Acid-Sensing Ion Channels Alexander Et Al
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A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
Transcriptomic Analysis of Native Versus Cultured Human and Mouse Dorsal Root Ganglia Focused on Pharmacological Targets Short
bioRxiv preprint doi: https://doi.org/10.1101/766865; this version posted September 12, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Transcriptomic analysis of native versus cultured human and mouse dorsal root ganglia focused on pharmacological targets Short title: Comparative transcriptomics of acutely dissected versus cultured DRGs Andi Wangzhou1, Lisa A. McIlvried2, Candler Paige1, Paulino Barragan-Iglesias1, Carolyn A. Guzman1, Gregory Dussor1, Pradipta R. Ray1,#, Robert W. Gereau IV2, # and Theodore J. Price1, # 1The University of Texas at Dallas, School of Behavioral and Brain Sciences and Center for Advanced Pain Studies, 800 W Campbell Rd. Richardson, TX, 75080, USA 2Washington University Pain Center and Department of Anesthesiology, Washington University School of Medicine # corresponding authors [email protected], [email protected] and [email protected] Funding: NIH grants T32DA007261 (LM); NS065926 and NS102161 (TJP); NS106953 and NS042595 (RWG). The authors declare no conflicts of interest Author Contributions Conceived of the Project: PRR, RWG IV and TJP Performed Experiments: AW, LAM, CP, PB-I Supervised Experiments: GD, RWG IV, TJP Analyzed Data: AW, LAM, CP, CAG, PRR Supervised Bioinformatics Analysis: PRR Drew Figures: AW, PRR Wrote and Edited Manuscript: AW, LAM, CP, GD, PRR, RWG IV, TJP All authors approved the final version of the manuscript. 1 bioRxiv preprint doi: https://doi.org/10.1101/766865; this version posted September 12, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Citric Acid in Drug Formulations Causes Pain by Potentiating Acid-Sensing Ion Channel 1
Research Articles: Cellular/Molecular Citric acid in drug formulations causes pain by potentiating acid-sensing ion channel 1 https://doi.org/10.1523/JNEUROSCI.2087-20.2021 Cite as: J. Neurosci 2021; 10.1523/JNEUROSCI.2087-20.2021 Received: 8 August 2020 Revised: 8 December 2020 Accepted: 10 April 2021 This Early Release article has been peer-reviewed and accepted, but has not been through the composition and copyediting processes. The final version may differ slightly in style or formatting and will contain links to any extended data. Alerts: Sign up at www.jneurosci.org/alerts to receive customized email alerts when the fully formatted version of this article is published. Copyright © 2021 Yang and Lai This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license, which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed. 1 Citric acid in drug formulations causes pain by potentiating 2 acid-sensing ion channel 1 3 4 Abbreviated title: ASIC1 mediates pain caused by citric acid 5 6 Ya Lan Yang1, Ted Weita Lai1,2,3* 7 8 1Graduate Institute of Biomedical Sciences, China Medical University, Taichung, Taiwan. 9 2Drug Development Center, China Medical University, Taichung, Taiwan. 10 3Translational Medicine Research Center, China Medical University Hospital, Taichung, 11 Taiwan. 12 13 *Correspondence should be addressed to Ted Weita Lai at [email protected] 14 15 Number of pages: 24 16 17 Number of figures: 9 18 19 Number of words: Abstract, 250; Introduction, 565; Discussion, 1500. -
The Chondrocyte Channelome: a Novel Ion Channel Candidate in the Pathogenesis of Pectus Deformities
