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Rhesus Macaque Sequencing
White Paper for Complete Sequencing of the Rhesus Macaque (Macaca mulatta) Genome Jeffrey Rogers1, Michael Katze 2, Roger Bumgarner2, Richard A. Gibbs 3 and George M. Weinstock3 I. Introduction Humans are members of the Order Primates and our closest evolutionary relatives are other primate species. This makes primate models of human disease particularly important, as the underlying physiology and metabolism, as well as genomic structure, are more similar to humans than are other mammals. Chimpanzees (Pan troglodytes) are the animals most similar to humans in overall DNA sequence, with interspecies sequence differences of approximately 1- 1.5% (Stewart and Disotell 1998, Page and Goodman 2001). The other apes, including gorillas and orangutans are nearly as similar to humans. The animals next most closely related to humans are Old World monkeys, superfamily Cercopithecoidea. This group includes the common laboratory species of rhesus macaque (Macaca mulatta), baboon (Papio hamadryas), pig-tailed macaque (Macaca nemestrina) and African green monkey (Chlorocebus aethiops). The human evolutionary lineage separated from the ancestors of chimpanzees about 6-7 million years ago (MYA), while the human/ape lineage diverged from Old World monkeys about 25 MYA (Stewart and Disotell 1998), and from another important primate group, the New World monkeys, more than 35-40 MYA. In comparison, humans diverged from mice and other non- primate mammals about 65-85 MYA (Kumar and Hedges 1998, Eizirik et al 2001). In the evaluation of primate candidates for genome sequencing there should be more to selection of an organism than evolutionary considerations. The chimpanzee’s status as Closest Relative To Human has earned it an exemption from this consideration. -
Body Measurements for the Monkeys of Bioko Island, Equatorial Guinea
Primate Conservation 2009 (24): 99–105 Body Measurements for the Monkeys of Bioko Island, Equatorial Guinea Thomas M. Butynski¹,², Yvonne A. de Jong² and Gail W. Hearn¹ ¹Bioko Biodiversity Protection Program, Drexel University, Philadelphia, PA, USA ²Eastern Africa Primate Diversity and Conservation Program, Nanyuki, Kenya Abstract: Bioko Island, Equatorial Guinea, has a rich (eight genera, 11 species), unique (seven endemic subspecies), and threat- ened (five species) primate fauna, but the taxonomic status of most forms is not clear. This uncertainty is a serious problem for the setting of priorities for the conservation of Bioko’s (and the region’s) primates. Some of the questions related to the taxonomic status of Bioko’s primates can be resolved through the statistical comparison of data on their body measurements with those of their counterparts on the African mainland. Data for such comparisons are, however, lacking. This note presents the first large set of body measurement data for each of the seven species of monkeys endemic to Bioko; means, ranges, standard deviations and sample sizes for seven body measurements. These 49 data sets derive from 544 fresh adult specimens (235 adult males and 309 adult females) collected by shotgun hunters for sale in the bushmeat market in Malabo. Key Words: Bioko Island, body measurements, conservation, monkeys, morphology, taxonomy Introduction gordonorum), and surprisingly few such data exist even for some of the more widespread species (for example, Allen’s Comparing external body measurements for adult indi- swamp monkey Allenopithecus nigroviridis, northern tala- viduals from different sites has long been used as a tool for poin monkey Miopithecus ogouensis, and grivet Chlorocebus describing populations, subspecies, and species of animals aethiops). -
POPULATION STATUS of OLIVE BABOON Papio Anubis (LESSON, 1827) in KAINJI LAKE NATIONAL PARK, NIGERIA *Ajayi, S. R. , Ejidike, B
Ajayi et al., 2020 Journal of Research in Forestry, Wildlife & Environment Vol. 12(2) June, 2020 E-m a il: [email protected] ; [email protected] http://www.ajol.info/index.php/jrfwe 270 jfewr ©2020 - jfewr Publications This work is licensed under a ISBN: 2141 – 1778 Creative Commons Attribution 4.0 License Ajayi et al., 2020 POPULATION STATUS OF OLIVE BABOON Papio anubis (LESSON, 1827) IN KAINJI LAKE NATIONAL PARK, NIGERIA *Ajayi, S. R. 1, Ejidike, B. N. 2, Ogunjemite, B.G. 2, Olaniyi, O. E2 and Adeola, A.J. 1 1Federal College of Wildlife Management, New Bussa, Niger State, Nigeria 2Federal University of Technology, Akure, Department of Ecotourism and Wildlife Management, Ondo State, Nigeria *Correspondence