Junctophilin-4, a Component of the Endoplasmic Reticulum–Plasma Membrane Junctions, Regulates + Ca2 Dynamics in T Cells

Total Page:16

File Type:pdf, Size:1020Kb

Junctophilin-4, a Component of the Endoplasmic Reticulum–Plasma Membrane Junctions, Regulates + Ca2 Dynamics in T Cells Junctophilin-4, a component of the endoplasmic reticulum–plasma membrane junctions, regulates + Ca2 dynamics in T cells Jin Seok Wooa,1, Sonal Srikantha,1, Miyuki Nishib, Peipei Pinga, Hiroshi Takeshimab, and Yousang Gwacka,2 aDepartment of Physiology, David Geffen School of Medicine at the University of California, Los Angeles, Los Angeles, CA 90095; and bGraduate School of Pharmaceutical Sciences, Kyoto University, Kyoto 606-8501, Japan Edited by Arthur Weiss, University of California, San Francisco, CA, and approved February 2, 2016 (received for review December 9, 2015) Orai1 and stromal interaction molecule 1 (STIM1) mediate store-oper- E-Syt proteins were shown to be important for PIP2 replenishment ated Ca2+ entry (SOCE) in immune cells. STIM1, an endoplasmic re- after store depletion (17). The importance of protein interaction in ticulum (ER) Ca2+ sensor, detects store depletion and interacts with STIM1 recruitment was demonstrated by a STIM1ΔKmutant plasma membrane (PM)-resident Orai1 channels at the ER–PM junc- truncated in its C-terminal polybasic domain. Interaction with tions. However, the molecular composition of these junctions in T cells Orai1 or junctate facilitated recruitment of this PIP2 binding- remains poorly understood. Here, we show that junctophilin-4 (JP4), a deficient mutant into the junctions (15, 18, 19). It was thought that member of junctional proteins in excitable cells, is expressed in T cells the roles of dyad/triad junctional proteins are limited to muscle + and localized at the ER–PM junctions to regulate Ca2 signaling. Silenc- cells. However, identification of junctate as a STIM1-interacting + – ing or genetic manipulation of JP4 decreased ER Ca2 content and partner implied that some components (or homologs) of ER PM SOCE in T cells, impaired activation of the nuclear factor of activated junctions in excitable cells may be shared in immune cells. T cells (NFAT) and extracellular signaling-related kinase (ERK) signaling The junctophilin family consists of four genes (JP1, JP2, JP3, and JP4) that are expressed in a tissue-specific manner and are pathways, and diminished expression of activation markers and cyto- – kines. Mechanistically, JP4 directly interacted with STIM1 via its cyto- known to form ER PM junctions in excitable cells (20, 21). plasmic domain and facilitated its recruitment into the junctions. Junctophilins contain eight repeats of the membrane occupation Accordingly, expression of this cytoplasmic fragment of JP4 inhibited and recognition nexus (MORN) motifs that bind to phospho- lipids in the N terminus and a C-terminal ER membrane-span- SOCE. Furthermore, JP4 also formed a complex with junctate, a + ning transmembrane segment (20, 22). In this study, we observed Ca2 -sensing ER-resident protein, previously shown to mediate STIM1 expression of JP4 in both human and mouse T cells, which was recruitment into the junctions. We propose that the junctate–JP4 com- further enhanced by TCR stimulation. Depletion or deficiency plex located at the junctions cooperatively interacts with STIM1 to 2+ 2+ of JP4 reduced ER Ca content, SOCE, and activation of the maintain ER Ca homeostasis and mediate SOCE in T cells. nuclear factor of activated T cells (NFAT) and ERK mitogen- activated protein kinase (MAPK) pathways. Mechanistically, JP4 – 2+ junctophilins | ER PM junctions | store-operated Ca entry | STIM1 | Orai1 depletion reduced accumulation of STIM1 at the junctions without affecting the number and length of the ER–PM junctions. We ob- he endoplasmic reticulum (ER)–plasma membrane (PM) served a direct interaction between the cytoplasmic regions of JP4 Tjunctions are ubiquitous structures essential for intermembrane and STIM1, and, correspondingly, overexpression of the STIM1- communications (1–3). These junctions play an important role in interacting JP4 