions people should take: norovirus. Outbreaks have been linked to sick • Wash hands with soap and warm water food handlers, ill health care workers, cases in after using the bathroom and after facilities such as nursing homes spreading to changing diapers other residents, contaminated shellfish, and • Wash hands with soap and warm water water contaminated with sewage. -
Detection of ESKAPE Pathogens and Clostridioides Difficile in Simulated
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.04.433847; this version posted March 4, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Detection of ESKAPE pathogens and Clostridioides difficile in 2 Simulated Skin Transmission Events with Metagenomic and 3 Metatranscriptomic Sequencing 4 5 Krista L. Ternusa#, Nicolette C. Keplingera, Anthony D. Kappella, Gene D. Godboldb, Veena 6 Palsikara, Carlos A. Acevedoa, Katharina L. Webera, Danielle S. LeSassiera, Kathleen Q. 7 Schultea, Nicole M. Westfalla, and F. Curtis Hewitta 8 9 aSignature Science, LLC, 8329 North Mopac Expressway, Austin, Texas, USA 10 bSignature Science, LLC, 1670 Discovery Drive, Charlottesville, VA, USA 11 12 #Address correspondence to Krista L. Ternus, [email protected] 13 14 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.04.433847; this version posted March 4, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 15 1 Abstract 16 Background: Antimicrobial resistance is a significant global threat, posing major public health 17 risks and economic costs to healthcare systems. Bacterial cultures are typically used to diagnose 18 healthcare-acquired infections (HAI); however, culture-dependent methods provide limited 19 presence/absence information and are not applicable to all pathogens. -
Choosing the Appropriate Surface Disinfectant
antibiotics Review Back to Basics: Choosing the Appropriate Surface Disinfectant Angelica Artasensi , Sarah Mazzotta and Laura Fumagalli * Dipartimento di Scienze Farmaceutiche, Università degli Studi di Milano, Via L. Mangiagalli 25, 20133 Milano, Italy; [email protected] (A.A.); [email protected] (S.M.) * Correspondence: [email protected]; Tel.: +39-0250319303 Abstract: From viruses to bacteria, our lives are filled with exposure to germs. In built environments, exposure to infectious microorganisms and their byproducts is clearly linked to human health. In the last year, public health emergency surrounding the COVID-19 pandemic stressed the importance of having good biosafety measures and practices. To prevent infection from spreading and to maintain the barrier, disinfection and hygiene habits are crucial, especially when the microorganism can persist and survive on surfaces. Contaminated surfaces are called fomites and on them, microorganisms can survive even for months. As a consequence, fomites serve as a second reservoir and transfer pathogens between hosts. The knowledge of microorganisms, type of surface, and antimicrobial agent is fundamental to develop the best approach to sanitize fomites and to obtain good disinfection levels. Hence, this review has the purpose to briefly describe the organisms, the kind of risk associated with them, and the main classes of antimicrobials for surfaces, to help choose the right approach to prevent exposure to pathogens. Keywords: antimicrobial; disinfectant; surface disinfection; fomite; surface contamination; microor- ganisms Citation: Artasensi, A.; Mazzotta, S.; Fumagalli, L. Back to Basics: Choosing the Appropriate Surface 1. Introduction Disinfectant. Antibiotics 2021, 10, 613. In built environment, especially considering an indoor lifestyle, touching objects https://doi.org/10.3390/ or surfaces which surround us is integral to everyday life. -
Diarrheal Illness
Diarrheal Illness [Announcer] This program is presented by the Centers for Disease Control and Prevention. [Karen Hunter] Hi, I’m Karen Hunter and today I’m talking with Dr. Steve Monroe, director of CDC’s Division of High-Consequence Pathogens and Pathology. Our conversation is based on his paper about viral gastroenteritis, which appears in CDC's journal, Emerging Infectious Diseases. Welcome Dr. Monroe. [Steve Monroe] Thank you Karen, it’s a pleasure to be here. [Karen Hunter] Dr. Monroe, what is viral gastroenteritis? [Steve Monroe] Gastroenteritis is an irritation of the stomach or intestinal tract. Most people experience this as severe diarrhea, vomiting, and stomach pain. For this reason, it is often referred to as stomach flu, even though it is not caused by a flu virus. The more general term is “diarrheal illness.” When caused by a virus, it is known as viral gastroenteritis. There are several viruses that can cause this illness. [Karen Hunter] Your paper focuses on two of these viruses – norovirus and rotavirus. What are the main differences between the two of them? [Steve Monroe] The main differences between norovirus and rotavirus are in the age of people most affected and in the approaches we use for control and prevention. Norovirus can infect people of all ages, while rotavirus is most commonly found in young children. And, while there’s an effective vaccine to prevent rotavirus infection, current efforts to control norovirus illness rely primarily on emphasizing good personal hygiene and infection control practices. [Karen Hunter] We’d like to hear about both of these viruses. -
