The Role of Bone Morphogenetic Protein 7 (BMP-7) in Inflammation in Heart Diseases
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Spemann Organizer Transcriptome Induction by Early Beta-Catenin, Wnt
Spemann organizer transcriptome induction by early PNAS PLUS beta-catenin, Wnt, Nodal, and Siamois signals in Xenopus laevis Yi Dinga,b,1, Diego Plopera,b,1, Eric A. Sosaa,b, Gabriele Colozzaa,b, Yuki Moriyamaa,b, Maria D. J. Beniteza,b, Kelvin Zhanga,b, Daria Merkurjevc,d,e, and Edward M. De Robertisa,b,2 aHoward Hughes Medical Institute, University of California, Los Angeles, CA 90095-1662; bDepartment of Biological Chemistry, University of California, Los Angeles, CA 90095-1662; cDepartment of Medicine, University of California, Los Angeles, CA 90095-1662; dDepartment of Microbiology, University of California, Los Angeles, CA 90095-1662; and eDepartment of Human Genetics, University of California, Los Angeles, CA 90095-1662 Contributed by Edward M. De Robertis, February 24, 2017 (sent for review January 17, 2017; reviewed by Juan Larraín and Stefano Piccolo) The earliest event in Xenopus development is the dorsal accumu- Wnt8 mRNA leads to a dorsalized phenotype consisting entirely of lation of nuclear β-catenin under the influence of cytoplasmic de- head structures without trunks and a radial Spemann organizer terminants displaced by fertilization. In this study, a genome-wide (9–11). Similar dorsalizing effects are obtained by incubating approach was used to examine transcription of the 43,673 genes embryos in lithium chloride (LiCl) solution at the 32-cell stage annotated in the Xenopus laevis genome under a variety of con- (12). LiCl mimics the early Wnt signal by inhibiting the enzymatic ditions that inhibit or promote formation of the Spemann orga- activity of glycogen synthase kinase 3 (GSK3) (13), an enzyme nizer signaling center. -
Bmpr Encodes a Type I Bone Morphogenetic Protein Receptor That Is Essential for Gastrulation During Mouse Embryogenesis
Downloaded from genesdev.cshlp.org on October 8, 2021 - Published by Cold Spring Harbor Laboratory Press Bmpr encodes a type I bone morphogenetic protein receptor that is essential for gastrulation during mouse embryogenesis Yuji Mishina, ~ Atsushi Suzuki, 2 Naoto Ueno, 2 and Richard R. Behringer ~'3 1Department of Molecular Genetics, The University of Texas, M.D. Anderson Cancer Center, Houston, Texas 77030 USA; ~Faculty of Pharmaceutical Sciences, Hokkaido University, Sapporo 060, Japan Bone morphogenetic proteins (BMPs) are secreted proteins that interact with cell-surface receptors and are believed to play a variety of important roles during vertebrate embryogenesis. Bmpr, also known as ALK-3 and Brk-1, encodes a type I transforming growth factor-~ (TGF-[3) family receptor for BMP-2 and BMP-4. Bmpr is expressed ubiquitously during early mouse embryogenesis and in most adult mouse tissues. To study the function of Bmpr during mammalian development, we generated Bmpr-mutant mice. After embryonic day 9.5 (E9.5), no homozygous mutants were recovered from heterozygote matings. Homozygous mutants with morphological defects were first detected at E7.0 and were smaller than normal. Morphological and molecular examination demonstrated that no mesoderm had formed in the mutant embryos. The growth characteristics of homozygous mutant blastocysts cultured in vitro were indistinguishable from those of controls; however, embryonic ectoderm (epiblast) cell proliferation was reduced in all homozygous mutants at E6.5 before morphological abnormalities had become prominent. Teratomas arising from E7.0 mutant embryos contained derivatives from all three germ layers but were smaller and gave rise to fewer mesodermal cell types, such as muscle and cartilage, than controls. -
Redalyc.Possible Role of Noggin Gene in Mandibular Development
