Molecules, Mechanisms, and Disorders of Self-Domestication: Keys for Understanding Emotional and Social Communication from an Evolutionary Perspective
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Identification of Mutant Genes and Introgressed Tiger Salamander
www.nature.com/scientificreports OPEN Identification of Mutant Genes and Introgressed Tiger Salamander DNA in the Laboratory Axolotl, Received: 13 October 2016 Accepted: 19 December 2016 Ambystoma mexicanum Published: xx xx xxxx M. Ryan Woodcock1, Jennifer Vaughn-Wolfe1, Alexandra Elias2, D. Kevin Kump1, Katharina Denise Kendall1,5, Nataliya Timoshevskaya1, Vladimir Timoshevskiy1, Dustin W. Perry3, Jeramiah J. Smith1, Jessica E. Spiewak4, David M. Parichy4,6 & S. Randal Voss1 The molecular genetic toolkit of the Mexican axolotl, a classic model organism, has matured to the point where it is now possible to identify genes for mutant phenotypes. We used a positional cloning– candidate gene approach to identify molecular bases for two historic axolotl pigment phenotypes: white and albino. White (d/d) mutants have defects in pigment cell morphogenesis and differentiation, whereas albino (a/a) mutants lack melanin. We identified in white mutants a transcriptional defect in endothelin 3 (edn3), encoding a peptide factor that promotes pigment cell migration and differentiation in other vertebrates. Transgenic restoration of Edn3 expression rescued the homozygous white mutant phenotype. We mapped the albino locus to tyrosinase (tyr) and identified polymorphisms shared between the albino allele (tyra) and tyr alleles in a Minnesota population of tiger salamanders from which the albino trait was introgressed. tyra has a 142 bp deletion and similar engineered alleles recapitulated the albino phenotype. Finally, we show that historical introgression of tyra significantly altered genomic composition of the laboratory axolotl, yielding a distinct, hybrid strain of ambystomatid salamander. Our results demonstrate the feasibility of identifying genes for traits in the laboratory Mexican axolotl. The Mexican axolotl (Ambystoma mexicanum) is the primary salamander model in biological research. -
2009 Universities Across the Country
LIFE IN HALE : A Few Words from the Chair... Volume VIII As many of you may know, the recent national economic downturn has severely affected many state Summer 2009 universities across the country. Ironically, CU has been spared the worst effects because it receives only 9% of its annual budget from the State of Colorado. This reminds us how important student tui- tion, external research grants, and private contributions are for the future of Anthropology at CU Boulder. Fortunately, the department continues to enjoy high enrollments, active research agendas, and generous support from its alumni. The major philanthropic gifts we have received from Gregg Goldstein and Tom Lennon have made an especially important impact this year by providing our graduate students with fellowship and fieldwork support. If you are interested in exploring the op- tions for making an endowed donation or a legacy bequest to sustain the future of Colorado anthro- pology, I would be happy to discuss this with you. rooms and corridors of Hale. Meanwhile, it is high summer in the Rockies, and Hope you will find this edition at least 50% of our faculty and grad students are of CU Anthropology Press presently “in the field” in various parts of the intriguing and informative as world collecting data for their research projects, we make the transition from while our three-person departmental staff make paper & print to on-line web- preparations for the Fall 2009 semester. We will based publication. Please be joined by two new faculty colleagues (see send us your latest news so story below) and a fresh cohort of graduate and that we can share your sto- Dennis McGilvray undergraduate students to enliven the class- ries and stay in touch. -
The Evolution of Animal Domestication
