Generative Models for Global Collaboration Relationships Ertugrul Necdet Ciftcioglu1, Ram Ramanathan2 & Prithwish Basu2
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Group-In-A-Box Layout for Multi-Faceted Analysis of Communities
2011 IEEE International Conference on Privacy, Security, Risk, and Trust, and IEEE International Conference on Social Computing Group-In-a-Box Layout for Multi-faceted Analysis of Communities Eduarda Mendes Rodrigues*, Natasa Milic-Frayling †, Marc Smith‡, Ben Shneiderman§, Derek Hansen¶ * Dept. of Informatics Engineering, Faculty of Engineering, University of Porto, Portugal [email protected] † Microsoft Research, Cambridge, UK [email protected] ‡ Connected Action Consulting Group, Belmont, California, USA [email protected] § Dept. of Computer Science & Human-Computer Interaction Lab University of Maryland, College Park, Maryland, USA [email protected] ¶ College of Information Studies & Center for the Advanced Study of Communities and Information University of Maryland, College Park, Maryland, USA [email protected] Abstract—Communities in social networks emerge from One particularly important aspect of social network interactions among individuals and can be analyzed through a analysis is the detection of communities, i.e., sub-groups of combination of clustering and graph layout algorithms. These individuals or entities that exhibit tight interconnectivity approaches result in 2D or 3D visualizations of clustered among the wider population. For example, Twitter users who graphs, with groups of vertices representing individuals that regularly retweet each other’s messages may form cohesive form a community. However, in many instances the vertices groups within the Twitter social network. In a network have attributes that divide individuals into distinct categories visualization they would appear as clusters or sub-graphs, such as gender, profession, geographic location, and similar. It often colored distinctly or represented by a different vertex is often important to investigate what categories of individuals shape in order to convey their group identity. -
Joint Estimation of Preferential Attachment and Node Fitness In
www.nature.com/scientificreports OPEN Joint estimation of preferential attachment and node fitness in growing complex networks Received: 15 April 2016 Thong Pham1, Paul Sheridan2 & Hidetoshi Shimodaira1 Accepted: 09 August 2016 Complex network growth across diverse fields of science is hypothesized to be driven in the main by Published: 07 September 2016 a combination of preferential attachment and node fitness processes. For measuring the respective influences of these processes, previous approaches make strong and untested assumptions on the functional forms of either the preferential attachment function or fitness function or both. We introduce a Bayesian statistical method called PAFit to estimate preferential attachment and node fitness without imposing such functional constraints that works by maximizing a log-likelihood function with suitably added regularization terms. We use PAFit to investigate the interplay between preferential attachment and node fitness processes in a Facebook wall-post network. While we uncover evidence for both preferential attachment and node fitness, thus validating the hypothesis that these processes together drive complex network evolution, we also find that node fitness plays the bigger role in determining the degree of a node. This is the first validation of its kind on real-world network data. But surprisingly the rate of preferential attachment is found to deviate from the conventional log-linear form when node fitness is taken into account. The proposed method is implemented in the R package PAFit. The study of complex network evolution is a hallmark of network science. Research in this discipline is inspired by empirical observations underscoring the widespread nature of certain structural features, such as the small-world property1, a high clustering coefficient2, a heavy tail in the degree distribution3, assortative mixing patterns among nodes4, and community structure5 in a multitude of biological, societal, and technological networks6–11. -
Optimal Subgraph Structures in Scale-Free Configuration
Submitted to the Annals of Applied Probability OPTIMAL SUBGRAPH STRUCTURES IN SCALE-FREE CONFIGURATION MODELS , By Remco van der Hofstad∗ §, Johan S. H. van , , Leeuwaarden∗ ¶ and Clara Stegehuis∗ k Eindhoven University of Technology§, Tilburg University¶ and Twente Universityk Subgraphs reveal information about the geometry and function- alities of complex networks. For scale-free networks with unbounded degree fluctuations, we obtain the asymptotics of the number of times a small connected graph occurs as a subgraph or as an induced sub- graph. We obtain these results by analyzing the configuration model with degree exponent τ (2, 3) and introducing a novel class of op- ∈ timization problems. For any given subgraph, the unique optimizer describes the degrees of the vertices that together span the subgraph. We find that subgraphs typically occur between vertices with specific degree ranges. In this way, we can count and characterize all sub- graphs. We refrain from double counting in the case of multi-edges, essentially counting the subgraphs in the erased configuration model. 1. Introduction Scale-free networks often have degree distributions that follow power laws with exponent τ (2, 3) [1, 11, 22, 34]. Many net- ∈ works have been reported to satisfy these conditions, including metabolic networks, the internet and social networks. Scale-free networks come with the presence of hubs, i.e., vertices of extremely high degrees. Another property of real-world scale-free networks is that the clustering coefficient (the probability that two uniformly chosen neighbors of a vertex are neighbors themselves) decreases with the vertex degree [4, 10, 24, 32, 34], again following a power law. -
