Signaling Networks That Regulate Cell Migration
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Development of Microfluidic Devices to Study Algal Chemotaxis and Long-Term Growth Dynamics" (2016)
Louisiana State University LSU Digital Commons LSU Master's Theses Graduate School 2016 Development of Microfluidic evD ices to Study Algal Chemotaxis and Long-Term Growth Dynamics Benjamin Seth Roberts Louisiana State University and Agricultural and Mechanical College, [email protected] Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_theses Part of the Chemical Engineering Commons Recommended Citation Roberts, Benjamin Seth, "Development of Microfluidic Devices to Study Algal Chemotaxis and Long-Term Growth Dynamics" (2016). LSU Master's Theses. 4496. https://digitalcommons.lsu.edu/gradschool_theses/4496 This Thesis is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Master's Theses by an authorized graduate school editor of LSU Digital Commons. For more information, please contact [email protected]. DEVELOPMENT OF MICROFLUIDIC DEVICES TO STUDY ALGAL CHEMOTAXIS AND LONG-TERM GROWTH DYNAMICS A Thesis Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Master of Science in The Cain Department of Chemical Engineering by Benjamin S. Roberts B.S., Mississippi State University, 2014 December 2016 TABLE OF CONTENTS ABSTRACT ................................................................................................................................... iii CHAPTER 1. INTRODUCTION ....................................................................................................1 -
Morphological Study of Cell Protrusions During Redirected Migration in Human Fibroblast Cells
MORPHOLOGICAL STUDY OF CELL PROTRUSIONS DURING REDIRECTED MIGRATION IN HUMAN FIBROBLAST CELLS Congyingzi Zhang A Thesis Submitted to the Graduate College of Bowling Green State University in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE August 2013 Committee: Dr. Carol Heckman, Advisor Dr. Roudabeh Jamasbi Dr. Peter Gorsevski ii ABSTRACT Carol A. Heckman, Advisor From the perspective of cell motility mechanisms, migration patterns arise from two opposing sources which can be viewed as forces. One, called intrinsic, maintains the cell persistence. The extrinsic arises from signals (repulsive or attractive) exerted by an external stimulus. The extrinsic force is stronger than the intrinsic, since it can overcome the intrinsic force and cause the cell to change direction. The current studies were designed to determine whether these forces were associated with different protrusions. I studied human fibroblast cells that collide with a haptotactic boundary between an adhesive substrate (germanium) and a non- adhesive substrate (plastic) in a chemokinesis system. The morphologies of cells migrating on the two substrates reflected the cells’ preference for the adhesive substrate. I measured the prevalence of various protrusions during the process of cells turning away from the boundary and reorienting their direction of travel. Classes that corresponded to protrusive features were identified by extracting latent factors from a number of primary, geometric variables, and included factor 4 (filopodia), factor 5 (cell mass displacement), and factor 7 (nascent neurites). The data showed that as cells moved further and further from the boundary, they had progressively lower values of factor 5. The correlation coefficient between the values is -0.4924. -
Negative Durotaxis: Cell Movement Toward Softer Environments
bioRxiv preprint doi: https://doi.org/10.1101/2020.10.27.357178; this version posted October 27, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Negative durotaxis: cell movement toward softer environments Aleksi Isomursu1,*, Keun-Young Park2,*, Jay Hou3,*, Bo Cheng4,5,*, Ghaidan Shamsan3, Benjamin Fuller3, Jesse Kasim3, M. Mohsen Mahmoodi2, Tian Jian Lu6,7, Guy M. Genin4,5,8, Feng Xu4,5, Min Lin4,5,#, Mark Distefano2,#, Johanna Ivaska1,9,#, and David J. Odde3,# 1Turku Bioscience Centre, University of Turku and Åbo Akademi University, 20520 Turku, Finland 2Department of Chemistry, University of Minnesota, Minneapolis 55455, MN, USA 3Department of Biomedical Engineering, University of Minnesota, Minneapolis 55455, MN, USA 4The Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi’an