X-Linked Disorders with Cerebellar Dysgenesis Ginevra Zanni* and Enrico S Bertini
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Reframing Psychiatry for Precision Medicine
Reframing Psychiatry for Precision Medicine Elizabeth B Torres 1,2,3* 1 Rutgers University Department of Psychology; [email protected] 2 Rutgers University Center for Cognitive Science (RUCCS) 3 Rutgers University Computer Science, Center for Biomedicine Imaging and Modelling (CBIM) * Correspondence: [email protected]; Tel.: (011) +858-445-8909 (E.B.T) Supplementary Material Sample Psychological criteria that sidelines sensory motor issues in autism: The ADOS-2 manual [1, 2], under the “Guidelines for Selecting a Module” section states (emphasis added): “Note that the ADOS-2 was developed for and standardized using populations of children and adults without significant sensory and motor impairments. Standardized use of any ADOS-2 module presumes that the individual can walk independently and is free of visual or hearing impairments that could potentially interfere with use of the materials or participation in specific tasks.” Sample Psychiatric criteria from the DSM-5 [3] that does not include sensory-motor issues: A. Persistent deficits in social communication and social interaction across multiple contexts, as manifested by the following, currently or by history (examples are illustrative, not exhaustive, see text): 1. Deficits in social-emotional reciprocity, ranging, for example, from abnormal social approach and failure of normal back-and-forth conversation; to reduced sharing of interests, emotions, or affect; to failure to initiate or respond to social interactions. 2. Deficits in nonverbal communicative behaviors used for social interaction, ranging, for example, from poorly integrated verbal and nonverbal communication; to abnormalities in eye contact and body language or deficits in understanding and use of gestures; to a total lack of facial expressions and nonverbal communication. -
MASA Syndrome in Twin Brothers: Case Report of Sixteen-Year Clinical Follow Up
Paediatr Croat. 2014;58:286-90 PRIKAZ BOLESNIKA / CASE REPORT www.paedcro.com http://dx.doi.org/10.13112/PC.2014.50 MASA syndrome in twin brothers: case report of sixteen-year clinical follow up Matilda Kovač Šižgorić1, Zlatko Sabol1, Filip Sabol2, Tonći Grmoja3, Svjetlana Bela Klancir1, Zdravka Gjergja1, Ljiljana Kipke Sabol1 MASA syndrome (OMIM 303350) is a rare X-linked recessive neurologic disorder, also called CRASH syndrome, spastic paraplegia 1 and Gareis-Mason syndrome. The acronym MASA describes four major signs: Mental retardation, Aphasia, Shuffl ing gait and Adducted thumbs. A more suitable name for this syndrome is L1 syndrome because the disorder has been associated with mutations in the neuronal cell adhesion molecule L1 (L1CAM) gene. The syndrome has severe symptoms in males, while females are carriers because only one X chromosome is aff ected. The aim of this report is to show similarities and diff erences in clinical manifestations between twins with the L1CAM gene mutation and to emphasize the importance of genetic counseling. Our patients were dizygotic twins born prematurely at 35 weeks of gestation. Pregnancy was complicated with early bleeding and gestational diabetes. Immediately after birth, hypertonia of lower extremities was observed in both twins. Sixteen-year clinical follow up showed spastic paraparetic form with shuffl ing gait, clumsiness, delayed speech development, lower intellectual functioning at the level of mild to moderate mental retarda- tion, primary nocturnal enuresis, behavioral and sleep disorder (more pronounced in the second twin). Magnetic resonance imaging of the brain showed complete agenesis of the corpus callosum, complete lack of the anterior commissure, and internal hydrocephalus. -
Supplementary Table 1: Adhesion Genes Data Set