Universitas Odontológica ISSN: 0120-4319 [email protected] Pontificia Universidad Javeriana Colombia Gutiérrez Prieto, Sandra; Torres López, Diana; Gómez Rodríguez, Mariluz; García Robayo, Adriana Possible Role of Noggin Gene in Mandibular Development Universitas Odontológica, vol. 34, núm. 73, julio-diciembre, 2015, pp. 21-31 Pontificia Universidad Javeriana Bogotá, Colombia Available in: http://www.redalyc.org/articulo.oa?id=231247071014 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Possible Role of Noggin Gene in Mandibular Development Posible papel del gen noggin en el desarrollo mandibular Possível papel do gene noggin no desenvolvimento mandibular 21 Sandra Gutiérrez Prieto ABSTRACT Odontóloga, magistra y PhD en Background: Noggin (Nog) gene is one of the antagonists of bone morphogenic proteins (BMPs) Ciencias Biológicas, docente and its function is to modulate the signs. When Nog’s action is ineffective, an excessive activity investigadora del Centro de of BMPs occur causing serious developmental abnormalities. Studies have shown that Nog is Investigaciones Odontológicas, critical for chondrogenesis, osteogenesis, and joint training and appears to be involved in the 2027-3444 | e-ISSN 0120-4319 ISSN . Pontificia Universidad Javeriana, growth of craniofacial structures, including the jaw. There are in the literature a few studies Bogotá, Colombia. about the relationship between Nog and its role in mandibular development. Purpose: To r e - views the molecular factors involved in the jaw development. Method: Focusing primarily on Diana Torres López BMPs, their function, and signaling pathway as Nog regulates this path. -
BMP3 Suppresses Osteoblast Differentiation of Bone Marrow Stromal Cells Via Interaction with Acvr2b
MUShare Faculty Publications and Research College of Osteopathic Medicine 1-1-2012 BMP3 Suppresses Osteoblast Differentiation of Bone Marrow Stromal Cells Via Interaction With Acvr2b. Shoichiro Kokabu Laura Gamer Karen Cox Jonathan W. Lowery Ph.D. Marian University - Indianapolis, [email protected] Kunikazu Tsuji See next page for additional authors Follow this and additional works at: https://mushare.marian.edu/com_fp Part of the Cells Commons, and the Genetics and Genomics Commons Recommended Citation Kokabu S, Gamer L, Cox K, Lowery JW, Kunikazu T, Econimedes A, Katagiri T, Rosen V. “BMP3 suppresses osteoblast differentiation of bone marrow stromal cells via interaction with Acvr2b.” Mol Endocrinol. 2012;26(1):87-94. PMC3248326. PMID: 22074949. This Article is brought to you for free and open access by the College of Osteopathic Medicine at MUShare. It has been accepted for inclusion in Faculty Publications and Research by an authorized administrator of MUShare. For more information, please contact [email protected]. Authors Shoichiro Kokabu, Laura Gamer, Karen Cox, Jonathan W. Lowery Ph.D., Kunikazu Tsuji, Regina Raz, Aris Economides, Takenobu Katagiri, and Vicki Rosen This article is available at MUShare: https://mushare.marian.edu/com_fp/12 ORIGINAL RESEARCH BMP3 Suppresses Osteoblast Differentiation of Bone Marrow Stromal Cells via Interaction with Acvr2b Shoichiro Kokabu, Laura Gamer, Karen Cox, Jonathan Lowery, Kunikazu Tsuji, Regina Raz, Aris Economides, Takenobu Katagiri, and Vicki Rosen Department of Developmental Biology (S.K., L.G., K.C., J.L., V.R.), Harvard School of Dental Medicine, Boston, Massachusetts 02115; Section of Orthopedic Surgery (K.T.),Tokyo Medical and Dental University, Tokyo 113-8510, Japan; Regeneron Pharmaceuticals (R.R., A.E.), Tarrytown, New York 10591; and Division of Pathophysiology (T.K.), Saitama Medical University, Saitama 359-8513, Japan Enhancing bone morphogenetic protein (BMP) signaling increases bone formation in a variety of settings that target bone repair. -
