CD3-Positive Plasmablastic B-Cell Neoplasms
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IDENTIFICATION of CELL SURFACE MARKERS WHICH CORRELATE with SALL4 in a B-CELL ACUTE LYMPHOBLASTIC LEUKEMIA with T(8;14)
IDENTIFICATION of CELL SURFACE MARKERS WHICH CORRELATE WITH SALL4 in a B-CELL ACUTE LYMPHOBLASTIC LEUKEMIA WITH T(8;14) DISCOVERED THROUGH BIOINFORMATIC ANALYSIS of MICROARRAY GENE EXPRESSION DATA The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:38962442 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA ,'(17,),&$7,21 2) &(// 685)$&( 0$5.(56 :+,&+ &255(/$7( :,7+ 6$// ,1 $ %&(// $&87( /<03+2%/$67,& /(8.(0,$ :,7+ W ',6&29(5(' 7+528*+ %,2,1)250$7,& $1$/<6,6 2) 0,&52$55$< *(1( (;35(66,21 '$7$ 52%(57 3$8/ :(,1%(5* $ 7KHVLV 6XEPLWWHG WR WKH )DFXOW\ RI 7KH +DUYDUG 0HGLFDO 6FKRRO LQ 3DUWLDO )XOILOOPHQW RI WKH 5HTXLUHPHQWV IRU WKH 'HJUHH RI 0DVWHU RI 0HGLFDO 6FLHQFHV LQ ,PPXQRORJ\ +DUYDUG 8QLYHUVLW\ %RVWRQ 0DVVDFKXVHWWV -XQH Thesis Advisor: Dr. Li Chai Author: Robert Paul Weinberg Department of Pathology Candidate MMSc in Immunology Brigham and Womens’ Hospital Harvard Medical School 77 Francis Street 25 Shattuck Street Boston, MA 02215 Boston, MA 02215 IDENTIFICATION OF CELL SURFACE MARKERS WHICH CORRELATE WITH SALL4 IN A B-CELL ACUTE LYMPHOBLASTIC LEUKEMIA WITH TRANSLOCATION t(8;14) DISCOVERED THROUGH BIOINFORMATICS ANALYSIS OF MICROARRAY GENE EXPRESSION DATA Abstract Acute Lymphoblastic Leukemia (ALL) is the most common leukemia in children, causing signficant morbidity and mortality annually in the U.S. -
A Patient with Plasmablastic Lymphoma Achieving Long-Term
Broccoli et al. BMC Cancer (2018) 18:645 https://doi.org/10.1186/s12885-018-4561-9 CASE REPORT Open Access A patient with plasmablastic lymphoma achieving long-term complete remission after thalidomide-dexamethasone induction and double autologous stem cell transplantation: a case report Alessandro Broccoli*, Laura Nanni, Vittorio Stefoni, Claudio Agostinelli, Lisa Argnani, Michele Cavo and Pier Luigi Zinzani Abstract Background: No standard of care is established for plasmablastic lymphoma (PBL) and prognosis remains extremely poor, given that patients relapse early after chemotherapy and display resistance to commonly applied cytostatic drugs. Case presentation: We report a case of nodal, HIV-unrelated PBL in a patient who achieved and maintained a very long lasting complete remission after an intensive therapy consisting consisting of thalidomide plus dexamethasone followed by a consolidation with double autologous stem cell transplantation. Our approach was based on the full application of a standard multiple myeloma treatment and, to the best of our knowledge, it represents the only reported experience so far. This treatment was overall well tolerated. Conclusions: Multiple myeloma-like treatment may represent a possible alternative to intensive lymphoma-directed therapies. Background Case presentation Plasmablastic lymphoma (PBL) is a rare and highly A 46-year old Italian female presented in June 2007 aggressive subtype of diffuse large B-cell lymphoma, with 3 enlarged lymph nodes in her left groin without characterized by diffuse -
Receptor Structure in the Bacterial Sensing System (Chemotaxis/Membranes/Serine Receptor/Aspartate Receptor/Methyl-Accepting Chemotaxis Proteins) ELIZABETH A
Proc. Natl. Acad. Sci. USA Vol. 77, No. 12, pp. 7157-7161, December 1980 Biochemistry Receptor structure in the bacterial sensing system (chemotaxis/membranes/serine receptor/aspartate receptor/methyl-accepting chemotaxis proteins) ELIZABETH A. WANG AND DANIEL E. KOSHLAND, JR. Department of Biochemistry, University of California, Berkeley, California 94720 Contributed by Daniel E. Koshland, Jr., September 5,1980 ABSTRACT The primary receptors for aspartate and serine peptides recognizing the chemoeffector and producing the in bacterial chemotaxis have been shown to be the 60,000-dalton transmembrane signal were the same. This type of genetic proteins encoded by the tar and tsr genes. The evidence is: (i) evidence, however, cannot be conclusive per se in determining overproduction of the tar gene product at various levels by re- combinant DNA techniques produces proportionate increases