Does the Benthic Invertebrate Community Reflect Disturbances In
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Harmful Algae 91 (2020) 101587
Harmful Algae 91 (2020) 101587 Contents lists available at ScienceDirect Harmful Algae journal homepage: www.elsevier.com/locate/hal Review Progress and promise of omics for predicting the impacts of climate change T on harmful algal blooms Gwenn M.M. Hennona,c,*, Sonya T. Dyhrmana,b,* a Lamont-Doherty Earth Observatory, Columbia University, Palisades, NY, United States b Department of Earth and Environmental Sciences, Columbia University, New York, NY, United States c College of Fisheries and Ocean Sciences University of Alaska Fairbanks Fairbanks, AK, United States ARTICLE INFO ABSTRACT Keywords: Climate change is predicted to increase the severity and prevalence of harmful algal blooms (HABs). In the past Genomics twenty years, omics techniques such as genomics, transcriptomics, proteomics and metabolomics have trans- Transcriptomics formed that data landscape of many fields including the study of HABs. Advances in technology have facilitated Proteomics the creation of many publicly available omics datasets that are complementary and shed new light on the Metabolomics mechanisms of HAB formation and toxin production. Genomics have been used to reveal differences in toxicity Climate change and nutritional requirements, while transcriptomics and proteomics have been used to explore HAB species Phytoplankton Harmful algae responses to environmental stressors, and metabolomics can reveal mechanisms of allelopathy and toxicity. In Cyanobacteria this review, we explore how omics data may be leveraged to improve predictions of how climate change will impact HAB dynamics. We also highlight important gaps in our knowledge of HAB prediction, which include swimming behaviors, microbial interactions and evolution that can be addressed by future studies with omics tools. Lastly, we discuss approaches to incorporate current omics datasets into predictive numerical models that may enhance HAB prediction in a changing world. -
Diversity and Life-Cycle Analysis of Pacific Ocean Zooplankton by Video Microscopy and DNA Barcoding: Crustacea
Journal of Aquaculture & Marine Biology Research Article Open Access Diversity and life-cycle analysis of Pacific Ocean zooplankton by video microscopy and DNA barcoding: Crustacea Abstract Volume 10 Issue 3 - 2021 Determining the DNA sequencing of a small element in the mitochondrial DNA (DNA Peter Bryant,1 Timothy Arehart2 barcoding) makes it possible to easily identify individuals of different larval stages of 1Department of Developmental and Cell Biology, University of marine crustaceans without the need for laboratory rearing. It can also be used to construct California, USA taxonomic trees, although it is not yet clear to what extent this barcode-based taxonomy 2Crystal Cove Conservancy, Newport Coast, CA, USA reflects more traditional morphological or molecular taxonomy. Collections of zooplankton were made using conventional plankton nets in Newport Bay and the Pacific Ocean near Correspondence: Peter Bryant, Department of Newport Beach, California (Lat. 33.628342, Long. -117.927933) between May 2013 and Developmental and Cell Biology, University of California, USA, January 2020, and individual crustacean specimens were documented by video microscopy. Email Adult crustaceans were collected from solid substrates in the same areas. Specimens were preserved in ethanol and sent to the Canadian Centre for DNA Barcoding at the Received: June 03, 2021 | Published: July 26, 2021 University of Guelph, Ontario, Canada for sequencing of the COI DNA barcode. From 1042 specimens, 544 COI sequences were obtained falling into 199 Barcode Identification Numbers (BINs), of which 76 correspond to recognized species. For 15 species of decapods (Loxorhynchus grandis, Pelia tumida, Pugettia dalli, Metacarcinus anthonyi, Metacarcinus gracilis, Pachygrapsus crassipes, Pleuroncodes planipes, Lophopanopeus sp., Pinnixa franciscana, Pinnixa tubicola, Pagurus longicarpus, Petrolisthes cabrilloi, Portunus xantusii, Hemigrapsus oregonensis, Heptacarpus brevirostris), DNA barcoding allowed the matching of different life-cycle stages (zoea, megalops, adult). -
Biodiversity of Jamaican Mangrove Areas
