Aquaculture Journals – Table of Contents

With the financial support of

Flemish Interuniversity Councel

Aquaculture Journals – Table of Contents January 2013

Information of interest !! Animal Feed Science and Technology * Antimicrobial Agents and Chemotherapy Applied and Environmental Microbiology Applied Microbiology and Biotechnology Aqua Aquaculture * Aquaculture Economics & Management Aquacultural Engineering * Aquaculture International * Aquaculture Nutrition * Aquaculture Research * Current Opinion in Microbiology * Diseases of Aquatic Organisms * Fish & Shellfish Immunology * Fisheries Science * Hydrobiologia * Indian Journal of Fisheries International Journal of Aquatic Science Journal of Applied Ichthyology * Journal of Applied Microbiology * Journal of Applied Phycology Journal of Aquaculture Research and Development Journal of Experimental Marine Biology and Ecology * Journal of Fish Biology Journal of Fish Diseases * Journal of Invertebrate Pathology* Journal of Microbial Ecology*

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Journal of Microbiological Methods Journal of Shellfish Research Journal of the World Aquaculture Society Letters in Applied Microbiology * Marine Biology * Marine Biotechnology * Nippon Suisan Gakkaishi Reviews in Aquaculture Trends in Biotechnology * Trends in Microbiology * * full text available

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BibMail Information of Interest - January, 2013

 Interesting videos about salmon and cod farming in Norway  2011 Workshop Proceedings “Developing Tilapia Aquaculture in Haiti: Opportunities, Constraints and Action Items”  Sustainability assessment tools to support aquaculture development: review paper in Journal of Cleaner Production  United States-Japan Natural Resources Panel on Aquaculture - 40th Scientific Symposium “Hatchery Technology for High Quality Juvenile Production” (Honolulu, HI-USA, October 2012): book of abstracts  Very useful website for free conversion of different file formats  2nd Danish Macro Algae Conference (September 2012) presentations

VLIZ Library Acquisitions no

 559 October19, 2012

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VOLUME 178, PART 1-2, NOVEMBER 2012 Website

Research articles

Ruminants

In vitro ruminal fermentation, protein and carbohydrate fractionation, methane production and prediction of twelve commonly used Indian green forages Sultan Singh, B.P. Kushwaha, S.K. Nag, A.K. Mishra, A. Singh, U.Y. Anele Show preview | PDF (306 K) | Related articles | Related reference work articles

Modeling nutrient availability of alfalfa hay harvested at three stages of maturity and in the afternoon and morning in dairy cows M. Yari, R. Valizadeh, A.A. Naserian, A. Jonker, P. Yu Show preview | PDF (368 K) | Related articles | Related reference work articles

Effects of wet corn gluten feed and yellow grease on digestive function of cattle fed steam-flaked corn-based finishing diets L.K. Conway, D.M. Hallford, S.A. Soto-Navarro Show preview | PDF (230 K) | Related articles | Related reference work articles

Integration of extruded linseed into dairy sheep diets: Effects on milk composition and quality and sensorial properties of Pecorino cheese L. Mughetti, F. Sinesio, G. Acuti, C. Antonini, E. Moneta, M. Peparaio, M. Trabalza-Marinucci Show preview | PDF (534 K) | Related articles | Related reference work articles

The effect of abrupt or gradual introduction to pasture after calving and supplementation with Saccharomyces cerevisiae (Strain 1026) on ruminal pH and fermentation in early lactation dairy cows R.M. Al Ibrahim, V.P. Gath, D.P. Campion, C. McCarney, P. Duffy, F.J. Mulligan Show preview | PDF (358 K) | Related articles | Related reference work articles

Synergistic effects of mixing cocksfoot and sainfoin on in vitro rumen fermentation. Role of condensed tannins Vincent Niderkorn, Irene Mueller-Harvey, Aline Le Morvan, Jocelyne Aufrère Show preview | PDF (283 K) | Related articles | Related reference work articles

Inclusion of selected levels of Australian native plant Eremophila glabra in fermentation substrate can influence events leading to rumen lactic acidosis in in vitro and in vivo carbohydrate-challenged systems Z. Durmic, P.G. Hutton, K.Murray, P.E. Vercoe Show preview | PDF (301 K) | Related articles | Related reference work articles

Non-ruminants

Dietary iron effects on broiler breeder performance and egg iron contents F. Bess, S.L. Vieira, A. Favero, R.A. Cruz, P.C. Nascimento Show preview | PDF (222 K) | Related articles | Related reference work articles

Effects of the dietary level and source of sodium on growth performance, gastrointestinal digestion and meat characteristics in turkeys J. Jankowski, J. Juśkiewicz, K. Lichtorowicz, Z. Zduńczyk

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Show preview | PDF (288 K) | Related articles | Related reference work articles

Effects of autoclaving and sodium diformate supplementation to diets on amino acid composition, in vivo digestibility in mink (Neovison vison) and in vitro bioavailability using digestive enzymes from Atlantic salmon (Salmo salar) Thea Morken, Francisco Javier Moyano, Lorenzo Márquez, Mette Sørensen, Liv Torunn Mydland, Margareth Øverland Show preview | PDF (409 K) | Related articles | Related reference work articles

Changes in intestinal morphology and amino acid catabolism in common carp at mildly elevated temperature as affected by dietary mannanoligosaccharides F. Geda, A. Rekecki, A. Decostere, P. Bossier, B. Wuyts, I.D. Kalmar, G.P.J. Janssens Show preview | PDF (501 K) | Related articles | Related reference work articles

Correlation between ileal digestibility of amino acids and chemical composition of soybean meals in broilers at 21 days of age M. Frikha, M.P. Serrano, D.G. Valencia, P.G. Rebollar, J. Fickler, G.G. Mateos Show preview | PDF (376 K) | Related articles | Related reference work articles

Short communication

Heat production determined by the RQ and CN methods, fasting heat production and effect of the energy intake on substrates oxidation of indigenous Manchega sheep C. Fernández, M.C. López, M. Lachica Show preview | PDF (176 K) | Related articles | Related reference work articles

Book review

T.L.J. Lawrence, V.R. Fowler, J.E. Novakofski, Editors, Growth of Farm Animals 3rd ed. (2012) CAB International,Wallingford (UK) and Cambridge (USA) 352 pp., Hardback; 149 US$, 92 £, 115 €. ISBN-13: 978 1 78064 146 1. Gerhard Flachowsky Show preview | PDF (116 K) | Related articles | Related reference work articles

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VOLUME 178, PART 3-4, DECEMBER 2012 Website

Research articles

Review

Improving digestive utilization of fiber-rich feedstuffs in pigs and poultry by processing and enzyme technologies: A review S. de Vries, A.M. Pustjens, H.A. Schols, W.H. Hendriks, W.J.J. Gerrits Show preview | PDF (518 K) | Related articles | Related reference work articles

Ruminants

Eugenol for dairy cows fed low or high concentrate diets: Effects on digestion, ruminal fermentation characteristics, rumen microbial populations and milk fatty acid profile C. Benchaar, A. Lettat, F. Hassanat, W.Z. Yang, R.J. Forster, H.V. Petit, P.Y. Chouinard

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Non-ruminants

Effects of iron injection at birth on neonatal iron status in young pigs from first- parity sows fed delta-aminolevulinic acid J.P. Wang, I.H. Kim Show preview | PDF (242 K) | Related articles | Related reference work articles

Effects of montmorillonite clay on growth performance, nutrient digestibility, vulva size, faecal microflora, and oxidative stress in weaning gilts challenged with zearalenone J.P. Wang, F. Chi, I.H. Kim Show preview | PDF (282 K) | Related articles | Related reference work articles

Growth performance, intestinal microflora, plasma fatty acid profile in broiler chickens fed herbal plant (Euphorbia hirta) and mix of acidifiers S.R. Hashemi, I. Zulkifli, H. Davoodi, Z. Zunita, M. Ebrahimi Show preview | PDF (278 K) | Related articles | Related reference work articles

The effect of freezing on the fermentative activity of equine faecal inocula for use in an in vitro gas production technique Jo-Anne M.D. Murray, Patricia McMullin, Ian Handel, Peter M. Hastie Show preview | PDF (384 K) | Related articles | Related reference work articles

Effect of collection time on the fermentative activity of microbes in equine faeces G. Desrousseaux, A.S. Santos, W.F. Pellikaan, A.F.B. Van der Poel, J.W. Cone, C.M.V. Guedes, L.M.M. Ferreira, M.A.M. Rodrigues Show preview | PDF (235 K) | Related articles | Related reference work articles

General topics

Co-occurrence and statistical correlations between mycotoxins in feedstuffs collected in the Asia–Oceania in 2010 Radka Borutova, Yunior Acosta Aragon, Karin Nährer, Franz Berthiller Show preview | PDF (265 K) | Related articles | Related reference work articles

Short communication

Effects of thyme and oregano on growth performance of broilers from 4 to 42 days of age and on microbial counts in crop, small intestine and caecum of 42- day-old broilers A.A.A. Abdel-Wareth, S. Kehraus, F. Hippenstiel, K.-H. Südekum Show preview | PDF (196 K) | Related articles | Related reference work articles

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VOLUME 56, PART 12, December 2012 Website

Research articles

Minireview

Importance of the Genetic Diversity within the Mycobacterium tuberculosis Complex for the Development of Novel Antibiotics and Diagnostic Tests of Drug Resistance Claudio U. Köser, Silke Feuerriegel, David K. Summers, John A. C. Archer, and Stefan Niemann Abstract Full Text PDF

