Thrush Getting the Right Diagnosis
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Gut Microbiota Beyond Bacteria—Mycobiome, Virome, Archaeome, and Eukaryotic Parasites in IBD
International Journal of Molecular Sciences Review Gut Microbiota beyond Bacteria—Mycobiome, Virome, Archaeome, and Eukaryotic Parasites in IBD Mario Matijaši´c 1,* , Tomislav Meštrovi´c 2, Hana Cipˇci´cPaljetakˇ 1, Mihaela Peri´c 1, Anja Bareši´c 3 and Donatella Verbanac 4 1 Center for Translational and Clinical Research, University of Zagreb School of Medicine, 10000 Zagreb, Croatia; [email protected] (H.C.P.);ˇ [email protected] (M.P.) 2 University Centre Varaždin, University North, 42000 Varaždin, Croatia; [email protected] 3 Division of Electronics, Ruđer Boškovi´cInstitute, 10000 Zagreb, Croatia; [email protected] 4 Faculty of Pharmacy and Biochemistry, University of Zagreb, 10000 Zagreb, Croatia; [email protected] * Correspondence: [email protected]; Tel.: +385-01-4590-070 Received: 30 January 2020; Accepted: 7 April 2020; Published: 11 April 2020 Abstract: The human microbiota is a diverse microbial ecosystem associated with many beneficial physiological functions as well as numerous disease etiologies. Dominated by bacteria, the microbiota also includes commensal populations of fungi, viruses, archaea, and protists. Unlike bacterial microbiota, which was extensively studied in the past two decades, these non-bacterial microorganisms, their functional roles, and their interaction with one another or with host immune system have not been as widely explored. This review covers the recent findings on the non-bacterial communities of the human gastrointestinal microbiota and their involvement in health and disease, with particular focus on the pathophysiology of inflammatory bowel disease. Keywords: gut microbiota; inflammatory bowel disease (IBD); mycobiome; virome; archaeome; eukaryotic parasites 1. Introduction Trillions of microbes colonize the human body, forming the microbial community collectively referred to as the human microbiota. -
The Role of Intestinal Fungi and Its Metabolites in Chronic Liver Diseases
Gut and Liver, Vol. 14, No. 3, May 2020, pp. 291-296 Review The Role of Intestinal Fungi and Its Metabolites in Chronic Liver Diseases Ningning You1, Lili Zhuo1, Jingxin Zhou1, Yu Song2, and Junping Shi1 1Department of Liver Diseases, The Affiliated Hospital of Hangzhou Normal University, and 2Department of Liver Diseases, Zhejiang Chinese Medical University, Hangzhou, China Current studies have confirmed that liver diseases are cades have documented an important role for intestinal bacteria closely related to intestinal microorganisms; however, those in liver diseases. Growing evidences indicate that like the bac- studies have mainly concentrated on bacteria. Although the teria, the intestinal fungi are also closely associated with liver proportion of intestinal microorganisms accounted for by col- disease. onizing fungi is very small, these fungi do have a significant Intestinal fungi, as an important part of intestinal micro- effect on the homeostasis of the intestinal microecosystem. ecology, though the proportion is very low, its role in human In this paper, the characteristics of intestinal fungi in patients health and disease cannot be ignored. Under physiological con- with chronic liver diseases such as alcoholic liver disease, ditions, a variety of components on fungal cell wall (including nonalcoholic fatty liver disease and cirrhosis are summa- β-glucan, zymosan, mannan, chitosan, DNA, and RNA) can be rized, and the effects of intestinal fungi and their metabolites recognized by host cells to activate innate and acquired immu- are analyzed and discussed. It is important to realize that not nity. The reaction inhibits the overgrowth of the intestinal fungi only bacteria but also intestinal fungi play important roles in or the colonization of exogenous pathogens. -
The Gut-Lung Axis in Health and Respiratory Diseases: a Place for Inter-Organ and Inter-Kingdom Crosstalks