BIODIVERSITY OF JAMAICAN MANGROVE AREAS Volume 7 Mangrove Biotypes VI: Common Fauna BY MONA WEBBER (PH.D) PROJECT FUNDED BY: 2 MANGROVE BIOTYPE VI: COMMON FAUNA CNIDARIA, ANNELIDA, CRUSTACEANS, MOLLUSCS & ECHINODERMS CONTENTS Page Introduction…………………………………………………………………… 4 List of fauna by habitat……………………………………………………….. 4 Cnidaria Aiptasia tagetes………………………………………………………… 6 Cassiopeia xamachana………………………………………………… 8 Annelida Sabellastarte magnifica………………………………………………… 10 Sabella sp………………………………………………………………. 11 Crustacea Calinectes exasperatus…………………………………………………. 12 Calinectes sapidus……………………………………………………… 13 Portunis sp……………………………………………………………… 13 Lupella forcepes………………………………………………………… 14 Persephone sp. …………………………………………………………. 15 Uca spp………………………………………………………………..... 16 Aratus pisoni……………………………………………………………. 17 Penaeus duorarum……………………………………………………… 18 Panulirus argus………………………………………………………… 19 Alphaeus sp…………………………………………………………….. 20 Mantis shrimp………………………………………………………….. 21 Balanus eberneus………………………………………………………. 22 Balanus amphitrite…………………………………………………….. 23 Chthamalus sp………………………………………………………….. 23 Mollusca Brachidontes exustus…………………………………………………… 24 Isognomon alatus………………………………………………………. 25 Crassostrea rhizophorae……………………………………………….. 26 Pinctada radiata………………………………………………………... 26 Plicatula gibosa………………………………………………………… 27 Martesia striata…………………………………………………………. 27 Perna viridis……………………………………………………………. 28 Trachycardium muricatum……………………………………..……… 30 Anadara chemnitzi………………………………………………...……. 30 Diplodonta punctata………………………………………………..…... 32 Dosinia sp…………………………………………………………..…. -
Lake Worth Lagoon
TABLE OF CONTENTS INTRODUCTION ................................................................................ 1 PURPOSE AND SIGNIFICANCE OF THE PARK ...................................... 1 Park Significance .............................................................................. 1 PURPOSE AND SCOPE OF THE PLAN ................................................... 2 MANAGEMENT PROGRAM OVERVIEW ................................................. 7 Management Authority and Responsibility ............................................ 7 Park Management Goals .................................................................... 8 Management Coordination ................................................................. 8 Public Participation ........................................................................... 9 Other Designations ........................................................................... 9 RESOURCE MANAGEMENT COMPONENT INTRODUCTION .............................................................................. 15 RESOURCE DESCRIPTION AND ASSESSMENT ................................... 15 Natural Resources .......................................................................... 16 Topography ............................................................................... 20 Geology .................................................................................... 21 Soils ......................................................................................... 21 Minerals ................................................................................... -
Copper Tolerance of Amphibalanus Amphitrite As Observed in Central Florida
Copper Tolerance of Amphibalanus amphitrite as Observed in Central Florida by Hannah Grace Brinson Bachelor of Science Oceanography Florida Institute of Technology 2015 A thesis submitted to Department of Ocean Engineering and Sciences at Florida Institute of Technology in partial fulfillment of the requirements for the degree of: Master of Science in Biological Oceanography Melbourne, Florida December 2017 We the undersigned committee hereby approve the attached thesis, “Copper Tolerance of Amphibalanus amphitrite as observed in Central Florida,” by Hannah Grace Brinson. ________________________________ Emily Ralston, Ph.D. Research Assistant Professor of Ocean Engineering and Sciences; Department of Ocean Engineering and Sciences Major Advisor ________________________________ Geoffrey Swain, Ph.D. Professor of Oceanography and Ocean Engineering; Department of Ocean Engineering and Sciences ________________________________ Kevin B. Johnson, Ph.D. Chair of Ocean Sciences; Professor of Oceanography and Environmental Sciences; Department of Ocean Engineering and Sciences ________________________________ Richard Aronson, Ph.D. Department Head and Professor of Biological Sciences; Department of Biological Sciences ________________________________ Dr. Marco Carvalho Dean of College of Engineering and Computing Abstract Copper Tolerance of Amphibalanus amphitrite as observed in Central Florida by Hannah Grace Brinson Major Advisor: Emily Ralston, Ph.D. Copper tolerance in the invasive barnacle Amphibalanus amphitrite has been observed in Florida -