the primary receptor because it can be argued that the trans- in aspartate binding; (ii) aspartate binding copurifies with membrane proteins are essential to maintain the conformation [3llmethyl-labeled tar gene product; (iii) antibody to tar and of a second recognition component. Definitive evidence in tsr protein fragments precipitates a single species of protein regard to the role of the 60,000-dalton tar and tsr gene products (60,000 daltons) which retains binding capacity and [3Hlcar- in binding was needed, and it was obtained as described below boxymethyl label. Partially purified tar gene product can be by a combination of recombinant DNA techniques and protein reconstituted into artificial vesicles and retains aspartate binding and aspartate-ensitive methylation and demethylation. purification. These results show that the aspartate and serine receptors are transmembrane proteins of a single polypeptide chain with the MATERIALS AND METHODS receptor recognition site on the outside of the membrane and the covalent methylation site on the inside. -
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
Case Report Inflammatory Pseudotumor-Like Follicular Dendritic Cell Sarcoma: a Rare Presentation of a Hepatic Mass
Int J Clin Exp Pathol 2019;12(8):3149-3155 www.ijcep.com /ISSN:1936-2625/IJCEP0096875 Case Report Inflammatory pseudotumor-like follicular dendritic cell sarcoma: a rare presentation of a hepatic mass Shuangshuang Deng, Jinli Gao Department of Pathology, Shanghai East Hospital, Tongji University School of Medicine, Shanghai, China Received May 12, 2019; Accepted June 25, 2019; Epub August 1, 2019; Published August 15, 2019 Abstract: Follicular dendritic cell (FDC) sarcoma is a rare, low-grade malignant tumor originating from follicular dendritic cells in germinal centers that accounts for 0.4% of all soft tissue sarcomas. FDC sarcoma is classified into two types, the classic FDC sarcoma and inflammatory pseudotumor (IPT)-like follicular dendritic cell (FDC) sarcoma, the latter of which is rarer. IPT-like FDC sarcoma mainly involves the spleen and liver with non-specific clinical and imaging manifestations. It is often misdiagnosed as an inflammatory disease such as a liver abscess or a malignant tumor such as hepatocellular carcinoma, with a pathological morphology similar to inflammatory pseudotumors. IPT-like FDC sarcoma mainly consists of a large number of inflammatory and round, oval and spindle cells with less pleomorphism. These tumor cells are arranged in a whorled, storiform, or sheet pattern. The immunophenotype of IPT-like FDC sarcoma is the same as that of FDC sarcoma and is positive for CD21, CD23, and CD35, and positive for EBER in situ hybridization (ISH). This disease is easily misdiagnosed because it is so rare that clinicians and pathologists may not consider it in diagnosis. Here, a case of IPT-like FDC sarcoma in the liver was reported, and the related literature was reviewed to summarize the clinicopathological features, treatment, and prognosis of this rare new type of FDC sarcoma, providing new knowledge of this rare neoplasm. -
Extracavitary/Solid Variant of Primary Effusion Lymphoma Yoonjung Kim, Mda,1, Vasiliki Leventaki, Mda, Feriyl Bhaijee, Mbchbb, ⁎ Courtney C
Available online at www.sciencedirect.com Annals of Diagnostic Pathology 16 (2012) 441–446 Extracavitary/solid variant of primary effusion lymphoma Yoonjung Kim, MDa,1, Vasiliki Leventaki, MDa, Feriyl Bhaijee, MBChBb, ⁎ Courtney C. Jackson, MDb, L. Jeffrey Medeiros, MDa, Francisco Vega, MD PhDa, aDepartment of Hematopathology, The University of Texas, MD Anderson Cancer Center, Houston, TX 77030, USA bDepartment of Pathology, University of Mississippi Medical Center, Jackson, MS, USA Abstract Primary effusion lymphoma (PEL) is a distinct clinicopathologic entity associated with human herpesvirus 8 (HHV8) infection that mostly affects patients with immunodeficiency. Primary effusion lymphoma usually presents as a malignant effusion involving the pleural, peritoneal, and/or pericardial cavities without a tumor mass. Rare cases of HHV8-positive lymphoma with features similar to PEL can present as tumor masses in the absence of cavity effusions and are