Supplementary Table 1: Adhesion genes data set PROBE Entrez Gene ID Celera Gene ID Gene_Symbol Gene_Name 160832 1 hCG201364.3 A1BG alpha-1-B glycoprotein 223658 1 hCG201364.3 A1BG alpha-1-B glycoprotein 212988 102 hCG40040.3 ADAM10 ADAM metallopeptidase domain 10 133411 4185 hCG28232.2 ADAM11 ADAM metallopeptidase domain 11 110695 8038 hCG40937.4 ADAM12 ADAM metallopeptidase domain 12 (meltrin alpha) 195222 8038 hCG40937.4 ADAM12 ADAM metallopeptidase domain 12 (meltrin alpha) 165344 8751 hCG20021.3 ADAM15 ADAM metallopeptidase domain 15 (metargidin) 189065 6868 null ADAM17 ADAM metallopeptidase domain 17 (tumor necrosis factor, alpha, converting enzyme) 108119 8728 hCG15398.4 ADAM19 ADAM metallopeptidase domain 19 (meltrin beta) 117763 8748 hCG20675.3 ADAM20 ADAM metallopeptidase domain 20 126448 8747 hCG1785634.2 ADAM21 ADAM metallopeptidase domain 21 208981 8747 hCG1785634.2|hCG2042897 ADAM21 ADAM metallopeptidase domain 21 180903 53616 hCG17212.4 ADAM22 ADAM metallopeptidase domain 22 177272 8745 hCG1811623.1 ADAM23 ADAM metallopeptidase domain 23 102384 10863 hCG1818505.1 ADAM28 ADAM metallopeptidase domain 28 119968 11086 hCG1786734.2 ADAM29 ADAM metallopeptidase domain 29 205542 11085 hCG1997196.1 ADAM30 ADAM metallopeptidase domain 30 148417 80332 hCG39255.4 ADAM33 ADAM metallopeptidase domain 33 140492 8756 hCG1789002.2 ADAM7 ADAM metallopeptidase domain 7 122603 101 hCG1816947.1 ADAM8 ADAM metallopeptidase domain 8 183965 8754 hCG1996391 ADAM9 ADAM metallopeptidase domain 9 (meltrin gamma) 129974 27299 hCG15447.3 ADAMDEC1 ADAM-like, -
Autosomal Recessive Ataxias and with the Early-Onset Parkinson’S Disease That We Identified Here As Overlapping with the SFARI Autism Gene
Roadmap to Help Develop Personalized Targeted Treatments for Autism as a Disorder of the Nervous Systems Elizabeth B Torres 1,2,3* 1 Rutgers University Department of Psychology; [email protected] 2 Rutgers University Center for Cognitive Science (RUCCS) 3 Rutgers University Computer Science, Center for Biomedicine Imaging and Modelling (CBIM) * Correspondence: [email protected]; Tel.: (011) +858-445-8909 (E.B.T) 1 | P a g e Supplementary Material Sample Psychological criteria that sidelines sensory motor issues in autism: The ADOS-2 manual [1, 2], under the “Guidelines for Selecting a Module” section states (emphasis added): “Note that the ADOS-2 was developed for and standardized using populations of children and adults without significant sensory and motor impairments. Standardized use of any ADOS-2 module presumes that the individual can walk independently and is free of visual or hearing impairments that could potentially interfere with use of the materials or participation in specific tasks.” Sample Psychiatric criteria from the DSM-5 [3] that does not include sensory-motor issues: A. Persistent deficits in social communication and social interaction across multiple contexts, as manifested by the following, currently or by history (examples are illustrative, not exhaustive, see text): 1. Deficits in social-emotional reciprocity, ranging, for example, from abnormal social approach and failure of normal back-and-forth conversation; to reduced sharing of interests, emotions, or affect; to failure to initiate or respond to social interactions. 2. Deficits in nonverbal communicative behaviors used for social interaction, ranging, for example, from poorly integrated verbal and nonverbal communication; to abnormalities in eye contact and body language or deficits in understanding and use of gestures; to a total lack of facial expressions and nonverbal communication. -
The Hematological Complications of Alcoholism
The Hematological Complications of Alcoholism HAROLD S. BALLARD, M.D. Alcohol has numerous adverse effects on the various types of blood cells and their functions. For example, heavy alcohol consumption can cause generalized suppression of blood cell production and the production of structurally abnormal blood cell precursors that cannot mature into functional cells. Alcoholics frequently have defective red blood cells that are destroyed prematurely, possibly resulting in anemia. Alcohol also interferes with the production and function of white blood cells, especially those that defend the body against invading bacteria. Consequently, alcoholics frequently suffer from bacterial infections. Finally, alcohol adversely affects the platelets and other components of the blood-clotting system. Heavy alcohol consumption thus may increase the drinker’s risk of suffering a stroke. KEY WORDS: adverse drug effect; AODE (alcohol and other drug effects); blood function; cell growth and differentiation; erythrocytes; leukocytes; platelets; plasma