Detecting Statistically Significant Communities
1 Detecting Statistically Significant Communities Zengyou He, Hao Liang, Zheng Chen, Can Zhao, Yan Liu Abstract—Community detection is a key data analysis problem across different fields. During the past decades, numerous algorithms have been proposed to address this issue. However, most work on community detection does not address the issue of statistical significance. Although some research efforts have been made towards mining statistically significant communities, deriving an analytical solution of p-value for one community under the configuration model is still a challenging mission that remains unsolved. The configuration model is a widely used random graph model in community detection, in which the degree of each node is preserved in the generated random networks. To partially fulfill this void, we present a tight upper bound on the p-value of a single community under the configuration model, which can be used for quantifying the statistical significance of each community analytically. Meanwhile, we present a local search method to detect statistically significant communities in an iterative manner. Experimental results demonstrate that our method is comparable with the competing methods on detecting statistically significant communities. Index Terms—Community Detection, Random Graphs, Configuration Model, Statistical Significance. F 1 INTRODUCTION ETWORKS are widely used for modeling the structure function that is able to always achieve the best performance N of complex systems in many fields, such as biology, in all possible scenarios. engineering, and social science. Within the networks, some However, most of these objective functions (metrics) do vertices with similar properties will form communities that not address the issue of statistical significance of commu- have more internal connections and less external links. -
Processes on Complex Networks. Percolation
Chapter 5 Processes on complex networks. Percolation 77 Up till now we discussed the structure of the complex networks. The actual reason to study this structure is to understand how this structure influences the behavior of random processes on networks. I will talk about two such processes. The first one is the percolation process. The second one is the spread of epidemics. There are a lot of open problems in this area, the main of which can be innocently formulated as: How the network topology influences the dynamics of random processes on this network. We are still quite far from a definite answer to this question. 5.1 Percolation 5.1.1 Introduction to percolation Percolation is one of the simplest processes that exhibit the critical phenomena or phase transition. This means that there is a parameter in the system, whose small change yields a large change in the system behavior. To define the percolation process, consider a graph, that has a large connected component. In the classical settings, percolation was actually studied on infinite graphs, whose vertices constitute the set Zd, and edges connect each vertex with nearest neighbors, but we consider general random graphs. We have parameter ϕ, which is the probability that any edge present in the underlying graph is open or closed (an event with probability 1 − ϕ) independently of the other edges. Actually, if we talk about edges being open or closed, this means that we discuss bond percolation. It is also possible to talk about the vertices being open or closed, and this is called site percolation. -
Percolation Thresholds for Robust Network Connectivity
Percolation Thresholds for Robust Network Connectivity Arman Mohseni-Kabir1, Mihir Pant2, Don Towsley3, Saikat Guha4, Ananthram Swami5 1. Physics Department, University of Massachusetts Amherst, [email protected] 2. Massachusetts Institute of Technology 3. College of Information and Computer Sciences, University of Massachusetts Amherst 4. College of Optical Sciences, University of Arizona 5. Army Research Laboratory Abstract Communication networks, power grids, and transportation networks are all examples of networks whose performance depends on reliable connectivity of their underlying network components even in the presence of usual network dynamics due to mobility, node or edge failures, and varying traffic loads. Percolation theory quantifies the threshold value of a local control parameter such as a node occupation (resp., deletion) probability or an edge activation (resp., removal) probability above (resp., below) which there exists a giant connected component (GCC), a connected component comprising of a number of occupied nodes and active edges whose size is proportional to the size of the network itself. Any pair of occupied nodes in the GCC is connected via at least one path comprised of active edges and occupied nodes. The mere existence of the GCC itself does not guarantee that the long-range connectivity would be robust, e.g., to random link or node failures due to network dynamics. In this paper, we explore new percolation thresholds that guarantee not only spanning network connectivity, but also robustness. We define and analyze four measures of robust network connectivity, explore their interrelationships, and numerically evaluate the respective robust percolation thresholds arXiv:2006.14496v1 [physics.soc-ph] 25 Jun 2020 for the 2D square lattice. -
Synthetic Graph Generation for Data-Intensive HPC Benchmarking: Background and Framework