Chemistry; Biosynthesis

Structure-Activity Relationships among the Kanamycin Aminoglycosides: Role of Ring I Hydroxyl and Amino Groups Sumantha Salian, Tanja Matt, Rashid Akbergenov, Shinde Harish, Martin Meyer, Stefan Duscha, Dmitri Shcherbakov, Bruno B. Bernet, Andrea Vasella, Eric Westhof, and Erik C. Böttger Abstract Full Text ,PDF Figures Supplemental material

Mechanisms of Action: Physiological Effects

Effects of 14-Alpha-Lipoyl Andrographolide on Quorum Sensing in Pseudomonas aeruginosa Li Ma, Xiangyang Liu, Haihua Liang, Yizhou Che, Caixia Chen, Huanqin Dai, Ke Yu, Mei Liu, Luyan Ma, Ching-Hong Yang, Fuhang Song, Yuqiang Wang, and Lixin Zhang Abstract Full Text PDF Figures Supplemental material

Mechanisms of Resistance

Chitin Synthases with a Myosin Motor-Like Domain Control the Resistance of Aspergillus fumigatus to Echinocandins Cristina Jiménez-Ortigosa, Vishukumar Aimanianda, Laetitia Muszkieta, Isabelle Mouyna, David Alsteens, Stéphane Pire, Remi Beau, Sven Krappmann, Anne Beauvais, Yves F. Dufrêne, César Roncero, and Jean-Paul Latgé Abstract Full Text PDF Figures Supplemental material

Genetic and Biochemical Characterization of an Acquired Subgroup B3 Metallo- β-Lactamase Gene, blaAIM-1, and Its Unique Genetic Context in Pseudomonas aeruginosa from Australia Dongeun Yong, Mark A. Toleman, Jan Bell, Brett Ritchie, Rachael Pratt, Henry Ryley, and Timothy R. Walsh Abstract Full Text PDF Figures

β-Lactams Increase the Antibacterial Activity of Daptomycin against Clinical Methicillin-Resistant Staphylococcus aureus Strains and Prevent Selection of Daptomycin-Resistant Derivatives Shrenik Mehta, Christopher Singh, Konrad B. Plata, Palas K. Chanda, Arundhati Paul, Sarah Riosa, Roberto R. Rosato, and Adriana E. Rosato Abstract Full Text PDF Figures Supplemental material

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The Two-Component System CprRS Senses Cationic Peptides and Triggers Adaptive Resistance in Pseudomonas aeruginosa Independently of ParRS Lucía Fernández, Håvard Jenssen, Manjeet Bains, Irith Wiegand, W. James Gooderham, and Robert E. W. Hancock Abstract Full Text PDF Figures

Frequency, Spectrum, and Nonzero Fitness Costs of Resistance to Myxopyronin in Staphylococcus aureus Aashish Srivastava, David Degen, Yon W. Ebright, and Richard H. Ebright Abstract Full Text PDF Figures

Effect of Transcriptional Activators SoxS, RobA, and RamA on Expression of Multidrug Efflux Pump AcrAB-TolC in Enterobacter cloacae Astrid Pérez, Margarita Poza, Jesús Aranda, Cristina Latasa, Francisco Javier Medrano, María Tomás, Antonio Romero, Iñigo Lasa, and Germán Bou Abstract Full Text PDF Figures

Fks1 and Fks2 Are Functionally Redundant but Differentially Regulated in Candida glabrata: Implications for Echinocandin Resistance Santosh K. Katiyar, Ana Alastruey-Izquierdo, Kelley R. Healey, Michael E. Johnson, David S. Perlin, and Thomas D. Edlind Abstract Full Text PDF Figures

Clinically Relevant Gram-Negative Resistance Mechanisms Have No Effect on the Efficacy of MC-1, a Novel Siderophore-Conjugated Monocarbam Craig J. McPherson, Lisa M. Aschenbrenner, Brian M. Lacey, Kelly C. Fahnoe, Margaret M. Lemmon, Steven M. Finegan, Baswanth Tadakamalla, John P. O'Donnell, John P. Mueller, and Andrew P. Tomaras Abstract Full Text PDF Figures Supplemental material

The Inactivation of Intrinsic Antibiotic Resistance Determinants Widens the Mutant Selection Window for Quinolones in Stenotrophomonas maltophilia Guillermo García-León, María B. Sánchez, and José L. Martínez Abstract Full Text PDF Figures

The Sequence-Activity Relationship between Metallo-β-Lactamases IMP-1, IMP- 6, and IMP-25 Suggests an Evolutionary Adaptation to Meropenem Exposure Eleanor M. Liu, Kevin M. Pegg, and Peter Oelschlaeger Abstract Full Text PDF Figures

Two Clinical Isolates of Candida glabrata Exhibiting Reduced Sensitivity to Amphotericin B Both Harbor Mutations in ERG2 Claire M. Hull, Oliver Bader, Josie E. Parker, Michael Weig, Uwe Gross, Andrew G. S. Warrilow, Diane E. Kelly, and Steven L. Kelly Abstract Full Text PDF Figures

ICESp1116, the Genetic Element Responsible for erm(B)-Mediated, Inducible Resistance to Erythromycin in Streptococcus pyogenes Andrea Brenciani, Erika Tiberi, Eleonora Morici, Erman Oryaşın, Eleonora Giovanetti, and Pietro E. Varaldo Abstract Full Text PDF Figures Supplemental material

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Susceptibility

Ceftaroline versus Isolates from Animal Bite Wounds: Comparative In Vitro Activities against 243 Isolates, Including 156 Pasteurella Species Isolates Ellie J. C. Goldstein, Diane M. Citron, C. Vreni Merriam, and Kerin L. Tyrrell Abstract Full Text PDF

In Vitro Synergy between Clofazimine and Amikacin in Treatment of Nontuberculous Mycobacterial Disease Jakko van Ingen, Sarah E. Totten, Niels K. Helstrom, Leonid B. Heifets, Martin J. Boeree,and Charles L. Daley Abstract Full Text PDF

In Vitro Activities of Antibiotics and Antimicrobial Cationic Peptides Alone and in Combination against Methicillin-Resistant Staphylococcus aureus Biofilms Emel Mataraci and Sibel Dosler Abstract Full Text PDF Figures

Differences in the Frequency of 23S rRNA Gene Mutations in Mycoplasma pneumoniae between Children and Adults with Community-Acquired Pneumonia: Clinical Impact of Mutations Conferring Macrolide Resistance Soo Jin Yoo, Hyo-Bin Kim, Sang-Ho Choi, Sang-Oh Lee, Sung-Han Kim, Sang-Bum Hong, Heungsup Sung, and Mi-Na Kim Abstract Full Text PDF

Screening of Antifungal Azole Drugs and Agrochemicals with an Adapted alamarBlue-Based Assay Demonstrates Antibacterial Activity of Croconazole against Mycobacterium ulcerans Nicole Scherr, Katharina Röltgen, Matthias Witschel, and Gerd Pluschke Abstract Full Text PDF Figures Supplemental material

Interaction of the Echinocandin Caspofungin with Amphotericin B or Voriconazole against Aspergillus Biofilms In Vitro Weixia Liu, Lijuan Li, Yi Sun, Wei Chen, Zhe Wan, Ruoyu Li, and Wei Liu Abstract Full Text PDF Figures Supplemental material

Antiviral Agents

Identification of Hepatitis C Virus Inhibitors Targeting Different Aspects of Infection Using a Cell-Based Assay Xuemei Yu, Bruno Sainz Jr., Pavel A. Petukhov, and Susan L. Uprichard Abstract Full Text PDF Figures Supplemental material

Evaluation of Single and Combination Therapies with Tenofovir Disoproxil Fumarate and Emtricitabine In Vitro and in a Robust Mouse Model Supporting High Levels of Hepatitis B Virus Replication Raymond F. Schinazi, Leda Bassit, Marcia M. Clayton, Bill Sun, James J. Kohler, Aleksandr Obikhod, Alla Arzumanyan, and Mark A. Feitelson Abstract Full Text PDF Figures

A 90-Day Tenofovir Reservoir Intravaginal Ring for Mucosal HIV Prophylaxis Todd J. Johnson, Meredith R. Clark, Theodore H. Albright, Joel S. Nebeker, Anthony L. Tuitupou, Justin T. Clark, Judit Fabian, R. Tyler McCabe, Neelima Chandra, Gustavo F. Doncel, David R. Friend, and Patrick F. Kiser Abstract Full Text PDF Figures Supplemental material

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Exacerbation of Influenza Virus Infections in Mice by Intranasal Treatments and Implications for Evaluation of Antiviral Drugs Donald F. Smee, Mark von Itzstein, Beenu Bhatt, and E. Bart Tarbet Abstract Full Text PDF Figures

Short-Term Monotherapy with IDX184, a Liver-Targeted Nucleotide Polymerase Inhibitor, in Patients with Chronic Hepatitis C Virus Infection Jacob Lalezari, David Asmuth, Arnaldo Casiró, Hugo Vargas, Shannon Lawrence, Gloria Dubuc-Patrick, Jie Chen, Joseph McCarville, Keith Pietropaolo, Xiao-Jian Zhou, John Sullivan-Bólyai, and Douglas Mayers Abstract Full Text PDF Figures

Liposome-Mediated Delivery of Iminosugars Enhances Efficacy against Dengue Virus In Vivo Joanna L. Miller, Ruben Lachica, Andrew C. Sayce, James P. Williams, Manisha Bapat, Raymond Dwek, P. Robert Beatty, Eva Harris, and Nicole Zitzmann Abstract Full Text PDF Figures Supplemental material

Epidemiology and Surveillance

Rapid Identification of International Multidrug-Resistant Pseudomonas aeruginosa Clones by Multiple-Locus Variable Number of Tandem Repeats Analysis and Investigation of Their Susceptibility to Lytic Bacteriophages Jérôme Larché, Flavie Pouillot, Christiane Essoh, Balázs Libisch, Monica Straut, Je Chul Lee, Charles Soler, Richard Lamarca, Elodie Gleize, Jérôme Gabard, Gilles Vergnaud, and Christine Pourcel Abstract Full Text PDF Figures Supplemental material