MINI REVIEW published: 19 February 2020 doi: 10.3389/fcimb.2020.00009 The Gut-Lung Axis in Health and Respiratory Diseases: A Place for Inter-Organ and Inter-Kingdom Crosstalks Raphaël Enaud 1,2,3*†, Renaud Prevel 2,3,4†, Eleonora Ciarlo 5, Fabien Beaufils 2,3,6, Gregoire Wieërs 7, Benoit Guery 5 and Laurence Delhaes 2,3,8 1 CHU de Bordeaux, CRCM Pédiatrique, CIC 1401, Bordeaux, France, 2 Univ. Bordeaux, Centre de Recherche Cardio-Thoracique de Bordeaux, U1045, Bordeaux, France, 3 CHU de Bordeaux, Univ. Bordeaux, FHU ACRONIM, Bordeaux, France, 4 CHU de Bordeaux, Médecine Intensive Réanimation, Bordeaux, France, 5 Infectious Diseases Service, Department of Medicine, Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland, 6 CHU de Bordeaux, Service d’Explorations Fonctionnelles Respiratoires, Bordeaux, France, 7 Clinique Saint Pierre, Department of Internal Medicine, Ottignies, Belgium, 8 CHU de Bordeaux: Laboratoire de Parasitologie-Mycologie, Univ. Bordeaux, Bordeaux, France Edited by: Yongqun Oliver He, The gut and lungs are anatomically distinct, but potential anatomic communications and University of Michigan, United States complex pathways involving their respective microbiota have reinforced the existence of a Reviewed by: Xingmin Sun, gut–lung axis (GLA). Compared to the better-studied gut microbiota, the lung microbiota, University of South Florida, only considered in recent years, represents a more discreet part of the whole microbiota United States Gyanendra Prakash Dubey, associated to human hosts. While the vast majority of studies focused on the bacterial Institut Pasteur, France component of the microbiota in healthy and pathological conditions, recent works have Hong Yu, highlighted the contribution of fungal and viral kingdoms at both digestive and respiratory Guizhou Provincial People’s Hospital, China levels. -
7 Saccharomyces Boulardii As a Probiotic for Children
PEDIATRIC PHARMACOTHERAPY A Monthly Newsletter for Health Care Professionals from the University of Virginia Children’s Hospital Volume 1 5 Number 7 July 20 09 Sa ccharomyces boulardii as a Probiotic for Children Marcia L. Buck, Pharm.D., FCCP accharomyces boulardii ( S. boulardii ) has allowing increased carbohydrate degradation and S been used as a probiotic agent since the absorption in patients with diarrhea , a nd restor es 1950s . It has been shown to be useful in the normal levels of sh ort chain fatty acids in the treatment of acute infectious diarrhea , the colon which are necessary for absorption of prevention or treatment of diarrhea associated water and electrolytes. In addition, S. boulardii with antibiotic use , and as an adjunctive therapy may reduce inflammation in the GI tract by for Helicobacter pylori infection. It has also stimulating regula to ry T ce lls and in hibit ing been suggested as a formula suppl ement for mitogen -activating protein (MAP) kinase and premature infants. 1-4 This issue of Pediatric nuclear factor -kappa B ( NF -B) signal Pharmacotherapy will describe the studies transduction pathways, resulting in decreased published to date on S. boulardii in infants and secretion of interleukin (IL -8) and tumor necrosis children and provide an overview of the adverse factor alpha (TNF ). S boulardii also decreases effects and dosing recommendations for this inducible nitric oxide synthase (NOS) activity agent in infants , children , and adults . and up -regulates proliferators -activated receptor - ga mma (PPAR -), leading to a reduction in Mechanism of Action intestinal inflammation .1-4 Probiotics are live non -pathogenic micro - organisms that are taken orally to aid in the Pharmacokinetics and Pharmacodynamics maintenance and/or restoration of healthy Daily administration of lyophilized S. -
Council of State and Territorial Epidemiologists
Appendix 1 Identification of Candida auris (as of August 20, 2018). This appendix will be updated as new information about C. auris identification becomes available. Some yeast identification methods are unable to differentiate C. auris from other yeast species. C. auris can be misidentified as a number of different organisms when using traditional biochemical methods for yeast identification such as VITEK 2 YST, API 20C, BD Phoenix yeast identification system, and MicroScan. The most common misidentification of C. auris is Candida haemulonii. C. haemulonii have been less commonly observed to cause invasive infections. Therefore, C. auris should be suspected when C. haemulonii is identified on culture of blood or other normally sterile site unless the method used can reliably detect C. auris. Candida isolates from the urine and respiratory tract ultimately confirmed as C. auris have been initially identified as C. haemulonii; less data are available about the ability of C. haemulonii to grow in urine or the respiratory tract, although true C. haemulonii infections in general appear to be rare in the United States. The table below summarizes common misidentifications based on the yeast identification method used. If any of the species listed below are identified using the specified identification method, or if species identity cannot be determined by any method, further characterization using appropriate methodology should be sought. Common misidentifications for C. auris by yeast identification method Identification Method Organism C. auris can be misidentified as No misidentifications of Candida auris. Bruker Bruker MALDI Biotyper (FDA database) MALDI-TOF is able to accurately identify C. auris bioMérieux VITEK MS (IVD/RUO database) Candida haemulonii Candida haemulonii VITEK 2 YST (Ver. -