fragment had a dominant negative effect on SOCE. + + lipid transfer and regulation of Ca2 dynamics, including ER Ca2 Finally, we identified a protein complex consisting of JP4 and + homeostasis and Ca2 entry after receptor stimulation (1, 4). junctate at the ER–PM junctions, which may have a synergistic Four major categories of components of the ER–PM junctions have been identified so far: (i) dyad/triad junctional proteins in Significance the heart and skeletal muscle (e.g., junctophilins and junctin), (ii) ER-resident vesicle-associated membrane protein-associated pro- Distinct membranes separate cellular organelles, and communication teins (VAPs) that form the lipid transfer machinery by interacting between organelles occurs primarily at the interorganelle mem- with phospholipid-binding proteins, (iii) extended synaptogamin- brane junctions, which are established by junctional proteins. The like proteins (E-Syts) that tether membranes, and (iv)theOrai1– junctions between the endoplasmic reticulum (ER) and the plasma + stromal interaction molecule 1 (STIM1) complex that forms the membrane (PM) are essential for lipid transfer and Ca2 dynamics; + + + primary Ca2 channel in T cells, the Ca2 release-activated Ca2 however, little is known about the composition of these junctions in (CRAC) channels. Among these proteins, the dyad/triad junctional T cells. We identified a protein complex containing junctophilin-4 proteins and the Orai1–STIM1 complex are known to play a crucial and junctate as components of the ER–PM junctions that regulate + + role in Ca2 dynamics, including excitation–contraction coupling Ca2 dynamics in T cells by interacting with stromal interaction + + in muscle and store-operated Ca2 entry (SOCE) in immune molecule 1 (STIM1), an essential activator of store-operated Ca2 cells, respectively (2, 5). channels. This study highlights an important role of junctional pro- Stimulation of T-cell receptors (TCRs) triggers activation of teins in T cells and helps in uncovering the pathological mechanisms SOCE primarily mediated by the PM-resident Orai1 channels underlying human diseases due to mutations in these proteins. + and ER-resident STIM1 protein that senses ER Ca2 concen- tration (6–11). Upon store depletion, STIM1 translocates and Author contributions: J.S.W., S.S., and Y.G. designed research; J.S.W. and S.S. performed interacts with Orai1 at the preformed ER–PM junctions (12, 13). research; J.S.W., S.S., M.N., P.P., H.T., and Y.G. contributed new reagents/analytic tools; STIM1 uses two major mechanisms to translocate into the ER– J.S.W., S.S., and Y.G. analyzed data; and S.S. and Y.G. wrote the paper. PM junctions: by interactions with phosphatidylinositol-4,5- The authors declare no conflict of interest. This article is a PNAS Direct Submission. bisphosphate (PIP2) in the PM via its C-terminal polybasic res- idues and by interaction with Orai1 or the ER-resident junctate 1J.S.W. and S.S. contributed equally to this work. proteins (14, 15). Recently, septin filaments were shown to play a 2To whom correspondence should be addressed. Email: [email protected]. – role in PIP2 enrichment at the ER PM junctions before STIM1 This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10. recruitment (16). Subsequently, membrane-tethering VAP and 1073/pnas.1524229113/-/DCSupplemental. 2762–2767 | PNAS | March 8, 2016 | vol. 113 | no. 10 www.pnas.org/cgi/doi/10.1073/pnas.1524229113 Downloaded by guest on September 27, 2021 + effect in recruiting STIM1 to the junctions. Therefore, our of the sarcoplasmic/endoplasmic reticulum Ca2 ATPase (SERCA) studies identify a PIP -independent, but protein interaction- pump or active depletion using anti-CD3 antibody cross-linking 2 + mediated, mechanism by which the junctate–JP4 complex re- (Fig. 1C). Interestingly, ER Ca2 content was also reduced in + cruits STIM1 into the ER–PM junctions to maintain ER Ca2 thapsigargin-treated JP4-depleted cells. We confirmed this obser- vation using a strong ionophore, ionomycin, to ensure complete homeostasis and activate SOCE in T cells. + depletion of the ER Ca2 stores (Fig. 1D). The specific role