Comparison of Genospecies and Antimicrobial Resistance Profiles of Isolates in the Acinetobacter calcoaceticus-Acinetobacter baumannii Complex from Various Clinical Specimens Ni Tien, Bang-Jau You, Hui-Lan Chang, Hsiu-Shen Lin, Chin-Yi Lee, Tung-Ching Chung, Jang- Jih Lu, and Chao-Chin Chang Abstract Full Text PDF

Genetic Markers of Widespread Extensively Drug-Resistant Pseudomonas aeruginosa High-Risk Clones Gabriel Cabot, Alain A. Ocampo-Sosa, M. Angeles Domínguez, Juan F. Gago, Carlos Juan, Fe Tubau, Cristina Rodríguez, Bartolomé Moyà, Carmen Peña, Luis Martínez-Martínez, and Antonio Oliver, on behalf of the Spanish Network for Research in Infectious Diseases (REIPI) Abstract Full Text PDF Figures

Multiresistant Uropathogenic Escherichia coli from a Region in India Where Urinary Tract Infections Are Endemic: Genotypic and Phenotypic Characteristics of Sequence Type 131 Isolates of the CTX-M-15 Extended- Spectrum-β-Lactamase-Producing Lineage Arif Hussain, Christa Ewers, Nishant Nandanwar, Sebastian Guenther, Savita Jadhav, Lothar H. Wieler, and Niyaz Ahmed Abstract Full Text PDF Figures

Identification of VanN-Type Vancomycin Resistance in an Enterococcus faecium Isolate from Chicken Meat in Japan

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Takahiro Nomura, Koichi Tanimoto, Keigo Shibayama, Yoshichika Arakawa, Shuhei Fujimoto, Yasuyoshi Ike, and Haruyoshi Tomita Abstract Full Text PDF Figures Supplemental material

Rapid Identification of Carbapenemase Types in Enterobacteriaceae and Pseudomonas spp. by Using a Biochemical Test Laurent Dortet, Laurent Poirel, and Patrice Nordmann Abstract Full Text PDF Figures

Experimental Therapeutics

Bacterial Resistance to Antisense Peptide Phosphorodiamidate Morpholino Oligomers Susan E. Puckett, Kaleb A. Reese, Georgi M. Mitev, Valerie Mullen, Rudd C. Johnson, Kyle R. Pomraning, Brett L. Mellbye, Lucas D. Tilley, Patrick L. Iversen, Michael Freitag, and Bruce L. Geller Abstract Full Text PDF Figures

Novel Antibiofilm Chemotherapy Targets Exopolysaccharide Synthesis and Stress Tolerance in Streptococcus mutans To Modulate Virulence Expression In Vivo Megan L. Falsetta, Marlise I. Klein, José A. Lemos, Bruno B. Silva, Senyo Agidi, Kathy K. Scott-Anne, and Hyun Koo Abstract Full Text PDF Figures Supplemental material

Identification and Evaluation of Twin-Arginine Translocase Inhibitors Michael L. Vasil, Andrew P. Tomaras, and Arthur E. Pritchard Abstract Full Text PDF Figures Supplemental material

Virulent Bacteriophages Can Target O104:H4 Enteroaggregative Escherichia coli in the Mouse Intestine Damien Maura, Matthieu Galtier, Chantal Le Bouguénec, and Laurent Debarbieux Abstract Full Text PDF Figures

Noninvasive Determination of 2-[18F]-Fluoroisonicotinic Acid Hydrazide Pharmacokinetics by Positron Emission Tomography in Mycobacterium tuberculosis-Infected Mice E. A. Weinstein, L. Liu, A. A. Ordonez, H. Wang, J. M. Hooker, P. J. Tonge, and S. K. Jain Abstract Full Text PDF Figures Supplemental material

Ceftobiprole Efficacy In Vitro against Panton-Valentine Leukocidin Production and In Vivo against Community-Associated Methicillin-Resistant Staphylococcus aureus Osteomyelitis in Rabbits Azzam Saleh-Mghir, Oana Dumitrescu, Aurélien Dinh, Yassine Boutrad, Laurent Massias, Émilie Martin, François Vandenesch, Jérôme Etienne, Gérard Lina, and Anne Claude Crémieux Abstract Full Text PDF Figures OPEN ACCESS

Full and Broad-Spectrum In Vivo Eradication of Catheter-Associated Biofilms Using Gentamicin-EDTA Antibiotic Lock Therapy Ashwini Chauhan, David Lebeaux, Jean-Marc Ghigo, and Christophe Beloin Abstract Full Text PDF Figures

Targeting Essential Genes in Salmonella enterica Serovar Typhimurium with Antisense Peptide Nucleic Acid

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Muhammad A. Soofi and Mohamed N. Seleem Abstract Full Text PDF

Activity of Moxifloxacin, Imipenem, and Ertapenem against Escherichia coli, Enterobacter cloacae, Enterococcus faecalis, and Bacteroides fragilis in Monocultures and Mixed Cultures in an In Vitro Pharmacokinetic/Pharmacodynamic Model Simulating Concentrations in the Human Pancreas Sabine Schubert and Axel Dalhoff Abstract Full Text PDF

Clinical Therapeutics

Prevention and Treatment of Virulent Bacterial Biofilms with an Enzymatic Nitric Oxide-Releasing Dressing Imran Sulemankhil, Jorge Gabriel Ganopolsky, Christopher Anthony Dieni, Andrei Florin Dan, Mitchell Lawrence Jones, nd Satya Prakash Abstract Full Text PDF Figures

Efficacy of Ceftaroline Fosamil in a Staphylococcal Murine Pneumonia Model Amira A. Bhalodi, Jared L. Crandon, Donald Biek, and David P. Nicolau Abstract Full Text PDF Figures

Effect of Continuous Venovenous Hemofiltration Dose on Achievement of Adequate Vancomycin Trough Concentrations Erin N. Frazee, Philip J. Kuper, Garrett E. Schramm, Scott L. Larson, Kianoush B. Kashani, Douglas R. Osmon, and Nelson Leung Antimicrob. Agents Chemother. December 2012 56:6181-6185; published ahead of print 17 September 2012 , doi:10.1128/AAC.00459-12 Abstract Full Text PDF Figures

Population-Based Study of the Increased Incidence of Skin and Soft Tissue Infections and Associated Antimicrobial Use Fawziah Marra, David M. Patrick, Mei Chong, Rachel McKay, Linda Hoang, and William R. Bowie Abstract Full Text PDF Figures

Dosing Nomograms for Attaining Optimum Concentrations of Meropenem by Continuous Infusion in Critically Ill Patients with Severe Gram-Negative Infections: a Pharmacokinetics/Pharmacodynamics-Based Approach Federico Pea, Pierluigi Viale, Piergiorgio Cojutti, and Mario Furlanut Abstract Full Text PDF Figures

Red Man Syndrome Adverse Reaction following Intravenous Infusion of Cefepime George Panos, Dionysios C. Watson, Maria Sargianou, Dionysios Kampiotis, and Paraskevi Chra Abstract Full Text PDF Figures

Effect of Posaconazole on Cyclosporine Blood Levels and Dose Adjustment in Allogeneic Blood and Marrow Transplant Recipients Isabel Sánchez-Ortega, Lourdes Vázquez, Carmen Montes, Beatriz Patiño, Montserrat Arnan, Arancha Bermúdez, Lucrecia Yáñez, Teresa Caballero, and Rafael F. Duarte Abstract Full Text PDF

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A Case of Daptomycin-Induced Immune Thrombocytopenia Charles Grégoire, Caren Brumpt, Delphine Loirat, Nicolas Lau, Cedric Bruel, Francois Philippart, Carine Couzigou, Maité Garrouste-Orgeas, and Benoit Misset Abstract Full Text PDF Figures

Stability of Colistimethate Sodium in Aqueous Solution A. M. Healan, W. Gray, E. J. Fuchs, J. M. Griffiss, R. A. Salata, and J. Blumer Abstract Full Text PDF

Pharmacology

Comparison of the In Vivo Pharmacokinetics and In Vitro Dissolution of Raltegravir in HIV Patients Receiving the Drug by Swallowing or by Chewing Dario Cattaneo, Sara Baldelli, Matteo Cerea, Simona Landonio, Paola Meraviglia, Emanuela Simioni, Valeria Cozzi, Serena Fucile, Andrea Gazzaniga, Emilio Clementi, Massimo Galli, Giuliano Rizzardini, and Cristina Gervasoni Abstract Full Text PDF Figures

Comparative In Vitro and In Vivo Efficacies of Human Simulated Doses of Ceftazidime and Ceftazidime-Avibactam against Pseudomonas aeruginosa Jared L. Crandon, Virna J. Schuck, Mary Anne Banevicius, Marie-Eve Beaudoin, Wright W. Nichols, M. Angela Tanudra, and David P. Nicolau Abstract Full Text PDF Figures

Influence of the Protein Kinase C Activator Phorbol Myristate Acetate on the Intracellular Activity of Antibiotics against Hemin- and Menadione-Auxotrophic Small-Colony Variant Mutants of Staphylococcus aureus and Their Wild-Type Parental Strain in Human THP-1 Cells Laetitia G. Garcia, Sandrine Lemaire, Barbara C. Kahl, Karsten Becker, Richard A. Proctor, Paul M. Tulkens, and Françoise Van Bambeke Abstract Full Text PDF Figures

Therapeutic Drug Monitoring of Posaconazole in Patients with Acute Myeloid Leukemia or Myelodysplastic Syndrome M. Vaes, M. Hites, F. Cotton, A. M. Bourguignon, M. Csergö, C. Rasson, L. Ameye, D. Bron, F. Jacobs, and M. Aoun Abstract Full Text PDF Figures