author E-mail: [email protected]; +234 706 841 7840 ABSTRACT The study assessed the population status of Olive Baboon Papio anubis in Kainji Lake National Park, in both sectors of the park. Direct count was carried out on the line transect where activities of Olive Baboon Papio anubis was observed during reconnaissance survey. It involves counting of individual or group of individual species sighted. While the indirect method involves gathering information on current locations for primate through consultation with experience Park Rangers, hunters, farmers and community leaders, counting of animal index such as feacal droppings, foot prints, calls, and feeding remnants, within each transect. These were related to relative abundance/distribution of Primates in a particular area at a particular time. Data was collected from November, 2017-August, 2019. Data was analyzed using distance software. Student t-test was used to compare between wet and dry seasons population. -
The Taxonomy of Primates in the Laboratory Context
P0800261_01 7/14/05 8:00 AM Page 3 C HAPTER 1 The Taxonomy of Primates T HE T in the Laboratory Context AXONOMY OF P Colin Groves RIMATES School of Archaeology and Anthropology, Australian National University, Canberra, ACT 0200, Australia 3 What are species? D Taxonomy: EFINITION OF THE The biological Organizing nature species concept Taxonomy means classifying organisms. It is nowadays commonly used as a synonym for systematics, though Disagreement as to what precisely constitutes a species P strictly speaking systematics is a much broader sphere is to be expected, given that the concept serves so many RIMATE of interest – interrelationships, and biodiversity. At the functions (Vane-Wright, 1992). We may be interested basis of taxonomy lies that much-debated concept, the in classification as such, or in the evolutionary implica- species. tions of species; in the theory of species, or in simply M ODEL Because there is so much misunderstanding about how to recognize them; or in their reproductive, phys- what a species is, it is necessary to give some space to iological, or husbandry status. discussion of the concept. The importance of what we Most non-specialists probably have some vague mean by the word “species” goes way beyond taxonomy idea that species are defined by not interbreeding with as such: it affects such diverse fields as genetics, biogeog- each other; usually, that hybrids between different species raphy, population biology, ecology, ethology, and bio- are sterile, or that they are incapable of hybridizing at diversity; in an era in which threats to the natural all. Such an impression ultimately derives from the def- world and its biodiversity are accelerating, it affects inition by Mayr (1940), whereby species are “groups of conservation strategies (Rojas, 1992). -
The Behavioral Ecology of the Tibetan Macaque
Fascinating Life Sciences Jin-Hua Li · Lixing Sun Peter M. Kappeler Editors The Behavioral Ecology of the Tibetan Macaque Fascinating Life Sciences This interdisciplinary series brings together the most essential and captivating topics in the life sciences. They range from the plant sciences to zoology, from the microbiome to macrobiome, and from basic biology to biotechnology. The series not only highlights fascinating research; it also discusses major challenges associ- ated with the life sciences and related disciplines and outlines future research directions. Individual volumes provide in-depth information, are richly illustrated with photographs, illustrations, and maps, and feature suggestions for further reading or glossaries where appropriate. Interested researchers in all areas of the life sciences, as well as biology enthu- siasts, will find the series’ interdisciplinary focus and highly readable volumes especially appealing. More information about this series at http://www.springer.com/series/15408 Jin-Hua Li • Lixing Sun • Peter M. Kappeler Editors The Behavioral Ecology of the Tibetan Macaque Editors Jin-Hua Li Lixing Sun School of Resources Department of Biological Sciences, Primate and Environmental Engineering Behavior and Ecology Program Anhui University Central Washington University Hefei, Anhui, China Ellensburg, WA, USA International Collaborative Research Center for Huangshan Biodiversity and Tibetan Macaque Behavioral Ecology Anhui, China School of Life Sciences Hefei Normal University Hefei, Anhui, China Peter M. Kappeler Behavioral Ecology and Sociobiology Unit, German Primate Center Leibniz Institute for Primate Research Göttingen, Germany Department of Anthropology/Sociobiology University of Göttingen Göttingen, Germany ISSN 2509-6745 ISSN 2509-6753 (electronic) Fascinating Life Sciences ISBN 978-3-030-27919-6 ISBN 978-3-030-27920-2 (eBook) https://doi.org/10.1007/978-3-030-27920-2 This book is an open access publication. -