Product Data Sheet
KAMIYA BIOMEDICAL COMPANY Rev. 082707 PRODUCT DATA SHEET Product: Bone Morphogenetic Protein Receptor Type IA (BMPR1A), (human recombinant) Cat. No.: BP-026 (10 µg) Synonyms: Reconstitution: BMPR-1A, BMP-R1A, BMPR1A, BMR1A, It is recommended to reconstitute the lyophilized CD292, CD-292, Serine/threonine-protein kinase recombinant human BMPR1A in sterile PBS at receptor R5, SKR5, Activin receptor-like kinase not less than 100 µg/mL, which can then be 3, ALK-3, ACVRLK3, EC 2.7.11.30, CD292 further diluted to other aqueous solutions. antigen. Storage: Background: Lyophilized protein is stable for at least 3 weeks The bone morphogenetic protein (BMP) at room temperature. Long term storage should receptors are a family of transmembrane be below -18 °C, desiccated. Upon serine/threonine kinases that include the type I reconstitution, human recombinant BMPR1A receptors BMPR1A and BMPR1B and the type II should be stored at 4°C between 2-7 days, and receptor BMPR2. These receptors are also for future use below -18°C. For long term closely related to the activin receptors, ACVR1 storage it is recommended to add a carrier and ACVR2. The ligands of these receptors are members of the TGF-beta superfamily. TGF- protein (0.1% HSA or BSA). Aliquot to avoid betas and activins transduce their signals freeze/thaw cycles. through the formation of heteromeric complexes with two different types of serine (threonine) Purity: kinase receptors: type I receptors of about 50-55 >90% determined by RP-HPLC, and SDS-PAGE. kDa and type II receptors of about 70-80 kDa. Type II receptors bind ligands in the absence of Biological Activity: type I receptors, but they require their respective Measured by its ability to inhibit recombinant type I receptors for signaling, whereas type I human BMP-2 induced alkaline phosphatase receptors require their respective type II production by C2C12 myogenic cells. -
In Vivo Imaging of Tgfβ Signalling Components Using Positron
REVIEWS Drug Discovery Today Volume 24, Number 12 December 2019 Reviews KEYNOTE REVIEW In vivo imaging of TGFb signalling components using positron emission tomography 1 1 2 Lonneke Rotteveel Lonneke Rotteveel , Alex J. Poot , Harm Jan Bogaard , received her MSc in drug 3 1 discovery and safety at the Peter ten Dijke , Adriaan A. Lammertsma and VU University in 1 Amsterdam. She is Albert D. Windhorst currently finishing her PhD at the VU University 1 Department of Radiology and Nuclear Medicine, Amsterdam UMC, location VUmc, Amsterdam, The Netherlands Medical Center (VUmc) 2 under the supervision of A. Pulmonary Medicine, Institute for Cardiovascular Research, Amsterdam UMC, location VUmc, Amsterdam, The Netherlands D. Windhorst and Adriaan A. Lammertsma. Her 3 research interest is on the development of positron Department of Cell and Chemical Biology, Oncode Institute, Leiden University Medical Center, Leiden, The emission tomography (PET) tracers that target Netherlands selectively the activin receptor-like kinase 5 in vitro and in vivo. Alex J. Poot obtained his The transforming growth factor b (TGFb) family of cytokines achieves PhD in medicinal chemistry homeostasis through a careful balance and crosstalk with complex from Utrecht University. As postdoctoral researcher at signalling pathways. Inappropriate activation or inhibition of this pathway the VUmc, Amsterdam, he and mutations in its components are related to diseases such as cancer, developed radiolabelled anticancer drugs for PET vascular diseases, and developmental disorders. Quantitative imaging of imaging. In 2014, he accepted a research expression levels of key regulators within this pathway using positron fellowship from Memorial Sloan Kettering Cancer 13 emission tomography (PET) can provide insights into the role of this Center, New York to develop C-labelled probes for tumour metabolism imaging with magnetic resonance in vivo pathway , providing information on underlying pathophysiological imaging (MRI). -