considered to represent an extracavitary or solid variant of PEL. Here, we report 3 cases of extracavitary PEL arising in human immunodeficiency virus–infected men. Two patients had lymphadenopathy and underwent lymph node biopsy. One patient had a mass involving the ileum and ascending colon. In lymph nodes, the tumor was predominantly sinusoidal. The tumor involving the ileum and ascending colon presented as 2 masses, 12.5 × 10.6 × 2.6 cm in the colon and 3.6 × 2.7 × 1.9 cm in the ileum. In each case, the neoplasms were composed of large anaplastic cells, and 2 cases had “hallmark cells.” Immunohistochemistry showed that all cases were positive for HHV8 and CD138. One case also expressed CD4 and CD30, and 1 case was positive for Epstein-Barr virus–encoded RNA. -
Bacterial Chemotaxis Towards Polysaccharide Pectin by Pectin
www.nature.com/scientificreports OPEN Bacterial chemotaxis towards polysaccharide pectin by pectin- binding protein Hidenori Konishi1, Mamoru Hio2, Masahiro Kobayashi1, Ryuichi Takase1,2 & Wataru Hashimoto1,2* As opposed to typical bacteria exhibiting chemotaxis towards low-molecular-weight substances, such as amino acids and mono/oligosaccharides, gram-negative Sphingomonas sp. strain A1 shows chemotaxis towards alginate and pectin polysaccharides. To identify the mechanism of chemotaxis towards macromolecules, a genomic fragment was isolated from the wild-type strain A1 through complementation with the mutant strain A1-M5 lacking chemotaxis towards pectin. This fragment contained several genes including sph1118. Through whole-genome sequencing of strain A1-M5, sph1118 was found to harbour a mutation. In fact, sph1118 disruptant lost chemotaxis towards pectin, and this defciency was recovered by complementation with wild-type sph1118. Interestingly, the gene disruptant also exhibited decreased pectin assimilation. Furthermore, the gene product SPH1118 was expressed in recombinant E. coli cells, purifed and characterised. Diferential scanning fuorimetry and UV absorption spectroscopy revealed that SPH1118 specifcally binds to pectin with a dissociation constant of 8.5 μM. Using binding assay and primary structure analysis, SPH1118 was predicted to be a periplasmic pectin-binding protein associated with an ATP-binding cassette transporter. This is the frst report on the identifcation and characterisation of a protein triggering chemotaxis towards the macromolecule pectin as well as its assimilation. Bacterial cells move to preferred conditions or leave adverse ones using their fagella, depending on the con- centration gradient of chemotactic substances in the environment; this is referred to as chemotaxis1. Te fagel- lum comprises a basal body, hook and flament. -
Primary Effusion Lymphoma Occurring in the Setting of Transplanted Patients
Zanelli et al. BMC Cancer (2021) 21:468 https://doi.org/10.1186/s12885-021-08215-7 RESEARCH ARTICLE Open Access Primary effusion lymphoma occurring in the setting of transplanted patients: a systematic review of a rare, life-threatening post-transplantation occurrence Magda Zanelli1*† , Francesca Sanguedolce2†, Maurizio Zizzo3,4, Andrea Palicelli1, Maria Chiara Bassi5, Giacomo Santandrea1, Giovanni Martino6, Alessandra Soriano7, Cecilia Caprera8, Matteo Corsi8, Stefano Ricci1, Linda Ricci8 and Stefano Ascani8 Abstract Background: Primary effusion lymphoma is a rare, aggressive large B-cell lymphoma strictly linked to infection by Human Herpes virus 8/Kaposi sarcoma-associated herpes virus. In its classic form, it is characterized by body cavities neoplastic effusions without detectable tumor masses. It often occurs in immunocompromised patients, such as HIV- positive individuals. Primary effusion lymphoma may affect HIV-negative elderly patients from Human Herpes virus 8 endemic regions. So far, rare cases have been reported in transplanted patients. The purpose of our systematic review is to improve our understanding of this type of aggressive lymphoma in the setting of transplantation, focusing on epidemiology, clinical presentation, pathological features, differential diagnosis, treatment and outcome. The role of assessing the viral serological status in donors and recipients is also discussed. Methods: We performed a systematic review adhering to the PRISMA guidelines. The literature search was conducted on PubMed/MEDLINE, Web of Science, Scopus, EMBASE and Cochrane Library, using the search terms “primary effusion lymphoma” and “post-transplant”. Results: Our search identified 13 cases of post-transplant primary effusion lymphoma, predominantly in solid organ transplant recipients (6 kidney, 3 heart, 2 liver and 1 intestine), with only one case after allogenic bone marrow transplantation. -