of JP4 + Results in ER Ca2 content and SOCE reduction was validated by rescue JP4 Plays an Important Role in ER Ca2+ Homeostasis and SOCE in T of these phenotypes in JP4-depleted cells expressing siRNA- – resistant cDNA (Fig. 1E). Together, these results suggested an Cells. To identify components of the ER PM junctions in T cells, 2+ we examined transcript expression of various molecules, including important role of JP4 in ER Ca homeostasis and SOCE in T cells. junctional proteins in excitable cells (calumin, MG29, and JP1 to -4), 2+ proteins involved in lipid modification and transfer (VAP-A, -B, JP4 Deficiency Affects ER Ca Homeostasis, SOCE, and Cytokine and -C and TMEM16A and -B), and membrane-tethering pro- Production in Primary T Cells. Next, we examined the physiologi- teins (E-Syt1, E-Syt2, and E-Syt3) in resting and stimulated Jurkat cal role of JP4 in T cells isolated from JP4 knockout mice (23). As expected, JP4 expression was abrogated in JP4 knockout cells, a leukemic T-cell line. Among these candidates, mRNA ex- + primary naive CD4 T cells (Fig. 2A). Furthermore, we observed pression of JP4 was induced by stimulation in both Jurkat and a significant reduction in SOCE in JP4-deficent naive T cells murine primary T cells (Fig. 1A and Fig. S1A). Increased mRNA after passive store depletion or TCR cross-linking (Fig. 2 B and expression of JP3 was also observed, but only in Jurkat cells. Con- C). Consistent with Jurkat cells, JP4 knockout primary T cells sistent with these mRNA analyses, expression of JP4 protein in 2+ B B also showed a significant reduction in ER Ca content (Fig. 2 ). Jurkat cells was induced after stimulation (Fig. S1 ). JP4 is the least In addition, JP4-deficient effector T cells differentiated under understood member of the junctophilin family and, together with nonpolarizing conditions also showed diminished SOCE after JP3, is known to play an important role in neurons. Although JP1 TCR cross-linking (Fig. 2D). These results confirm an important + and JP2 have specific roles in skeletal and cardiac muscle cells, role of JP4 in ER Ca2 homeostasis and SOCE.
Recommended publications
  • ORAI1 and ORAI2 Modulate Murine Neutrophil Calcium Signaling, Cellular Activation, and Host Defense
    ORAI1 and ORAI2 modulate murine neutrophil calcium signaling, cellular activation, and host defense Derayvia Grimesa,1, Ryan Johnsona,1, Madeline Pashosa, Celeste Cummingsa, Chen Kangb, Georgia R. Sampedroa, Eric Tycksenc, Helen J. McBrided, Rajan Sahb, Clifford A. Lowelle, and Regina A. Clemensa,2 aDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO 63110; bDepartment of Internal Medicine, Washington University School of Medicine, St. Louis, MO 63110; cMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO 63110; dInflammation Research, Amgen, Thousand Oaks, CA 91320; and eDepartment of Laboratory Medicine, University of California, San Francisco, CA 94143 Edited by Michael D. Cahalan, University of California, Irvine, CA, and approved August 11, 2020 (received for review May 5, 2020) Calcium signals are initiated in immune cells by the process of in isoform features, such as activation or inactivation kinetics and store-operated calcium entry (SOCE), where receptor activation sensitivity to modulatory factors, also influence CRAC-channel triggers transient calcium release from the endoplasmic reticulum, function (2–10). ORAI1 and ORAI2 are broadly expressed in im- followed by opening of plasma-membrane calcium-release acti- mune cells, and humans with ORAI1 mutations develop a severe vated calcium (CRAC) channels. ORAI1, ORAI2, and ORAI3 are known combined immunodeficiency-like immunodeficiency, highlighting to comprise the CRAC channel; however, the contributions of indi- the importance of this isoform in immune function (11, 12). In mice, vidual isoforms to neutrophil function are not well understood. ORAI1 also appears to be the dominant functional isoform in im- Here, we show that loss of ORAI1 partially decreases calcium influx, mune cells, with substantial deficits in ORAI1-deficient T cells, while loss of both ORAI1 and ORAI2 completely abolishes SOCE.
