Relating Threshold Tolerance Graphs to Other Graph Classes
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Discrete Mathematics Rooted Directed Path Graphs Are Leaf Powers
Discrete Mathematics 310 (2010) 897–910 Contents lists available at ScienceDirect Discrete Mathematics journal homepage: www.elsevier.com/locate/disc Rooted directed path graphs are leaf powers Andreas Brandstädt a, Christian Hundt a, Federico Mancini b, Peter Wagner a a Institut für Informatik, Universität Rostock, D-18051, Germany b Department of Informatics, University of Bergen, N-5020 Bergen, Norway article info a b s t r a c t Article history: Leaf powers are a graph class which has been introduced to model the problem of Received 11 March 2009 reconstructing phylogenetic trees. A graph G D .V ; E/ is called k-leaf power if it admits a Received in revised form 2 September 2009 k-leaf root, i.e., a tree T with leaves V such that uv is an edge in G if and only if the distance Accepted 13 October 2009 between u and v in T is at most k. Moroever, a graph is simply called leaf power if it is a Available online 30 October 2009 k-leaf power for some k 2 N. This paper characterizes leaf powers in terms of their relation to several other known graph classes. It also addresses the problem of deciding whether a Keywords: given graph is a k-leaf power. Leaf powers Leaf roots We show that the class of leaf powers coincides with fixed tolerance NeST graphs, a Graph class inclusions well-known graph class with absolutely different motivations. After this, we provide the Strongly chordal graphs largest currently known proper subclass of leaf powers, i.e, the class of rooted directed path Fixed tolerance NeST graphs graphs. -
Graph Isomorphism Completeness for Chordal Bipartite Graphs and Strongly Chordal Graphs
Graph Isomorphism Completeness for Chordal bipartite graphs and Strongly Chordal Graphs Ryuhei Uehara a Seinosuke Toda b Takayuki Nagoya c aNatural Science Faculty, Komazawa University. 1 bDepartment of Computer Science and System Analysis, College of Humanities and Sciences, Nihon University. cDepartment of Mathematical Sciences, Tokyo Denki University. Abstract This paper deals with the graph isomorphism (GI) problem for two graph classes: chordal bipartite graphs and strongly chordal graphs. It is known that GI problem is GI complete even for some special graph classes including regular graphs, bipar- tite graphs, chordal graphs, comparability graphs, split graphs, and k-trees with unbounded k. On the other side, the relative complexity of the GI problem for the above classes was unknown. We prove that deciding isomorphism of the classes are GI complete. Key words: Graph isomorphism problem, Graph isomorphism complete, Strongly chordal graphs, Chordal bipartite graphs 1 Introduction The graph isomorphism (GI) problem is a well-known problem and exploring its precise complexity has become an important open question in computa- tional complexity theory three decades ago (see (Kar72)). Although the prob- lem is trivially in NP, the problem is not known to be in P and not known to be NP-complete either (see (RC77; KST93)). It is very unlikely that the Email addresses: [email protected] (Ryuhei Uehara), [email protected] (Seinosuke Toda), [email protected] (Takayuki Nagoya). 1 This work was done while the author was visiting University of Waterloo. Preprint submitted to Elsevier Science 26 May 2004 GI problem is NP-complete. -
Closest 4-Leaf Power Is Fixed-Parameter Tractable ⋆
Discrete Applied Mathematics, to appear, 2008 Closest 4-Leaf Power is Fixed-Parameter Tractable ⋆ Michael Dom, Jiong Guo, Falk H¨uffner, Rolf Niedermeier Abstract The NP-complete Closest 4-Leaf Power problem asks, given an undirected graph, whether it can be modified by at most r edge insertions or deletions such that it becomes a 4-leaf power. Herein, a 4-leaf power is a graph that can be constructed by considering an unrooted tree—the 4-leaf root—with leaves one-to-one labeled by the graph vertices, where we connect two graph vertices by an edge iff their corresponding leaves are at distance at most 4 in the tree. Complementing previous work on Closest 2-Leaf Power and Closest 3-Leaf Power, we give the first algorithmic result for Closest 4-Leaf Power, showing that Closest 4-Leaf Power is fixed-parameter tractable with respect to the parameter r. Key words: fixed-parameter tractability, graph algorithm, graph modification, graph power, leaf power, forbidden subgraph characterization 1 Introduction Graph powers form a classical concept in graph theory, and the rich literature dates back to the sixties of the previous century (see [5, Sect. 10.6] and [27] for surveys). The k-power of an undirected graph G = (V, E) is the undirected graph Gk = (V, E′) with (u, v) ∈ E′ iff there is a path of length at most k between u and v in G. We say G is the k-root of Gk. It is NP-complete to decide whether a given graph is a 2-power (square) [30]. -
A Polynomial Kernel for 3-Leaf Power Deletion
