Detection and Molecular Characterization of Herpes Simplex Virus from Tanzania and Norway

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Detection and Molecular Characterization of Herpes Simplex Virus from Tanzania and Norway DETECTION AND MOLECULAR CHARACTERIZATION OF HERPES SIMPLEX VIRUS FROM TANZANIA AND NORWAY Mabula Joseph Kasubi Doctoral thesis submitted to the Faculty of Medicine, University of Bergen, in partial fulfilment of the requirements for a Ph.D degree Centre for International Health and Department of Microbiology and Immunology, The Gade Institute University of Bergen, Norway 2006 Table of Contents Acknowledgements .................................................................................................................... 3 List of original papers ................................................................................................................ 5 Abbreviations ............................................................................................................................. 6 1.0 Herpes simplex virus – General aspects......................................................................... 8 1.1 Taxonomy................................................................................................................... 8 1.2 Structure ..................................................................................................................... 8 1.3 Regulation of gene expression ................................................................................. 10 1.4 Entry of HSV into host cells .................................................................................... 11 1.5 Life cycle of HSV .................................................................................................... 11 1.6 HSV infections......................................................................................................... 12 1.7 Human disease.......................................................................................................... 13 1.8 Epidemiology of HSV infection............................................................................... 14 1.9 Treatment ................................................................................................................. 14 2.0 Diagnosis of HSV infection ......................................................................................... 15 3.0 Rationale for the present study..................................................................................... 16 3.1 Establishment of a new peptide ELISA for detection of HSV-1 antibodies................... 16 3.2 Detection of HSV specific antibodies in sera from children and young persons ........... 17 3.3 Genetic diversity of clinical HSV-2 isolates from Tanzania and Norway...................... 17 3.4 Aetiology of genital ulcers among patients attending STD clinic in Tanzania .............. 17 4.0 Aims of the study ......................................................................................................... 18 5.0 Summary of results....................................................................................................... 19 Paper I ……………………………………………………………………………………...19 Paper 11 ................................................................................................................................ 19 Paper III ................................................................................................................................ 20 Paper IV ................................................................................................................................ 20 6.0 General discussion........................................................................................................21 Peptide ELISA for detection of HSV-1 antibodies............................................................... 21 Detection of HSV specific antibodies................................................................................... 22 Genetic diversity of gG-2, gE-2 and gI-2 ............................................................................. 23 Aetiology of genital ulcer diseases ....................................................................................... 24 7.0 Conclusions .................................................................................................................. 26 8.0 Future perspectives....................................................................................................... 27 9.0 References .................................................................................................................... 28 10.0 Papers I - IV ................................................................................................................. 44 2 Acknowledgements The work presented in this thesis was carried out at the Centre for Research in Virology, University of Bergen, Norway. The work was funded by the Norwegian Educational Loan Fund and the University of Bergen, Norway. I would like to express my gratitude to everyone who has made it possible for me to reach the final point of this work. I wish you all peace and success. I would also like to express my sincere and special appreciation to the following: Professor Lars Haarr, my main supervisor. I wish to express my sincere gratitude for his dedicated and generous support in all aspects of my work. I am grateful for his valuable scientific advice, constructive criticism, encouragement, deep commitment and guidance throughout the study. My family and I, we will never forget the good times at his place, the warmth and kindness of his family. Professor Nina Langeland and Assistant Professor Arvid Nilsen, my co-supervisors. I would like to express my deepest gratitude for your support, enthusiasm, optimistic encouragements, valuable discussions and active participation in all stages of the study. Professor Tomas Bergström and Howard Marsden, collaborators of this study. I would like to express my sincere gratitude for having accepted to be part of this work. Your constructive comments, valuable scientific advice and commitments have been very important and useful for this thesis. Sigve Landstein, PhD student, Department of Molecular Biology. Thank you very much for helping me with the staden computer program. I am indebted to all staff at the Centre for International Health and all members at the Centre for Research in Virology for their help, encouragement and providing a very good working environment throughout the study period. 3 I am grateful to all members of the herpes group, particularly Kjerstin Jakobsen, Reidun Haegland and Lindsey Moore. The generous help, support and different socio-cultural gatherings organized have been a very wonderful and unforgettable to my family and me. With all my love, I would like to thank my wife, Beatrice and my daughter Anna for all the love and support they have shown me. They truly gave me strength, and support that I needed through these tough years. Thank you so much for your tolerance all these years. Finally, I owe special and deepest gratitude to God for giving me strength, both physically and mentally throughout the study period. Mange takk! Bergen, September 2006 Mabula Joseph Kasubi 4 List of original papers The thesis is based on the following papers referred to in the text by their respective roman numerals. Paper 1: Kasubi, M.J., Nilsen, A., Marsden, H.S., Bergström, T., Langeland, N., and Haarr, L. A branched, synthetic peptide corresponding to a region of glycoprotein G of HSV-1 reacts sensitively and specifically with HSV-1 antibodies in an ELISA. J. Virol. Methods. 2005; 125:137-143. Paper 11: Kasubi, M.J., Nilsen, A., Bergström, T., Langeland, N., Marsden, H.S., and Haarr, L. Prevalence of antibodies against herpes simplex viruses type 1 and type 2 in children and young people in an urban region in Tanzania. J. Clin. Microbiol. 2006; 44:2801-2807. Paper III: Kasubi, M.J., Norberg, P., Nilsen, A., Liljeqvist, JA., Bergström, T., Langeland, N., and Haarr, L. Clinical herpes simplex virus type 2 isolates from Tanzania and Norway cluster in two different genogroups. In manuscript. Paper IV: Nilsen, A., Kasubi, M.J., Mohn S.C., Mwakagile, D., Langeland, N., and Haarr, L. Herpes simplex virus infection and genital ulcer disease from STD patients in Dar es Salaam, Tanzania. Accepted with some modifications, Acta Dermato-Venereologica. 5 Abbreviations HSV Herpes simplex virus HSV-1 Herpes simplex virus type 1 HSV-2 Herpes simplex virus type 2 VZV Varicella zoster virus HCMV Human cytomegalovirus HHV-6 Human herpes virus 6 HHV-7 Human herpes virus 7 EBV Epstein-Barr virus Nm Nanometers DNA Deoxyribonucleic acid mRNA Messenger ribonucleic acid g Before a capital letter, glycoprotein B – N (gB - gN) kbp kilo base pair UL Long unique sequence of HSV genome US Short unique sequence of HSV genome TRS / L Terminal repeat sequences flanking US or UL Vhs Virus-host shut-off protein VP16 Virion protein 16 HveA Herpes virus entry protein A TNF Tumor necrosis factor Prr1/2 Poliovirus receptor-related proteins-1 or 2 HveB Herpes virus entry protein B HveC Herpes virus entry protein C MtrI Morphological transforming region of HSV-1 mtrII / mtrIII Morphological transforming regions of HSV-2 RRI Ribonucleotide reductase HPV Human papillomavirus WB Western blot ELISA Enzyme linked-immunosorbent assay PCR Polymerase chain reaction HCV Hepatitis C virus 6 HIV Human immunodeficiency virus GUD Genital ulcer disease STD Sexually transmitted disease STI Sexually transmitted infection 7 1.0 Herpes simplex virus – General aspects 1.1 Taxonomy Herpes simplex viruses (HSV) are important human pathogens causing diseases in a variety of different tissues and animal species. There are two antigenic
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