    [Show full text]
  • Na+ Influx Via Orai1 Inhibits Intracellular ATP-Induced Mtorc2 Signaling to Disrupt CD4 T Cell Gene Expression and Differentiation." Elife.6
    Washington University School of Medicine Digital Commons@Becker Open Access Publications 2017 Na+ influx via Orai1 inhibits intracellular ATP- induced mTORC2 signaling to disrupt CD4 T cell gene expression and differentiation Yong Miao Washington University School of Medicine in St. Louis Jaya Bhushan Washington University School of Medicine in St. Louis Adish Dani Washington University School of Medicine in St. Louis Monika Vig Washington University School of Medicine in St. Louis Follow this and additional works at: https://digitalcommons.wustl.edu/open_access_pubs Recommended Citation Miao, Yong; Bhushan, Jaya; Dani, Adish; and Vig, Monika, ,"Na+ influx via Orai1 inhibits intracellular ATP-induced mTORC2 signaling to disrupt CD4 T cell gene expression and differentiation." Elife.6,. e25155. (2017). https://digitalcommons.wustl.edu/open_access_pubs/6064 This Open Access Publication is brought to you for free and open access by Digital Commons@Becker. It has been accepted for inclusion in Open Access Publications by an authorized administrator of Digital Commons@Becker. For more information, please contact [email protected]. RESEARCH ARTICLE Na+ influx via Orai1 inhibits intracellular ATP-induced mTORC2 signaling to disrupt CD4 T cell gene expression and differentiation Yong Miao1, Jaya Bhushan1, Adish Dani1,2, Monika Vig1* 1Department of Pathology and Immunology, Washington University School of Medicine, St Louis, United States; 2Hope Center for Neurological Disorders, Washington University School of Medicine, St Louis, United States Abstract T cell effector functions require sustained calcium influx. However, the signaling and phenotypic consequences of non-specific sodium permeation via calcium channels remain unknown. a-SNAP is a crucial component of Orai1 channels, and its depletion disrupts the functional assembly of Orai1 multimers.
    [Show full text]
  • A Sulfur-Aromatic Gate Latch Is Essential for Opening of the Orai1 Channel Pore
    RESEARCH ARTICLE A sulfur-aromatic gate latch is essential for opening of the Orai1 channel pore Priscilla S-W Yeung1†, Christopher E Ing2,3†, Megumi Yamashita1, Re´ gis Pome` s2,3, Murali Prakriya1* 1Department of Pharmacology, Northwestern University, Feinberg School of Medicine, Chicago, United States; 2Molecular Medicine, Hospital for Sick Children, Toronto, Canada; 3Department of Biochemistry, University of Toronto, Toronto, Canada Abstract Sulfur-aromatic interactions occur in the majority of protein structures, yet little is known about their functional roles in ion channels. Here, we describe a novel molecular motif, the M101 gate latch, which is essential for gating of human Orai1 channels via its sulfur-aromatic interactions with the F99 hydrophobic gate. Molecular dynamics simulations of different Orai variants reveal that the gate latch is mostly engaged in open but not closed channels. In experimental studies, we use metal-ion bridges to show that promoting an M101-F99 bond directly activates Orai1, whereas disrupting this interaction triggers channel closure. Mutational analysis demonstrates that the methionine residue at this position has a unique combination of length, flexibility, and chemistry to act as an effective latch for the phenylalanine gate. Because sulfur- aromatic interactions provide additional stabilization compared to purely hydrophobic interactions, we infer that the six M101-F99 pairs in the hexameric channel provide a substantial energetic contribution to Orai1 activation. *For correspondence: [email protected] Introduction †These authors contributed The opening and closing of ion channels constitute an important means by which extracellular signals equally to this work are translated into the activation of specific intracellular signaling cascades.