A Polynomial Kernel for 3-Leaf Power Deletion Jungho Ahn Department of Mathematical Sciences, KAIST, Daejeon, South Korea Discrete Mathematics Group, Institute for Basic Science (IBS), Daejeon, South Korea [email protected] Eduard Eiben Department of Computer Science, Royal Holloway, University of London, Egham, UK [email protected] O-joung Kwon Department of Mathematics, Incheon National University, South Korea Discrete Mathematics Group, Institute for Basic Science (IBS), Daejeon, South Korea [email protected] Sang-il Oum Discrete Mathematics Group, Institute for Basic Science (IBS), Daejeon, South Korea Department of Mathematical Sciences, KAIST, Daejeon, South Korea [email protected] Abstract For a non-negative integer `, a graph G is an `-leaf power of a tree T if V pGq is equal to the set of leaves of T , and distinct vertices v and w of G are adjacent if and only if the distance between v and w in T is at most `. Given a graph G, 3-Leaf Power Deletion asks whether there is a set S Ď V pGq of size at most k such that GzS is a 3-leaf power of some tree T . We provide a polynomial kernel for this problem. More specifically, we present a polynomial-time algorithm for an input instance pG, kq to output an equivalent instance pG1, k1q such that k1 ¤ k and G1 has at most Opk14q vertices. 2012 ACM Subject Classification Theory of computation Ñ Design and analysis of algorithms; Theory of computation Ñ Graph algorithms analysis; Theory of computation Ñ Parameterized complexity and exact algorithms Keywords and phrases `-leaf power, parameterized algorithms, kernelization Digital Object Identifier 10.4230/LIPIcs.MFCS.2020.5 Related Version A full version of this paper is available at https://arxiv.org/abs/1911.04249. -
On Retracts, Absolute Retracts, and Folds In
ON RETRACTS,ABSOLUTE RETRACTS, AND FOLDS IN COGRAPHS Ton Kloks1 and Yue-Li Wang2 1 Department of Computer Science National Tsing Hua University, Taiwan [email protected] 2 Department of Information Management National Taiwan University of Science and Technology [email protected] Abstract. Let G and H be two cographs. We show that the problem to determine whether H is a retract of G is NP-complete. We show that this problem is fixed-parameter tractable when parameterized by the size of H. When restricted to the class of threshold graphs or to the class of trivially perfect graphs, the problem becomes tractable in polynomial time. The problem is also solvable in linear time when one cograph is given as an in- duced subgraph of the other. We characterize absolute retracts for the class of cographs. Foldings generalize retractions. We show that the problem to fold a trivially perfect graph onto a largest possible clique is NP-complete. For a threshold graph this folding number equals its chromatic number and achromatic number. 1 Introduction Graph homomorphisms have regained a lot of interest by the recent characteri- zation of Grohe of the classes of graphs for which Hom(G, -) is tractable [11]. To be precise, Grohe proves that, unless FPT = W[1], deciding whether there is a homomorphism from a graph G 2 G to some arbitrary graph H is polynomial if and only if the graphs in G have bounded treewidth modulo homomorphic equiv- alence. The treewidth of a graph modulo homomorphic equivalence is defined as the treewidth of its core, ie, a minimal retract. -
Recognizing Cographs and Threshold Graphs Through a Classification of Their Edges
Information Processing Letters 74 (2000) 129–139 Recognizing cographs and threshold graphs through a classification of their edges Stavros D. Nikolopoulos 1 Department of Computer Science, University of Ioannina, P.O. Box 1186, GR-45110 Ioannina, Greece Received 24 September 1999; received in revised form 17 February 2000 Communicated by K. Iwama Abstract In this work, we attempt to establish recognition properties and characterization for two classes of perfect graphs, namely cographs and threshold graphs, leading to constant-time parallel recognition algorithms. We classify the edges of an undirected graph as either free, semi-free or actual, and define the class of A-free graphs as the class containing all the graphs with no actual edges. Then, we define the actual subgraph Ga of a non-A-free graph G as the subgraph containing all the actual edges of G. We show properties and characterizations for the class of A-free graphs and the actual subgraph Ga of a cograph G, and use them to derive structural and recognition properties for cographs and threshold graphs. These properties imply parallel recognition algorithms which run in O.1/ time using O.nm/ processors. 2000 Elsevier Science B.V. All rights reserved. Keywords: Cographs; Threshold graphs; Edge classification; Graph partition; Recognition; Parallel algorithms; Complexity 1. Introduction early 1970s by Lerchs [12] who studied their struc- tural and algorithmic properties. Lerchs has shown, Cographs (also called complement reducible among other properties (see [1,5,6,13]), the following graphs) are defined as the graphs which can be reduced two very nice algorithmic properties: to single vertices by recursively complementing all (P1) cographs are exactly the P4 restricted graphs, connected subgraphs. -
On the Threshold of Intractability
