PLK1 Facilitates Chromosome Biorientation by Suppressing Centromere Disintegration Driven by BLM-Mediated Unwinding and Spindle Pulling
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Gene Knockdown of CENPA Reduces Sphere Forming Ability and Stemness of Glioblastoma Initiating Cells
Neuroepigenetics 7 (2016) 6–18 Contents lists available at ScienceDirect Neuroepigenetics journal homepage: www.elsevier.com/locate/nepig Gene knockdown of CENPA reduces sphere forming ability and stemness of glioblastoma initiating cells Jinan Behnan a,1, Zanina Grieg b,c,1, Mrinal Joel b,c, Ingunn Ramsness c, Biljana Stangeland a,b,⁎ a Department of Molecular Medicine, Institute of Basic Medical Sciences, The Medical Faculty, University of Oslo, Oslo, Norway b Norwegian Center for Stem Cell Research, Department of Immunology and Transfusion Medicine, Oslo University Hospital, Oslo, Norway c Vilhelm Magnus Laboratory for Neurosurgical Research, Institute for Surgical Research and Department of Neurosurgery, Oslo University Hospital, Oslo, Norway article info abstract Article history: CENPA is a centromere-associated variant of histone H3 implicated in numerous malignancies. However, the Received 20 May 2016 role of this protein in glioblastoma (GBM) has not been demonstrated. GBM is one of the most aggressive Received in revised form 23 July 2016 human cancers. GBM initiating cells (GICs), contained within these tumors are deemed to convey Accepted 2 August 2016 characteristics such as invasiveness and resistance to therapy. Therefore, there is a strong rationale for targeting these cells. We investigated the expression of CENPA and other centromeric proteins (CENPs) in Keywords: fi CENPA GICs, GBM and variety of other cell types and tissues. Bioinformatics analysis identi ed the gene signature: fi Centromeric proteins high_CENP(AEFNM)/low_CENP(BCTQ) whose expression correlated with signi cantly worse GBM patient Glioblastoma survival. GBM Knockdown of CENPA reduced sphere forming ability, proliferation and cell viability of GICs. We also Brain tumor detected significant reduction in the expression of stemness marker SOX2 and the proliferation marker Glioblastoma initiating cells and therapeutic Ki67. -
Genetic and Genomic Analysis of Hyperlipidemia, Obesity and Diabetes Using (C57BL/6J × TALLYHO/Jngj) F2 Mice
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Nutrition Publications and Other Works Nutrition 12-19-2010 Genetic and genomic analysis of hyperlipidemia, obesity and diabetes using (C57BL/6J × TALLYHO/JngJ) F2 mice Taryn P. Stewart Marshall University Hyoung Y. Kim University of Tennessee - Knoxville, [email protected] Arnold M. Saxton University of Tennessee - Knoxville, [email protected] Jung H. Kim Marshall University Follow this and additional works at: https://trace.tennessee.edu/utk_nutrpubs Part of the Animal Sciences Commons, and the Nutrition Commons Recommended Citation BMC Genomics 2010, 11:713 doi:10.1186/1471-2164-11-713 This Article is brought to you for free and open access by the Nutrition at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Nutrition Publications and Other Works by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. Stewart et al. BMC Genomics 2010, 11:713 http://www.biomedcentral.com/1471-2164/11/713 RESEARCH ARTICLE Open Access Genetic and genomic analysis of hyperlipidemia, obesity and diabetes using (C57BL/6J × TALLYHO/JngJ) F2 mice Taryn P Stewart1, Hyoung Yon Kim2, Arnold M Saxton3, Jung Han Kim1* Abstract Background: Type 2 diabetes (T2D) is the most common form of diabetes in humans and is closely associated with dyslipidemia and obesity that magnifies the mortality and morbidity related to T2D. The genetic contribution to human T2D and related metabolic disorders is evident, and mostly follows polygenic inheritance. The TALLYHO/ JngJ (TH) mice are a polygenic model for T2D characterized by obesity, hyperinsulinemia, impaired glucose uptake and tolerance, hyperlipidemia, and hyperglycemia. -