Plasmablastic Lymphomas and Plasmablastic Plasma Cell Myelomas Have Nearly Identical Immunophenotypic Profiles
Modern Pathology (2005) 18, 806–815 & 2005 USCAP, Inc All rights reserved 0893-3952/05 $30.00 www.modernpathology.org Plasmablastic lymphomas and plasmablastic plasma cell myelomas have nearly identical immunophenotypic profiles Francisco Vega1, Chung-Che Chang2, Leonard J Medeiros3, Mark M Udden4, Jeong Hee Cho-Vega5, Ching-Ching Lau6, Chris J Finch1, Regis A Vilchez4,7, David McGregor1 and Jeffrey L Jorgensen3 1Department of Pathology, Baylor College of Medicine, University of Texas MD Anderson Cancer Center, Houston, TX, USA; 2Department of Hematopathology, The Methodist Hospital, University of Texas MD Anderson Cancer Center, Houston, TX, USA; 3Department of Hematopathology, University of Texas MD Anderson Cancer Center, Houston, TX, USA; 4Department of Medicine, Baylor College of Medicine, University of Texas MD Anderson Cancer Center, Houston, TX, USA; 5Department of Molecular Pathology, University of Texas MD Anderson Cancer Center, Houston, TX, USA; 6Department of Pediatrics, Baylor College of Medicine, University of Texas MD Anderson Cancer Center, Houston, TX, USA and 7Department of Molecular Virology and Microbiology, Baylor College of Medicine, University of Texas MD Anderson Cancer Center, Houston, TX, USA Plasmablastic lymphoma is an aggressive neoplasm that shares many cytomorphologic and immunopheno- typic features with plasmablastic plasma cell myeloma. However, plasmablastic lymphoma is listed in the World Health Organization (WHO) classification as a variant of diffuse large B-cell lymphoma. To characterize the relationship between plasmablastic lymphoma and plasmablastic plasma cell myeloma, we performed immunohistochemistry using a large panel of B-cell and plasma cell markers on nine cases of plasmablastic lymphoma and seven cases of plasmablastic plasma cell myeloma with and without HIV/AIDS. -
Molecular and Cellular Tumor Marker Proficiency Test Event MCTM 3-2014 Summary of Results 1
Molecular and Cellular Tumor Marker Proficiency Test Event MCTM 3-2014 Summary of results 1 May 20, 2014 Dear Laboratory Director, Below is a summary and discussion of the New York State Molecular and Cellular Tumor Markers proficiency test event MCTM 3-2014 from March 18, 2014, due date April 16, 2014. Samples: All laboratories received three (3) different specimens prepared by Wadsworth Center personnel. Evaluation: Laboratories were asked to perform those molecular assays for which they hold or have applied for a NYS permit. A total of 38 laboratories participated, performing various numbers and combinations of tests. The attached tables summarize the results and methods that were used by participating laboratories. In Table 1, a consensus interpretation is shown of R: rearranged/clonal band detected; G: germline/no clonal band detected; WT : wild-type; MUT : mutated; NEG : negative or not detected; POS : positive or detected; O: oligoclonal; N: no clonal band or fusion product detected. For IGHV only: H: clonal band detected and hypermutated; U: clonal band detected, but not hypermutated; I (Indeterminate) is shown if no consensus was reached because less than three labs performed a test, or if the concordance between labs was less than 80%. Please note that only the all method consensus is shown. If there were distinct method specific discrepancies these are discussed in the relevant section below. Each lab will receive a personalized result sheet by regular mail that shows your lab’s results in comparison to the all lab consensus (if any) derived from all methods combined. Two scores were calculated, one for each genotypic marker (assay score ) across all three samples, and one for each sample ( sample score ) across all assays performed by your lab for each sample. -