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/266740619 The Evolution of Animal Domestication Article in Annual Review of Ecology Evolution and Systematics · October 2014 DOI: 10.1146/annurev-ecolsys-120213-091620 CITATIONS READS 179 3,162 2 authors: Greger Larson Dorian Q Fuller University of Oxford University College London 196 PUBLICATIONS 6,523 CITATIONS 322 PUBLICATIONS 12,021 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Dog Domestication View project Rwandan Archaeology View project All content following this page was uploaded by Dorian Q Fuller on 12 October 2014. The user has requested enhancement of the downloaded file. ES45CH06-Larson ARI 16 September 2014 11:18 V I E E W R S I E N C N A D V A The Evolution of Animal Domestication Greger Larson1 and Dorian Q. Fuller2 1Durham Evolution and Ancient DNA, Department of Archaeology, Durham University, Durham, DH1 3LE, United Kingdom; email: [email protected] 2Institute of Archaeology, University College London, London WC1H 0PY, United Kingdom Annu. Rev. Ecol. Evol. Syst. 2014. 66:115–36 Keywords The Annual Review of Ecology, Evolution, and archaeology, genetics, livestock, introgression, selection, agriculture Systematics is online at ecolsys.annualreviews.org This article’s doi: Abstract 10.1146/annurev-ecolsys-120213-091620 The domestication of plants and animals over the past 11,500 years has Copyright c 2014 by Annual Reviews. had a significant effect not just on the domesticated taxa but also on human All rights reserved evolution and on the biosphere as a whole. -
Archaeological Central American Maize Genomes Suggest Ancient Gene Flow from South America
Archaeological Central American maize genomes suggest ancient gene flow from South America Logan Kistlera,1, Heather B. Thakarb, Amber M. VanDerwarkerc, Alejandra Domicd,e, Anders Bergströmf, Richard J. Georgec, Thomas K. Harperd, Robin G. Allabyg, Kenneth Hirthd, and Douglas J. Kennettc,1 aDepartment of Anthropology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20560; bDepartment of Anthropology, Texas A&M University, College Station, TX 77843; cDepartment of Anthropology, University of California, Santa Barbara, CA 93106; dDepartment of Anthropology, The Pennsylvania State University, University Park, PA 16802; eDepartment of Geosciences, The Pennsylvania State University, University Park, PA 16802; fAncient Genomics Laboratory, The Francis Crick Institute, NW1 1AT London, United Kingdom; and gSchool of Life Sciences, University of Warwick, CV4 7AL Coventry, United Kingdom Edited by David L. Lentz, University of Cincinnati, Cincinnati, OH, and accepted by Editorial Board Member Elsa M. Redmond November 3, 2020 (received for review July 24, 2020) Maize (Zea mays ssp. mays) domestication began in southwestern 16). However, precolonial backflow of divergent maize varieties Mexico ∼9,000 calendar years before present (cal. BP) and humans into Central and Mesoamerica during the last 9,000 y remains dispersed this important grain to South America by at least 7,000 understudied, and could have ramifications for the history of cal. BP as a partial domesticate. South America served as a second- maize as a staple in the region. ary improvement center where the domestication syndrome be- Morphological evidence from ancient maize found in ar- came fixed and new lineages emerged in parallel with similar chaeological sites combined with DNA data confirms a complex processes in Mesoamerica. -
The Origins of Chordate Larvae Donald I Williamson* Marine Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom
lopmen ve ta e l B Williamson, Cell Dev Biol 2012, 1:1 D io & l l o l g DOI: 10.4172/2168-9296.1000101 e y C Cell & Developmental Biology ISSN: 2168-9296 Research Article Open Access The Origins of Chordate Larvae Donald I Williamson* Marine Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom Abstract The larval transfer hypothesis states that larvae originated as adults in other taxa and their genomes were transferred by hybridization. It contests the view that larvae and corresponding adults evolved from common ancestors. The present paper reviews the life histories of chordates, and it interprets them in terms of the larval transfer hypothesis. It is the first paper to apply the hypothesis to craniates. I claim that the larvae of tunicates were acquired from adult larvaceans, the larvae of lampreys from adult cephalochordates, the larvae of lungfishes from adult craniate tadpoles, and the larvae of ray-finned fishes from other ray-finned fishes in different families. The occurrence