Characterizing and Evaluating the Zoonotic Potential of Novel Viruses Discovered in Vampire Bats
viruses Article Characterizing and Evaluating the Zoonotic Potential of Novel Viruses Discovered in Vampire Bats Laura M. Bergner 1,2,* , Nardus Mollentze 1,2 , Richard J. Orton 2 , Carlos Tello 3,4, Alice Broos 2, Roman Biek 1 and Daniel G. Streicker 1,2 1 Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK; [email protected] (N.M.); [email protected] (R.B.); [email protected] (D.G.S.) 2 MRC–University of Glasgow Centre for Virus Research, Glasgow G61 1QH, UK; [email protected] (R.J.O.); [email protected] (A.B.) 3 Association for the Conservation and Development of Natural Resources, Lima 15037, Peru; [email protected] 4 Yunkawasi, Lima 15049, Peru * Correspondence: [email protected] Abstract: The contemporary surge in metagenomic sequencing has transformed knowledge of viral diversity in wildlife. However, evaluating which newly discovered viruses pose sufficient risk of infecting humans to merit detailed laboratory characterization and surveillance remains largely speculative. Machine learning algorithms have been developed to address this imbalance by ranking the relative likelihood of human infection based on viral genome sequences, but are not yet routinely Citation: Bergner, L.M.; Mollentze, applied to viruses at the time of their discovery. Here, we characterized viral genomes detected N.; Orton, R.J.; Tello, C.; Broos, A.; through metagenomic sequencing of feces and saliva from common vampire bats (Desmodus rotundus) Biek, R.; Streicker, D.G. and used these data as a case study in evaluating zoonotic potential using molecular sequencing Characterizing and Evaluating the data. -
Mechanistic Transmission Modeling of COVID-19 on the Diamond Princess Cruise Ship Demonstrates the Importance of Aerosol Transmission
Mechanistic transmission modeling of COVID-19 on the Diamond Princess cruise ship demonstrates the importance of aerosol transmission Parham Azimia,1, Zahra Keshavarza, Jose Guillermo Cedeno Laurenta, Brent Stephensb, and Joseph G. Allena,1 aEnvironmental Health Department, Harvard T.H. Chan School of Public Health, Boston, MA 02115; and bDepartment of Civil, Architectural, and Environmental Engineering, Illinois Institute of Technology, Chicago, IL 60616 Edited by Andrea Rinaldo, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland, and approved January 7, 2021 (received for review July 22, 2020) Several lines of existing evidence support the possibility of spreads (3). CDC has also acknowledged that airborne trans- airborne transmission of coronavirus disease 2019 (COVID-19). mission by smaller droplets traveling more than 1.8 m away from However, quantitative information on the relative importance of infected individual(s) can sometimes occur (4). transmission pathways of severe acute respiratory syndrome coro- Since the beginning of the pandemic, numerous researchers navirus 2 (SARS-CoV-2) remains limited. To evaluate the relative (5–15) and professional societies [e.g., American Society of Heat- importance of multiple transmission routes for SARS-CoV-2, we ing, Refrigerating and Air-Conditioning Engineers (16)] have raised developed a modeling framework and leveraged detailed informa- concerns that transmission of SARS-CoV-2 can occur from both tion available from the Diamond Princess cruise ship outbreak that symptomatic and asymptomatic (or presymptomatic) individuals to occurred in early 2020. We modeled 21,600 scenarios to generate a others beyond close-range contact through a combination of larger matrix of solutions across a full range of assumptions for eight respiratory droplets that are carried further than 1 to 2 m via air- unknown or uncertain epidemic and mechanistic transmission fac- flow patterns and smaller inhalable aerosols that can remain sus- R2 > tors. -
Enveloped Viruses Are More Sensitive to Heat, Dry & Other Factors Than Nonenveloped Vs Glycoprotein Attaches to Host Cell Receptor