Effect of PTX3 and Voriconazole Combination in a Rat Model of Invasive Pulmonary Aspergillosis Pietro Lo Giudice, Silvia Campo, Rita De Santis, and Giovanni Salvatori Abstract Full Text PDF Figures

Publisher's Correction

Novel Characteristics of Community-Acquired Methicillin-Resistant Staphylococcus aureus Strains Belonging to Multilocus Sequence Type 59 in Taiwan Tomomi Takano, Wataru Higuchi, Hassan Zaraket, Taketo Otsuka, Tatiana Baranovich, Shymaa Enany, Kohei Saito, Hirokazu Isobe, Soshi Dohmae, Kyoko Ozaki, Misao Takano, Yasuhisa Iwao, Michiko Shibuya, Takeshi Okubo, Shizuka Yabe, Da Shi, Ivan Reva, Lee-Jene Teng, and Tatsuo Yamamoto Full Text PDF

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VOLUME 57, PART 1, December 2013 Website

Research articles

Minireview

Antifungal Lock Therapy Carla J. Walraven and Samuel A. Lee Abstract Full Text PDF

Chemistry; Biosynthesis

Novel Apidaecin 1b Analogs with Superior Serum Stabilities for Treatment of Infections by Gram-Negative Pathogens Nicole Berthold, Patricia Czihal, Stefanie Fritsche, Ute Sauer, Guido Schiffer, Daniel Knappe, Gottfried Alber, and Ralf Hoffmann Abstract Full Text PDF Figures Supplemental material

Mechanisms of Action: Physiological Effects

Increased Survival of Antibiotic-Resistant Escherichia coli inside Macrophages Migla Miskinyte and Isabel Gordo Abstract Full Text PDF Figures Supplemental material

Two Hits Are Better than One: Membrane-Active and DNA Binding-Related Double-Action Mechanism of NK-18, a Novel Antimicrobial Peptide Derived from Mammalian NK-Lysin Jiexi Yan, Kairong Wang, Wen Dang, Ru Chen, Junqiu Xie, Bangzhi Zhang, Jingjing Song, and Rui Wang Abstract Full Text PDF Figures

Screen for Agents That Induce Autolysis in Bacillus subtilis Christopher J. Lacriola, Shaun P. Falk, and Bernard Weisblum Abstract Full Text PDF Figures

Caspofungin Kills Candida albicans by Causing both Cellular Apoptosis and Necrosis Binghua Hao, Shaoji Cheng, Cornelius J. Clancy, and M. Hong Nguyen Abstract Full Text PDF Figures

Antimicrobial Properties of 8-Hydroxyserrulat-14-en-19-oic Acid for Treatment of Implant-Associated Infections Justyna Nowakowska, Hans J. Griesser, Marcus Textor, Regine Landmann, and Nina Khanna Abstract Full Text PDF Figures

Cytostatic versus Cytocidal Activities of Chloroquine Analogues and Inhibition of Hemozoin Crystal Growth Alexander P. Gorka, John N. Alumasa, Katy S. Sherlach, Lauren M. Jacobs, Katherine B. Nickley, Jonathan P. Brower, Angel C. de Dios, and Paul D. Roepe Abstract Full Text PDF Figures Supplemental material

Relative to Quinine and Quinidine, Their 9-Epimers Exhibit Decreased Cytostatic Activity and Altered Heme Binding but Similar Cytocidal Activity versus Plasmodium falciparum Aquaculture Journals Page: 14 of 167

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Alexander P. Gorka, Katy S. Sherlach, Angel C. de Dios, and Paul D. Roepe Abstract Full Text PDF Figures Supplemental material

Antimicrobial Photodynamic Inactivation Inhibits Candida albicans Virulence Factors and Reduces In Vivo Pathogenicity Ilka Tiemy Kato, Renato Araujo Prates, Caetano Padial Sabino, Beth Burgwyn Fuchs, George P. Tegos, Eleftherios Mylonakis, Michael R. Hamblin, and Martha Simões Ribeiro Abstract Full Text PDF Figures

Interaction of Platelets and Anidulafungin against Aspergillus fumigatus Susanne Perkhofer, Barbara Striessnig, Bettina Sartori, Barbara Hausott, Helmut W. Ott, and Cornelia Lass-Flörl Abstract Full Text PDF Figures

Inhibition of Streptococcus pneumoniae Penicillin-Binding Protein 2x and Actinomadura R39 DD-Peptidase Activities by Ceftaroline Astrid Zervosen, André Zapun, and Jean-Marie Frère Abstract Full Text PDF Figures

Both Fidaxomicin and Vancomycin Inhibit Outgrowth of Clostridium difficile Spores Charlotte A. Allen, Farah Babakhani, Pam Sears, Ly Nguyen, and Joseph A. Sorg Abstract Full Text PDF Figures

Mechanisms of Resistance

KPC-4 Is Encoded within a Truncated Tn4401 in an IncL/M Plasmid, pNE1280, Isolated from Enterobacter cloacae and Serratia marcescens Kendall A. Bryant, Trevor C. Van Schooneveld, Ishwor Thapa, Dhundy Bastola, Laurina O. Williams, Thomas J. Safranek, Steven H. Hinrichs, Mark E. Rupp, and Paul D. Fey Abstract Full Text PDF Figures

Transferable Multiresistance Plasmids Carrying cfr in Enterococcus spp. from Swine and Farm Environment Yang Liu, Yang Wang, Stefan Schwarz, Yun Li, Zhangqi Shen, Qijing Zhang, Congming Wu, and Jianzhong Shen Abstract Full Text PDF Figures

A Mutation of the RNA Polymerase β′ Subunit (rpoC) Confers Cephalosporin Resistance in Bacillus subtilis Yong Heon Lee, Ki Hyun Nam, and John D. Helmann Abstract Full Text PDF Figures

VraT/YvqF Is Required for Methicillin Resistance and Activation of the VraSR Regulon in Staphylococcus aureus Susan Boyle-Vavra, Shouhui Yin, Dae Sun Jo, Christopher P. Montgomery, and Robert S. Daum Abstract Full Text PDF Figures Supplemental material

Novel 6′-N-Aminoglycoside Acetyltransferase AAC(6′)-Iaj from a Clinical Isolate of Pseudomonas aeruginosa Tatsuya Tada, Tohru Miyoshi-Akiyama, Kayo Shimada, Masahiro Shimojima, and Teruo Kirikae Abstract Full Text PDF Figures

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Structural Insights into the Subclass B3 Metallo-β-Lactamase SMB-1 and the Mode of Inhibition by the Common Metallo-β-Lactamase Inhibitor Mercaptoacetate Jun-ichi Wachino, Yoshihiro Yamaguchi, Shigetarou Mori, Hiromasa Kurosaki, Yoshichika Arakawa, and Keigo Shibayama Abstract Full Text PDF Figures

Characterization of the Polymyxin B Resistome of Pseudomonas aeruginosa Lucía Fernández, Carolina Álvarez-Ortega, Irith Wiegand, Jorge Olivares, Dana Kocíncová, Joseph S. Lam, José Luis Martínez, and Robert E. W. Hancock Abstract Full Text PDF Figures

Comparative Sequence Analysis of a Multidrug-Resistant Plasmid from Aeromonas hydrophila Carmelo S. del Castillo, Jun-ichi Hikima, Ho-Bin Jang, Seong-Won Nho, Tae-Sung Jung, Janenuj Wongtavatchai, Hidehiro Kondo, Ikuo Hirono, Haruko Takeyama, and Takashi Aoki Abstract Full Text PDF Figures Supplemental material

Elevated Chitin Content Reduces the Susceptibility of Candida Species to Caspofungin Louise A. Walker, Neil A. R. Gow, and Carol A. Munro Abstract Full Text PDF Figures OPEN ACCESS

Variations of Subunit ε of the Mycobacterium tuberculosis F1Fo ATP Synthase and a Novel Model for Mechanism of Action of the Tuberculosis Drug TMC207 Goran Biuković, Sandip Basak, Malathy Sony Subramanian Manimekalai, Sankaranarayanan Rishikesan, Manfred Roessle, Thomas Dick, Srinivasa P. S. Rao, Cornelia Hunke, and Gerhard Grüber Abstract Full Text PDF Figures Supplemental material

Wide Dissemination of GES-Type Carbapenemases in Acinetobacter baumannii Isolates in Kuwait Rémy A. Bonnin, Vincent O. Rotimi, Mona Al Hubail, Elise Gasiorowski, Noura Al Sweih, Patrice Nordmann, and Laurent Poirel Abstract Full Text PDF Supplemental material pSK41-Like Plasmid Is Necessary for Inc18-Like vanA Plasmid Transfer from Enterococcus faecalis to Staphylococcus aureus In Vitro Wenming Zhu, Nancye Clark, and Jean B. Patel Abstract Full Text PDF Figures

Functional Analysis of Pneumococcal Drug Efflux Pumps Associates the MATE DinF Transporter with Quinolone Susceptibility Nadia Tocci, Francesco Iannelli, Alessandro Bidossi, Maria Laura Ciusa, Francesca Decorosi, Carlo Viti, Gianni Pozzi, Susanna Ricci, and Marco Rinaldo Oggioni Abstract Full Text PDF Figures Supplemental material

Characterization of Recombinant Fluoroquinolone-Resistant Pneumococcus- Like Isolates Luz Balsalobre, Montserrat Ortega, and Adela G. de la Campa Abstract Full Text PDF Figures

Whole-Genome Analysis of a Daptomycin-Susceptible Enterococcus faecium Strain and Its Daptomycin-Resistant Variant Arising during Therapy