proteins; bone marrow; anemia; blood coagulation; thrombocytopenia; fibrinolysis; macrophage; monocyte; stroke; bacterial disease; literature review eople who abuse alcohol1 are at both direct and indirect. The direct in the number and function of WBC’s risk for numerous alcohol-related consequences of excessive alcohol increases the drinker’s risk of serious Pmedical complications, includ- consumption include toxic effects on infection, and impaired platelet produc- ing those affecting the blood (i.e., the the bone marrow; the blood cell pre- tion and function interfere with blood cursors; and the mature red blood blood cells as well as proteins present clotting, leading to symptoms ranging in the blood plasma) and the bone cells (RBC’s), white blood cells from a simple nosebleed to bleeding in marrow, where the blood cells are (WBC’s), and platelets. -
Hirschsprung Disease in an Infant with L1 Syndrome
Hirschsprung Disease in an Infant with L1 Syndrome: Report of a New Case and a Novel L1CAM Variant Teresa Andreone1 1Saint Louis University Care - The Physicians of Saint Louis University October 27, 2020 Abstract L1 syndrome is an X-linked disorder manifesting with congenital hydrocephalus, adducted thumbs and spasticity. There are rare cases of L1 syndrome and coincident Hirschsprung disease, with mutations in the L1CAM gene thought to underlie both. We present a novel pathogenic L1CAM variant in someone with L1 syndrome and Hirschsprung disease. Introduction The L1CAM gene encodes the membrane glycoprotein L1CAM, a calcium-independent cellular adhesion molecule involved in neuronal development. The L1CAM cell adhesion molecule is found on the X chromo- some in humans (and other mammals) and has a 1253 amino acid protein sequence. The extracellular portion is comprised of six immunoglobulin domains followed by five fibronectin type III domains which are con- nected to a small intracellular domain by a transmembrane helix (Figure 1). Mutations in theL1CAM gene cause L1 syndrome, which encompasses a spectrum of disease that includes four major X-linked conditions: X-linked congenital hydrocephalus due to stenosis of the aqueduct of Sylvius (HSAS; OMIM #307000); men- tal retardation, aphasia, shuffling gait and adducted thumbs syndrome (MASA; OMIM #303350); X-linked complicated hereditary spastic paraplegia type 1 (SPG1; OMIM#303350); and X-linked complicated agene- sis of the corpus callosum (OMIM #304100)1. More than 220 disease-causing variants in the L1CAM gene have been identified as causing the four major phenotypes of L1 syndrome2. Additionally, there are reports suggesting that additional mutations in L1CAM can cause mild behavioral and intellectual impairment3. -
University of Groningen Genetics of L1 Syndrome Vos, Yvonne Johanna
University of Groningen Genetics of L1 syndrome Vos, Yvonne Johanna IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below. Document Version Publisher's PDF, also known as Version of record Publication date: 2010 Link to publication in University of Groningen/UMCG research database Citation for published version (APA): Vos, Y. J. (2010). Genetics of L1 syndrome. [S.n.]. Copyright Other than for strictly personal use, it is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), unless the work is under an open content license (like Creative Commons). Take-down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Downloaded from the University of Groningen/UMCG research database (Pure): http://www.rug.nl/research/portal. For technical reasons the number of authors shown on this cover page is limited to 10 maximum. Download date: 26-09-2021 Genetics Ll Syndr Yvonne Vos , ' Genetics of Ll syndrome Yvonne Johanna Vos Vos, Yvonne J Genetics of Ll syndrome Proefschrift Groningen ISBN: 978-90-367-4471-3 © Copyright 2010 Y.J. Vos All rights are reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmittedin any form or by any means, without permission of the author. Cover: Bob Vos Lay-out: Helga de Graaf, Studio Eye Candy, Groningen (www.proefschrift.info) Printed by lpskamp Drukkers, Enschede Stellingen behorende bij het proefschrift Genetics of Ll syndrome -·-····· ---· ·· -�--;. -
Aneuploidy: Using Genetic Instability to Preserve a Haploid Genome?