Old Dominion University ODU Digital Commons Biological Sciences Theses & Dissertations Biological Sciences Summer 2017 The Chondrocyte Channelome: A Novel Ion Channel Candidate in the Pathogenesis of Pectus Deformities Anthony J. Asmar Old Dominion University, [email protected] Follow this and additional works at: https://digitalcommons.odu.edu/biology_etds Part of the Biology Commons, Molecular Biology Commons, and the Physiology Commons Recommended Citation Asmar, Anthony J.. "The Chondrocyte Channelome: A Novel Ion Channel Candidate in the Pathogenesis of Pectus Deformities" (2017). Doctor of Philosophy (PhD), Dissertation, Biological Sciences, Old Dominion University, DOI: 10.25777/pyha-7838 https://digitalcommons.odu.edu/biology_etds/19 This Dissertation is brought to you for free and open access by the Biological Sciences at ODU Digital Commons. It has been accepted for inclusion in Biological Sciences Theses & Dissertations by an authorized administrator of ODU Digital Commons. For more information, please contact [email protected]. THE CHONDROCYTE CHANNELOME: A NOVEL ION CHANNEL CANDIDATE IN THE PATHOGENESIS OF PECTUS DEFORMITIES by Anthony J. Asmar B.S. Biology May 2010, Virginia Polytechnic Institute M.S. Biology May 2013, Old Dominion University A Dissertation Submitted to the Faculty of Old Dominion University in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY BIOMEDICAL SCIENCES OLD DOMINION UNIVERSITY August 2017 Approved by: Christopher Osgood (Co-Director) Michael Stacey (Co-Director) Lesley Greene (Member) Andrei Pakhomov (Member) Jing He (Member) ABSTRACT THE CHONDROCYTE CHANNELOME: A NOVEL ION CHANNEL CANDIDATE IN THE PATHOGENESIS OF PECTUS DEFORMITIES Anthony J. Asmar Old Dominion University, 2017 Co-Directors: Dr. Christopher Osgood Dr. Michael Stacey Costal cartilage is a type of rod-like hyaline cartilage connecting the ribs to the sternum. -
Supplementary Table 1. Pain and PTSS Associated Genes (N = 604
Supplementary Table 1. Pain and PTSS associated genes (n = 604) compiled from three established pain gene databases (PainNetworks,[61] Algynomics,[52] and PainGenes[42]) and one PTSS gene database (PTSDgene[88]). These genes were used in in silico analyses aimed at identifying miRNA that are predicted to preferentially target this list genes vs. a random set of genes (of the same length). ABCC4 ACE2 ACHE ACPP ACSL1 ADAM11 ADAMTS5 ADCY5 ADCYAP1 ADCYAP1R1 ADM ADORA2A ADORA2B ADRA1A ADRA1B ADRA1D ADRA2A ADRA2C ADRB1 ADRB2 ADRB3 ADRBK1 ADRBK2 AGTR2 ALOX12 ANO1 ANO3 APOE APP AQP1 AQP4 ARL5B ARRB1 ARRB2 ASIC1 ASIC2 ATF1 ATF3 ATF6B ATP1A1 ATP1B3 ATP2B1 ATP6V1A ATP6V1B2 ATP6V1G2 AVPR1A AVPR2 BACE1 BAMBI BDKRB2 BDNF BHLHE22 BTG2 CA8 CACNA1A CACNA1B CACNA1C CACNA1E CACNA1G CACNA1H CACNA2D1 CACNA2D2 CACNA2D3 CACNB3 CACNG2 CALB1 CALCRL CALM2 CAMK2A CAMK2B CAMK4 CAT CCK CCKAR CCKBR CCL2 CCL3 CCL4 CCR1 CCR7 CD274 CD38 CD4 CD40 CDH11 CDK5 CDK5R1 CDKN1A CHRM1 CHRM2 CHRM3 CHRM5 CHRNA5 CHRNA7 CHRNB2 CHRNB4 CHUK CLCN6 CLOCK CNGA3 CNR1 COL11A2 COL9A1 COMT COQ10A CPN1 CPS1 CREB1 CRH CRHBP CRHR1 CRHR2 CRIP2 CRYAA CSF2 CSF2RB CSK CSMD1 CSNK1A1 CSNK1E CTSB CTSS CX3CL1 CXCL5 CXCR3 CXCR4 CYBB CYP19A1 CYP2D6 CYP3A4 DAB1 DAO DBH DBI DICER1 DISC1 DLG2 DLG4 DPCR1 DPP4 DRD1 DRD2 DRD3 DRD4 DRGX DTNBP1 DUSP6 ECE2 EDN1 EDNRA EDNRB EFNB1 EFNB2 EGF EGFR EGR1 EGR3 ENPP2 EPB41L2 EPHB1 EPHB2 EPHB3 EPHB4 EPHB6 EPHX2 ERBB2 ERBB4 EREG ESR1 ESR2 ETV1 EZR F2R F2RL1 F2RL2 FAAH FAM19A4 FGF2 FKBP5 FLOT1 FMR1 FOS FOSB FOSL2 FOXN1 FRMPD4 FSTL1 FYN GABARAPL1 GABBR1 GABBR2 GABRA2 GABRA4 -
Mechanosensitive Channels: Multiplicity of Families and Gating Paradigms
R EVIEW Mechanosensitive Channels: Multiplicity of Families and Gating Paradigms Sergei Sukharev1* and David P. Corey2* (Published 10 February 2004) Mechanosensitive ion channels are the primary and comprise just a few GTP-binding protein (G protein)–cou- transducers that convert mechanical force into an pled receptor second-messenger pathways (1–3). Given these electrical or chemical signal in hearing, touch, and examples, should we be looking for universal mechanotransduc- other mechanical senses. Unlike vision, olfaction, tion mechanisms within these various systems and presume that and some types of taste, which all use similar kinds the primary receiver elements are essentially the same, but are of primary heterotrimeric GTP-binding protein–cou- tuned differently depending on the setting? If not, are there dif- pled receptors, mechanosensation relies on diverse ferent types of mechanoreceptors that use similar biophysical