Jiaotong University, Xi’an 710049, P.R. China 5Bioinspired Engineering and Biomechanics Center (BEBC), Xi’an Jiaotong University, Xi’an 710049, P.R. China 6State Key Laboratory of Mechanics and Control of Mechanical Structures, Nanjing University of Aeronautics and Astronautics, NanjinG 210016, P.R. China 7MOE Key Laboratory of Multifunctional Materials and Structures, Xi’an JiaotonG University, Xi’an 710049, P.R. China 8NSF Science and TechnoloGy Center for EnGineerinG MechanobioloGy, WashinGton University in St. Louis, St. Louis 63130, MO, USA 9Department of Biochemistry, University of Turku, 20520 Turku, Finland *Equal contribution #Corresponding authors Email: [email protected] (D.J.O.); [email protected] (J.I.); [email protected] (M.D.); [email protected] (M.L.) Abstract: Durotaxis – the ability of cells to sense and migrate along stiffness gradients – is important for embryonic development and has been implicated in pathologies including fibrosis and cancer. -
Bimodal Rheotactic Behavior Reflects Flagellar Beat Asymmetry in Human Sperm Cells
Bimodal rheotactic behavior reflects flagellar beat asymmetry in human sperm cells Anton Bukatina,b,1, Igor Kukhtevichb,c,1, Norbert Stoopd,1, Jörn Dunkeld,2, and Vasily Kantslere aSt. Petersburg Academic University, St. Petersburg 194021, Russia; bInstitute for Analytical Instrumentation of the Russian Academy of Sciences, St. Petersburg 198095, Russia; cITMO University, St. Petersburg 197101, Russia; dDepartment of Mathematics, Massachusetts Institute of Technology, Cambridge, MA 02139-4307; and eDepartment of Physics, University of Warwick, Coventry CV4 7AL, United Kingdom Edited by Charles S. Peskin, New York University, New York, NY, and approved November 9, 2015 (received for review July 30, 2015) Rheotaxis, the directed response to fluid velocity gradients, has whether this effect is of mechanical (20) or hydrodynamic (21, been shown to facilitate stable upstream swimming of mamma- 22) origin. Experiments (23) show that the alga’s reorientation lian sperm cells along solid surfaces, suggesting a robust physical dynamics can lead to localization in shear flow (24, 25), with mechanism for long-distance navigation during fertilization. How- potentially profound implications in marine ecology. In contrast ever, the dynamics by which a human sperm orients itself relative to taxis in multiflagellate organisms (2, 5, 18, 26, 27), the navi- to an ambient flow is poorly understood. Here, we combine micro- gation strategies of uniflagellate cells are less well understood. fluidic experiments with mathematical modeling and 3D flagellar beat For instance, it was discovered only recently that uniflagellate reconstruction to quantify the response of individual sperm cells in marine bacteria, such as Vibrio alginolyticus and Pseudoalteromonas time-varying flow fields. Single-cell tracking reveals two kinematically haloplanktis, use a buckling instability in their lone flagellum to distinct swimming states that entail opposite turning behaviors under change their swimming direction (28). -
Dense Active Matter Model of Motion Patterns in Confluent Cell Monolayers Henkes, Silke; Kostanjevec, Kaja; Collinson, J
University of Dundee Dense active matter model of motion patterns in confluent cell monolayers Henkes, Silke; Kostanjevec, Kaja; Collinson, J. Martin; Sknepnek, Rastko; Bertin, Eric Published in: Nature Communications DOI: 10.1038/s41467-020-15164-5 Publication date: 2020 Licence: CC BY Document Version Publisher's PDF, also known as Version of record Link to publication in Discovery Research Portal Citation for published version (APA): Henkes, S., Kostanjevec, K., Collinson, J. M., Sknepnek, R., & Bertin, E. (2020). Dense active matter model of motion patterns in confluent cell monolayers. Nature Communications, 11, [1405]. https://doi.org/10.1038/s41467-020-15164-5 General rights Copyright and moral rights for the publications made accessible in Discovery Research Portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from Discovery Research Portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain. • You may freely distribute the URL identifying the publication in the public portal. Take down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Download date: 29. Sep. 2021 ARTICLE https://doi.org/10.1038/s41467-020-15164-5 OPEN Dense active matter model of motion patterns in confluent cell monolayers ✉ ✉ ✉ Silke Henkes 1,2 , Kaja Kostanjevec3, J. -