هذا العمل ﻻ يغني عن المرجع اﻷساسي للمذاكرة Lecture 5 Introduction to Viruses • Important • Term • Extra explanation • Additional notes Objectives • General characteristics of viruses. • Structure & symmetry of viruses. • Classification of viruses. • Steps of virus replication. • Laboratory diagnosis of viral infections. REMEMBER! Properties of Microorganisms Characteristics Parasites Fungi Bacteria Viruses Cell Yes Yes Yes NO Type of Nucleus Eukaryotic Eukaryotic Prokaryotic - DNA DNA DNA DNA Nucleic Acid and RNA and RNA and RNA or RNA Ribosomes Present Present Present Absent Mitochondria Present Present Present Absent Budding or Replication Mitosis Binary Fission Special Mitosis General characteristics of Viruses Non-living, non- cellular organism (Acellular organisms) that can’t be observed by light microscope. Obligate intracellular organism, doesn’t live outside the host cell. Internal core of nucleic acid “DNA or RNA”. Composed of Protein coat surrounds the Nucleic Acid called tiny particles: “Capsid”. Some viruses have a Replicate in a matter lipoprotein membrane of diff from cells “Envelope” 1V (virus) many Vs (Viruses) Don’t have organelles like ribosomes or mitochondria Structure of viruses The tiniest virus is only 20 nm in diameter, while the largest is several hundred nanometers – which is barley visible under the L/M. Some viruses could be crystallized. Viruses that infect bacteria are called Bacteriophage or Phages Viral genome Double- Single- Double- Single- stranded DNA stranded DNA stranded RNA stranded RNA (dsDNA) (ssDNA) (dsRNA) (ssRNA) o The smallest virus has only 4 genes while the largest has several hundreds to thousand. o All DNA Viruses have Double-stranded (ds) except Parvoviruses. o All RNA Viruses have Single-stranded (ss) except Reoviruses. -
Chapter 6 an Introduction to Viruses Introduction All Life-Forms Can Be Infected by Viruses
Chapter 6 An Introduction to Viruses Introduction All life-forms can be infected by viruses. Some viruses generate serious epidemics, from dengue fever to influenza to AIDS. Others fill essential niches in the environment, particularly in marine ecosystems. In research, viruses have provided both tools and model systems in molecular biology. This 11-inch-high limestone Egyptian funerary stele is from Saqqara, 10 miles south of Cairo; Amarna Period, 18th Dynasty (1403-1365 BCE), Glyptotek Museum, Copenhagen. The stele portrays Roma (or Rema), an Egyptian doorkeeper, and his family giving offerings to the Goddess Astarte. Thought to be the earliest depiction of a victim of poliomyelitis, the man adeptly carries a goblet while supporting himself with a staff. His withered right leg and deformed right foot are characteristic of poliomyelitis. Ramses V, Pharaoh of Egypt He died ~1145 BCE, presumably of smallpox. His mummified head and torso bear the characteristic lesions of the disease. Smallpox victims included many other rulers throughout history, among them Louis XV of France, Mary II of England, and the Holy Roman Emperor Joseph I. The search for the elusive virus Louis Pasteur postulated that rabies was caused by a virus (1884) Ivanovski and Beijerinck showed a disease in tobacco was caused by a virus (1890s) Viruses: non-cellular particles with a definite size, shape, and chemical composition Viral diseases led to the development of some of the first vaccines. Poliovirus causes poliomyelitis, which can lead to paralysis. President Franklin Roosevelt established the March of Dimes. With its support, Jonas Salk developed the first polio vaccine in 1952. -
Non-Norovirus Viral Gastroenteritis Outbreaks Reported to the National Outbreak Reporting System, USA, 2009–2018 Claire P
Non-Norovirus Viral Gastroenteritis Outbreaks Reported to the National Outbreak Reporting System, USA, 2009–2018 Claire P. Mattison, Molly Dunn, Mary E. Wikswo, Anita Kambhampati, Laura Calderwood, Neha Balachandran, Eleanor Burnett, Aron J. Hall During 2009–2018, four adenovirus, 10 astrovirus, 123 The Study rotavirus, and 107 sapovirus gastroenteritis outbreaks NORS is a dynamic, voluntary outbreak reporting were reported to the US National Outbreak Reporting system. For each reported outbreak, health depart- System (annual median 30 outbreaks). Most were at- ments report the mode of transmission, number of tributable to person-to-person transmission in long-term confirmed and suspected cases, and aggregate epi- care facilities, daycares, and schools. Investigations of demiologic and demographic information as avail- norovirus-negative gastroenteritis outbreaks should in- able. NORS defines outbreaks as >2 cases of similar clude testing for these viruses. illness associated with a common exposure or epi- demiologic link (9). Health departments determine n the United States, ≈179 million cases of acute gas- reported outbreak etiologies on the basis of available troenteritis (AGE) occur annually (1). Norovirus is I laboratory, epidemiologic, and clinical data; specific the leading cause of AGE in the United States; other laboratory testing protocols vary by health depart- viral causes include adenovirus (specifically group F ment. Outbreak etiologies are considered confirmed or types 40 and 41), astrovirus, sapovirus, and rotavi- when >2 laboratory-confirmed cases are reported rus (2,3). These viruses are spread primarily through and considered suspected when <2 laboratory-con- the fecal–oral route through person-to-person contact firmed cases are reported. Outbreaks are considered or through contaminated food, water, or fomites (4–8).