    [Show full text]
  • Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
    Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase
    [Show full text]
  • Blockage of Store-Operated Ca2+ Influx by Synta66 Is Mediated by Direct Inhibition of the Ca2+ Selective Orai1 Pore
    cancers Article Blockage of Store-Operated Ca2+ Influx by Synta66 is Mediated by Direct Inhibition of the Ca2+ Selective Orai1 Pore Linda Waldherr 1 , Adela Tiffner 2 , Deepti Mishra 3, Matthias Sallinger 2, Romana Schober 1,2, Irene Frischauf 2 , Tony Schmidt 1 , Verena Handl 4, Peter Sagmeister 5, Manuel Köckinger 5 , Isabella Derler 2, Muammer Üçal 4 , Daniel Bonhenry 3,*, Silke Patz 4,* and Rainer Schindl 1,2,* 1 Gottfried Schatz Research Centre, Medical University of Graz, A-8010 Graz, Austria; [email protected] (L.W.); [email protected] (R.S.); [email protected] (T.S.) 2 Institute of Biophysics, JKU Life Science Centre, Johannes Kepler University Linz, A-4020 Linz, Austria; adela.tiff[email protected] (A.T.); [email protected] (M.S.); [email protected] (I.F.); [email protected] (I.D.) 3 Centre for Nanobiology and Structural Biology, Academy of Sciences of the Czech Republic, 373 33 Nové Hrady, Czech Republic; [email protected] 4 Department of Neurosurgery, Medical University of Graz, A-8010 Graz, Austria; [email protected] (V.H.); [email protected] (M.Ü.) 5 Institute of Chemistry, University of Graz, Heinrichstraße 28, A-8010 Graz, Austria; [email protected] (P.S.); [email protected] (M.K.) * Correspondence: [email protected] (D.B.); [email protected] (S.P.); [email protected] (R.S.) Received: 3 August 2020; Accepted: 30 September 2020; Published: 6 October 2020 Simple Summary: Store-operated calcium channels constituted from the proteins Orai and STIM are important targets for development of new drugs, especially for the treatment of auto-immune diseases.
    [Show full text]
  • Cardiomyocyte-Specific Deletion of Orai1 Reveals Its Protective Role in Angiotensin-II-Induced Pathological Cardiac Remodeling
    cells Article Cardiomyocyte-Specific Deletion of Orai1 Reveals Its Protective Role in Angiotensin-II-Induced Pathological Cardiac Remodeling Sebastian Segin 1,2, Michael Berlin 1,2, Christin Richter 1, Rebekka Medert 1,2, Veit Flockerzi 3, Paul Worley 4, Marc Freichel 1,2 and Juan E. Camacho Londoño 1,2,* 1 Pharmakologisches Institut, Ruprecht-Karls-Universität Heidelberg, INF 366, 69120 Heidelberg, Germany; [email protected] (S.S.); [email protected] (M.B.); [email protected] (C.R.); [email protected] (R.M.); [email protected] (M.F.) 2 DZHK (German Centre for Cardiovascular Research), Partner Site Heidelberg/Mannheim, 69120 Heidelberg, Germany 3 Experimentelle und Klinische Pharmakologie und Toxikologie, Universität des Saarlandes, 66421 Homburg, Germany; [email protected] 4 The Solomon H. Snyder Department of Neuroscience, Johns Hopkins University, School of Medicine, Baltimore, MD 21205, USA; [email protected] * Correspondence: [email protected]; Tel.: +49-6221-54-86863; Fax: +49-6221-54-8644 Received: 26 March 2020; Accepted: 24 April 2020; Published: 28 April 2020 Abstract: Pathological cardiac remodeling correlates with chronic neurohumoral stimulation and abnormal Ca2+ signaling in cardiomyocytes. Store-operated calcium entry (SOCE) has been described in adult and neonatal murine cardiomyocytes, and Orai1 proteins act as crucial ion-conducting constituents of this calcium entry pathway that can be engaged not only by passive Ca2+ store depletion but also by neurohumoral stimuli such as angiotensin-II. In this study, we, therefore, analyzed the consequences of Orai1 deletion for cardiomyocyte hypertrophy in neonatal and adult cardiomyocytes as well as for other features of pathological cardiac remodeling including cardiac contractile function in vivo.