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Truc T. Tran, Diana Panesso, Hongyu Gao, Jung H. Roh, Jose M. Munita, Jinnethe Reyes, Lorena Diaz, Elizabeth A. Lobos, Yousif Shamoo, Nagendra N. Mishra, Arnold S. Bayer, Barbara E. Murray, George M. Weinstock, and Cesar A. Arias Abstract Full Text PDF Figures

Complete Nucleotide Sequences of blaKPC-4- and blaKPC-5-Harboring IncN and IncX Plasmids from Klebsiella pneumoniae Strains Isolated in New Jersey Liang Chen, Kalyan D. Chavda, Henry S. Fraimow, José R. Mediavilla, Roberto G. Melano,Michael R. Jacobs, Robert A. Bonomo, and Barry N. Kreiswirth Abstract Full Text PDF Figures

Biochemical Characterization of Cardiolipin Synthase Mutations Associated with Daptomycin Resistance in Enterococci Milya Davlieva, Wanna Zhang, Cesar A. Arias, and Yousif Shamoo Abstract Full Text PDF Figures Supplemental material

GES-18, a New Carbapenem-Hydrolyzing GES-Type β-Lactamase from Pseudomonas aeruginosa That Contains Ile80 and Ser170 Residues Carine Bebrone, Pierre Bogaerts, Heinrich Delbrück, Sandra Bennink, Michaël B. Kupper, Roberta Rezende de Castro, Youri Glupczynski, and Kurt M. Hoffmann Abstract Full Text PDF Figures

FIM-1, a New Acquired Metallo-β-Lactamase from a Pseudomonas aeruginosa Clinical Isolate from Italy Simona Pollini, Simona Maradei, Patrizia Pecile, Giuseppe Olivo, Francesco Luzzaro, Jean- Denis Docquier, and Gian Maria Rossolini Abstract Full Text PDF Figures

Novel Aminoglycoside 2″-Phosphotransferase Identified in a Gram-Negative Pathogen Marta Toth, Hilary Frase, Nuno T. Antunes, and Sergei B. Vakulenko Abstract Full Text PDF Figures

Emergence of Sequence Type 779 Methicillin-Resistant Staphylococcus aureus Harboring a Novel Pseudo Staphylococcal Cassette Chromosome mec (SCCmec)-SCC-SCCCRISPR Composite Element in Irish Hospitals Peter M. Kinnevey, Anna C. Shore, Grainne I. Brennan, Derek J. Sullivan, Ralf Ehricht, Stefan Monecke, Peter Slickers, and David C. Coleman Abstract Full Text PDF Figures Supplemental material

Azole Susceptibility and Transcriptome Profiling in Candida albicans Mitochondrial Electron Transport Chain Complex I Mutants Nuo Sun, William Fonzi, Hui Chen, Xiaodong She, Lulu Zhang, Lixin Zhang, and Richard Calderone Abstract Full Text PDF Figures Supplemental material

First Report of an OXA-23 Carbapenemase-Producing Acinetobacter baumannii Clinical Isolate Related to Tn2006 in Spain P. Espinal, M. D. Macià, I. Roca, E. Gato, E. Ruíz, F. Fernández-Cuenca, A. Oliver, J. Rodríguez-Baño, G. Bou, M. Tomás, and J. Vila Abstract Full Text PDF Figures

Real-Time Sequencing To Decipher the Molecular Mechanism of Resistance of a Clinical Pan-Drug-Resistant Acinetobacter baumannii Isolate from Marseille, France

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Jean-Marc Rolain, Seydina M. Diene, Marie Kempf, Gregory Gimenez, Catherine Robert, and Didier Raoult Abstract Full Text PDF Figures

Complete Sequence of pJIE186-2, a Plasmid Carrying Multiple Virulence Factors from a Sequence Type 131 Escherichia coli O25 Strain Zhiyong Zong Abstract Full Text PDF Figures

Innate Aminoglycoside Resistance of Achromobacter xylosoxidans Is Due to AxyXY-OprZ, an RND-Type Multidrug Efflux Pump Julien Bador, Lucie Amoureux, Emmanuel Blanc, and Catherine Neuwirth Abstract Full Text PDF

Stepwise Development of a Homozygous S80P Substitution in Fks1p, Conferring Echinocandin Resistance in Candida tropicalis Rasmus Hare Jensen, Helle Krogh Johansen, and Maiken Cavling Arendrup Abstract Full Text PDF Figures

Complete Nucleotide Sequence of the First KPC-2- and SHV-12-Encoding IncX Plasmid, pKpS90, from Klebsiella pneumoniae Najiby Kassis-Chikhani, Lionel Frangeul, Laurence Drieux, Christian Sengelin, Vincent Jarlier, Sylvain Brisse,Guillaume Arlet, and Dominique Decré Abstract Full Text PDF Figures

Point Mutations within the Fatty Acid Synthase Type II Dehydratase Components HadA or HadC Contribute to Isoxyl Resistance in Mycobacterium tuberculosis Laila Gannoun-Zaki, Laeticia Alibaud, and Laurent Kremer Abstract Full Text PDF Figures

Characterization of OXA-204, a Carbapenem-Hydrolyzing Class D β-Lactamase from Klebsiella pneumoniae Anaïs Potron, Patrice Nordmann, and Laurent Poirel Abstract Full Text PDF Figures

The Target of Daptomycin Is Absent from Escherichia coli and Other Gram- Negative Pathogens Christopher P. Randall, Katherine R. Mariner, Ian Chopra, and Alex J. O'Neill Abstract Full Text PDF Figures

Emergence and Spread of Plasmid-Borne tet(B)::ISCR2 in Minocycline-Resistant Acinetobacter baumannii Isolates Elisabet Vilacoba, Marisa Almuzara, Lucia Gulone, German Matías Traglia, Silvia A. Figueroa, Gabriela Sly, Analia Fernández, Daniela Centrón, and María Soledad Ramírez Abstract Full Text PDF Figures Supplemental material

Coordinate Hyperproduction of SmeZ and SmeJK Efflux Pumps Extends Drug Resistance in Stenotrophomonas maltophilia Virginia C. Gould, Aki Okazaki, and Matthew B. Avison Abstract Full Text PDF Figures

First Detection of oqxAB in Salmonella spp. Isolated from Food Marcus Ho Yin Wong and Sheng Chen Abstract Full Text PDF Figures

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Susceptibility

Efficacy of Ethanol against Candida albicans and Staphylococcus aureus Polymicrobial Biofilms Brian M. Peters, Raven M. Ward, Hallie S. Rane, Samuel A. Lee, and Mairi C. Noverr Abstract Full Text PDF Figures

Evaluation of Caspofungin Susceptibility Testing by the New Vitek 2 AST-YS06 Yeast Card Using a Unique Collection of FKS Wild-Type and Hot Spot Mutant Isolates, Including the Five Most Common Candida Species Karen M. Astvad, David S. Perlin, Helle K. Johansen, Rasmus H. Jensen, and Maiken C. Arendrup Abstract Full Text PDF Figures

Rapid Isolation and Susceptibility Testing of Leptospira spp. Using a New Solid Medium, LVW Agar Vanaporn Wuthiekanun, Premjit Amornchai, Daniel H. Paris, Sayan Langla, Janjira Thaipadunpanit, Wirongrong Chierakul, Lee D. Smythe, Nicholas J. White, Nicholas P. J. Day, Direk Limmathurotsakul, and Sharon J. Peacock Abstract Full Text PDF Figures Supplemental material OPEN ACCESS

Molecular Identification, Antifungal Susceptibility Profile, and Biofilm Formation of Clinical and Environmental Rhodotorula Species Isolates Jorge Meneses Nunes, Fernando César Bizerra, Renata Carmona e Ferreira, and Arnaldo Lopes Colombo Abstract Full Text PDF Figures

4(1H)-Quinolones with Liver Stage Activity against Plasmodium berghei Alexis N. LaCrue, Fabián E. Sáenz, R. Matthew Cross, Kenneth O. Udenze, Andrii Monastyrskyi, Steven Stein, Tina S. Mutka, Roman Manetsch, and Dennis E. Kyle Abstract Full Text PDF Figures

Analytical Procedures

Adenylate Kinase Release as a High-Throughput-Screening-Compatible Reporter of Bacterial Lysis for Identification of Antibacterial Agents Anna C. Jacobs, Louis DiDone, Jennielle Jobson, Madeline K. Sofia, Damian Krysan, and Paul M. Dunman Abstract Full Text PDF Figures Supplemental material

A Simple High-Performance Liquid Chromatography Method for Simultaneous Determination of Three Triazole Antifungals in Human Plasma Mei Zhang, Grant A. Moore, Murray L. Barclay, and Evan J. Begg Abstract Full Text PDF Figures

Antiviral Agents

A Novel Inhibitor of Dengue Virus Replication That Targets the Capsid Protein Chelsea M. Byrd, Dongcheng Dai, Douglas W. Grosenbach, Aklile Berhanu, Kevin F. Jones, Kara B. Cardwell, Christine Schneider, Kristin A. Wineinger, Jessica M. Page, Chris Harver, Eric Stavale, Shanthakumar Tyavanagimatt, Melialani A. Stone, Ralf Bartenschlager, Pietro Scaturro, Dennis E. Hruby, and Robert Jordan Abstract Full Text PDF Figures

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Inhibition of Chikungunya Virus Replication by Harringtonine, a Novel Antiviral That Suppresses Viral Protein Expression Parveen Kaur, Meerra Thiruchelvan, Regina Ching Hua Lee, Huixin Chen, Karen Caiyun Chen, Mah Lee Ng, and Justin Jang Hann Chu Abstract Full Text PDF Figures Supplemental material