HAMADRYAS BABOON (Papio Hamadryas) CARE MANUAL
HAMADRYAS BABOON (Papio hamadryas) CARE MANUAL CREATED BY THE AZA Hamadryas Baboon Species Survival Plan® Program IN ASSOCIATION WITH THE AZA Old World Monkey Taxon Advisory Group Hamadryas Baboon (Papio hamadryas) Care Manual Hamadryas Baboon (Papio hamadryas) Care Manual Published by the Association of Zoos and Aquariums in collaboration with the AZA Animal Welfare Committee Formal Citation: AZA Baboon Species Survival Plan®. (2020). Hamadryas Baboon Care Manual. Silver Spring, MD: Association of Zoos and Aquariums. Original Completion Date: July 2020 Authors and Significant Contributors: Jodi Neely Wiley, AZA Hamadryas Baboon SSP Coordinator and Studbook Keeper, North Carolina Zoo Margaret Rousser, Oakland Zoo Terry Webb, Toledo Zoo Ryan Devoe, Disney Animal Kingdom Katie Delk, North Carolina Zoo Michael Maslanka, Smithsonian National Zoological Park and Conservation Biology Institute Reviewers: Joe Knobbe, San Francisco Zoological Gardens, former Old World Monkey TAG Chair, SSP Vice Coordinator Hamadryas Baboon AZA Staff Editors: Felicia Spector, Animal Care Manual Editor Consultant Candice Dorsey, PhD, Senior Vice President, Conservation, Management, & Welfare Sciences Rebecca Greenberg, Animal Programs Director Emily Wagner, Conservation Science & Education Intern Raven Spencer, Conservation, Management, & Welfare Sciences Intern Hana Johnstone, Conservation, Management, & Welfare Sciences Intern Cover Photo Credits: Jodi Neely Wiley, North Carolina Zoo Disclaimer: This manual presents a compilation of knowledge provided by recognized animal experts based on the current science, practice, and technology of animal management. The manual assembles basic requirements, best practices, and animal care recommendations to maximize capacity for excellence in animal care and welfare. The manual should be considered a work in progress, since practices continue to evolve through advances in scientific knowledge. -
Ranging Bonnet Macaques, Macaca Radiata
Flexibility in Food Extraction Techniques in Urban Free- Ranging Bonnet Macaques, Macaca radiata Madhur Mangalam1, Mewa Singh1,2* 1 Biopsychology Laboratory, University of Mysore, Mysore, India, 2 Evolutionary & Organismal Biology Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore, India Abstract Non-human primate populations, other than responding appropriately to naturally occurring challenges, also need to cope with anthropogenic factors such as environmental pollution, resource depletion, and habitat destruction. Populations and individuals are likely to show considerable variations in food extraction abilities, with some populations and individuals more efficient than others at exploiting a set of resources. In this study, we examined among urban free-ranging bonnet macaques, Macaca radiata (a) local differences in food extraction abilities, (b) between-individual variation and within-individual consistency in problem-solving success and the underlying problem-solving characteristics, and (c) behavioral patterns associated with higher efficiency in food extraction. When presented with novel food extraction tasks, the urban macaques having more frequent exposure to novel physical objects in their surroundings, extracted food material from PET bottles and also solved another food extraction task (i.e., extracting an orange from a wire mesh box), more often than those living under more natural conditions. Adults solved the tasks more frequently than juveniles, and females more frequently than males. Both solution-technique and problem-solving characteristics varied across individuals but remained consistent within each individual across the successive presentations of PET bottles. The macaques that solved the tasks showed lesser within-individual variation in their food extraction behavior as compared to those that failed to solve the tasks. -
Analysis of 100 High-Coverage Genomes from a Pedigreed Captive Baboon Colony