ORNL/TM-2013/339 Synthetic Graph Generation for Data-Intensive HPC Benchmarking: Background and Framework October 2013 Prepared by Joshua Lothian, Sarah Powers, Blair D. Sullivan, Matthew Baker, Jonathan Schrock, Stephen W. Poole DOCUMENT AVAILABILITY Reports produced after January 1, 1996, are generally available free via the U.S. Department of Energy (DOE) Information Bridge: Web Site: http://www.osti.gov/bridge Reports produced before January 1, 1996, may be purchased by members of the public from the following source: National Technical Information Service 5285 Port Royal Road Springfield, VA 22161 Telephone: 703-605-6000 (1-800-553-6847) TDD: 703-487-4639 Fax: 703-605-6900 E-mail: [email protected] Web site: http://www.ntis.gov/support/ordernowabout.htm Reports are available to DOE employees, DOE contractors, Energy Technology Data Ex- change (ETDE), and International Nuclear Information System (INIS) representatives from the following sources: Office of Scientific and Technical Information P.O. Box 62 Oak Ridge, TN 37831 Telephone: 865-576-8401 Fax: 865-576-5728 E-mail: [email protected] Web site:http://www.osti.gov/contact.html This report was prepared as an account of work sponsored by an agency of the United States Government. Neither the United States nor any agency thereof, nor any of their employees, makes any warranty, express or implied, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed, or represents that its use would not infringe privately owned rights. Reference herein to any specific commercial product, process, or service by trade name, trademark, manufacturer, or other- wise, does not necessarily constitute or imply its endorsement, recommendation, or favoring by the United States Government or any agency thereof. -
Preferential Attachment Model with Degree Bound and Its Application to Key Predistribution in WSN
Preferential Attachment Model with Degree Bound and its Application to Key Predistribution in WSN Sushmita Rujy and Arindam Palz y Indian Statistical Institute, Kolkata, India. Email: [email protected] z TCS Innovation Labs, Kolkata, India. Email: [email protected] Abstract—Preferential attachment models have been widely particularly those in the military domain [14]. The resource studied in complex networks, because they can explain the constrained nature of sensors restricts the use of public key formation of many networks like social networks, citation methods to secure communication. Key predistribution [7] networks, power grids, and biological networks, to name a few. Motivated by the application of key predistribution in wireless is a widely used symmetric key management technique in sensor networks (WSN), we initiate the study of preferential which cryptographic keys are preloaded in sensor networks attachment with degree bound. prior to deployment. Sensor nodes find out the common keys Our paper has two important contributions to two different using a shared key discovery phase. Messages are encrypted areas. The first is a contribution in the study of complex by the source node using the shared key and decrypted at the networks. We propose preferential attachment model with degree bound for the first time. In the normal preferential receiving node using the same key. attachment model, the degree distribution follows a power law, The number of keys in each node is to be minimized, in with many nodes of low degree and a few nodes of high degree. order to reduce storage space. Direct communication between In our scheme, the nodes can have a maximum degree dmax, any pair of nodes help in quick and easy transmission of where dmax is an integer chosen according to the application. -
Bellwethers and the Emergence of Trends in Online Communities
Bellwethers and the Emergence of Trends in Online Communities Yasuaki Sakamoto ([email protected]) Elliot Sadlon ([email protected]) Jeffrey V. Nickerson ([email protected]) Center for Decision Technologies Howe School of Technology Management, Stevens Institute of Technology Castle Point on Hudson, Hoboken, NJ 07030 USA Abstract Group-level phenomena, such as trends and congestion, are difficult to predict as behaviors at the group-level typically di- verge from simple aggregates of behaviors at the individual- level. In the present work, we examine the processes by which collective decisions emerge by analyzing how some arti- cles gain vast popularity in a community-based website, Digg. Through statistical analyses and computer simulations of hu- man voting processes under varying social influences, we show that users’ earlier choices have some influence on the later choices of others. Moreover, the present results suggest that there are special individuals who attract followers and guide the development of trends in online social networks. Keywords: Trends, trendsetters, group behavior, social influ- ence, social networks. Figure 1: A snapshot of Digg homepage. Background An individual’s decisions are often influenced by the context the social (Levine, Resnick, & Higgins, 1993) and distributed or the environment in which the decisions are made. For ex- (Hutchins, 1995) nature of learning and thinking in cognitive ample, preferences between two choices can change when a science (Goldstone & Janssen, 2005; Harnad & Dror, 2006). third option is introduced (Tversky, 1972). At the same time, The past work in collective behavior tends to focus on peo- an individual’s actions alter the environments. By modifying ple’s behavior in controlled laboratory experiments (Gureckis their surroundings, humans indirectly communicate to one & Goldstone, 2006), following the tradition of research in in- another and influence one another’s cognition. -
Albert-László Barabási with Emma K