Health Science Campus FINAL APPROVAL OF DISSERTATION Doctor of Philosophy in Biomedical Science (Cancer Biology) Aneuploidy: Using genetic instability to preserve a haploid genome? Submitted by: Ramona Ramdath In partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biomedical Science Examination Committee Signature/Date Major Advisor: David Allison, M.D., Ph.D. Academic James Trempe, Ph.D. Advisory Committee: David Giovanucci, Ph.D. Randall Ruch, Ph.D. Ronald Mellgren, Ph.D. Senior Associate Dean College of Graduate Studies Michael S. Bisesi, Ph.D. Date of Defense: April 10, 2009 Aneuploidy: Using genetic instability to preserve a haploid genome? Ramona Ramdath University of Toledo, Health Science Campus 2009 Dedication I dedicate this dissertation to my grandfather who died of lung cancer two years ago, but who always instilled in us the value and importance of education. And to my mom and sister, both of whom have been pillars of support and stimulating conversations. To my sister, Rehanna, especially- I hope this inspires you to achieve all that you want to in life, academically and otherwise. ii Acknowledgements As we go through these academic journeys, there are so many along the way that make an impact not only on our work, but on our lives as well, and I would like to say a heartfelt thank you to all of those people: My Committee members- Dr. James Trempe, Dr. David Giovanucchi, Dr. Ronald Mellgren and Dr. Randall Ruch for their guidance, suggestions, support and confidence in me. My major advisor- Dr. David Allison, for his constructive criticism and positive reinforcement. -
A Novel Intragenic Deletion in OPHN1 in a Japanese Patient with Dandy
Iida et al. Human Genome Variation (2019) 6:1 https://doi.org/10.1038/s41439-018-0032-8 Human Genome Variation DATA REPORT Open Access A novel intragenic deletion in OPHN1 in a Japanese patient with Dandy-Walker malformation Aritoshi Iida 1,EriTakeshita2, Shunichi Kosugi3, Yoichiro Kamatani 3,4, Yukihide Momozawa5,MichiakiKubo6, Eiji Nakagawa2,KenjiKurosawa7, Ken Inoue8 and Yu-ichi Goto8,9 Abstract Dandy-Walker malformation (DWM) is a rare congenital malformation defined by hypoplasia of the cerebellar vermis and cystic dilatation of the fourth ventricle. Oligophrenin-1 is mutated in X-linked intellectual disability with or without cerebellar hypoplasia. Here, we report a Japanese DWM patient carrying a novel intragenic 13.5-kb deletion in OPHN1 ranging from exon 11–15. This is the first report of an OPHN1 deletion in a Japanese patient with DWM. Dandy-Walker malformation (DWM) is a OPHN1 encodes oligophrenin 1, which is a Rho-GTPase midbrain–hindbrain malformation characterized by cer- activating protein involved in synaptic morphogenesis and ebellar vermis hypoplasia and dysplasia, cystic dilatation functions through the regulation of the G protein cycle5. of the fourth ventricle and an elevated torcula, often OPHN1 (NM_002547) consists of 25 exons and spans 1 1234567890():,; 1234567890():,; 1234567890():,; 1234567890():,; accompanied by hydrocephalus . The frequency of DWM ~391 kb on chromosome Xq12 (UCSC Genome Browser: in the U.S. is ~1 in 25,000–35,000 liveborn infants https://genome.ucsc.edu). Oligophrein 1 is an 802 amino- (https://rarediseases.org/rare-diseases/dandy-walker- acid protein harboring multiple domains, such as a BAR malformation/). DWM becomes apparent in early infancy, domain, PH domain, Rho-GAP domain, and three is complicated by macrocephaly, and occurs along with proline-rich sequences6. -
Iron Deficiency and the Anemia of Chronic Disease
Thomas G. DeLoughery, MD MACP FAWM Professor of Medicine, Pathology, and Pediatrics Oregon Health Sciences University Portland, Oregon [email protected] IRON DEFICIENCY AND THE ANEMIA OF CHRONIC DISEASE SIGNIFICANCE Lack of iron and the anemia of chronic disease are the most common causes of anemia in the world. The majority of pre-menopausal women will have some element of iron deficiency. The first clue to many GI cancers and other diseases is iron loss. Finally, iron deficiency is one of the most treatable medical disorders of the elderly. IRON METABOLISM It is crucial to understand normal iron metabolism to understand iron deficiency and the anemia of chronic disease. Iron in food is largely in ferric form (Fe+++ ) which is reduced by