types of transducer molecules. Unrelated types of principles but dissimilar molecular mechanisms, which arose channels can be used for the perception of various independently many times in the course of evolution? The ex- mechanical stimuli, not only in distant groups of or- amples discussed below suggest that the latter scenario is more ganisms, but also in separate locations of the same likely. Although incomplete, the available molecular data sug- organism. The extreme sensitivity of the transduction gest a multiplicity of structural designs and mechanisms of mechanism in the auditory system, which relies on mechanoreceptors not only across the tree of life, but also with- an elaborate structure of rigid cilia, filamentous in single organisms. This diversity implies that careful analysis links, and molecular motors to focus force on trans- of individual systems will be required before generalizations duction channels, contrasts with that of the bacterial can be made. -
Multiple Modulation of Acid-Sensing Ion Channel 1A by the Alkaloid Daurisoline
biomolecules Article Multiple Modulation of Acid-Sensing Ion Channel 1a by the Alkaloid Daurisoline Dmitry I. Osmakov 1,2,* , Sergey G. Koshelev 1, Ekaterina N. Lyukmanova 1, Mikhail A. Shulepko 1, Yaroslav A. Andreev 1,2, Peter Illes 3 and Sergey A. Kozlov 1 1 Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, ul. Miklukho-Maklaya 16/10, 117997 Moscow, Russia 2 Institute of Molecular Medicine, Sechenov First Moscow State Medical University, Trubetskaya str. 8, bld. 2, 119991 Moscow, Russia 3 Rudolf-Boehm-Institut für Pharmakologie und Toxikologie, University of Leipzig, 04107 Leipzig, Germany * Correspondence: [email protected] Received: 26 June 2019; Accepted: 1 August 2019; Published: 2 August 2019 Abstract: Acid-sensing ion channels (ASICs) are proton-gated sodium-selective channels that are expressed in the peripheral and central nervous systems. ASIC1a is one of the most intensively studied isoforms due to its importance and wide representation in organisms, but it is still largely unexplored as a target for therapy. In this study, we demonstrated response of the ASIC1a to acidification in the presence of the daurisoline (DAU) ligand. DAU alone did not activate the channel, but in combination with protons, it produced the second peak component of the ASIC1a current. This second peak differs from the sustained component (which is induced by RF-amide peptides), as the second (DAU-induced) peak is completely desensitized, with the same kinetics as the main peak. The co-application of DAU and mambalgin-2 indicated that their binding sites do not overlap. Additionally,we found an asymmetry in the pH activation curve of the channel, which was well-described by a mathematical model based on the multiplied probabilities of protons binding with a pool of high-cooperative sites and a single proton binding with a non-cooperative site. -
Ion Channels
UC Davis UC Davis Previously Published Works Title THE CONCISE GUIDE TO PHARMACOLOGY 2019/20: Ion channels. Permalink https://escholarship.org/uc/item/1442g5hg Journal British journal of pharmacology, 176 Suppl 1(S1) ISSN 0007-1188 Authors Alexander, Stephen PH Mathie, Alistair Peters, John A et al. Publication Date 2019-12-01 DOI 10.1111/bph.14749 License https://creativecommons.org/licenses/by/4.0/ 4.0 Peer reviewed eScholarship.org Powered by the California Digital Library University of California S.P.H. Alexander et al. The Concise Guide to PHARMACOLOGY 2019/20: Ion channels. British Journal of Pharmacology (2019) 176, S142–S228 THE CONCISE GUIDE TO PHARMACOLOGY 2019/20: Ion channels Stephen PH Alexander1 , Alistair Mathie2 ,JohnAPeters3 , Emma L Veale2 , Jörg Striessnig4 , Eamonn Kelly5, Jane F Armstrong6 , Elena Faccenda6 ,SimonDHarding6 ,AdamJPawson6 , Joanna L Sharman6 , Christopher Southan6 , Jamie A Davies6 and CGTP Collaborators 1School of Life Sciences, University of Nottingham Medical School, Nottingham, NG7 2UH, UK 2Medway School of Pharmacy, The