Downloaded from genome.cshlp.org on September 27, 2021 - Published by Cold Spring Harbor Laboratory Press Resource Analysis of 100 high-coverage genomes from a pedigreed captive baboon colony Jacqueline A. Robinson,1 Saurabh Belsare,1 Shifra Birnbaum,2 Deborah E. Newman,2 Jeannie Chan,2 Jeremy P. Glenn,2 Betsy Ferguson,3,4 Laura A. Cox,5,6 and Jeffrey D. Wall1 1Institute for Human Genetics, University of California, San Francisco, California 94143, USA; 2Department of Genetics, Texas Biomedical Research Institute, San Antonio, Texas 78245, USA; 3Division of Genetics, Oregon National Primate Research Center, Beaverton, Oregon 97006, USA; 4Department of Molecular and Medical Genetics, Oregon Health and Science University, Portland, Oregon 97239, USA; 5Center for Precision Medicine, Department of Internal Medicine, Section of Molecular Medicine, Wake Forest School of Medicine, Winston-Salem, North Carolina 27101, USA; 6Southwest National Primate Research Center, Texas Biomedical Research Institute, San Antonio, Texas 78245, USA Baboons (genus Papio) are broadly studied in the wild and in captivity. They are widely used as a nonhuman primate model for biomedical studies, and the Southwest National Primate Research Center (SNPRC) at Texas Biomedical Research Institute has maintained a large captive baboon colony for more than 50 yr. Unlike other model organisms, however, the genomic resources for baboons are severely lacking. This has hindered the progress of studies using baboons as a model for basic biology or human disease. Here, we describe a data set of 100 high-coverage whole-genome sequences obtained from the mixed colony of olive (P. anubis) and yellow (P. cynocephalus) baboons housed at the SNPRC. -
Laboratory Primate Newsletter
LABORATORY PRIMATE NEWSLETTER Vol. 45, No. 3 July 2006 JUDITH E. SCHRIER, EDITOR JAMES S. HARPER, GORDON J. HANKINSON AND LARRY HULSEBOS, ASSOCIATE EDITORS MORRIS L. POVAR, CONSULTING EDITOR ELVA MATHIESEN, ASSISTANT EDITOR ALLAN M. SCHRIER, FOUNDING EDITOR, 1962-1987 Published Quarterly by the Schrier Research Laboratory Psychology Department, Brown University Providence, Rhode Island ISSN 0023-6861 POLICY STATEMENT The Laboratory Primate Newsletter provides a central source of information about nonhuman primates and re- lated matters to scientists who use these animals in their research and those whose work supports such research. The Newsletter (1) provides information on care and breeding of nonhuman primates for laboratory research, (2) dis- seminates general information and news about the world of primate research (such as announcements of meetings, research projects, sources of information, nomenclature changes), (3) helps meet the special research needs of indi- vidual investigators by publishing requests for research material or for information related to specific research prob- lems, and (4) serves the cause of conservation of nonhuman primates by publishing information on that topic. As a rule, research articles or summaries accepted for the Newsletter have some practical implications or provide general information likely to be of interest to investigators in a variety of areas of primate research. However, special con- sideration will be given to articles containing data on primates not conveniently publishable elsewhere. General descriptions of current research projects on primates will also be welcome. The Newsletter appears quarterly and is intended primarily for persons doing research with nonhuman primates. Back issues may be purchased for $5.00 each. -
Macaques ( Macaca Leonina ): Impact on Their Seed Dispersal Effectiveness and Ecological Contribution in a Tropical Rainforest at Khao Yai National Park, Thailand
Faculté des Sciences Département de Biologie, Ecologie et Environnement Unité de Biologie du Comportement, Ethologie et Psychologie Animale Feeding and ranging behavior of northern pigtailed macaques ( Macaca leonina ): impact on their seed dispersal effectiveness and ecological contribution in a tropical rainforest at Khao Yai National Park, Thailand ~ ~ ~ Régime alimentaire et déplacements des macaques à queue de cochon ( Macaca leonina ) : impact sur leur efficacité dans la dispersion des graines et sur leur contribution écologique dans une forêt tropicale du parc national de Khao Yai, Thaïlande Année académique 2011-2012 Dissertation présentée par Aurélie Albert en vue de l’obtention du grade de Docteur en Sciences Faculté des Sciences Département de Biologie, Ecologie et Environnement Unité de Biologie du Comportement, Ethologie et Psychologie Animale Feeding and ranging behavior of northern pigtailed macaques ( Macaca leonina ): impact on their seed dispersal effectiveness and ecological contribution in a tropical rainforest at Khao Yai National Park, Thailand ~ ~ ~ Régime alimentaire et déplacements des macaques à queue de cochon ( Macaca leonina ) : impact