Physiological Responses of Aureoumbra Lagunensis and Synechococcus Sp
Harmful Algae 6 (2007) 48–55 www.elsevier.com/locate/hal Physiological responses of Aureoumbra lagunensis and Synechococcus sp. to nitrogen addition in a mesocosm experiment Hudson R. DeYoe a,*, Edward J. Buskey b, Frank J. Jochem c a Department of Biology, University of Texas-Pan American, 1201 W. University Dr., Edinburg, TX 78541, United States b University of Texas Marine Science Institute, Port Aransas, TX 78373, United States c Florida International University, Marine Biology Program, North Miami, FL 33181, United States Received 7 March 2006; received in revised form 16 May 2006; accepted 6 June 2006 Abstract Aureoumbra lagunensis is the causative organism of the Texas brown tide and is notable because it dominated the Laguna Madre ecosystem from 1990 to 1997. This species is unusual because it has the highest known critical nitrogen to phosphorus ratio (N:P) for any microalgae ranging from 115 to 260, far higher than the 16N:1P Redfield ratio. Because of its high N:P ratio, Aureoumbra should be expected to respond to N additions that would not stimulate the growth of competitors having the Redfield ratio. To evaluate this prediction, a mesocosm experiment was performed in the Laguna Madre, a South Texas coastal lagoon, in which a mixed Aureoumbra–Synechococcus (a cyanobacterium) community was enclosed in 12 mesocosms and subjected to nitrogen addition (6 controls, 6 added ammonium) for 16 days. After day 4, added nitrogen did not significantly increase Aureoumbra specific growth rate but the alga retained dominance throughout the experiment (64–75% of total cell biovolume). In control mesocosms, Aureoumbra became less abundant during the first 4 days of the experiment but rebounded by the end of the experiment and was dominant over Synechococcus. -
HARMFUL ALGAL BLOOMS in COASTAL WATERS: Options for Prevention, Control and Mitigation
Science for Solutions A A Special Joint Report with the Decision Analysis Series No. 10 National Fish and Wildlife Foundation onald F. Boesch, Anderson, Rita A dra %: Shumway, . Tesf er, Terry E. February 1997 U.S. DEPARTMENT OF COMMERCE U.S. DEPARTMENT OF THE INTERIOR William M. Daley, Secretary Bruce Babbitt, Secretary The Decision Analysis Series has been established by NOAA's Coastal Ocean Program (COP) to present documents for coastal resource decision makers which contain analytical treatments of major issues or topics. The issues, topics, and principal investigators have been selected through an extensive peer review process. To learn more about the COP or the Decision Analysis Series, please write: NOAA Coastal Ocean Office 1315 East West Highway Silver Spring, MD 209 10 phone: 301-71 3-3338 fax: 30 1-7 13-4044 Cover photo: The upper portion of photo depicts a brown tide event in an inlet along the eastern end of Long Island, New York, during Summer 7986. The blue water is Block lsland Sound. Photo courtesy of L. Cosper. Science for Solutions NOAA COASTAL OCEAN PROGRAM Special Joint Report with the Decision Analysis Series No. 10 National Fish and WildlifeFoundation HARMFUL ALGAL BLOOMS IN COASTAL WATERS: Options for Prevention, Control and Mitigation Donald F. Boesch, Donald M. Anderson, Rita A. Horner Sandra E. Shumway, Patricia A. Tester, Terry E. Whitledge February 1997 National Oceanic and Atmospheric Administration National Fish and Wildlife Foundation D. James Baker, Under Secretary Amos S. Eno, Executive Director Coastal Ocean Office Donald Scavia, Director This ~ublicationshould be cited as: Boesch, Donald F. -
An Invitation to Monitor Georgia's Coastal Wetlands