On the Threshold of Intractability P˚alGrøn˚asDrange∗ Markus Sortland Dregi∗ Daniel Lokshtanov∗ Blair D. Sullivany May 4, 2015 Abstract We study the computational complexity of the graph modification problems Threshold Editing and Chain Editing, adding and deleting as few edges as possible to transform the input into a threshold (or chain) graph. In this article, we show that both problems are NP-hard, resolving a conjecture by Natanzon, Shamir, and Sharan (Discrete Applied Mathematics, 113(1):109{128, 2001). On the positive side, we show the problem admits a quadratic vertex kernel. Furthermore,p we give a subexponential time parameterized algorithm solving Threshold Editing in 2O( k log k) + poly(n) time, making it one of relatively few natural problems in this complexity class on general graphs. These results are of broader interest to the field of social network analysis, where recent work of Brandes (ISAAC, 2014) posits that the minimum edit distance to a threshold graph gives a good measure of consistency for node centralities. Finally, we show that all our positive results extend to the related problem of Chain Editing, as well as the completion and deletion variants of both problems. 1 Introduction In this paper we study the computational complexity of two edge modification problems, namely editing to threshold graphs and editing to chain graphs. Graph modification problems ask whether a given graph G can be transformed to have a certain property using a small number of edits (such as deleting/adding vertices or edges), and have been the subject of significant previous work [29,7,8,9, 25]. -
Parameterized Leaf Power Recognition Via Embedding Into Graph Products
Parameterized Leaf Power Recognition via Embedding into Graph Products David Eppstein1 Computer Science Department, University of California, Irvine, USA [email protected] Elham Havvaei Computer Science Department, University of California, Irvine, USA [email protected] Abstract The k-leaf power graph G of a tree T is a graph whose vertices are the leaves of T and whose edges connect pairs of leaves at unweighted distance at most k in T . Recognition of the k-leaf power graphs for k ≥ 7 is still an open problem. In this paper, we provide two algorithms for this problem for sparse leaf power graphs. Our results shows that the problem of recognizing these graphs is fixed-parameter tractable when parameterized both by k and by the degeneracy of the given graph. To prove this, we first describe how to embed a leaf root of a leaf power graph into a product of the graph with a cycle graph. We bound the treewidth of the resulting product in terms of k and the degeneracy of G. The first presented algorithm uses methods based on monadic second-order logic (MSO2) to recognize the existence of a leaf power as a subgraph of the graph product. Using the same embedding in the graph product, the second algorithm presents a dynamic programming approach to solve the problem and provide a better dependence on the parameters. Keywords and phrases leaf power, phylogenetic tree, monadic second-order logic, Courcelle’s theorem, strong product of graphs, fixed-parameter tractability, dynamic programming, tree decomposition 1 Introduction Leaf powers are a class of graphs that were introduced in 2002 by Nishimura, Ragde and Thilikos [41], extending the notion of graph powers. -
Polynomial Kernels for 3-Leaf Power Graph Modification Problems
Polynomial kernels for 3-leaf power graph modification problems∗ S. Bessy C. Paul A. Perez CNRS, LIRMM, Universit´eMontpellier 2, France † September 17, 2008 Abstract A graph G = (V, E) is a 3-leaf power iff there exists a tree T whose leaves are V and such that (u, v) ∈ E iff u and v are at distance at most 3 in T . The 3-leaf power graph edge modification problems, i.e. edition (also known as the closest 3-leaf power), completion and edge-deletion, are FTP when parameterized by the size of the edge set modification. However polynomial kernel was known for none of these three problems. For each of them, we provide cubic kernels that can be computed in linear time for each of these problems. We thereby answer an open problem first mentioned by Dom, Guo, H¨uffner and Niedermeier [6]. arXiv:0809.2858v2 [cs.DM] 17 Sep 2008 ∗Research supported by the ANR anr-blan-0148-06project ”Graph Decomposition on Algorithm (GRAAL)” †e-mail: [email protected], [email protected], [email protected] 1 Introduction An edge modification problem aims at changing the edge set of an input graph G = (V, E) in order to get a certain property Π satisfied (see [17] for a recent study). Edge modification prob- lems cover a broad range of graph optimization problems among which completion problems (e.g. minimum chordal completion), edition problems (e.g. cluster edition) and edge deletion problems (e.g. maximum planar subgraph). For completion problems, the set F of modified edges is constraint to be disjoint from E, whereas for edge deletion problems F has to be a subset of E. -
Polynomial Kernels for 3-Leaf Power Graph Modification Problems
