Supplementary Information Phylogeny of the Ichthyopterygia incorporating the recent discoveries from South China CHENG JI,1,2 DA-YONG JIANG,*, 2, 3 RYOSUKE MOTANI,4 OLIVIER RIEPPEL,5 WEI-CHENG HAO,2 and ZUO-YU SUN2 1Key Laboratory of Economic Stratigraphy and Palaeogeography, Nanjing Institute of Geology and Palaeontology, Chinese Academy of Sciences, Nanjing 210008, People’s Republic of China,
[email protected]; 2Laboratory of Orogenic Belt and Crustal Evolution, Ministry of Education; Department of Geology and Geological Museum, Peking University, Beijing 100871, People’s Republic of China,
[email protected]; 3State Key Laboratory of Palaeobiology and Stratigraphy, Nanjing Institute of Geology and Palaeontology, Chinese Academy of Sciences, Nanjing 210008, People’s Republic of China; 4Department of Geology, University of California, Davis, California 95616, U.S.A.,
[email protected]; 5Section of Earth Sciences, Integrative Research Center, The Field Museum, Chicago, Illinois 60605-2496, U.S.A.,
[email protected] RH: JI ET AL.—PHYLOGENY OF THE ICHTHYOPTERYGIA *Corresponding author INGROUP TAXA SELECTION We aim at conducting a comprehensive phylogengetic analysis incorporating the recent discoveries during the past fifteen years. However, some genera are known from only partial skeleton and many characters are coded as “?” (Table 1S). Therefore, we provide two analyses in the text based on different combinations of ingroup taxa. In the first analysis, all the taxa in Table 1S are included and results in many polytomies. In the second analysis, the taxa which can not be coded for more than 1/3 (54.3 characters) are removed and the topology is highly resolved. Table S1.