    [Show full text]
  • Anti-ORAI1 / CRACM1 Antibody (ARG56840)
    Product datasheet [email protected] ARG56840 Package: 50 μg anti-ORAI1 / CRACM1 antibody Store at: -20°C Summary Product Description Rabbit Polyclonal antibody recognizes ORAI1 / CRACM1 Tested Reactivity Hu Predict Reactivity Ms Tested Application ICC/IF, IHC-P, WB Specificity This antibody is predicted to have no cross-reactivity to ORAI2 or ORAI3. Host Rabbit Clonality Polyclonal Isotype IgG Target Name ORAI1 / CRACM1 Antigen Species Human Immunogen Synthetic peptide (18 aa) within the first 50 aa of Human ORAI1 / CRACM1. Conjugation Un-conjugated Alternate Names Protein orai-1; CRACM1; Transmembrane protein 142A; IMD9; ORAT1; Calcium release-activated calcium channel protein 1; TAM2; TMEM142A Application Instructions Application table Application Dilution ICC/IF 20 µg/ml IHC-P 10 µg/ml WB 1 µg/ml Application Note * The dilutions indicate recommended starting dilutions and the optimal dilutions or concentrations should be determined by the scientist. Positive Control Human ovary tissue lysate Calculated Mw 33 kDa Properties Form Liquid Purification Affinity purification with immunogen. Buffer PBS and 0.02% Sodium azide. Preservative 0.02% Sodium azide Concentration 1 mg/ml www.arigobio.com 1/3 Storage instruction For continuous use, store undiluted antibody at 2-8°C for up to a week. For long-term storage, aliquot and store at -20°C or below. Storage in frost free freezers is not recommended. Avoid repeated freeze/thaw cycles. Suggest spin the vial prior to opening. The antibody solution should be gently mixed before use. Note For laboratory research only, not for drug, diagnostic or other use. Bioinformation Database links GeneID: 84876 Human Swiss-port # Q96D31 Human Gene Symbol ORAI1 Gene Full Name ORAI calcium release-activated calcium modulator 1 Background The protein encoded by this gene is a membrane calcium channel subunit that is activated by the calcium sensor STIM1 when calcium stores are depleted.
    [Show full text]
  • Evolutionary Context Can Clarify Teleosts Gene Names
    bioRxiv preprint doi: https://doi.org/10.1101/2020.02.02.931493; this version posted February 6, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Evolutionary context can clarify teleosts gene names Gasanov E.V.*, Jędrychowska J.*, Kuźnicki J., Korzh V. International Institute of Molecular and Cell Biology in Warsaw, Poland *equal contribution Corresponding author: Vladimir Korzh Email: [email protected] Phone: +48 22 597 0765 Fax: +48 22 597 0715 bioRxiv preprint doi: https://doi.org/10.1101/2020.02.02.931493; this version posted February 6, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Nothing in Biology Makes Sense Except in the Light of Evolution Theodosius Dobzhansky, 1973 Summary The initial convention to name genes relied on historical precedent, order in the human genome or mutants in model systems. However, partial duplication of genes in teleosts required naming the duplicated genes, so ohnologs adopted the 'a' or 'b' extension. Rapid advances in deciphering the zebrafish genome in relation to the human genome instituted naming genes in all other fish genomes in the convention of zebrafish. Unfortunately, some ohnologs and their resembling orthologs suffered from incorrect nomenclature, which created confusion in particular instances like establishing disease models.