Real-Time Dynamics of Plasmodium NDC80 Reveals Unusual Modes of Chromosome Segregation During Parasite Proliferation Mohammad Zeeshan1,*, Rajan Pandey1,*, David J
© 2020. Published by The Company of Biologists Ltd | Journal of Cell Science (2021) 134, jcs245753. doi:10.1242/jcs.245753 RESEARCH ARTICLE SPECIAL ISSUE: CELL BIOLOGY OF HOST–PATHOGEN INTERACTIONS Real-time dynamics of Plasmodium NDC80 reveals unusual modes of chromosome segregation during parasite proliferation Mohammad Zeeshan1,*, Rajan Pandey1,*, David J. P. Ferguson2,3, Eelco C. Tromer4, Robert Markus1, Steven Abel5, Declan Brady1, Emilie Daniel1, Rebecca Limenitakis6, Andrew R. Bottrill7, Karine G. Le Roch5, Anthony A. Holder8, Ross F. Waller4, David S. Guttery9 and Rita Tewari1,‡ ABSTRACT eukaryotic organisms to proliferate, propagate and survive. During Eukaryotic cell proliferation requires chromosome replication and these processes, microtubular spindles form to facilitate an equal precise segregation to ensure daughter cells have identical genomic segregation of duplicated chromosomes to the spindle poles. copies. Species of the genus Plasmodium, the causative agents of Chromosome attachment to spindle microtubules (MTs) is malaria, display remarkable aspects of nuclear division throughout their mediated by kinetochores, which are large multiprotein complexes life cycle to meet some peculiar and unique challenges to DNA assembled on centromeres located at the constriction point of sister replication and chromosome segregation. The parasite undergoes chromatids (Cheeseman, 2014; McKinley and Cheeseman, 2016; atypical endomitosis and endoreduplication with an intact nuclear Musacchio and Desai, 2017; Vader and Musacchio, 2017). Each membrane and intranuclear mitotic spindle. To understand these diverse sister chromatid has its own kinetochore, oriented to facilitate modes of Plasmodium cell division, we have studied the behaviour movement to opposite poles of the spindle apparatus. During and composition of the outer kinetochore NDC80 complex, a key part of anaphase, the spindle elongates and the sister chromatids separate, the mitotic apparatus that attaches the centromere of chromosomes to resulting in segregation of the two genomes during telophase. -
Supplementary Table S1. Correlation Between the Mutant P53-Interacting Partners and PTTG3P, PTTG1 and PTTG2, Based on Data from Starbase V3.0 Database
Supplementary Table S1. Correlation between the mutant p53-interacting partners and PTTG3P, PTTG1 and PTTG2, based on data from StarBase v3.0 database. PTTG3P PTTG1 PTTG2 Gene ID Coefficient-R p-value Coefficient-R p-value Coefficient-R p-value NF-YA ENSG00000001167 −0.077 8.59e-2 −0.210 2.09e-6 −0.122 6.23e-3 NF-YB ENSG00000120837 0.176 7.12e-5 0.227 2.82e-7 0.094 3.59e-2 NF-YC ENSG00000066136 0.124 5.45e-3 0.124 5.40e-3 0.051 2.51e-1 Sp1 ENSG00000185591 −0.014 7.50e-1 −0.201 5.82e-6 −0.072 1.07e-1 Ets-1 ENSG00000134954 −0.096 3.14e-2 −0.257 4.83e-9 0.034 4.46e-1 VDR ENSG00000111424 −0.091 4.10e-2 −0.216 1.03e-6 0.014 7.48e-1 SREBP-2 ENSG00000198911 −0.064 1.53e-1 −0.147 9.27e-4 −0.073 1.01e-1 TopBP1 ENSG00000163781 0.067 1.36e-1 0.051 2.57e-1 −0.020 6.57e-1 Pin1 ENSG00000127445 0.250 1.40e-8 0.571 9.56e-45 0.187 2.52e-5 MRE11 ENSG00000020922 0.063 1.56e-1 −0.007 8.81e-1 −0.024 5.93e-1 PML ENSG00000140464 0.072 1.05e-1 0.217 9.36e-7 0.166 1.85e-4 p63 ENSG00000073282 −0.120 7.04e-3 −0.283 1.08e-10 −0.198 7.71e-6 p73 ENSG00000078900 0.104 2.03e-2 0.258 4.67e-9 0.097 3.02e-2 Supplementary Table S2. -
Birth, Evolution, and Transmission of Satellite-Free Mammalian Centromeric Domains