of larvae in some fishes and their absence in others is correlated with reproductive behavior. Adult amphibians evolved from adult fishes, but larval amphibians did not evolve from either adult or larval fishes. I submit that [1] early amphibians had no larvae and that several families of urodeles and one subfamily of anurans have retained direct development, [2] the tadpole larvae of anurans and urodeles were acquired separately from different Mesozoic adult tadpoles, and [3] the post-tadpole larvae of salamanders were acquired from adults of other urodeles. Reptiles, birds and mammals probably evolved from amphibians that never acquired larvae. -
The History of Farm Foxes Undermines the Animal Domestication Syndrome, Trends in Ecology & Evolution (2019)
Please cite this article in press as: Lord et al., The History of Farm Foxes Undermines the Animal Domestication Syndrome, Trends in Ecology & Evolution (2019), https://doi.org/10.1016/j.tree.2019.10.011 Trends in Ecology & Evolution Opinion The History of Farm Foxes Undermines the Animal Domestication Syndrome Kathryn A. Lord,1,2 Greger Larson,3,@ Raymond P. Coppinger,4,6 and Elinor K. Karlsson1,2,5,@,* The Russian Farm-Fox Experiment is the best known experimental study in animal domestication. Highlights By subjecting a population of foxes to selection for tameness alone, Dimitry Belyaev generated The ‘domestication syndrome’ has foxes that possessed a suite of characteristics that mimicked those found across domesticated been a central focus of research species. This ‘domestication syndrome’ has been a central focus of research into the biological into the biological processes un- pathways modified during domestication. Here, we chart the origins of Belyaev’s foxes in derlying domestication. The eastern Canada and critically assess the appearance of domestication syndrome traits across an- Russian Farm-Fox Experiment was imal domesticates. Our results suggest that both the conclusions of the Farm-Fox Experiment the first to test whether there is a and the ubiquity of domestication syndrome have been overstated. To understand the process causal relationship between selec- tion for tameness and the domes- of domestication requires a more comprehensive approach focused on essential adaptations to tication syndrome. human-modified environments. Historical records and genetic The Origins of Domestication Syndrome analysis show that the foxes used in The domestication syndrome describes a suite of behavioral and morphological characteristics the Farm-Fox Experiment origi- consistently observed in domesticated populations. -
Amphibiaweb's Illustrated Amphibians of the Earth
AmphibiaWeb's Illustrated Amphibians of the Earth Created and Illustrated by the 2020-2021 AmphibiaWeb URAP Team: Alice Drozd, Arjun Mehta, Ash Reining, Kira Wiesinger, and Ann T. Chang This introduction to amphibians was written by University of California, Berkeley AmphibiaWeb Undergraduate Research Apprentices for people who love amphibians. Thank you to the many AmphibiaWeb apprentices over the last 21 years for their efforts. Edited by members of the AmphibiaWeb Steering Committee CC BY-NC-SA 2 Dedicated in loving memory of David B. Wake Founding Director of AmphibiaWeb (8 June 1936 - 29 April 2021) Dave Wake was a dedicated amphibian biologist who mentored and educated countless people. With the launch of AmphibiaWeb in 2000, Dave sought to bring the conservation science and basic fact-based biology of all amphibians to a single place where everyone could access the information freely. Until his last day, David remained a tirelessly dedicated scientist and ally of the amphibians of the world. 3 Table of Contents What are Amphibians? Their Characteristics ...................................................................................... 7 Orders of Amphibians.................................................................................... 7 Where are Amphibians? Where are Amphibians? ............................................................................... 9 What are Bioregions? ..................................................................................10 Conservation of Amphibians Why Save Amphibians? ............................................................................. -