Green and Rapid Synthesis of Anticancerous Silver Nanoparticles by Saccharomyces Boulardii and Insight Into Mechanism of Nanoparticle Synthesis
Hindawi Publishing Corporation BioMed Research International Volume 2013, Article ID 872940, 8 pages http://dx.doi.org/10.1155/2013/872940 Research Article Green and Rapid Synthesis of Anticancerous Silver Nanoparticles by Saccharomyces boulardii and Insight into Mechanism of Nanoparticle Synthesis Abhishek Kaler,1 Sanyog Jain,2 and Uttam Chand Banerjee1 1 Department of Pharmaceutical Technology (Biotechnology), National Institute of Pharmaceutical Education and Research, Sector-67, SAS Nagar, Punjab 160062, India 2 Centre for Pharmaceutical Nanotechnology, Department of Pharmaceutics, National Institute of Pharmaceutical Education and Research, Sector-67, SAS Nagar, Punjab 160062, India Correspondence should be addressed to Uttam Chand Banerjee; [email protected] Received 28 April 2013; Accepted 3 October 2013 Academic Editor: Maria Alice Zarur Coelho Copyright © 2013 Abhishek Kaler et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Rapidly developing field of nanobiotechnology dealing with metallic nanoparticle (MNP) synthesis is primarily lacking control over size, shape, dispersity, yield, and reaction time. Present work describes an ecofriendly method for the synthesis of silver nanoparticles (AgNPs) by cell free extract (CFE) of Saccharomyces boulardii. Parameters such as culture age (stationary phase ∘ growth), cell mass concentration (400 mg/mL), temperature (35 C), and reaction time (4 h), have been optimized to exercise a control over the yield of nanoparticles and their properties. Nanoparticle (NP) formation was confirmed by UV-Vis spectroscopy, elemental composition by EDX (energy dispersive X-rays) analysis, and size and shape by transmission electron microscopy. -
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Current Medical Mycology 2019, 5(4): 26-34 Species distribution and susceptibility profiles of Candida species isolated from vulvovaginal candidiasis, emergence of C. lusitaniae Seyed Ebrahim Hashemi1, Tahereh Shokohi2, 3*, Mahdi Abastabar2, 3, Narges Aslani4, Mahbobeh Ghadamzadeh5, Iman Haghani3 1 Student Research Committee, School of Medicine, Mazandaran University of Medical Sciences, Sari, Iran 2 Invasive Fungi Research Centre (IFRC), Mazandaran University of Medical Sciences, Sari, Iran 3 Department of Medical Mycology, School of Medicine, Mazandaran University of Medical Sciences, Sari, Iran 4 Infectious and Tropical Diseases Research Center, Tabriz University of Medical Sciences, Tabriz, Iran 5 Gynecology and Obstetrics Department of Hazrat-e- Zainab Hospital, Babolsar, Iran Article Info A B S T R A C T Article type: Background and Purpose: The aim of the current study was to investigate the Original article epidemiology of vulvovaginal candidiasis (VVC) and recurrent VVC (RVVC), as well as the antifungal susceptibility patterns of Candida species isolates. Materials and Methods: A cross-sectional study was carried out on 260 women suspected of VVC from February 2017 to January 2018. In order to identify Candida Article History: species isolated from the genital tracts, the isolates were subjected to polymerase chain Received: 02 August 2019 reaction restriction fragment length polymorphism (PCR-RFLP) using enzymes Msp I Revised: 20 October 2019 and sequencing. Moreover, antifungal susceptibility testing was performed according to Accepted: 10 November 2019 the Clinical and Laboratory Standards Institute guidelines (M27-A3). Results: Out of 250 subjects, 75 (28.8%) patients were affected by VVC, out of whom 15 (20%) cases had RVVC. Among the Candida species, C. -
Recovery of Saccharomyces Cerevisiae CNCM I-3856 in Vaginal Samples of Healthy Women After Oral Administration