stomach acid to the ferrous form (Fe++). In the jejunum two receptors on the mucosal cells absorb iron. The one for heme-iron (heme iron receptor) is very avid for heme-bound iron (absorbs 30-40%). The other receptor - divalent metal transporter (DMT1) - takes up inorganic iron but is less efficient (1-10%). Iron is exported from the enterocyte via ferroportin and is then delivered to the transferrin receptor (TfR) and then to plasma transferrin. Transferrin is the main transport molecule for iron. Transferrin can deliver iron to the marrow for the use in RBC production or to the liver for storage in ferritin. Transferrin binds to the TfR on the cell and iron is delivered either for use in hemoglobin synthesis or storage. Iron that is contained in hemoglobin in senescent red cells is recycled by binding to ferritin in the macrophage and is transferred to transferrin for recycling. -
Characterization of Intellectual Disability and Autism Comorbidity Through Gene Panel Sequencing
bioRxiv preprint doi: https://doi.org/10.1101/545772; this version posted February 10, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Characterization of Intellectual disability and Autism comorbidity through gene panel sequencing Maria Cristina Aspromonte 1, 2, Mariagrazia Bellini 1, 2, Alessandra Gasparini 3, Marco Carraro 3, Elisa Bettella 1, 2, Roberta Polli 1, 2, Federica Cesca 1, 2, Stefania Bigoni 4, Stefania Boni 5, Ombretta Carlet 6, Susanna Negrin 6, Isabella Mammi 7, Donatella Milani 8 , Angela Peron 9, 10, Stefano Sartori 11, Irene Toldo 11, Fiorenza Soli 12, Licia Turolla 13, Franco Stanzial 14, Francesco Benedicenti 14, Cristina Marino-Buslje 15, Silvio C.E. Tosatto 3, 16, Alessandra Murgia 1, 2, Emanuela Leonardi 1, 2 1. Molecular Genetics of Neurodevelopment, Dept. of Woman and Child Health, University of Padova, Padova, Italy 2. Fondazione Istituto di Ricerca Pediatrica (IRP), Città della Speranza, Padova, Italy 3. Dept. of Biomedical Sciences, University of Padova, Padova, Italy 4. Medical Genetics Unit, Ospedale Universitario S. Anna, Ferrara, Italy 5. Medical Genetics Unit, S. Martino Hospital, Belluno, Italy 6. Child Neuropsychiatry Unit, IRCCS Eugenio Medea, Conegliano, Italy 7. Medical Genetics Unit, Dolo General Hospital, Venezia, Italy 8. Pediatric Highly Intensive Care Unit, Department of Pathophysiology and Transplantation, University of Milano, Fondazione IRCCS, Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy 9. Child Neuropsychiatry Unit, Epilepsy Center, Santi Paolo-Carlo Hospital, Dept. of Health Sciences, University of Milano, Milano, Italy 10. Department of Pediatrics, Division of Medical Genetics, University of Utah School of Medicine, Salt Lake City, UT, USA 11. -
The University of Chicago Genetic Services Laboratories
The University of Chicago Genetic Services Laboratories 5841 South Maryland Avenue, Room G701/MC0077, Chicago, IL 60637 Toll Free: 888.824.3637 | Local: 773.834.0555 | Fax: 773-702-9130 [email protected] | dnatesting.uchicago.edu | CLIA#: 14D0917593 | CAP#: 18827-49 QUICK GUIDE TO GENETIC TESTING TEST DISORDER CPT TAT COST Aceruloplasminemia testing CP sequencing 81406 4 weeks $2,200 Aceruloplasminemia CP deletion/duplication 81405 4 weeks $1,000 Albinism testing Albinism Sequencing Panel (20 genes sequencing)** 81407 8 weeks $3,500 Albinism Deletion/Duplication Panel (20 genes deletion/duplication analysis) 81407 6 weeks $2,500 Alstrom syndrome testing ALMS1 sequencing 81406 4 weeks $1,700 Alstrom syndrome ALMS1 deletion/duplication 81405 4 weeks $1,000 Alternating Hemiplegia of Childhood testing ATP1A3 sequencing Alternating hemiplegia of childhood 81406 4 weeks $2,025 Angelman syndrome MS-MLPA (detects methylation and deletions in 15q11- 81331 4 weeks $525 13) UPD 15 testing (requires samples from both parents 81402 4 weeks $540 also) Angelman syndrome Imprinting center deletion analysis 81403 4 weeks $450 UBE3A sequencing 81406 4 weeks $1,500 UBE3A deletion/duplication 81405 4 weeks $1,000 SLC9A6 sequencing 81406 4 weeks $1,500 X-linked Angelman-like syndrome SLC9A6 deletion/duplication 81405 4 weeks $1,000 Angelman Syndrome Tier 2 Panel ( MECP2,TCF4, SLC9A6 and UBE3A sequencing and 81479 4 weeks $4,400 deletion/duplication) Rett/Angelman Syndrome Sequencing Panel (21 genes sequencing)** 81407 8 weeks $4,400 Rett/Angelman