Messages from Salzburg
Messages from Salzburg SEH 19th European Congress of Herpetology Dr Tony Gent SEHCC Chair Trondheim October 2017 RACE Foundation Conservation Committee SEH Congress & OGM • University of Salzburg, Department of Ecology and Evolution • The Congress ran from: Monday 18th September to Friday 22nd September • Two parallel sessions, plus plenary lectures each day (book of Abstracts available) • Session on diseases (Thursday) • Practical conservation session (Friday) • SEHCC meeting (Tuesday) • OGM saw new Council members including new president (Mathieu Denoël) • I identify some key messages/ topics from the conference that have a bearing on conservation • Issues around pathogens/ disease, eg. Bsal, not included as dealt with elsewhere Genetics & phylogeography Splitting & merging of taxa giving increasingly fluid taxonomic positons & status: do we need to develop new guidelines to keep up with changes: Proteus anguinus - now perhaps up to 8-10 species recognised Olm Proteus anguinus in very restricted geographic area: Italy- Montenegro http://www.animalspot.net/wp- Vipera darevski & V. eriwanensis probably just a single species : content/uploads/2012/01/Olm-Photos.jpg upgrades status as now occupy larger range. Importance of different ‘forms’ e.g. paedomorphic newt populations Phylogeography helps identify geographic areas of particular significance from an evolutionary point of view; e.g. Carpathean Basin. Does this warrant increased conservation interest/ effort to protect these area? Darevsky’s viper Vipera darevskii http://www.arkive.org/darevskys-viper/vipera- -
September 2017 N°17
ISSN 2499-1341 EXPRESSION quarterly e-journal of atelier in cooperation with uispp-cisenp. international scientific commission on the intellectual and spiritual expressions of non-literate peoples N°17 September 2017 CULT SITES AND ART Anthropomorphic face on the entrance slab of a circular ceremonial structure from Har Karkom, Negev desert, Israel (Pre-pottery Neolithic site BK 608). EDITORIAL NOTES accompany them. What echoes accompanied CULT SITES the paintings in the prehistoric caves? What performances, if any, were taking place in front AND ART of the decorated rock surfaces? The visual art stresses myths, mythical beings Walking along a narrow trail, on the edge of and/or historical facts, which are related to the a steep valley in the middle of a deep forest, cult and to the sanctity of the site. It is the visual we suddenly heard noises of human presen- memory that justifes the function of the site. ce, voices that were neither speeches nor son- Was it the same in prehistoric times? In front of gs, something in between. We reached a cave where a number of people were assembled in rock art sites, in the Camonica Valley, Italy, or a corner and an old bearded man was standing in Kakadu in Arnhem Land, Australia, or in the on an upper step of the rock talking ... perhaps Drakensberg caves, South Africa, or in the Al- talking, perhaps declaiming, perhaps singing, tamira cave, Spain, the presence of prehistoric but not to the people below. He was talking or art awakens a sense of sacredness, we feel that performing or praying in front of a white rock these were and are special places but .. -
Axolotl Care Compiled by Dayna Willems, DVM
Axolotl Care Compiled by Dayna Willems, DVM Brief Description Axolotls (Ambystoma mexicanum) are a Mexican species of aquatic salamander that has rapidly come into the pet trade due to their hardy nature and unusual appearance. Axolotls are amphibians meaning that they do go through several stages of metamorphosis before reaching their adult form. Axolotls are unusual in that their adult/reproductive stage is the same as the juvenile aquatic stage. This is called neoteny and is often considered a “backward” step in evolution. Axolotls are closely related to Tiger Salamanders which do eventually morph into a terrestrial form. It should be noted that under extreme stress, an axolotl may morph into a terrestrial form, but their life is significantly shortened. Being amphibians, axolotls do not tolerate handling well and must stay in the water to breathe. They have sensitive skin and can absorb toxins from the water or your skin. Should you need to transport your axolotl or move it for tank maintenance, do not use a net. Nets can cause abrasions in your axolotl’s sensitive skin or damage the gills. Instead use a plastic cup to scoop your axolotl out of the enclosure. Lifespan Providing the correct care to your axolotl will ensure a long life. Average life expectancy is around 10 years, but reports have been found of axolotls living into their 20’s. Their adult size is around 10 to 12 inches; which they typically reach within the first year of their life. Sexing Axolotls reach sexual maturity when they are around 6-8 inches long. -