Next Generation Sequencing Reveals Changes of the Γδ T Cell Receptor
www.nature.com/scientificreports Correction: Author Correction OPEN Next generation sequencing reveals changes of the γδ T cell receptor repertoires in patients Received: 24 November 2017 Accepted: 14 February 2018 with pulmonary tuberculosis Published online: 02 March 2018 Chaofei Cheng1, Bei Wang1,2, Lei Gao1, Jianmin Liu4, Xinchun Chen5, He Huang1,2 & Zhendong Zhao1,2,3 Tuberculosis (TB) is a severe global threat to human health. The immune protection initiated by γδ T cells play an important role in mycobacterial infection. Vaccines for Mycobacterium tuberculosis (Mtb) based on γδ T cells provide a novel approach for TB control. In our previous studies, we found a preponderant complementarity-determining region 3 (CDR3) sequence of the γδ T cell receptor (TCR) in TB patients, and successfully identifed a tuberculosis antigen that can efectively activate γδ T cells with a reverse genetic strategy. However, due to the throughput limitation of the method we used, the information we obtained about the γδ TCR repertoire and preponderant CDR3 sequences was limited. In this study, we introduced next generation sequencing (NGS) to study the γδ TCR CDR3 repertoires in TB patients. We found that the CDR3δ tended to be more polyclonal and CDR3γ tended to be longer in TB patients; the γδ T cells expressing CDR3 sequences using a Vγ9-JγP rearrangement expanded signifcantly during Mtb infection. We also identifed new preponderant CDR3 sequences during Mtb infection. This study comprehensively characterized the γδ T cell receptor repertoire changes, and provides useful information for the development of new vaccines and adjuvants against TB. Tuberculosis (TB) caused by Mycobacterium tuberculosis (Mtb), the top infectious disease killer worldwide, remains a severe global threat to human health. -
(CMS) Healthcare Common Procedure Coding System (HCPCS) Application Summaries and Coding Decisions Fourth Quarter, 2020 Coding Cycle for Drug and Biological Products
Centers for Medicare & Medicaid Services (CMS) Healthcare Common Procedure Coding System (HCPCS) Application Summaries and Coding Decisions Fourth Quarter, 2020 Coding Cycle for Drug and Biological Products This HCPCS Code Application Summary document presents, in request number sequence, a summary of each HCPCS code application and CMS’ HCPCS coding decision for each application processed in CMS’ Fourth Quarter 2020 Drug and Biological HCPCS code application review cycle. Each individual summary includes: the application number; topic; summary of the applicant's request as written by the applicant with occasional minor, non- substantive editorial changes made by CMS; CMS' HCPCS coding decision; and the effective date of any coding action which, for the purpose of this publication, refers to the date the code is first available to be billed on claims. These HCPCS coding decisions will also be included in the April 2021 HCPCS Quarterly Update, pending publication by CMS in the coming weeks at: https://www.cms.gov/Medicare/Coding/HCPCSReleaseCodeSets/Alpha-Numer ic-HCPCS. 1 Request # 20.021I Topic/Issue After further review of Medicare Part B policy, CMS is revising existing code J7321 to include Visco-3 and discontinuing code J7333, which reads "Hyaluronan or derivative, visco-3, for intra- articular injection, per dose". Our recommendation improves consistency with policy at https://www.cms.gov/Medicare/Coding/MedHCPCSGenInfo/Downloads/051807_coding_annou cement.pdf, which states: “Section 1847A requires single source drugs or biologicals that were within the same billing and payment code as of October 1, 2003, be treated as multiple source drugs, so the payment under Section 1847A for these drugs and biologicals is based on the volume weighted average of the pricing information for all of the products within the billing and payment code.” It has come to our attention that Visco-3 was approved by the FDA under a supplement premarket approval (PMA) number (P980044) on December 21, 2015 and not an original PMA.