sur leur efficacité dans la dispersion des graines et sur leur contribution écologique dans une forêt tropicale du parc national de Khao Yai, Thaïlande Année académique 2011-2012 Dissertation présentée par Aurélie Albert en vue de l’obtention du grade de Docteur en Sciences Promotrice : Marie-Claude Huynen (ULg, Belgique) Comité de thèse : Tommaso Savini (KMUTT, Thaïlande) Alain Hambuckers (ULg, Belgique) Pascal Poncin (ULg, Belgique) Président du jury : Jean-Marie Bouquegneau (ULg, Belgique) Membres du jury : Pierre-Michel Forget (MNHN, France) Régine Vercauteren Drubbel (ULB, Belgique) Roseline C. Beudels-Jamar (IRSN, Belgique) Copyright © 2012, Aurélie Albert Toute reproduction du présent document, par quelque procédé que ce soit, ne peut être réalisée qu’avec l’autorisation de l’auteur et du/des promoteur(s). -
High-Ranking Geladas Protect and Comfort Others After Conflicts
www.nature.com/scientificreports OPEN High-Ranking Geladas Protect and Comfort Others After Conficts Elisabetta Palagi1, Alessia Leone1, Elisa Demuru1 & Pier Francesco Ferrari2 Post-confict afliation is a mechanism favored by natural selection to manage conficts in animal Received: 2 January 2018 groups thus avoiding group disruption. Triadic afliation towards the victim can reduce the likelihood Accepted: 30 August 2018 of redirection (benefts to third-parties) and protect and provide comfort to the victim by reducing its Published: xx xx xxxx post-confict anxiety (benefts to victims). Here, we test specifc hypotheses on the potential functions of triadic afliation in Theropithecus gelada, a primate species living in complex multi-level societies. Our results show that higher-ranking geladas provided more spontaneous triadic afliation than lower- ranking subjects and that these contacts signifcantly reduced the likelihood of further aggression on the victim. Spontaneous triadic afliation signifcantly reduced the victim’s anxiety (measured by scratching), although it was not biased towards kin or friends. In conclusion, triadic afliation in geladas seems to be a strategy available to high-ranking subjects to reduce the social tension generated by a confict. Although this interpretation is the most parsimonious one, it cannot be totally excluded that third parties could also be afected by the negative emotional state of the victim thus increasing a third party’s motivation to provide comfort. Therefore, the debate on the linkage between third-party afliation and emotional contagion in monkeys remains to be resolved. Conficts in social animals can have various immediate and long-term outcomes. Immediately following a con- fict, opponents may show a wide range of responses, from tolerance and avoidance of open confict, to aggres- sion1. -
The Sex Lives of Female Olive Baboons (Papio Anubis)
Competition, coercion, and choice: The sex lives of female olive baboons (Papio anubis) DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Jessica Terese Walz Graduate Program in Anthropology The Ohio State University 2016 Dissertation Committee: Dawn M. Kitchen, Chair Douglas E. Crews W. Scott McGraw Copyrighted by Jessica Walz 2016 Abstract Since Darwin first described his theory of sexual selection, evolutionary biologists have used this framework to understand the potential for morphological, physiological, and behavioral traits to evolve within each sex. Recently, researchers have revealed important nuances in effects of sexual coercion, intersexual conflict, and sex role reversals. Among our closest relatives living in complex societies in which individuals interact outside of just the context of mating, the sexual and social lives of individuals are tightly intertwined. An important challenge to biological anthropologists is demonstrating whether female opportunities for mate choice are overridden by male- male competitive and male-female coercive strategies that dominate multi-male, multi- female societies. In this dissertation, I explore interactions between these various mechanisms of competition, coercion, and choice acting on the lives of female olive baboons to determine how they may influence expression of female behavioral and vocal signals, copulatory success with specific males, and the role of female competition in influencing mating patterns. I found females solicit specific males around the time of ovulation. Although what makes some males more preferred is less clear, there is evidence females choose males who might be better future protectors – males who will have long group tenures and are currently ascending the hierarchy.