Hered 445 Master..Hered 445 .. Page648
Heredity 81 (1998) 648–658 Received 19 March 1998, accepted 15 June 1998 Genetic analysis of the domestication syndrome in pearl millet (Pennisetum glaucum L., Poaceae): inheritance of the major characters V. PONCET*%, F. LAMY%, J. ENJALBERT^, H. JOLY§, A. SARR% & T. ROBERT% %Laboratoire d’Evolution et Syst´ematique, Universit´e Paris XI, Bˆat. 362, F-91405 Orsay Cedex, France, ^Station de G´en´etique V´eg´etale, Ferme du Moulon, F-91190 Gif sur Yvette, France and §CIRAD-Forˆet, campus international de Baillarguet, BP 5035, F-34032 Montpellier Cedex 1, France The inheritance of domestication traits distinguishing pearl millet (Pennisetum glaucum) from its wild relatives (P. mollissimum) was assessed in F2 progenies derived from a cross between a typical landrace of pearl millet and a wild ecotype. Despite a high level of recombination between the two genomes, the existence of preferential associations between some characters was demonstrated, leading, in particular, to cultivated-like phenotypes. Traits determining spikelet structure showed simple Mendelian inheritance. Moreover, the genes encoding these traits mapped in a linkage group where quantitative trait loci for spike size and tillering habit were found. This linkage group could correspond to one of the two chromosome segments that have already been shown to be involved in the variation for spikelet structure in progenies from several cultivatedÅwild crosses. A synthetic map of these two regions is given. The evolutionary significance of this genomic organization in relation to the domestication process is discussed, as well as its potential use for pearl millet genetic resources enhancement. Keywords: domestication, genetic map, pearl millet, Pennisetum glaucum. -
Olm, Proteus Anguinus
Olm, Proteus anguinus Compiler: Jelić, D. Contributors: Jelić, D.; Jalžić, B.; Kletečki, E.; Koller, K.; Jalžić, V.; Kovač-Konrad, P. Suggested citation: Jelić, D. (2014): A survival blueprint for the olm, Proteus anguinus. Croatian Institute for Biodiversity, Croatian Herpetological Society, Zagreb, Croatia. 1. STATUS REVIEW 1.1 Taxonomy: Chordata > Amphibia > Caudata > Proteidae > Proteus > anguinus Most populations are assigned to the subterranean subspecies Proteus anguinus anguinus. Unlike the nominate form, the genetically similar subspecies P.a. parkelj from Bela Krajina in Slovenia is pigmented and might represent a distinct species, although a recent genetic study suggests that the two subspecies are poorly differentiated at the molecular level and may not even warrant subspecies status (Goricki and Trontelj 2006). Isolated populations from Istria peninsula in Croatia are genetically and morphologically differentiated as separate unnamed taxon (Goricki and Trontelj 2006). Croatian: Čovječja ribica English: Olm, Proteus, Cave salamander French: Protee Slovenian: Čovješka ribica, močeril German: Grottenolm 1.2 Distribution and population status: 1.2.1 Global distribution: Country Population Distribution Population trend Notes estimate (plus references) (plus references) Croatia 68 localities (Jelić 3 separate Decline has been et al. 2012) subpopulations: observed through Istria, Gorski devastation of kotar and several cave Dalmatia systems in all regions (Jelić et al. 2012) Italy 29 localities (Sket Just the A decline has been 1997) easternmost observed in the region around population of Trieste, Gradisce Goriza (Italy) (Gasc and Monfalcone et al. 1997). Slovenia 158 localities 4 populations A decline has been (Sket 1997) distributed from observed in the Vipava river in the population in west (border with Postojna (Slovenia) Italy) to Kupa (Gasc et al.