Low-Level Persistence of Drug Resistance Mutations in Hepatitis B Virus- Infected Subjects with a Past History of Lamivudine Treatment Severine Margeridon-Thermet, Evguenia S. Svarovskaia, Farbod Babrzadeh, Ross Martin, Tommy F. Liu, Mary Pacold, Elizabeth C. Reuman, Susan P. Holmes, Katyna Borroto-Esoda, and Robert W. Shafer Abstract Full Text PDF Figures Supplemental material

Genotypic and Phenotypic Analyses of Hepatitis C Virus from Patients Treated with JTK-853 in a Three-Day Monotherapy Naoki Ogura, Yukiyo Toyonaga, Izuru Ando, Kunihiro Hirahara, Tsutomu Shibata, Gabriela Turcanu, Sudhakar Pai, Kan Yee, Barbara Gerhardt, Maribel Rodriguez-Torres, and Toru Noguchi Abstract Full Text PDF Figures Supplemental material

Targeting Organic Anion Transporter 3 with Probenecid as a Novel Anti- Influenza A Virus Strategy Olivia Perwitasari, Xiuzhen Yan, Scott Johnson, Caleb White, Paula Brooks, S. Mark Tompkins, and Ralph A. Tripp Abstract Full Text PDF Figures Supplemental material

Pharmacokinetic-Pharmacodynamic Modeling of Unboosted Atazanavir in a Cohort of Stable HIV-Infected Patients Sylvain Goutelle, Thomas Baudry, Marie-Claude Gagnieu, André Boibieux, Jean-Michel Livrozet, Dominique Peyramond, Christian Chidiac, Michel Tod, Tristan Ferry, and on behalf of the Lyon HIV Cohort Study Group Abstract Full Text PDF Figures

Thymidine Analogues Suppress Autophagy and Adipogenesis in Cultured Adipocytes Metodi V. Stankov, Diana Panayotova-Dimitrova, Martin Leverkus, Reinhold E. Schmidt, and Georg M. N. Behrens Abstract Full Text PDF Figures

In Vitro Activity of Daclatasvir on Hepatitis C Virus Genotype 3 NS5A Chunfu Wang, Lourdes Valera, Lingling Jia, Melissa J. Kirk, Min Gao, and Robert A. Fridell Abstract Full Text PDF Figures

Epidemiology and Surveillance

Epidemiology of Vancomycin-Resistant Enterococcus faecalis: a Case-Case- Control Study Kayoko Hayakawa, Dror Marchaim, Mohan Palla, Uma Mahesh Gudur, Harish Pulluru, Pradeep Bathina, Khaled Alshabani, Aditya Govindavarjhulla,Ashwini Mallad, Deepika Reddy Abbadi, Deepti Chowdary, Hari Kakarlapudi, Harish Guddati, Manoj Das, Naveen Kannekanti, Praveen Vemuri, Rajiv Doddamani, Venkat Ram Rakesh Mundra, Raviteja Reddy Guddeti, Rohan Policherla, Sarika Bai, Sharan Lohithaswa, Shiva Prasad Shashidharan, Sowmya Chidurala, Sreelatha Diviti, Krishna Sukayogula, Melwin Joseph, Jason M. Pogue, Paul R. Lephart, Emily T. Martin, Michael J. Rybak, and Keith S. Kaye Abstract Full Text PDF

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Surveillance and Molecular Epidemiology of Klebsiella pneumoniae Isolates That Produce Carbapenemases: First Report of OXA-48-Like Enzymes in North America Christine Lascols, Gisele Peirano, Meredith Hackel, Kevin B. Laupland, and Johann D. D. Pitout Abstract Full Text PDF

Clonal Structure, Extended-Spectrum β-Lactamases, and Acquired AmpC-Type Cephalosporinases of Escherichia coli Populations Colonizing Patients in Rehabilitation Centers in Four Countries R. Izdebski, A. Baraniak, J. Fiett, A. Adler, M. Kazma, J. Salomon, C. Lawrence, A. Rossini, A. Salvia, J. Vidal Samso, J. Fierro, M. Paul, Y. Lerman, S. Malhotra-Kumar, C. Lammens, H. Goossens, W. Hryniewicz, C. Brun-Buisson, Y. Carmeli, and M. Gniadkowski , on behalf of the MOSAR WP2 and WP5 Study Groups Abstract Full Text PDF Figures Supplemental material

Outcome of Debridement and Retention in Prosthetic Joint Infections by Methicillin-Resistant Staphylococci, with Special Reference to Rifampin and Fusidic Acid Combination Therapy T. N. Peel, K. L. Buising, M. M. Dowsey, C. A. Aboltins, J. R. Daffy, P. A. Stanley, and P. F. M. Choong Abstract Full Text PDF

Evaluation of an Expanded Microarray for Detecting Antibiotic Resistance Genes in a Broad Range of Gram-Negative Bacterial Pathogens Roderick Card, Jiancheng Zhang, Priya Das, Charlotte Cook, Neil Woodford, and Muna F. Anjum Abstract Full Text PDF Figures Supplemental material

Clonal Composition and Community Clustering of Drug-Susceptible and - Resistant Escherichia coli Isolates from Bloodstream Infections Sheila Adams-Sapper, Binh An Diep, Francoise Perdreau-Remington, and Lee W. Riley Abstract Full Text PDF Figures

Chlorhexidine and Mupirocin Susceptibilities of Methicillin-Resistant Staphylococcus aureus from Colonized Nursing Home Residents Jennifer S. McDanel, Courtney R. Murphy, Daniel J. Diekema, Victor Quan, Diane S. Kim, Ellena M. Peterson, Kaye D. Evans, Grace L. Tan, Mary K. Hayden, and Susan S. Huang Abstract Full Text PDF Figures

Mupirocin and Chlorhexidine Resistance in Staphylococcus aureus in Patients with Community-Onset Skin and Soft Tissue Infections Stephanie A. Fritz, Patrick G. Hogan, Bernard C. Camins, Ali J. Ainsworth, Carol Patrick, Madeline S. Martin, Melissa J. Krauss, Marcela Rodriguez, and Carey-Ann D. Burnham Abstract Full Text PDF Figures

Experimental Therapeutics

Preclinical Experiments on the Release Behavior of Biodegradable Nanofibrous Multipharmaceutical Membranes in a Model of Four-Wall Intrabony Defect Dave Wei-Chih Chen, Fu-Ying Lee, Jun-Yi Liao, Shih-Jung Liu, Chao-Ying Hsiao, and Jan-Kan Chen Abstract Full Text PDF Figures

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Alginate Lyase Exhibits Catalysis-Independent Biofilm Dispersion and Antibiotic Synergy John W. Lamppa andKarl E. Griswold Abstract Full Text PDF Figures

18β-Glycyrrhetinic Acid Inhibits Methicillin-Resistant Staphylococcus aureus Survival and Attenuates Virulence Gene Expression Danyelle R. Long, Julia Mead, Jay M. Hendricks, Michele E. Hardy, and Jovanka M. Voyich Abstract Full Text PDF Figures

Pharmacodynamics of Anidulafungin against Clinical Aspergillus fumigatus Isolates in a Nonneutropenic Murine Model of Disseminated Aspergillosis Seyedmojtaba Seyedmousavi, Roger J. M. Brüggemann, Willem J. G. Melchers, Paul E. Verweij, and Johan W. Mouton Abstract Full Text PDF Figures

An Improved Small-Molecule Inhibitor of FtsZ with Superior In Vitro Potency, Drug-Like Properties, and In Vivo Efficacy Neil R. Stokes, Nicola Baker, James M. Bennett, Joanne Berry, Ian Collins, Lloyd G. Czaplewski, Alastair Logan, Rebecca Macdonald, Leanne MacLeod, Hilary Peasley, Jeffrey P. Mitchell, Narendra Nayal, Anju Yadav, Anil Srivastava, and David J. Haydon Abstract Full Text PDF Figures

Inhibition of 3-Hydroxy-3-Methylglutaryl–Coenzyme A Reductase and Application of Statins as a Novel Effective Therapeutic Approach against Acanthamoeba Infections Carmen María Martín-Navarro, Jacob Lorenzo-Morales, Rubén P. Machin, Atteneri López- Arencibia, José Manuel García-Castellano, Isabel de Fuentes, Brendan Loftus, Sutherland K. Maciver, Basilio Valladares, and José E. Piñero Abstract Full Text PDF Figures

A Class of Tricyclic Compounds Blocking Malaria Parasite Oocyst Development and Transmission Richard T. Eastman, Sittiporn Pattaradilokrat, Dipak K. Raj, Saurabh Dixit, Bingbing Deng, Kazutoyo Miura, Jing Yuan, Takeshi Q. Tanaka, Ronald L. Johnson, Hongying Jiang, Ruili Huang, Kim C. Williamson, Lynn E. Lambert, Carole Long, Christopher P. Austin, Yimin Wu, and Xin-zhuan Su Abstract Full Text PDF Figures Supplemental material OPEN ACCESS

Posaconazole Pharmacodynamic Target Determination against Wild-Type and Cyp51 Mutant Isolates of Aspergillus fumigatus in an In Vivo Model of Invasive Pulmonary Aspergillosis Alexander J. Lepak, Karen Marchillo, Jaimie VanHecker, and David R. Andes Abstract Full Text PDF Figures

Chelator-Based Catheter Lock Solutions in Eradicating Organisms in Biofilm I. Raad, J. Rosenblatt, R. Reitzel, Y. Jiang, T. Dvorak, and R. Hachem Abstract Full Text PDF Figures

Fosfomycin-Daptomycin and Other Fosfomycin Combinations as Alternative Therapies in Experimental Foreign-Body Infection by Methicillin-Resistant Staphylococcus aureus C. Garrigós, O. Murillo, J. Lora-Tamayo, R. Verdaguer, F. Tubau, C. Cabellos, J. Cabo, and J. Ariza Abstract Full Text PDF Figures