nutrients Article Recovery of Saccharomyces cerevisiae CNCM I-3856 in Vaginal Samples of Healthy Women after Oral Administration Amelie Decherf 1,* , Elodie Dehay 1, Mickaël Boyer 2, Mathieu Clément-Ziza 3, Bertrand Rodriguez 1 and Sophie Legrain-Raspaud 1 1 Research and Applications Department, Gnosis by Lesaffre, Lesaffre Group, 59700 Marcq-en-Baroeul, France; [email protected]ffre.com (E.D.); [email protected]ffre.com (B.R.); [email protected]ffre.com (S.L.-R.) 2 Microbiology Laboratory, Research and Development Department, Lesaffre International, Lesaffre Group, 59700 Marcq-en-Baroeul, France; m.boyer@lesaffre.com 3 Data Science and Bioinformatics Laboratory, Research and Development Department, Lesaffre International, Lesaffre Group, 59700 Marcq-en-Baroeul, France; m.clementziza@lesaffre.com * Correspondence: [email protected]ffre.com; Tel.: +33-(3)20-14-83-20 Received: 9 June 2020; Accepted: 20 July 2020; Published: 24 July 2020 Abstract: Bacterial vaginosis and vulvovaginal candidiasis are common causes of impaired health and quality of life for women. Although antimicrobial agents remain the main strategy for the treatment of vaginal infections, their repeated use involves high rates of resistance and recurrence. Alternative approaches such as probiotics are studied. Saccharomyces cerevisiae CNCM I-3856 already demonstrated beneficial effects in experimental models of vaginal infections. This randomized, double-blind, placebo-controlled clinical study was performed to evaluate the recovery of S. cerevisiae CNCM I-3856 in vaginal samples in healthy women after oral consumption. Sixty healthy women were randomized to receive a daily dose of S. cerevisiae CNCM I-3856 or a placebo for 4 weeks. Subcultures and quantitative polymerase chain reaction (qPCR) were used to detect the strain in vaginal and stool samples. -
C. Auris Reporting Guidance
To: Healthcare Providers and Laboratorians From: Iowa Department of Public Health, Center for Acute Disease Epidemiology Re: Candida auris infection or Colonization in Iowa Residents as temporarily Reportable Date: December 4, 2020 Background: Candida auris is an emerging fungus that presents a serious global health threat. The CDC recommends that all Candida isolates obtained from normal sterile sites (e.g., bloodstream, cerebrospinal fluid) be identified to the species level as initial treatment can be administered based on the typical, species-specific susceptibility patterns. C. auris in a non-sterile body site is also very important to identify because the identification can represent wider colonization, which poses a risk for transmission and infection control precautions. If a laboratory identifies any Candida species from any site, submission of the isolate is warranted. Surveillance: All laboratories are to submit isolates from any site that include the following species: 1. Candida auris 2. Candida famata 3. Candida haemulonii 4. Candida sake 5. Rhodotorula glutinis 6. Saccharomyces cerevisiae 7. Candida spp. (isolates where the species is attempted and results are inconclusive). Algorithm to identify C. auris: The Centers for Disease Control and Prevention (CDC) provides an algorithm to identify C. auris based on phenotypic laboratory and initial species identification. The algorithm can be accessed at the following hyperlink: https://www.cdc.gov/fungal/diseases/candidiasis/pdf/Testing-algorithm-by-Method-temp.pdf. Specimen Submission: C. auris can be misidentified as a number of different organisms when using traditional phenotypic methods for yeast identification such as VITEK 2 YST, API 20C, BD Phoenix yeast identification system, and MicroScan. -
Hospital Laboratory Survey for Identification of Candida Auris In
Journal of Fungi Article Hospital Laboratory Survey for Identification of Candida auris in Belgium Klaas Dewaele 1 , Katrien Lagrou 2,3, Johan Frans 1, Marie-Pierre Hayette 4 and Kris Vernelen 5,* 1 Department of Clinical Microbiology, Imelda General Hospital, 2820 Bonheiden, Belgium 2 Department of Laboratory Medicine and National Reference Centre for Mycosis, University Hospitals of Leuven, 3000 Leuven, Belgium 3 Department of Microbiology, Immunology and Transplantation, KU Leuven, 3000 Leuven, Belgium 4 Department of Clinical Microbiology and National Reference Center for Mycosis, University Hospital of Liège, 4000 Liège, Belgium 5 Quality of Laboratories, Sciensano, 1050 Brussels, Belgium * Correspondence: [email protected] Received: 4 August 2019; Accepted: 27 August 2019; Published: 5 September 2019 Abstract: Candida auris is a difficult-to-identify, emerging yeast and a cause of sustained nosocomial