A Truncated Bone Morphogenetic Protein Receptor Affects Dorsal-Ventral Patterning in the Early Xenopus Embryo ATSUSHI SUZUKI*, R
Proc. Nati. Acad. Sci. USA Vol. 91, pp. 10255-10259, October 1994 Developmental Biology A truncated bone morphogenetic protein receptor affects dorsal-ventral patterning in the early Xenopus embryo ATSUSHI SUZUKI*, R. ScoTT THIESt, NOBORU YAMAJIt*, JEFFREY J. SONGt, JOHN M. WOZNEYt, KAZUO MURAKAMI§, AND NAOTO UENO*1 *Faculty of Pharmaceutical Sciences, Hokkaido University, Sapporo 060, Japan; tGenetics Institute Inc., 87 Cambridge Park Drive, Cambridge, MA 02140; tYamanouchi Pharmaceutical Co., Ltd., Tokyo 103, Japan; and Institute of Applied Biochemistry, University of Tsukuba, Tsukuba, Ibaraki 305, Japan Communicated by Igor B. Dawid, July 13, 1994 ABSTRACT Bone morphogenetic proteins (BMPs), which corresponding proteins are present in developing Xenopus are members of the trnsming growth factor 13 (TGF-I) embryos, and overexpression of BMP4 in the embryos superfamily, have been implicated in bone formation and the enhances the formation of ventral mesoderm (8-11). Animal regulation ofearly development. To better understand the roles cap ectoderm treated with a combination of BMP4 and of BMPs in Xenopus laevis embryogenesis, we have cloned a activin also results in the formation of ventral mesoderm, cDNA coding for a serine/threonine kinase receptor that binds suggesting that BMP-4 is a ventralizing factor that acts by BMP-2 and BMP-4. To analyze its function, we attempted to overriding the dorsalizing signal provided by activin (8, 9). block the BMP signaling pathway in Xenopus embryos by using Therefore, activin and BMP-4 are thought to play important a domint-negative mutant of the BMP receptor. When the roles in the dorsal-ventral patterning of embryonic meso- mutant receptor lacking the putative serine/threonine kinase derm. -
Integrative Differential Expression and Gene Set Enrichment Analysis Using Summary Statistics for Scrna-Seq Studies
ARTICLE https://doi.org/10.1038/s41467-020-15298-6 OPEN Integrative differential expression and gene set enrichment analysis using summary statistics for scRNA-seq studies ✉ Ying Ma 1,7, Shiquan Sun 1,7, Xuequn Shang2, Evan T. Keller 3, Mengjie Chen 4,5 & Xiang Zhou 1,6 Differential expression (DE) analysis and gene set enrichment (GSE) analysis are commonly applied in single cell RNA sequencing (scRNA-seq) studies. Here, we develop an integrative 1234567890():,; and scalable computational method, iDEA, to perform joint DE and GSE analysis through a hierarchical Bayesian framework. By integrating DE and GSE analyses, iDEA can improve the power and consistency of DE analysis and the accuracy of GSE analysis. Importantly, iDEA uses only DE summary statistics as input, enabling effective data modeling through com- plementing and pairing with various existing DE methods. We illustrate the benefits of iDEA with extensive simulations. We also apply iDEA to analyze three scRNA-seq data sets, where iDEA achieves up to five-fold power gain over existing GSE methods and up to 64% power gain over existing DE methods. The power gain brought by iDEA allows us to identify many pathways that would not be identified by existing approaches in these data. 1 Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA. 2 School of Computer Science, Northwestern Polytechnical University, Xi’an, Shaanxi 710072, P.R. China. 3 Department of Urology, University of Michigan, Ann Arbor, MI 48109, USA. 4 Department of Human Genetics, University of Chicago, Chicago, IL 60637, USA. 5 Section of Genetic Medicine, Department of Medicine, University of Chicago, Chicago, IL 60637, USA. -