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In Vitro Activity and Durability of a Combination of an Antibiofilm and an Antibiotic against Vascular Catheter Colonization Mohammad D. Mansouri, Richard A. Hull, Charles E. Stager, Richard M. Cadle, and Rabih O. Darouiche Abstract Full Text PDF Figures

Tigecycline Displays In Vivo Bactericidal Activity against Extended-Spectrum-β- Lactamase-Producing Enterobacteriaceae after 72-Hour Exposure Period Pamela R. Tessier and David P. Nicolau Abstract Full Text PDF Figures

The Therapeutic Effect of Tigecycline, Unlike That of Ceftazidime, Is Not Influenced by whether the Klebsiella pneumoniae Strain Produces Extended- Spectrum β-Lactamases in Experimental Pneumonia in Rats Wil H. F. Goessens, Johan W. Mouton, Marian T. ten Kate, Fritz Sörgel, Martina Kinzig, and Irma A. J. M. Bakker-Woudenberg Abstract Full Text PDF Figures

Clinical Therapeutics

Benznidazole-Related Adverse Drug Reactions and Their Relationship to Serum Drug Concentrations in Patients with Chronic Chagas Disease María-Jesús Pinazo, Laura Guerrero, Elizabeth Posada, Elena Rodríguez, Dolors Soy, and Joaquim Gascon Abstract Full Text PDF Figures

Daptomycin Concentrations in Valve Tissue and Vegetation in Patients with Bacterial Endocarditis Carlo Tascini, Antonello Di Paolo, Roberta Poletti, Sarah Flammini, Michele Emdin, Ilaria Ciullo, Enrico Tagliaferri, Annette Moter, and Francesco Menichetti Abstract Full Text PDF

Prospective Study of the Wilson Severity-of-Illness Scoring System for Complicated Skin and Skin Structure Infections George H. Talbot, Tanya O'Neal, Anita F. Das, and Dirk Thye Abstract Full Text PDF

Pharmacology

Ceftaroline Increases Membrane Binding and Enhances the Activity of Daptomycin against Daptomycin-Nonsusceptible Vancomycin-Intermediate Staphylococcus aureus in a Pharmacokinetic/Pharmacodynamic Model Brian J. Werth, George Sakoulas, Warren E. Rose, Joseph Pogliano, Ryan Tewhey, and Michael J. Rybak Abstract Full Text PDF Figures

High β-Lactamase Levels Change the Pharmacodynamics of β-Lactam Antibiotics in Pseudomonas aeruginosa Biofilms Wang Hengzhuang, Oana Ciofu, Liang Yang, Hong Wu, Zhijun Song, Antonio Oliver, and Niels Høiby Abstract Full Text PDF Figures Supplemental material

Pharmacodynamics of a Simulated Single 1,200-Milligram Dose of Oritavancin in an In Vitro Pharmacokinetic/Pharmacodynamic Model of Methicillin-Resistant Staphylococcus aureus Infection

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Adam Belley, Francis F. Arhin, Ingrid Sarmiento, Hong Deng, Warren Rose, and Greg Moeck Abstract Full Text PDF Figures

Highly Variable Plasma Concentrations of Voriconazole in Pediatric Hematopoietic Stem Cell Transplantation Patients Imke H. Bartelink, Tom Wolfs, Martine Jonker, Marjolein de Waal, Toine C. G. Egberts, Tessa T. Ververs, Jaap J. Boelens, and Marc Bierings Abstract Full Text PDF Figures

Effects of Etravirine on the Pharmacokinetics of the Integrase Inhibitor S/GSK1265744 Susan L. Ford, Elizabeth Gould, Shuguang Chen, Yu Lou, Etienne Dumont, William Spreen, and Stephen Piscitelli Abstract Full Text PDF Figures OPEN ACCESS

Pharmacokinetics and Pharmacodynamics of Anidulafungin for Experimental Candida Endophthalmitis: Insights into the Utility of Echinocandins for Treatment of a Potentially Sight-Threatening Infection J. L. Livermore, T. W. Felton, J. Abbott, A. Sharp, J. Goodwin, L. Gregson, P. A. Warn, S. J. Howard, and W. W. Hope Abstract Full Text PDF Figures

Population Pharmacokinetic-Pharmacodynamic Analysis of Anidulafungin in Adult Patients with Fungal Infections Ping Liu Abstract Full Text PDF Figures

Population Pharmacokinetics of Fusidic Acid: Rationale for Front-Loaded Dosing Regimens Due to Autoinhibition of Clearance Jürgen B. Bulitta, Olanrewaju O. Okusanya, Alan Forrest, Sujata M. Bhavnani, Kay Clark, J. Gordon Still, Prabhavathi Fernandes, and Paul G. Ambrose Abstract Full Text PDF Figures Supplemental material

Mechanism-Based Model of Parasite Growth and Dihydroartemisinin Pharmacodynamics in Murine Malaria Kashyap Patel, Kevin T. Batty, Brioni R. Moore, Peter L. Gibbons, Jürgen B. Bulitta, and Carl M. Kirkpatrick Abstract Full Text PDF Figures Supplemental material

Efficacy of Liposomal Bismuth-Ethanedithiol-Loaded Tobramycin after Intratracheal Administration in Rats with Pulmonary Pseudomonas aeruginosa Infection Moayad Alhariri and Abdelwahab Omri Abstract Full Text PDF Figures

Colistin Methanesulfonate and Colistin Pharmacokinetics in Critically Ill Patients Receiving Continuous Venovenous Hemodiafiltration Matti Karvanen, Diamantis Plachouras, Lena E. Friberg, Elisabeth Paramythiotou, Evangelos Papadomichelakis, Ilias Karaiskos, Iraklis Tsangaris, Apostolos Armaganidis, Otto Cars, and Helen Giamarellou Abstract Full Text PDF Figures

Letters to the Editor

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Complete Deletion of the ramR Gene in an In Vitro-Selected Mutant of Klebsiella pneumoniae Overexpressing the AcrAB Efflux Pump Suzanne Bialek-Davenet, Véronique Leflon-Guibout, Olivier Tran Minh, Estelle Marcon, Richard Moreau, and Marie-Hélène Nicolas-Chanoine Full Text PDF Figures

Comparative Genomics of IncL/M-Type Plasmids: Evolution by Acquisition of Resistance Genes and Insertion Sequences Rémy A. Bonnin, Patrice Nordmann, Alessandra Carattoli, and Laurent Poirel Full Text PDF Figures Supplemental material

Loss of the OprD Homologue Protein in Acinetobacter baumannii: Impact on Carbapenem Susceptibility Younes Smani andJerónimo Pachón Full Text PDF

Erratum

Noninvasive Determination of 2-[18F]-Fluoroisonicotinic Acid Hydrazide Pharmacokinetics by Positron Emission Tomography in Mycobacterium tuberculosis-Infected Mice E. A. Weinstein, L. Liu, A. A. Ordonez, H. Wang, J. M. Hooker, P. J. Tonge, and S. K. Jain Full Text PDF

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VOLUME 78, PART 24, DECEMBER 2012 Website

Research articles

Biotechnology

Ethylene Glycol Metabolism by Pseudomonas putida Björn Mückschel, Oliver Simon, Janosch Klebensberger, Nadja Graf, Bettina Rosche, Josef Altenbuchner, Jens Pfannstiel, Armin Huber, and Bernhard Hauer Abstract Full Text PDF Figures Supplemental material

Lactate and Acrylate Metabolism by Megasphaera elsdenii under Batch and Steady-State Conditions Rupal Prabhu, Elliot Altman, and Mark A. Eiteman Abstract Full Text PDF Figures

Expression of Shewanella oneidensis MR-1 [FeFe]-Hydrogenase Genes in Anabaena sp. Strain PCC 7120 Katrin Gärtner, Sigal Lechno-Yossef, Adam J. Cornish, C. Peter Wolk, and Eric L. Hegg Abstract Full Text PDF Figures

Engineering Filamentous Fungi for Conversion of D-Galacturonic Acid to L- Galactonic Acid Joosu Kuivanen, Dominik Mojzita, Yanming Wang, Satu Hilditch, Merja Penttilä, Peter Richard, and Marilyn G. Wiebe Abstract Full Text PDF Figures

Manipulation of the Anoxic Metabolism in Escherichia coli by ArcB Deletion Variants in the ArcBA Two-Component System Gonzalo N. Bidart, Jimena A. Ruiz, Alejandra de Almeida, Beatriz S. Méndez, and Pablo I. Nikel Abstract Full Text PDF Figures

Environmental Microbiology

Rare Branched Fatty Acids Characterize the Lipid Composition of the Intra- Aerobic Methane Oxidizer “Candidatus Methylomirabilis oxyfera” Dorien M. Kool, Baoli Zhu, W. Irene C. Rijpstra, Mike S. M. Jetten, Katharina F. Ettwig, and Jaap S. Sinninghe Damsté Abstract Full Text PDF Figures

Anaerobic Oxidization of Methane in a Minerotrophic Peatland: Enrichment of Nitrite-Dependent Methane-Oxidizing Bacteria Baoli Zhu, Gijs van Dijk, Christian Fritz, Alfons J. P. Smolders, Arjan Pol, Mike S. M. Jetten, and Katharina F. Ettwig Abstract Full Text PDF Figures

Evaluation of a Genome-Scale In Silico Metabolic Model for Geobacter metallireducens by Using Proteomic Data from a Field Biostimulation Experiment Yilin Fang, Michael J. Wilkins, Steven B. Yabusaki, Mary S. Lipton, and Philip E. Long Abstract Full Text PDF Figures Supplemental material