    [Show full text]
  • Mapping the Functional Anatomy of Orai1 Transmembrane Domains for CRAC Channel Gating
    Mapping the functional anatomy of Orai1 transmembrane domains for CRAC channel gating Priscilla S.-W. Yeunga, Megumi Yamashitaa, Christopher E. Ingb,c, Régis Pomèsb,c, Douglas M. Freymannd, and Murali Prakriyaa,1 aDepartment of Pharmacology, Northwestern University Feinberg School of Medicine, Chicago, IL 60611; bMolecular Medicine, The Hospital for Sick Children Research Institute, Toronto, ON, Canada M5G 0A4; cDepartment of Biochemistry, University of Toronto, Toronto, ON, Canada M5S 1A8; and dDepartment of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, IL 60611 Edited by Michael D. Cahalan, University of California, Irvine, CA, and approved April 17, 2018 (received for review October 23, 2017) Store-operated Orai1 channels are activated through a unique contains four transmembrane helices (TMs) arranged in concen- inside-out mechanism involving binding of the endoplasmic re- tric layers, with the centrally located TM1 helices lining the pore, + ticulum Ca2 sensor STIM1 to cytoplasmic sites on Orai1. Although TM2 and TM3 in the next layer, and TM4 forming the most ex- atomic-level details of Orai structure, including the pore and puta- ternal, lipid-exposed segment (7). Recent studies indicated that tive ligand binding domains, are resolved, how the gating signal is the channel gate is formed, at least in part, by the combination of communicated to the pore and opens the gate is unknown. To ad- two hydrophobic pore residues, F99 and V102, which regulate the dress this issue, we used scanning mutagenesis to identify 15 resi- closed–open transition (8–11). STIM1 binding is proposed to open – dues in transmembrane domains (TMs) 1 4 whose perturbation this gate by inducing a modest rotation of the pore helix to move activates Orai1 channels independently of STIM1.
    [Show full text]
  • Potassium Channel Modulators for the Treatment of Autoimmune Disorders
    Potassium channel modulators for the treatment of autoimmune disorders 1 Autoimmune disorders . During normal immune responses white blood cells protect the body from antigens such as bacteria, viruses, toxins, cancer cells • The cellular immune system attacks infected cells with CD4 (helper) and CD8 (cytotoxic) T cells • The humoral system responds to bacteria and viruses by instigating attack by immunoglobulins produced by B cells . In patients with an autoimmune disorder the immune system cannot distinguish between foreign antigens and healthy tissue, resulting in destruction of tissue or abnormal growth patterns . Many different organ or tissue types may be affected • Blood vessels, connective tissue, nerves, joints, muscles, skin . More than 80 discrete autoimmune disorders have been identified . The aggregate prevalence of AI disorders is ~5000 per 100,000 • Incidence is higher in women than men . Different AI disorders have different molecular phenotypes 2 Autoimmune phenotypes Effector memory T cells and class switched B cells predominate Disease Target organ Autoreactive lymphocyte Psoriasis Skin CD45RO+CD45RA- CCR7- TEM cells Grave disease Thyroid IgD-IgG+ memory B cells Rheumatoid arthritis Joints CD28nullCD45RA-CCR7- TEM cells CD45RA- memory T cells Hashimoto disease Thyroid IgD-IgG+ memory B cells Vitiligo Skin, mucous membranes CD45RO+ memory T cells Crohns disease Digestive tract CD45RO+CD28null memory T cells Type I diabetes CD28 costimulation-independent memory T- Pancreas mellitus cells CD28 costimulation-independent Multiple sclerosis CNS CD45RO+CD45RA-CCR7- TEM cells IgD-CD27+ class-switched memory B cells 3 Prevalence of AI disorders 1600 1400 1200 1000 800 Prevalence of Autoimmune Diseases 600 400 200 (cases/100,000) 0 Psoriasis Grave disease Rheumatoid arthritis Hashimoto's disease Vitiligo IBD Type I diabetes (adults) Pernicious anemia Glomerulonephritis Multiple sclerosis System lupus erythematosis Primary systemic vasculitis Addison Disease .