An Invitation to Monitor Georgia’s Coastal Wetlands www.shellfish.uga.edu By Mary Sweeney-Reeves, Dr. Alan Power, & Ellie Covington First Printing 2003, Second Printing 2006, Copyright University of Georgia “This book was prepared by Mary Sweeney-Reeves, Dr. Alan Power, and Ellie Covington under an award from the Office of Ocean and Coastal Resource Management, National Oceanic and Atmospheric Administration. The statements, findings, conclusions, and recommendations are those of the authors and do not necessarily reflect the views of OCRM and NOAA.” 2 Acknowledgements Funding for the development of the Coastal Georgia Adopt-A-Wetland Program was provided by a NOAA Coastal Incentive Grant, awarded under the Georgia Department of Natural Resources Coastal Zone Management Program (UGA Grant # 27 31 RE 337130). The Coastal Georgia Adopt-A-Wetland Program owes much of its success to the support, experience, and contributions of the following individuals: Dr. Randal Walker, Marie Scoggins, Dodie Thompson, Edith Schmidt, John Crawford, Dr. Mare Timmons, Marcy Mitchell, Pete Schlein, Sue Finkle, Jenny Makosky, Natasha Wampler, Molly Russell, Rebecca Green, and Jeanette Henderson (University of Georgia Marine Extension Service); Courtney Power (Chatham County Savannah Metropolitan Planning Commission); Dr. Joe Richardson (Savannah State University); Dr. Chandra Franklin (Savannah State University); Dr. Dionne Hoskins (NOAA); Dr. Charles Belin (Armstrong Atlantic University); Dr. Merryl Alber (University of Georgia); (Dr. Mac Rawson (Georgia Sea Grant College Program); Harold Harbert, Kim Morris-Zarneke, and Michele Droszcz (Georgia Adopt-A-Stream); Dorset Hurley and Aimee Gaddis (Sapelo Island National Estuarine Research Reserve); Dr. Charra Sweeney-Reeves (All About Pets); Captain Judy Helmey (Miss Judy Charters); Jan Mackinnon and Jill Huntington (Georgia Department of Natural Resources). -
The Principal Fouling Organisms
CHAPTER 9 The Principal Fouling Organisms The purpose of this chapter is to present an ele- an introduction to the scientific literature wil find mentary account of the principal organisms found references at the end of the chapter. When identi- in fouling communities in order that those un- fication to the scientific name is essential, speci- trained in zoology may observe fouling with mens should be sent to the United States National greater understanding. It contains an account of Museum, Washington, D. C., or to a museum of the appearance, habits, mode of dispersal, and natural history where they can be classified by ex- relative importance of these forms. perts. The descriptions are intended only to enable practical workers to recognize the commoner or- MICROSCOPIC FOULING ORGANISMS ganisms by the name of the group to which they The microscopic fouling organisms include bac- A B FIGURE 1. Photomicrographs of slime Elm organisms. A. A type of bacteria from a bacterial slime film. From Dobson (5). B. A diatom slime film. belong. In the case of the barnacles, the more com- tcria, diatoms, protozoa, and rotifers. The bacteria mon North American species are described in suf- aLd diatoms produce slime films which form ficient detail to indicate how species may be iden- promptly on submerged surfaces. The protozoa are tified, but the descriptions are inadequate to per- commonly associated with these films though they mit the inexperienced worker to classify barnacles take no part in their production. The successive to the species with certainty. The identification changes in these populations on a submerged sur- and naming of the species of all fouling organisms face are shown in Figure 1, Chapter 4. -
Effects of Harmful Algal Blooms Caused by Aureoumbra Lagunensis (Brown Tide) on Larval and Juvenile Life Stages of the Eastern Oyster (Crassostrea Virginica)
University of Central Florida STARS Electronic Theses and Dissertations, 2004-2019 2016 Effects of harmful algal blooms caused by Aureoumbra lagunensis (brown tide) on larval and juvenile life stages of the eastern oyster (Crassostrea virginica) Panagiota Makris University of Central Florida Part of the Biology Commons Find similar works at: https://stars.library.ucf.edu/etd University of Central Florida Libraries http://library.ucf.edu This Masters Thesis (Open Access) is brought to you for free and open access by STARS. It has been accepted for inclusion in Electronic Theses and Dissertations, 2004-2019 by an authorized administrator of STARS. For more information, please contact [email protected]. STARS Citation Makris, Panagiota, "Effects of harmful algal blooms caused by Aureoumbra lagunensis (brown tide) on larval and juvenile life stages of the eastern oyster (Crassostrea virginica)" (2016). Electronic Theses and Dissertations, 2004-2019. 