Universities of Greenwich and Kent at Medway, Anson Building, Central Avenue, Chatham Maritime, Chatham, Kent, ME4 4TB, UK 3Neuroscience Division, Medical Education Institute, Ninewells Hospital and Medical School, University of Dundee, Dundee, DD1 9SY, UK 4Pharmacology and Toxicology, Institute of Pharmacy, University of Innsbruck, A-6020 Innsbruck, Austria 5School of Physiology, Pharmacology and Neuroscience, University of Bristol, Bristol, BS8 1TD, UK 6Centre for Discovery Brain Science, University of Edinburgh, Edinburgh, EH8 9XD, UK Abstract The Concise Guide to PHARMACOLOGY 2019/20 is the fourth in this series of biennial publications. The Concise Guide provides concise overviews of the key properties of nearly 1800 human drug targets with an emphasis on selective pharmacology (where available), plus links to the open access knowledgebase source of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. -
Ion Channels Accelerated D1scovery
Quality Antibodies · Quality Results $-GeneTex Your Expertise Our Antibod1es Ion Channels Accelerated D1scovery --------- www.genetex.com Potassium (K+ ) Sodium (Na+ ) Calcium (Ca2+ ) Ion channels are pore-forming, usually multimeric plasma membrane proteins that can open and close in response to chemical, temperature, or mechanical signals. An open channel allows specific ions to rapid ly traverse the transmembrane passageway a long an electrochemical gradient, generating an electrical signal that is propagated along excitable cells. Ion channels are of immense importance in clinical medicine as they are linked to a broad array of disorders and are targets of an ever-expanding, and commonly prescribed, armamentarium of pharmacologic agents. Nevertheless, there remains a great void in our understanding of ion channel biology, which limits our ability to develop more effective andmo re specific drugs. GeneTex offers an outstanding selection of antibodies to support ion channel research.Please see the highlighted antibodies in this flyer or review our complete list of related products on the GeneTex website. Highlighted products HCNl antibody (GTX131334} DPP6 antibody (GTX133338} IP3 Receptor I antibody (GTX133104} (...___ ___w _w _w_ ._G_e_n_e_T_e_x_._c_o_m_ _____,) ` a n a 匱 。 'ot I: . ·""·,, " . 鼴 丶•' · ,' , `> ,,, 丶 B -- ,:: ·-- o .i :' T. 、 冨 ,. \\.◄ .•}' r<• .. , -·•Jt.<_,,,, . ◄ · ◄ / .Jj -~~ 盆;i . '. ., CACNB4 (GTX100202) VGluTl antibody (GTX133148) P2X7一 antibody (GTX104288) Cavl.2 antibody (GTX54754) Cav2.1 antibody (GTX54753) -
A Variant of ASIC2 Mediates Sodium Retention in Nephrotic Syndrome
A variant of ASIC2 mediates sodium retention in nephrotic syndrome Marc Fila, … , Gilles Crambert, Alain Doucet JCI Insight. 2021. https://doi.org/10.1172/jci.insight.148588. Research In-Press Preview Nephrology Graphical abstract Find the latest version: https://jci.me/148588/pdf 1 A variant of ASIC2 mediates sodium retention in nephrotic syndrome 1,2Marc Fila *, 1,2Ali Sassi*, 1,2Gaëlle Brideau, 1,2Lydie Cheval, 1,2 Luciana Morla, 1,2Pascal Houillier, 1,2Christine Walter, 1,2Michel Gennaoui, 1,2Laure Collignon L, 1,2Mathilde Keck, 1,2Gabrielle Planelles, 1,2Naziha Bakouh, 3Michel Peuchmaur, 4Georges Deschênes, 5Ignacio Anegon, 5Séverine Remy, 6Bruno Vogt, 1,2 Gilles Crambert#, 1,2Alain Doucet 1Centre de Recherche des Cordeliers, Sorbonne Universités, INSERM, Université de Paris, Laboratoire de Physiologie Rénale et Tubulopathies, F-75006, Paris, France 2CNRS, ERL8228, F-75006, Paris, France 3Cytology and Pathology DePartment, Robert Debré HosPital, F-75019, Paris, France 4Pediatric NePhrology DePartment, Robert Debré HosPital, F-75019, Paris, France 5INSERM UMR 1064, Centre de Recherches en TransPlantation et Immunologie (CRTI), Transgenic Rats ImmunoPhenomic facility, Nantes, France. 6DePartment of NePhrology and HyPertension, InselsPital, Bern University HosPital, CH- 3010, Bern, Switzerland Present address: Marc Fila, Pediatric NePhrology DePartment, HôPital Arnaud de Villeneuve Institut de Génomique Fonctionnelle UMR9023 CNRS U661 INSERM, MontPellier, France; Ali Sassi, DePartment of Cellular Physiology and Metabolism, University -