outbreaks. Presently, not much data exist on laboratory preparedness in Europe. To assess the ability of laboratories in Belgium and Luxembourg to detect this species, a blinded C. auris strain was included in the regular proficiency testing rounds organized by the Belgian public health institute, Sciensano. Laboratories were asked to identify and report the isolate as they would in routine clinical practice, as if grown from a blood culture. Of 142 respondents, 82 (57.7%) obtained a correct identification of C. auris. Of 142 respondents, 27 (19.0%) identified the strain as Candida haemulonii. The remaining labs that did not obtain a correct identification (33/142, 23.2%), reported other yeast species (4/33) or failed to obtain a species identification (29/33). To assess awareness about the infection-control implications of the identification, participants were requested to indicate whether referral of this isolate to a reference laboratory was desirable in a clinical context. -
Vaginal Colonization and Vulvovaginitis by Candida Species in Pregnant Women from Northern of Colombia
Archivos de Medicina (Col) ISSN: 1657-320X [email protected] Universidad de Manizales Colombia Vaginal colonization and vulvovaginitis by Candida species in pregnant women from Northern of Colombia Suárez, Paola; Belloz, Ana; Puelloz, Martha; Youngz, Gregorio; Duranz, Marlene; Arechavala, Alicia Vaginal colonization and vulvovaginitis by Candida species in pregnant women from Northern of Colombia Archivos de Medicina (Col), vol. 18, no. 1, 2018 Universidad de Manizales, Colombia Available in: https://www.redalyc.org/articulo.oa?id=273856494005 DOI: https://doi.org/10.30554/archmed.18.1.2010.2018 PDF generated from XML JATS4R by Redalyc Project academic non-profit, developed under the open access initiative Artículos de Investigación Vaginal colonization and vulvovaginitis by Candida species in pregnant women from Northern of Colombia Vulvovaginitis y colonización vaginal por especies de Candida en gestantes del norte de Colombia Resumen Paola Suárez [email protected] Cartagena University, Colombia Ana Belloz [email protected] Cartagena University., Colombia Martha Puelloz [email protected] Cartagena University., Colombia Gregorio Youngz [email protected] Cartagena University., Colombia Marlene Duranz [email protected] Cartagena University., Colombia Archivos de Medicina (Col), vol. 18, no. 1, 2018 Alicia Arechavala [email protected] Universidad de Manizales, Colombia Hospital de Infecciosas Muñiz, Buenos Aires, Argentina., Argentina Received: 10 June 2018 Corrected: 12 March 2018 Accepted: 12 April 2018 DOI: https://doi.org/10.30554/ Abstract: Objective: identify the vaginal colonizing Candida species and VVC species, archmed.18.1.2010.2018 predisposing factors and susceptibility against fluconazole in pregnant women attending Redalyc: https://www.redalyc.org/ gynecological outpatient of a maternal clinic in Cartagena (Colombia). -
A Neglected Component in the Microbiota-Gut-Brain Axis
microorganisms Review The Mycobiome: A Neglected Component in the Microbiota-Gut-Brain Axis Raphaël Enaud 1,2,3,*, Louise-Eva Vandenborght 1,3,4, Noémie Coron 1,2,3, Thomas Bazin 1,2, Renaud Prevel 1, Thierry Schaeverbeke 1,2, Patrick Berger 1,2,3, Michael Fayon 1,2,3, Thierry Lamireau 1,2 ID and Laurence Delhaes 1,2,3 1 Centre de Recherche Cardio-Thoracique de Bordeaux, U1045, FHU ACRONIM, University Bordeaux, 33000 Bordeaux, France; [email protected] (L.-E.V.); [email protected] (N.C.); [email protected] (T.B.); [email protected] (R.P.); [email protected] (T.S.); [email protected] (P.B.); [email protected] (M.F.); [email protected] (T.L.); [email protected] (L.D.) 2 Service d’Exploration Fonctionnelle Respiratoire, Service de Rhumatologie, Service de Gastrologie Adulte, Laboratoire de Parasitologie-Mycologie, CRCM Pédiatrique, Gastroentérologie et Nutrition Pédiatriques, Unité d’Hépatologie, CHU Bordeaux, 33000 Bordeaux, France 3 INSERM, Centre de Recherche Cardio-Thoracique de Bordeaux, U1045, 33000 Bordeaux, France 4 Genoscreen Society, 59000 Lille, France * Correspondence: [email protected] Received: 5 February 2018; Accepted: 5 March 2018; Published: 9 March 2018 Abstract: In recent years, the gut microbiota has been considered as a full-fledged actor of the gut–brain axis, making it possible to take a new step in understanding the pathophysiology of both neurological and psychiatric diseases. However, most of the studies have been devoted to gut bacterial microbiota, forgetting the non-negligible fungal flora.