5319. https://stars.library.ucf.edu/etd/5319 EFFECTS OF HARMFUL ALGAL BLOOMS CAUSED BY AUREOUMBRA LAGUNENSIS (BROWN TIDE) ON LARVAL AND JUVENILE LIFE STAGES OF THE EASTERN OYSTER (CRASSOSTREA VIRGINICA) by PANAYIOTA MAKRIS B.S. University of South Florida, 2012 A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science in the Department of Biology in the College of Sciences at the University of Central Florida Orlando, Florida Spring Term 2016 Major Professor: Linda J. Walters ABSTRACT Harmful algal blooms caused by the marine microalga Aureoumbra lagunensis have been associated with negative impacts on marine fauna, both vertebrate and invertebrate. Within the Indian River Lagoon (IRL) estuary system along Florida’s east coast, blooms of A. -
Reassessing the Biodiversity of the Indian River Lagoon
Proceedings of Indian River Lagoon Symposium 2020 Reassessing the biodiversity of the Indian River Lagoon M. Dennis Hanisak(1) and Duane E. De Freese(2) (1)Harbor Branch Oceanographic Institute at Florida Atlantic University, 5600 U.S. 1 North, Fort Pierce, FL 34946 (2)IRL Council & Indian River Lagoon National Estuary Program, 1235 Main Street, Sebastian, FL 32958 Introduction The Indian River Lagoon (IRL), a unique, highly diverse, shallow-water estuary of national significance, stretches along 156 miles, ~40% of Florida’s east coast. The IRL’s annual economic value to Florida is estimated to be ~$7.6 billion (ECFRPC and TCRPC 2016). Urbanization, excessive freshwater releases, degradation of water quality, contaminant loading, loss of habitat, harmful algal blooms, decline of fisheries, and emerging diseases in marine mammals and other biota are increasingly important issues in the IRL (Sigua et al. 2000, Sime 2005, Reif et al. 2006, Taylor 2012, Phlips et al. 2015, Lapointe et al. 2015, Breininger et al. 2017), as they are throughout the world’s estuaries and coastal waters. In 1994, an Ad Hoc Committee established by the Indian River Lagoon National Estuary Program (IRLNEP) convened a conference on Biodiversity of the Indian River Lagoon in response to the lack of management planning on this topic. The goal of that two-day conference was to assemble and synthesize information on the status of biodiversity in the Lagoon. That synthesis contributed to management recommendations for inclusion in IRLNEP’s initial Comprehensive Conservation Management Plan (IRLNEP 1996). Proceedings of that conference were published as a dedicated issue (Bulletin of Marine Science 1995) that has served as an important reference for 25 years. -
Sublethal Effects of Texas Brown Tide on Streblospio Benedicti (Polychaeta) Larvae
Journal of Experimental Marine Biology and Ecology L 248 (2000) 121±129 www.elsevier.nl/locate/jembe Sublethal effects of Texas brown tide on Streblospio benedicti (Polychaeta) larvae Landon A. Ward, Paul A. Montagna* , Richard D. Kalke, Edward J. Buskey University of Texas at Austin, Marine Science Institute, 750 Channel View Drive, Port Aransas, TX 78373, USA Received 22 January 1998; received in revised form 13 January 2000; accepted 18 January 2000 Abstract The Texas brown tide bloom is noted for a concordant decline in benthic biomass and species diversity. However, the link between harmful effects induced by Texas brown tide and benthos has not been demonstrated. It has been proposed there may be a larval bottleneck, where larvae, but not adults, suffer adverse effects. This study was performed to test the effect of brown tide alga, Aureoumbra lagunensis, on mortality, growth and behavior of Streblospio benedicti larvae. Growth rates and swimming speeds, but not mortality rates, of polychaete larvae were reduced in cultures with brown tide relative to Isochrysis galbana, which is about the same size as brown tide. Results from this research indicate that brown tide does have harmful sublethal effects for one dominant species of meroplanktonic larvae, which could help explain reduced adult population size. 2000 Elsevier Science B.V. All rights reserved. Keywords: Brown tide; Polychaete larvae; Meroplankton; Growth; Mortality; Swimming speed; Turning rates 1. Introduction The Texas brown tide is a harmful algal bloom occurring in estuaries of the southern Texas coast, USA. The bloom was ®rst noted in January 1990 in Baf®n Bay and spread to Upper Laguna Madre in July 1990, where it persists as of this writing.