Downloaded from genome.cshlp.org on October 7, 2021 - Published by Cold Spring Harbor Laboratory Press Research Birth, evolution, and transmission of satellite-free mammalian centromeric domains Solomon G. Nergadze,1,6 Francesca M. Piras,1,6 Riccardo Gamba,1,6 Marco Corbo,1,6 † Federico Cerutti,1, Joseph G.W. McCarter,2 Eleonora Cappelletti,1 Francesco Gozzo,1 Rebecca M. Harman,3 Douglas F. Antczak,3 Donald Miller,3 Maren Scharfe,4 Giulio Pavesi,5 Elena Raimondi,1 Kevin F. Sullivan,2 and Elena Giulotto1 1Department of Biology and Biotechnology “Lazzaro Spallanzani,” University of Pavia, 27100 Pavia, Italy; 2Centre for Chromosome Biology, School of Natural Sciences, National University of Ireland, Galway, H91 TK33, Ireland; 3Baker Institute for Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, New York 14850, USA; 4Genomanalytik (GMAK), Helmholtz Centre for Infection Research (HZI), 38124 Braunschweig, Germany; 5Department of Biosciences, University of Milano, 20122 Milano, Italy Mammalian centromeres are associated with highly repetitive DNA (satellite DNA), which has so far hindered molecular analysis of this chromatin domain. Centromeres are epigenetically specified, and binding of the CENPA protein is their main determinant. In previous work, we described the first example of a natural satellite-free centromere on Equus caballus Chromosome 11. Here, we investigated the satellite-free centromeres of Equus asinus by using ChIP-seq with anti-CENPA an- tibodies. We identified an extraordinarily high number of centromeres lacking satellite DNA (16 of 31). All of them lay in LINE- and AT-rich regions. A subset of these centromeres is associated with DNA amplification. The location of CENPA binding domains can vary in different individuals, giving rise to epialleles. -
Monoclonal Anti-Nuf2 Antibody Produced in Mouse (N5287)
Monoclonal Anti-Nuf2 Clone 28-37 Purified Mouse Immunoglobulin Product Number N 5287 Product Description Reagent Monoclonal Anti-Nuf2 (mouse IgG1isotype) is derived The antibody is supplied as a solution in 0.01 M phos- from the hybridoma 28-37 produced by the fusion of phate buffered saline, pH 7.4, containing 15 mM sodium mouse myeloma cells (PAI cells) and splenocytes from azide. BALB/c mice immunized with recombinant full length human Nuf2.1 The isotype is determined using a double Antibody Concentration: ~2 mg/mL diffusion immunoassay using Mouse Monoclonal Antibody Isotyping Reagents (Sigma ISO-2). Precautions and Disclaimer Due to the sodium azide content, a material safety data Monoclonal Anti-Nuf2 recognizes human Nuf2.1 The sheet (MSDS) for this product has been sent to the antibody can be used in various applications including attention of the safety officer of your institution. Consult ELISA, immunoblotting (~52 kDa),1 immunocyto- the MSDS for information regarding hazardous and chemistry,1 and immunoprecipitation.1 safe handling practices. Chromosome movements during mitosis are Storage/Stability orchestrated primarily by the interaction of mitotic For continuous use, store at 2-8 °C for up to one month. spindle microtubules with the kinetochore, the site of For extended storage, freeze in working aliquots. attachment of spindle microtubules to the centromere.2 Repeated freezing and thawing is not recommended. The kinetochore consists of several proteins including Storage in “frost-free” freezers is also not recom- the Ndc80 protein complex, which consists of Nuf2, mended. If slight turbidity occurs upon prolonged Hec1, Spc24, and Spc25. Nuf2 is a conserved protein storage, clarify the solution by centrifugation before from yeast and nematode to human. -
Ribosomal DNA Copy Number Is Coupled with Gene Expression Variation and Mitochondrial Abundance in Humans