A Hybrid Computational Model for Collective Cell Durotaxis
Biomechanics and Modeling in Mechanobiology https://doi.org/10.1007/s10237-018-1010-2 ORIGINAL PAPER A hybrid computational model for collective cell durotaxis Jorge Escribano1 · Raimon Sunyer2,5 · María Teresa Sánchez3 · Xavier Trepat2,4,5,6 · Pere Roca-Cusachs2,4 · José Manuel García-Aznar1 Received: 13 September 2017 / Accepted: 17 February 2018 © Springer-Verlag GmbH Germany, part of Springer Nature 2018 Abstract Collective cell migration is regulated by a complex set of mechanical interactions and cellular mechanisms. Collective migration emerges from mechanisms occurring at single cell level, involving processes like contraction, polymerization and depolymerization, of cell–cell interactions and of cell–substrate adhesion. Here, we present a computational framework which simulates the dynamics of this emergent behavior conditioned by substrates with stiffness gradients. The computational model reproduces the cell’s ability to move toward the stiffer part of the substrate, process known as durotaxis. It combines the continuous formulation of truss elements and a particle-based approach to simulate the dynamics of cell–matrix adhesions and cell–cell interactions. Using this hybrid approach, researchers can quickly create a quantitative model to understand the regulatory role of different mechanical conditions on the dynamics of collective cell migration. Our model shows that durotaxis occurs due to the ability of cells to deform the substrate more in the part of lower stiffness than in the stiffer part. This effect explains why cell collective movement is more effective than single cell movement in stiffness gradient conditions. In addition, we numerically evaluate how gradient stiffness properties, cell monolayer size and force transmission between cells and extracellular matrix are crucial in regulating durotaxis. -
Engineering 3D Systems with Tunable Mechanical Properties to Mimic the Tumor Microenvironment Shalini Raj Unnikandam Veettil Iowa State University
Iowa State University Capstones, Theses and Graduate Theses and Dissertations Dissertations 2018 Engineering 3D systems with tunable mechanical properties to mimic the tumor microenvironment Shalini Raj Unnikandam Veettil Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/etd Part of the Chemical Engineering Commons Recommended Citation Unnikandam Veettil, Shalini Raj, "Engineering 3D systems with tunable mechanical properties to mimic the tumor microenvironment" (2018). Graduate Theses and Dissertations. 17339. https://lib.dr.iastate.edu/etd/17339 This Thesis is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. Engineering 3D systems with tunable mechanical properties to mimic the tumor microenvironment by Shalini Raj Unnikandam Veettil A thesis submitted to the graduate faculty in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE Major: Chemical Engineering Program of Study Committee: Ian C Schneider, Major Professor Kaitlin Bratlie Michael Bartlett The student author, whose presentation of the scholarship herein was approved by the program of study committee, is solely responsible for the content of this thesis. The Graduate College will ensure this thesis is globally accessible and will not permit alterations after a degree is conferred. Iowa State University Ames, Iowa 2018 Copyright © Shalini Raj Unnikandam Veettil, 2018. All rights reserved. ii DEDICATION This thesis is dedicated to my family and friends who have been a great source of support. -
Plasticity of Cell Migration Resulting from Mechanochemical Coupling Yuansheng Cao†, Elisabeth Ghabache†, Wouter-Jan Rappel*