1 1 2 3 Cell Type-Specific Transcriptomics of Hypothalamic
1 2 3 4 Cell type-specific transcriptomics of hypothalamic energy-sensing neuron responses to 5 weight-loss 6 7 Fredrick E. Henry1,†, Ken Sugino1,†, Adam Tozer2, Tiago Branco2, Scott M. Sternson1,* 8 9 1Janelia Research Campus, Howard Hughes Medical Institute, 19700 Helix Drive, Ashburn, VA 10 20147, USA. 11 2Division of Neurobiology, Medical Research Council Laboratory of Molecular Biology, 12 Cambridge CB2 0QH, UK 13 14 †Co-first author 15 *Correspondence to: [email protected] 16 Phone: 571-209-4103 17 18 Authors have no competing interests 19 1 20 Abstract 21 Molecular and cellular processes in neurons are critical for sensing and responding to energy 22 deficit states, such as during weight-loss. AGRP neurons are a key hypothalamic population 23 that is activated during energy deficit and increases appetite and weight-gain. Cell type-specific 24 transcriptomics can be used to identify pathways that counteract weight-loss, and here we 25 report high-quality gene expression profiles of AGRP neurons from well-fed and food-deprived 26 young adult mice. For comparison, we also analyzed POMC neurons, an intermingled 27 population that suppresses appetite and body weight. We find that AGRP neurons are 28 considerably more sensitive to energy deficit than POMC neurons. Furthermore, we identify cell 29 type-specific pathways involving endoplasmic reticulum-stress, circadian signaling, ion 30 channels, neuropeptides, and receptors. Combined with methods to validate and manipulate 31 these pathways, this resource greatly expands molecular insight into neuronal regulation of 32 body weight, and may be useful for devising therapeutic strategies for obesity and eating 33 disorders. -
Neuronal Mechanism for Acute Mechanosensitivity in Tactile-Foraging Waterfowl
Neuronal mechanism for acute mechanosensitivity in tactile-foraging waterfowl Eve R. Schneidera, Marco Mastrottoa,b, Willem J. Laursena,b, Vincent P. Schulzc, Jena B. Goodmana,b, Owen H. Funka, Patrick G. Gallagherc, Elena O. Grachevaa,b,1, and Sviatoslav N. Bagriantseva,1 aDepartment of Cellular and Molecular Physiology, bYale Program in Cellular Neuroscience, Neurodegeneration and Repair, cDepartment of Pediatrics, Yale University School of Medicine, New Haven, CT 06520 Edited by Jon H. Kaas, Vanderbilt University, Nashville, TN, and approved August 26, 2014 (received for review July 17, 2014) Relying almost exclusively on their acute sense of touch, tactile- (MA current) in the absence of other tissue components (12–17). foraging birds can feed in murky water, but the cellular mecha- Despite such an abundance of mechanosensitive neurons, only nism is unknown. Mechanical stimuli activate specialized cutane- a small fraction of them are dedicated to the perception of light ous end organs in the bill, innervated by trigeminal afferents. We touch, whereas the majority are nociceptors and thermoreceptors report that trigeminal ganglia (TG) of domestic and wild tactile- (18, 19). This heterogeneity significantly impedes progress in foraging ducks exhibit numerical expansion of large-diameter mech- understanding the contribution of the intrinsic mechanosensi- anoreceptive neurons expressing the mechano-gated ion channel tivity of primary afferents to light touch perception. Piezo2. These features are not found in visually foraging birds. More- Here, we explored functional specialization of somatosensory over, in the duck, the expansion of mechanoreceptors occurs at the ganglia from tactile-foraging ducks. We found that the majority expense of thermosensors. Direct mechanical stimulation of duck TG neurons evokes high-amplitude depolarizing current with a low of TG neurons of several duck species are light-touch receptors threshold of activation, high signal amplification gain, and slow expressing the mechano-gated ion channel Piezo2.