ARTICLE Received 12 Apr 2014 | Accepted 30 Jul 2014 | Published 11 Sep 2014 DOI: 10.1038/ncomms5850 Ribosomal DNA copy number is coupled with gene expression variation and mitochondrial abundance in humans John G. Gibbons1, Alan T. Branco1, Shoukai Yu1 & Bernardo Lemos1 Ribosomes are essential intracellular machines composed of proteins and RNA molecules. The DNA sequences (rDNA) encoding ribosomal RNAs (rRNAs) are tandemly repeated and give origin to the nucleolus. Here we develop a computational method for estimating rDNA dosage (copy number) and mitochondrial DNA abundance using whole-genome short-read DNA sequencing. We estimate these attributes across hundreds of human genomes and their association with global gene expression. The analyses uncover abundant variation in rDNA dosage that is coupled with the expression of hundreds of functionally coherent gene sets. These include associations with genes coding for chromatin components that target the nucleolus, including CTCF and HP1b. Finally, the data show an inverse association between rDNA dosage and mitochondrial DNA abundance that is manifested across genotypes. Our findings uncover a novel and cryptic source of hypervariable genomic diversity with global regulatory consequences (ribosomal eQTL) in humans. The variation provides a mechanism for cellular homeostasis and for rapid and reversible adaptation. 1 Program in Molecular and Integrative Physiological Sciences, Department of Environmental Health, Harvard School of Public Health, 665 Huntington Avenue, Building 2, Room 219, Boston, Massachusetts 02115, USA. Correspondence and requests for materials should be addressed to B.L. (email: [email protected]). NATURE COMMUNICATIONS | 5:4850 | DOI: 10.1038/ncomms5850 | www.nature.com/naturecommunications 1 & 2014 Macmillan Publishers Limited. -
Peripherally Generated Foxp3+ Regulatory T Cells Mediate the Immunomodulatory Effects of Ivig in Allergic Airways Disease
Published February 20, 2017, doi:10.4049/jimmunol.1502361 The Journal of Immunology Peripherally Generated Foxp3+ Regulatory T Cells Mediate the Immunomodulatory Effects of IVIg in Allergic Airways Disease Amir H. Massoud,*,†,1 Gabriel N. Kaufman,* Di Xue,* Marianne Be´land,* Marieme Dembele,* Ciriaco A. Piccirillo,‡ Walid Mourad,† and Bruce D. Mazer* IVIg is widely used as an immunomodulatory therapy. We have recently demonstrated that IVIg protects against airway hyper- responsiveness (AHR) and inflammation in mouse models of allergic airways disease (AAD), associated with induction of Foxp3+ regulatory T cells (Treg). Using mice carrying a DTR/EGFP transgene under the control of the Foxp3 promoter (DEREG mice), we demonstrate in this study that IVIg generates a de novo population of peripheral Treg (pTreg) in the absence of endogenous Treg. IVIg-generated pTreg were sufficient for inhibition of OVA-induced AHR in an Ag-driven murine model of AAD. In the absence of endogenous Treg, IVIg failed to confer protection against AHR and airway inflammation. Adoptive transfer of purified IVIg-generated pTreg prior to Ag challenge effectively prevented airway inflammation and AHR in an Ag-specific manner. Microarray gene expression profiling of IVIg-generated pTreg revealed upregulation of genes associated with cell cycle, chroma- tin, cytoskeleton/motility, immunity, and apoptosis. These data demonstrate the importance of Treg in regulating AAD and show that IVIg-generated pTreg are necessary and sufficient for inhibition of allergen-induced AAD. The ability of IVIg to generate pure populations of highly Ag-specific pTreg represents a new avenue to study pTreg, the cross-talk between humoral and cellular immunity, and regulation of the inflammatory response to Ags. -
Rapid Molecular Assays to Study Human Centromere Genomics