RESEARCH ARTICLE Plasticity of cell migration resulting from mechanochemical coupling Yuansheng Cao†, Elisabeth Ghabache†, Wouter-Jan Rappel* Department of Physics, University of California, San Diego, La Jolla, United States Abstract Eukaryotic cells can migrate using different modes, ranging from amoeboid-like, during which actin filled protrusions come and go, to keratocyte-like, characterized by a stable morphology and persistent motion. How cells can switch between these modes is not well understood but waves of signaling events are thought to play an important role in these transitions. Here we present a simple two-component biochemical reaction-diffusion model based on relaxation oscillators and couple this to a model for the mechanics of cell deformations. Different migration modes, including amoeboid-like and keratocyte-like, naturally emerge through transitions determined by interactions between biochemical traveling waves, cell mechanics and morphology. The model predictions are explicitly verified by systematically reducing the protrusive force of the actin network in experiments using Dictyostelium discoideum cells. Our results indicate the importance of coupling signaling events to cell mechanics and morphology and may be applicable in a wide variety of cell motility systems. DOI: https://doi.org/10.7554/eLife.48478.001 Introduction Eukaryotic cell migration is a fundamental biological process that is essential in development and wound healing and plays a critical role in pathological diseases, including inflammation and -
Inter-Kingdom Signaling by the Legionella Quorum Sensing Molecule LAI-1 Modulates Cell Migration Through an IQGAP1-Cdc42-ARHGEF9-Dependent Pathway
http://www.diva-portal.org This is the published version of a paper published in PLoS Pathogens. Citation for the original published paper (version of record): Simon, S., Schell, U., Heuer, N., Hager, D., Albers, M F. et al. (2015) Inter-kingdom Signaling by the Legionella Quorum Sensing Molecule LAI-1 Modulates Cell Migration through an IQGAP1-Cdc42-ARHGEF9-Dependent Pathway. PLoS Pathogens, 11(12): e1005307 http://dx.doi.org/10.1371/journal.ppat.1005307 Access to the published version may require subscription. N.B. When citing this work, cite the original published paper. Permanent link to this version: http://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-114332 RESEARCH ARTICLE Inter-kingdom Signaling by the Legionella Quorum Sensing Molecule LAI-1 Modulates Cell Migration through an IQGAP1-Cdc42- ARHGEF9-Dependent Pathway Sylvia Simon1,2, Ursula Schell1, Natalie Heuer3, Dominik Hager4, Michael F. Albers5, Jan Matthias3, Felix Fahrnbauer4, Dirk Trauner4, Ludwig Eichinger3, Christian Hedberg5,6, Hubert Hilbi1,2* 1 Max von Pettenkofer Institute, Ludwig-Maximilians University, Munich, Germany, 2 Institute of Medical Microbiology, University of Zürich, Zürich, Switzerland, 3 Institute of Biochemistry I, University of Cologne, Cologne, Germany, 4 Department of Chemistry, Ludwig-Maximilians University, Munich, Germany, 5 Department of Chemistry and Umeå Center for Microbial Research, Umeå University, Umeå, Sweden, 6 Department of Chemical Biology, Max-Planck-Institute of Molecular Physiology, Dortmund, Germany * [email protected] OPEN ACCESS Citation: Simon S, Schell U, Heuer N, Hager D, Abstract Albers MF, Matthias J, et al. (2015) Inter-kingdom Signaling by the Legionella Quorum Sensing Small molecule signaling promotes the communication between bacteria as well as Molecule LAI-1 Modulates Cell Migration through an between bacteria and eukaryotes. -
As a Generative Model of Collective Cell Migration Mechanisms Arnab Barua1,2,6, Josue M
www.nature.com/scientificreports OPEN A least microenvironmental uncertainty principle (LEUP) as a generative model of collective cell migration mechanisms Arnab Barua1,2,6, Josue M. Nava‑Sedeño2,4,6, Michael Meyer‑Hermann1,3 & Haralampos Hatzikirou1,2,5* Collective migration is commonly observed in groups of migrating cells, in the form of swarms or aggregates. Mechanistic models have proven very useful in understanding collective cell migration. Such models, either explicitly consider the forces involved in the interaction and movement of individuals or phenomenologically defne rules which mimic the observed behavior of cells. However, mechanisms leading to collective migration are varied and specifc to the type of cells involved. Additionally, the precise and complete dynamics of many important chemomechanical factors infuencing cell movement, from signalling pathways to substrate sensing, are typically either too complex or largely unknown. The question is how to make quantitative/qualitative predictions of collective behavior without exact mechanistic knowledge. Here we propose the least microenvironmental