Network Science Class 5: BA model Albert-László Barabási With Emma K. Towlson, Sebastian Ruf, Michael Danziger and Louis Shekhtman www.BarabasiLab.com Section 1 Introduction Section 1 Hubs represent the most striking difference between a random and a scale-free network. Their emergence in many real systems raises several fundamental questions: • Why does the random network model of Erdős and Rényi fail to reproduce the hubs and the power laws observed in many real networks? • Why do so different systems as the WWW or the cell converge to a similar scale-free architecture? Section 2 Growth and preferential attachment BA MODEL: Growth ER model: the number of nodes, N, is fixed (static models) networks expand through the addition of new nodes Barabási & Albert, Science 286, 509 (1999) BA MODEL: Preferential attachment ER model: links are added randomly to the network New nodes prefer to connect to the more connected nodes Barabási & Albert, Science 286, 509 (1999) Network Science: Evolving Network Models Section 2: Growth and Preferential Sttachment The random network model differs from real networks in two important characteristics: Growth: While the random network model assumes that the number of nodes is fixed (time invariant), real networks are the result of a growth process that continuously increases. Preferential Attachment: While nodes in random networks randomly choose their interaction partner, in real networks new nodes prefer to link to the more connected nodes. Barabási & Albert, Science 286, 509 (1999) Network Science: Evolving Network Models Section 3 The Barabási-Albert model Origin of SF networks: Growth and preferential attachment (1) Networks continuously expand by the GROWTH: addition of new nodes add a new node with m links WWW : addition of new documents PREFERENTIAL ATTACHMENT: (2) New nodes prefer to link to highly the probability that a node connects to a node connected nodes. -
Information Thermodynamics and Reducibility of Large Gene Networks
Supplementary Information: Information Thermodynamics and Reducibility of Large Gene Networks Swarnavo Sarkar#, Joseph B. Hubbard, Michael Halter, and Anne L. Plant* National Institute of Standards and Technology, Gaithersburg, MD 20899, USA #[email protected] *[email protected] S1. Generating model GRNs All the model GRNs presented in the main text were generated using the NetworkX package (version 2.5) for Python. Specifically, the barabasi_albert_graph function was used to create graphs using the Barabási-Albert preferential attachment model [1]. The barabasi_albert_graph(n, m) function requires two inputs: (1) the number of nodes in the graph, �, and (2) the number of edges connecting a new node to existing nodes in the graph, �, and produces an undirected graph. The documentation for the barabasi_albert_graph functiona fully describes the algorithm for generating the graphs from the inputs � and �. We then convert the undirected Barabási-Albert graph into a directed one. In the NetworkX graph object, an undirected edge between nodes �! and �" is equivalent to a directed edge from �! to �" and also a directed edge from �" to �!. We transformed the undirected Barabási-Albert graphs into directed graphs by deleting any edge from �! to �" when the node numbers constituting the edge satisfy the condition, � > �. This deletion results in every node in the graph having the same in-degree, �, without any constraint on the out-degree. The final graph object, � = (�, �), contains vertices numbered from 0 to � − 1, and each directed edge �! → �" in the set � is such that � < �. A source node �! can only send information to node numbers higher than itself. Hence, the non-trivial values in the loss field, �(� → �), (as shown in figures 2b and 2c) are confined within the upper diagonal, � < �. -
15 Netsci Configuration Model.Key
Configuring random graph models with fixed degree sequences Daniel B. Larremore Santa Fe Institute June 21, 2017 NetSci [email protected] @danlarremore Brief note on references: This talk does not include references to literature, which are numerous and important. Most (but not all) references are included in the arXiv paper: arxiv.org/abs/1608.00607 Stochastic models, sets, and distributions • a generative model is just a recipe: choose parameters→make the network • a stochastic generative model is also just a recipe: choose parameters→draw a network • since a single stochastic generative model can generate many networks, the model itself corresponds to a set of networks. • and since the generative model itself is some combination or composition of random variables, a random graph model is a set of possible networks, each with an associated probability, i.e., a distribution. this talk: configuration models: uniform distributions over networks w/ fixed deg. seq. Why care about random graphs w/ fixed degree sequence? Since many networks have broad or peculiar degree sequences, these random graph distributions are commonly used for: Hypothesis testing: Can a particular network’s properties be explained by the degree sequence alone? Modeling: How does the degree distribution affect the epidemic threshold for disease transmission? Null model for Modularity, Stochastic Block Model: Compare an empirical graph with (possibly) community structure to the ensemble of random graphs with the same vertex degrees. e a loopy multigraphs c d simple simple loopy graphs multigraphs graphs Stub Matching tono multiedgesdraw from theno config. self-loops model ~k = 1, 2, 2, 1 b { } 3 3 4 3 4 3 4 4 multigraphs 2 5 2 5 2 5 2 5 1 1 6 6 1 6 1 6 3 3 the 4standard algorithm:4 3 4 4 loopy and/or 5 5 draw2 from5 the distribution2 5 by sequential2 “Stub Matching”2 1 1 6 6 1 6 1 6 1.