Downloaded from genome.cshlp.org on September 26, 2021 - Published by Cold Spring Harbor Laboratory Press Method Rapid molecular assays to study human centromere genomics Rafael Contreras-Galindo,1 Sabrina Fischer,1,2 Anjan K. Saha,1,3,4 John D. Lundy,1 Patrick W. Cervantes,1 Mohamad Mourad,1 Claire Wang,1 Brian Qian,1 Manhong Dai,5 Fan Meng,5,6 Arul Chinnaiyan,7,8 Gilbert S. Omenn,1,9,10 Mark H. Kaplan,1 and David M. Markovitz1,4,11,12 1Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan 48109, USA; 2Laboratory of Molecular Virology, Centro de Investigaciones Nucleares, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay 11400; 3Medical Scientist Training Program, University of Michigan, Ann Arbor, Michigan 48109, USA; 4Program in Cancer Biology, University of Michigan, Ann Arbor, Michigan 48109, USA; 5Molecular and Behavioral Neuroscience Institute, University of Michigan, Ann Arbor, Michigan 48109, USA; 6Department of Psychiatry, University of Michigan, Ann Arbor, Michigan 48109, USA; 7Michigan Center for Translational Pathology and Comprehensive Cancer Center, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA; 8Howard Hughes Medical Institute, Chevy Chase, Maryland 20815, USA; 9Department of Human Genetics, 10Departments of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan 48109, USA; 11Program in Immunology, University of Michigan, Ann Arbor, Michigan 48109, USA; 12Program in Cellular and Molecular Biology, University of Michigan, Ann Arbor, Michigan 48109, USA The centromere is the structural unit responsible for the faithful segregation of chromosomes. Although regulation of cen- tromeric function by epigenetic factors has been well-studied, the contributions of the underlying DNA sequences have been much less well defined, and existing methodologies for studying centromere genomics in biology are laborious. -
The Mitotic Checkpoint Kinase NEK2A Regulates Kinetochore Microtubule Attachment Stability
Oncogene (2008) 27, 4107–4114 & 2008 Nature Publishing Group All rights reserved 0950-9232/08 $30.00 www.nature.com/onc ORIGINAL ARTICLE The mitotic checkpoint kinase NEK2A regulates kinetochore microtubule attachment stability JDu1,6, X Cai1,2,6, J Yao1, X Ding2,3,QWu1,2, S Pei1, K Jiang1,2, Y Zhang1, W Wang3, Y Shi1, Y Lai1, J Shen1, M Teng1, H Huang4, Q Fei5, ES Reddy2, J Zhu5, C Jin1 and X Yao1,2 1Hefei National Laboratory for Physical Sciences at Micro-scale, University of Science and Technology of China, Hefei, China; 2Cancer Biology Program, Morehouse School of Medicine, Atlanta, GA, USA; 3Department of Medicine, Beijing University of Chinese Medicine, 4Department of Hematology, the 1st Affiliated Hospital, Zhejiang University, Hongzhou, China and 5Cancer Epigenetics Program, Shanghai Cancer Institute, Shanghai Jiaotong University, Shanghai, China Loss or gain of whole chromosome, the form of Introduction chromosome instability commonly associated with cancers is thought to arise from aberrant chromosome segregation Chromosomal instability (CIN) has been recognized as a during cell division. Chromosome segregation in mitosis is hallmark of human cancer and is caused by continuous orchestrated by the interaction of kinetochores with chromosome missegregation during cell division. Proper spindle microtubules. Our studies showthat NEK2A is a chromosome segregation requires a faithful physical link kinetochore-associated protein kinase essential for faith- between spindle microtubules and centromeric DNA via ful chromosome segregation. However, it was unclear how a protein supercomplex called kinetochore (Cleveland NEK2A ensures accurate chromosome segregation in et al., 2003). In addition to providing a physical link mitosis. Here we show that NEK2A-mediated Hec1 between chromosomes and spindle microtubules, the (highly expressed in cancer) phosphorylation is essential kinetochore has an active function in orchestrating for faithful kinetochore microtubule attachments in chromosome movements through microtubule motors mitosis. -