Polynomial kernels for 3-leaf power graph modification problems∗ S. Bessy C. Paul A. Perez CNRS, LIRMM, Universit´eMontpellier 2, France † October 26, 2018 Abstract A graph G = (V, E) is a 3-leaf power iff there exists a tree T whose leaves are V and such that (u, v) ∈ E iff u and v are at distance at most 3 in T . The 3-leaf power graph edge modification problems, i.e. edition (also known as the closest 3-leaf power), completion and edge-deletion, are FTP when parameterized by the size of the edge set modification. However polynomial kernel was known for none of these three problems. For each of them, we provide cubic kernels that can be computed in linear time for each of these problems. We thereby answer an open problem first mentioned by Dom, Guo, H¨uffner and Niedermeier [6]. arXiv:0809.2858v2 [cs.DM] 17 Sep 2008 ∗Research supported by the ANR anr-blan-0148-06project ”Graph Decomposition on Algorithm (GRAAL)” †e-mail: [email protected], [email protected], [email protected] 1 Introduction An edge modification problem aims at changing the edge set of an input graph G = (V, E) in order to get a certain property Π satisfied (see [17] for a recent study). Edge modification prob- lems cover a broad range of graph optimization problems among which completion problems (e.g. minimum chordal completion), edition problems (e.g. cluster edition) and edge deletion problems (e.g. maximum planar subgraph). For completion problems, the set F of modified edges is constraint to be disjoint from E, whereas for edge deletion problems F has to be a subset of E. -
Graph Isomorphism Completeness for Chordal Bipartite Graphs and Strongly Chordal Graphs
Discrete Applied Mathematics 145 (2005) 479–482 www.elsevier.com/locate/dam Notes Graph isomorphism completeness for chordal bipartite graphs and strongly chordal graphs Ryuhei Ueharaa,1, Seinosuke Todab, Takayuki Nagoyac,∗ aNatural Science Faculty, Komazawa University, 1-23-1 Komazawa, Setagaya-Ku, Tokyo 154-8525, Japan bDepartment of Computer Science and System Analysis, College of Humanities and Sciences, Nihon University, 3-25-40 Sakurajosui, Setagaya-Ku, Tokyo 156-8550, Japan cDepartment of Mathematical Science, College of Sceince and Engineering, Tokyo Denki University, Hatoyama, Saitama 350-0394, Japan Received 6 November 2002; received in revised form 28 May 2004; accepted 19 June 2004 Abstract This paper deals with the graph isomorphism (GI) problem for two graph classes: chordal bipartite graphs and strongly chordal graphs. It is known that GI problem is GI complete even for some special graph classes including regular graphs, bipartite graphs, chordal graphs, comparability graphs, split graphs, and k-trees with unbounded k. On the other hand, the relative complexity of the GI problem for the above classes was unknown. We prove that deciding isomorphism of the classes are GI complete. © 2004 Elsevier B.V. All rights reserved. Keywords: Graph isomorphism problem; Graph isomorphism complete; Strongly chordal graphs; Chordal bipartite graphs 1. Introduction The graph isomorphism (GI) problem is a well-known problem and exploring its precise complexity has become an important open question in computational complexity theory three decades ago (see [8]). Although the problem is trivially in NP, the problem is not known to be in P and not known to be NP-complete either (see [9,11]). -
Characterization and Linear-Time Recognition of Paired Threshold Graphs
Characterization and Linear-time Recognition of Paired Threshold Graphs Guozhen Rong∗ Yixin Caoy Jianxin Wang∗ October 1, 2019 Abstract In a paired threshold graph, each vertex has a weight, and two vertices are adjacent if their weight sum is large enough and their weight difference is small enough. It generalizes threshold graphs and unit interval graphs, both very well studied. We present a vertex ordering characterization of this graph class, which enables us to prove that it is a subclass of interval graphs. Further study of clique paths of paired threshold graphs leads to a simple linear-time recognition algorithm for the class. 1 Introduction A graph is a threshold graph if one can assign positive weights to its vertices in a way that two vertices are adjacent if and only if the sum of their weights is not less than a certain threshold. Originally formulated from combinatorial optimization [1], threshold graphs found applications in many diversified areas. As one of the simplest nontrivial classes, the mathematical properties of threshold graphs have been thoroughly studied. They admit several nice characterizations, including inductive construction, degree sequences, forbidden induced subgraphs (Figure1), to name a few [13]. Relaxing these characterizations in one way or another, we end with several graph classes, e.g., cographs, split graphs, trivially perfect graphs and double-threshold graphs [14, 4, 6, 11]. Yet another closely related graph class is the difference graphs, defined solely by weight differences [8]. (a) 2K2 (b) P4 (c) C4 Figure 1: Minimal forbidden induced subgraphs for threshold graphs. Motivated by applications in social and economic interaction modeling, Ravanmehr et al.