    [Show full text]
  • ORAI1 Antibody (C-Term) Affinity Purified Rabbit Polyclonal Antibody (Pab) Catalog # AP14588B
    10320 Camino Santa Fe, Suite G San Diego, CA 92121 Tel: 858.875.1900 Fax: 858.622.0609 ORAI1 Antibody (C-term) Affinity Purified Rabbit Polyclonal Antibody (Pab) Catalog # AP14588B Specification ORAI1 Antibody (C-term) - Product Information Application WB,E Primary Accession Q96D31 Other Accession NP_116179.2 Reactivity Human Host Rabbit Clonality Polyclonal Isotype Rabbit Ig Calculated MW 32668 Antigen Region 269-298 ORAI1 Antibody (C-term) - Additional Information Gene ID 84876 Other Names Calcium release-activated calcium channel Anti-ORAI1 Antibody (C-term) at 1:1000 protein 1, Protein orai-1, Transmembrane dilution + A549 whole cell lysate protein 142A, ORAI1, CRACM1, TMEM142A Lysates/proteins at 20 µg per lane. Secondary Goat Anti-Rabbit IgG, (H+L), Target/Specificity Peroxidase conjugated at 1/10000 dilution. This ORAI1 antibody is generated from Predicted band size : 33 kDa rabbits immunized with a KLH conjugated Blocking/Dilution buffer: 5% NFDM/TBST. synthetic peptide between 269-298 amino acids from the C-terminal region of human ORAI1. ORAI1 Antibody (C-term) - Background Dilution CRACM1 is a plasma membrane protein WB~~1:1000 essential for store-operated calcium entry (Vig et al., 2006 Format Purified polyclonal antibody supplied in PBS [PubMed with 0.09% (W/V) sodium azide. This 16645049]). antibody is purified through a protein A column, followed by peptide affinity ORAI1 Antibody (C-term) - References purification. Feng, M., et al. Cell 143(1):84-98(2010) Storage Kawasaki, T., et al. J. Biol. Chem. Maintain refrigerated at 2-8°C for up to 2 285(33):25720-25730(2010) weeks. For long term storage store at -20°C Motiani, R.K., et al.
    [Show full text]
  • Loureirin B Exerts Its Immunosuppressive Effects by Inhibiting STIM1/Orai1 and K V 1.3 Channels
    Washington University School of Medicine Digital Commons@Becker Open Access Publications 1-1-2021 Loureirin B exerts its immunosuppressive effects by inhibiting STIM1/Orai1 and K V 1.3 channels Shujuan Shi South-Central University for Nationalities Qianru Zhao South-Central University for Nationalities Caihua Ke South-Central University for Nationalities Siru Long South-Central University for Nationalities Feng Zhang South-Central University for Nationalities See next page for additional authors Follow this and additional works at: https://digitalcommons.wustl.edu/open_access_pubs Recommended Citation Shi, Shujuan; Zhao, Qianru; Ke, Caihua; Long, Siru; Zhang, Feng; Zhang, Xu; Li, Yi; Liu, Xinqiao; Hu, Hongzhen; and Yin, Shijin, ,"Loureirin B exerts its immunosuppressive effects by inhibiting STIM1/Orai1 and K V 1.3 channels." Frontiers in Pharmacology.,. (2021). https://digitalcommons.wustl.edu/open_access_pubs/10514 This Open Access Publication is brought to you for free and open access by Digital Commons@Becker. It has been accepted for inclusion in Open Access Publications by an authorized administrator of Digital Commons@Becker. For more information, please contact [email protected]. Authors Shujuan Shi, Qianru Zhao, Caihua Ke, Siru Long, Feng Zhang, Xu Zhang, Yi Li, Xinqiao Liu, Hongzhen Hu, and Shijin Yin This open access publication is available at Digital Commons@Becker: https://digitalcommons.wustl.edu/ open_access_pubs/10514 ORIGINAL RESEARCH published: 25 June 2021 doi: 10.3389/fphar.2021.685092 Loureirin B Exerts its Immunosuppressive Effects by Inhibiting STIM1/Orai1 and KV1.3 Channels Shujuan Shi 1†, Qianru Zhao 1†, Caihua Ke 1, Siru Long 1, Feng Zhang 1, Xu Zhang 1,YiLi1, Xinqiao Liu 1, Hongzhen Hu 2 and Shijin Yin 1* 1Department of Chemical Biology, School of Pharmaceutical Sciences, South-Central University for Nationalities, Wuhan, China, 2Department of Anesthesiology, the Center for the Study of Itch & Sensory Disorders, Washington University School of Medicine, St.
    [Show full text]