uncertainty principle (LEUP) that may serve as a generative model of collective migration without precise incorporation of full mechanistic details. Using statistical physics tools, we show that the famous Vicsek model is a special case of LEUP. Finally, to test the biological applicability of our theory, we apply LEUP to construct a model of the collective behavior of spherical Serratia marcescens bacteria, where the underlying migration mechanisms remain elusive. Collective movement of dense populations is observed in several biological systems at diferent scales, from mas- sive migration of mammals 1 to cells during embryogenesis 2. In these systems, individuals which are able to propel themselves independently and interact with other nearby, start moving in a coordinated fashion once enough similar individuals are brought together. -
Candida Albicans Quorum Sensing Molecules Stimulate Mouse Macrophage Migration Jessica C
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Kenneth Nickerson Papers Papers in the Biological Sciences 2015 Candida albicans Quorum Sensing Molecules Stimulate Mouse Macrophage Migration Jessica C. Hargarten University of Nebraska - Lincoln Tyler C. Moore University of Nebraska - Lincoln Thomas M. Petro University of Nebraska Medical Center, [email protected] Kenneth W. Nickerson University of Nebraska - Lincoln, [email protected] Audrey L. Atkin University of Nebraska - Lincoln, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/bioscinickerson Part of the Environmental Microbiology and Microbial Ecology Commons, Other Life Sciences Commons, and the Pathogenic Microbiology Commons Hargarten, Jessica C.; Moore, Tyler C.; Petro, Thomas M.; Nickerson, Kenneth W.; and Atkin, Audrey L., "Candida albicans Quorum Sensing Molecules Stimulate Mouse Macrophage Migration" (2015). Kenneth Nickerson Papers. 1. https://digitalcommons.unl.edu/bioscinickerson/1 This Article is brought to you for free and open access by the Papers in the Biological Sciences at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Kenneth Nickerson Papers by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Candida albicans Quorum Sensing Molecules Stimulate Mouse Macrophage Migration Jessica C. Hargarten,a Tyler C. Moore,a* Thomas M. Petro,b Kenneth W. Nickerson,a Audrey L. Atkina School of Biological Sciences, University of Nebraska, Lincoln, Nebraska, USAa; Department of Oral Biology, University of Nebraska Medical Center, Lincoln, Nebraska, USAb The polymorphic commensal fungus Candida albicans causes life-threatening disease via bloodstream and intra-abdominal infections in immunocompromised and transplant patients. Although host immune evasion is a common strategy used by suc- cessful human fungal pathogens, C. -
From Cell to Multi-Crypt: Agent-Based Models of the Human Colon Suggests Novel Processes of Field Cancerisation
This is a repository copy of From cell to multi-crypt: Agent-based models of the human colon suggests novel processes of field cancerisation. White Rose Research Online URL for this paper: http://eprints.whiterose.ac.uk/155727/ Version: Accepted Version Article: Ingham-Dempster, T.A., Rosser, R., Corfe, B.M. et al. (1 more author) (2020) From cell to multi-crypt: Agent-based models of the human colon suggests novel processes of field cancerisation. Journal of Computational Science. 101066. ISSN 1877-7503 https://doi.org/10.1016/j.jocs.2019.101066 Article available under the terms of the CC-BY-NC-ND licence (https://creativecommons.org/licenses/by-nc-nd/4.0/). Reuse This article is distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs (CC BY-NC-ND) licence. This licence only allows you to download this work and share it with others as long as you credit the authors, but you can’t change the article in any way or use it commercially. More information and the full terms of the licence here: https://creativecommons.org/licenses/ Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing [email protected] including the URL of the record and the reason for the withdrawal request. [email protected] https://eprints.whiterose.ac.uk/ From Cell to Multi-crypt: Agent-based Models of the Human Colon Suggests Novel Processes of Field Cancerisation Timothy A. Ingham-Dempster1,2,3, Ria Rosser2, Bernard M. Corfe,1,2, and Dawn C.