Role of TGF-Β3 in the Regulation of Immune Responses T
Role of TGF-β3 in the regulation of immune responses T. Okamura1,2, K. Morita1, Y. Iwasaki1, M. Inoue1, T. Komai1, K. Fujio1, K. Yamamoto1 1Department of Allergy and ABSTRACT ences, indicating their non-redundancy Rheumatology, Graduate School of Transforming growth factor-betas (12-16). The TGF-βs have opposite ef- Medicine, The University of Tokyo, (TGF-βs) are multifunctional cytokines fects on tissue fibrosis. Wound-healing Tokyo, Japan; that have been implicated in the regu- experiments revealed that TGF-β1 2Max Planck-The University of Tokyo Center for Integrative Inflammology, lation of a broad range of biological and TGF-β2 cause fibrotic scarring The University of Tokyo, Tokyo, Japan. processes, including cell proliferation, responses and that TGF-β3 induces a Tomohisa Okamura, MD, PhD cell survival, and cell differentiation. scar-free response (17). Both TGF-β1 Kaoru Morita, MD The three isoforms identified in mam- and -β2 activate the collagen α2 (I) Yukiko Iwasaki, MD, PhD mals, TGF-β1, TGF-β2, and TGF-β3, gene promoter, resulting in increased Mariko Inoue, MD have high sequence homology, bind to collagen synthesis (18). It was also re- Toshihiko Komai, MD the same receptors, and show similar ported that TGF-β1, but not TGF-β3, is Keishi Fujio, MD, PhD biological functions in many in vitro a crucial factor in the development of Kazuhiko Yamamoto, MD, PhD studies. However, analysis of the in vivo pulmonary fibrosis (19). Most of the in- Please address correspondence to: functions of the three isoforms and mice formation on the immunological activ- Keishi Fujio, MD, PhD, deficient for each cytokine reveals strik- Department of Allergy and ity of TGF-βs derives from studies of Rheumatology, ing differences, illustrating their unique TGF-β1 and, in part, TGF-β2, whereas Graduate School of Medicine, biological importance and functional recent investigations have begun to il- The University of Tokyo, non-redundancy. -
Follistatin and Noggin Are Excluded from the Zebrafish Organizer
DEVELOPMENTAL BIOLOGY 204, 488–507 (1998) ARTICLE NO. DB989003 Follistatin and Noggin Are Excluded from the Zebrafish Organizer Hermann Bauer,* Andrea Meier,* Marc Hild,* Scott Stachel,†,1 Aris Economides,‡ Dennis Hazelett,† Richard M. Harland,† and Matthias Hammerschmidt*,2 *Max-Planck Institut fu¨r Immunbiologie, Stu¨beweg 51, 79108 Freiburg, Germany; †Department of Molecular and Cell Biology, University of California, 401 Barker Hall 3204, Berkeley, California 94720-3204; and ‡Regeneron Pharmaceuticals, Inc., 777 Old Saw Mill River Road, Tarrytown, New York 10591-6707 The patterning activity of the Spemann organizer in early amphibian embryos has been characterized by a number of organizer-specific secreted proteins including Chordin, Noggin, and Follistatin, which all share the same inductive properties. They can neuralize ectoderm and dorsalize ventral mesoderm by blocking the ventralizing signals Bmp2 and Bmp4. In the zebrafish, null mutations in the chordin gene, named chordino, lead to a severe reduction of organizer activity, indicating that Chordino is an essential, but not the only, inductive signal generated by the zebrafish organizer. A second gene required for zebrafish organizer function is mercedes, but the molecular nature of its product is not known as yet. To investigate whether and how Follistatin and Noggin are involved in dorsoventral (D-V) patterning of the zebrafish embryo, we have now isolated and characterized their zebrafish homologues. Overexpression studies demonstrate that both proteins have the same dorsalizing properties as their Xenopus homologues. However, unlike the Xenopus genes, zebrafish follistatin and noggin are not expressed in the organizer region, nor are they linked to the mercedes mutation. Expression of both genes starts at midgastrula stages. -