CENP-A Overexpression Promotes Distinct Fates in Human Cells, Depending on P53 Status
ARTICLE https://doi.org/10.1038/s42003-021-01941-5 OPEN CENP-A overexpression promotes distinct fates in human cells, depending on p53 status Daniel Jeffery 1, Alberto Gatto 1, Katrina Podsypanina1, Charlène Renaud-Pageot 1, Rebeca Ponce Landete 1, Lorraine Bonneville1, Marie Dumont2, Daniele Fachinetti 2 & ✉ Geneviève Almouzni 1 Tumour evolution is driven by both genetic and epigenetic changes. CENP-A, the centromeric histone H3 variant, is an epigenetic mark that directly perturbs genetic stability and chro- matin when overexpressed. Although CENP-A overexpression is a common feature of many cancers, how this impacts cell fate and response to therapy remains unclear. Here, we 1234567890():,; established a tunable system of inducible and reversible CENP-A overexpression combined with a switch in p53 status in human cell lines. Through clonogenic survival assays, single-cell RNA-sequencing and cell trajectory analysis, we uncover the tumour suppressor p53 as a key determinant of how CENP-A impacts cell state, cell identity and therapeutic response. If p53 is functional, CENP-A overexpression promotes senescence and radiosensitivity. Surprisingly, when we inactivate p53, CENP-A overexpression instead promotes epithelial-mesenchymal transition, an essential process in mammalian development but also a precursor for tumour cell invasion and metastasis. Thus, we uncover an unanticipated function of CENP-A over- expression to promote cell fate reprogramming, with important implications for development and tumour evolution. 1 Institut Curie, PSL Research University, CNRS, Sorbonne Université, Nuclear Dynamics Unit, Equipe Labellisée Ligue contre le Cancer, Paris, France. 2 Institut ✉ Curie, PSL Research University, Centre de Recherche, Sorbonne Université, Cell Biology and Cancer Unit, Paris, France. -
SORORIN and PLK1 As Potential Therapeutic Targets in Malignant Pleural Mesothelioma
INTERNATIONAL JOURNAL OF ONCOLOGY 49: 2411-2420, 2016 SORORIN and PLK1 as potential therapeutic targets in malignant pleural mesothelioma TATSUYA KATO1,2, DAIYOON LEE1, LICUN WU1, PRIYA PATEL1, AHN JIN YOUNG1, HIRONOBU WADA1, HSIN-PEI HU1, HIDEKI UJIIE1, MITSUHITO KAJI3, SATOSHI KANO4, SHINICHI MATSUGE5, HIROMITSU DOMEN2, HIROMI KANNO6, YUTAKA HATANAKA6, KANAKO C. HATANAKA6, KICHIZO KAGA2, YOSHIRO MATSUI2, YOSHIHIRO MATSUNO6, MARC DE PERROT1 and KAZUHIRO YASUFUKU1 1Division of Thoracic Surgery, Toronto General Hospital, University Health Network, Toronto, Canada; 2Department of Cardiovascular and Thoracic Surgery, Hokkaido University Graduate School of Medicine, Sapporo; 3Department of Thoracic Surgery, Sapporo Minami-sanjo Hospital, Sapporo; Departments of 4Pathology, and 5Surgery, Kinikyo-Chuo Hospital, Sapporo; 6Department of Surgical Pathology, Hokkaido University Hospital, Sapporo, Japan Received May 23, 2016; Accepted July 13, 2016 DOI: 10.3892/ijo.2016.3765 Abstract. Malignant pleural mesothelioma (MPM) is an PLK1 inhibitor induced drug-related adverse effects in several aggressive type of cancer of the thoracic cavity commonly clinical trials, our results suggest inhibition SORORIN-PLK1 associated with asbestos exposure and a high mortality rate. axis may hold promise for the treatment of MPMs. There is a need for new molecular targets for the develop- ment of more effective therapies for MPM. Using quantitative Introduction reverse-transcriptase polymerase chain reaction (qRT-PCR) and an RNA interference-based screening, we examined the Malignant pleural mesothelioma (MPM) from exposure to SORORIN gene as potential therapeutic targets for MPM asbestos is an aggressive tumor that arises from mesothelial in addition to the PLK1 gene, which is known for kinase of cells lining the intrathoracic cavities, and its worldwide inci- SORORIN.