Nodal Signaling Is Required for Mesodermal and Ventral but Not For
© 2015. Published by The Company of Biologists Ltd | Biology Open (2015) 4, 830-842 doi:10.1242/bio.011809 RESEARCH ARTICLE Nodal signaling is required for mesodermal and ventral but not for dorsal fates in the indirect developing hemichordate, Ptychodera flava Eric Röttinger1,2,3,*, Timothy Q. DuBuc4, Aldine R. Amiel1,2,3 and Mark Q. Martindale4 ABSTRACT early fate maps of direct and indirect developing hemichordates, are Nodal signaling plays crucial roles in vertebrate developmental similar to those of indirect-developing echinoids (Colwin and processes such as endoderm and mesoderm formation, and axial Colwin, 1951; Cameron et al., 1987; Cameron et al., 1989; Cameron patterning events along the anteroposterior, dorsoventral and left- and Davidson, 1991; Henry et al., 2001). While the bilaterally right axes. In echinoderms, Nodal plays an essential role in the symmetric echinoderm larvae exhibit strong similarities to establishment of the dorsoventral axis and left-right asymmetry, but chordates in axial patterning and germ layer specification events, not in endoderm or mesoderm induction. In protostomes, Nodal adult body plan comparisons in echinoderms have been difficult due signaling appears to be involved only in establishing left-right to their unique adult pentaradial symmetry. However, both the larval asymmetry. Hence, it is hypothesized that Nodal signaling has and adult body plans of enteropneust hemichordates are bilaterally been co-opted to pattern the dorsoventral axis of deuterostomes and symmetric, and larvae from indirect developing hemichordates for endoderm, mesoderm formation as well as anteroposterior such as Ptychodera flava (P. flava) share similarities in patterning in chordates. Hemichordata, together with echinoderms, morphology, axial organization, and developmental fate map with represent the sister taxon to chordates. -
Secreted Bone Morphogenetic Protein Antagonists of the Chordin Family
Article in press - uncorrected proof BioMol Concepts, Vol. 1 (2010), pp. 297–304 • Copyright ᮊ by Walter de Gruyter • Berlin • New York. DOI 10.1515/BMC.2010.026 Review Secreted bone morphogenetic protein antagonists of the Chordin family Nobuyuki Itoha,* and Hiroya Ohtaa factor b (TGFb) superfamily. Originally identified in the Department of Genetic Biochemistry, Kyoto University protein extracts of deminerized bone, BMPs promote endo- Graduate School of Pharmaceutical Sciences, Sakyo, chondral bone formation. However, they also play diverse Kyoto 606-8501, Japan roles in developmental and metabolic processes at the embry- onic and postnatal stages. BMPs are secreted as dimers and * Corresponding author activate specific Ser/Thr kinase receptors at cell surfaces. e-mail: [email protected] The activated receptors propagate BMP signals via the phos- phorylation of Smad proteins and other non-canonical intra- Abstract cellular effectors (1, 2). The actions of BMPs are inhibited by several secreted Chordin, Chordin-like 1, and Chordin-like 2 are secreted BMP antagonists. Most extracellular BMP antagonists inhibit bone morphogenetic protein (BMP) antagonists with highly BMPs by binding to them. The amino acid sequences of conserved Chordin-like cysteine-rich domains. Recently, secreted BMP antagonists are characterized by cysteine-rich Brorin and Brorin-like have been identified as new Chordin- (CR) domains. On the basis of the spacing of cysteine resi- like BMP antagonists. A Chordin ortholog, Short gastrula- dues in the CR domains, secreted BMP antagonists can be tion, has been identified in Drosophila, a protostome, but not classified into five groups; the Dan family, Twisted gastru- other orthologs.