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Prevalence, Environmental Loading, and Molecular Characterization of Cryptosporidium and Giardia Isolates from Domestic and Wild Animals along the Central California Coast Stori C. Oates, Melissa A. Miller, Dane Hardin, Patricia A. Conrad, Ann Melli, David A. Jessup, Clare Dominik, Annette Roug, M. Tim Tinker, and Woutrina A. Miller Abstract Full Text PDF Figures

Probing the Role of Sigma π Interaction and Energetics in the Catalytic Efficiency of Endo-1,4-β-Xylanase Raushan Kumar Singh, Manish Kumar Tiwari, In-Won Kim, Zhilei Chen, and Jung-Kul Lee Abstract Full Text PDF Figures Supplemental material

Population Genetic Structure of 4,12:a:− Salmonella enterica Strains from Harbor Porpoises Jana K. Haase, Derek J. Brown, François-Xavier Weill, Henry Mather, Geoffrey Foster, Sylvain Brisse, John Wain, and Mark Achtman Abstract Full Text PDF Figures Supplemental material

Evidence against Barium in the Mushroom Trogia venenata as a Cause of Sudden Unexpected Deaths in Yunnan, China Ying Zhang, Yanchun Li, Gang Wu, Bang Feng, Shanze Yoell, Zefen Yu, Keqin Zhang, and Jianping Xu Abstract Full Text PDF

Protective Role of Spore Structural Components in Determining Bacillus subtilis Spore Resistance to Simulated Mars Surface Conditions Ralf Moeller, Andrew C. Schuerger, Günther Reitz, and Wayne L. Nicholson Abstract Full Text PDF Figures

Enzymology and Protein Engineering

Characterization of a Broad-Specificity β-Glucanase Acting on β-(1,3)-, β-(1,4)-, and β-(1,6)-Glucans That Defines a New Glycoside Hydrolase Family Mickael Lafond, David Navarro, Mireille Haon, Marie Couturier, and Jean-Guy Berrin Abstract Full Text PDF Figures

A Novel meso-Diaminopimelate Dehydrogenase from Symbiobacterium thermophilum: Overexpression, Characterization, and Potential for D-Amino Acid Synthesis Xiuzhen Gao, Xi Chen, Weidong Liu, Jinhui Feng, Qiaqing Wu, Ling Hua, and Dunming Zhu Abstract Full Text PDF Figures Supplemental material

Purification and Characterization of an NAD+-Dependent XylB-Like Aryl Alcohol Dehydrogenase Identified in Acinetobacter baylyi ADP1 Stefan Uthoff and Alexander Steinbüchel Abstract Full Text PDF Figures

Homologous Alkalophilic and Acidophilic L-Arabinose Isomerases Reveal Region-Specific Contributions to the pH Dependence of Activity and Stability Sang-Jae Lee, Sang Jun Lee, Yong-Jik Lee, Seong-Bo Kim, Sung-Kun Kim, and Dong-Woo Lee Abstract Full Text PDF Figures Supplemental material

Evolutionary and Genomic Microbiology

A Single-Cell Genome for Thiovulum sp.

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Ian P. G. Marshall, Paul C. Blainey, Alfred M. Spormann, and Stephen R. Quake Abstract Full Text PDF Figures Supplemental material

Effect of the Bacillus atrophaeus subsp. globigii Spo0F H101R Mutation on Strain Fitness Doncho V. Zhelev, Mia Hunt, Anna Le, Christopher Dupuis, Suelynn Ren, and Henry S. Gibbons Abstract Full Text PDF Figures Supplemental material

Staphylococcus aureus CC398 Clade Associated with Human-to-Human Transmission Alex J. McCarthy, Willem van Wamel, Stien Vandendriessche, Jesper Larsen, Olivier Denis, Cristina Garcia-Graells, Ann-Catrin Uhlemann, Franklin D. Lowy, Robert Skov, and Jodi A. Lindsay Abstract Full Text PDF Figures

Food Microbiology

Modeling the Growth of Listeria monocytogenes in Soft Blue-White Cheese Per Sand Rosshaug, Ann Detmer, Hanne Ingmer, and Marianne Halberg Larsen Abstract Full Text PDF Figures

Incidence of Staphylococcus aureus and Analysis of Associated Bacterial Communities on Food Industry Surfaces Diana Gutiérrez, Susana Delgado, Daniel Vázquez-Sánchez, Beatriz Martínez, Marta López Cabo, Ana Rodríguez, Juan J. Herrera, and Pilar García Abstract Full Text PDF Figures

Silage Collected from Dairy Farms Harbors an Abundance of Listeriaphages with Considerable Host Range and Genome Size Diversity Kitiya Vongkamjan, Andrea Moreno Switt, Henk C. den Bakker, Esther D. Fortes, and Martin Wiedmann Abstract Full Text PDF Figures Supplemental material

Characterization of Two Virulent Phages of Lactobacillus plantarum Mariángeles Briggiler Marcó, Josiane E. Garneau, Denise Tremblay, Andrea Quiberoni, and Sylvain Moineau Abstract Full Text PDF Figures

Genetics and Molecular Biology

Different Antibiotic Resistance and Sporulation Properties within Multiclonal Clostridium difficile PCR Ribotypes 078, 126, and 033 in a Single Calf Farm Valerija Zidaric, Bart Pardon, Tiago dos Vultos, Piet Deprez, Michael Sebastiaan Maria Brouwer, Adam P. Roberts, Adriano O. Henriques, and Maja Rupnik Abstract Full Text PDF Figures

Functional Analysis of the Lactobacillus casei BL23 Sortases Diego Muñoz-Provencio, Jesús Rodríguez-Díaz, María Carmen Collado, Philippe Langella, Luis G. Bermúdez-Humarán, and Vicente Monedero Abstract Full Text PDF Figures

Genetic Diversity among Clostridium botulinum Strains Harboring bont/A2 and bont/A3 Genes

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Carolina Lúquez, Brian H. Raphael, Lavin A. Joseph, Sarah R. Meno, Rafael A. Fernández, and Susan E. Maslanka Abstract Full Text PDF Figures

3′ Untranslated Region-Dependent Degradation of the aceA mRNA, Encoding the Glyoxylate Cycle Enzyme Isocitrate Lyase, by RNase E/G in Corynebacterium glutamicum Tomoya Maeda and Masaaki Wachi Abstract Full Text PDF Figures

Invertebrate Microbiology

Some Like It Hot: Evolution and Ecology of Novel Endosymbionts in Bat Flies of Cave-Roosting Bats (Hippoboscoidea, Nycterophiliinae) Solon F. Morse, Carl W. Dick, Bruce D. Patterson, and Katharina Dittmar Abstract Full Text PDF Figures Supplemental material

Influence of Temperature on the Physiology and Virulence of the Insect Pathogen Serratia sp. Strain SCBI Lauren M. Petersen and Louis S. Tisa Abstract Full Text PDF Figures Supplemental material

Methods

Microscope-Based Imaging Platform for Large-Scale Analysis of Oral Biofilms L. Karygianni, M. Follo, E. Hellwig, D. Burghardt, M. Wolkewitz, A. Anderson, and A. Al- Ahmad Abstract Full Text PDF Figures

Microbial Ecology

Bacteriophage Ecology in a Commercial Cucumber Fermentation Z. Lu, I. M. Pérez-Díaz, J. S. Hayes, and F. Breidt Abstract Full Text PDF Figures

Response of the Soil Microbial Community to Changes in Precipitation in a Semiarid Ecosystem Melissa A. Cregger, Christopher W. Schadt, Nate G. McDowell, William T. Pockman, and Aimée T. Classen Abstract Full Text PDF Figures Supplemental material

Evaluation of Two Approaches for Assessing the Genetic Similarity of Virioplankton Populations as Defined by Genome Size Sanchita Jamindar, Shawn W. Polson, Sharath Srinivasiah, Lisa Waidner, and K. Eric Wommack Abstract Full Text PDF Figures Supplemental material

Microbial Community Response during the Iron Fertilization Experiment LOHAFEX Stefan Thiele, Bernhard M. Fuchs, Nagappa Ramaiah, and Rudolf Amann Abstract Full Text PDF Figures Supplemental material

Novel Bacterial Community Associated with 500-Year-Old Unpreserved Archaeological Wood from King Henry VIII's Tudor Warship the Mary Rose Joanne Preston, Joy E. M. Watts, and Mark Jones

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Abstract Full Text PDF Figures Supplemental material

Cellulolytic Bacteria in the Foregut of the Dromedary Camel (Camelus dromedarius) Anjas A. Samsudin, André-Denis G. Wright, and Rafat Al Jassim Abstract Full Text PDF Figures

Mycology

Prevalence and Diversity of Viruses in the Entomopathogenic Fungus Beauveria bassiana Noemí Herrero, Encarna Dueñas, Enrique Quesada-Moraga, and Iñigo Zabalgogeazcoa Abstract Full Text PDF Figures Supplemental material

Biosynthesis and Functions of a Melanoid Pigment Produced by Species of the Sporothrix Complex in the Presence of L-Tyrosine Rodrigo Almeida-Paes, Susana Frases, Glauber de Sousa Araújo, Manoel Marques Evangelista de Oliveira, Gary J. Gerfen, Joshua D. Nosanchuk, and Rosely Maria Zancopé-Oliveira Abstract Full Text PDF Figures

Glucosylation and Other Biotransformations of T-2 Toxin by Yeasts of the Trichomonascus Clade Susan P. McCormick, Neil P. J. Price, and Cletus P. Kurtzman Abstract Full Text PDF Figures

Physiology

Fatty Acid Cosubstrates Provide β-Oxidation Precursors for Rhamnolipid Biosynthesis in Pseudomonas aeruginosa, as Evidenced by Isotope Tracing and Gene Expression Assays Lin Zhang, Tracey A. Veres-Schalnat, Arpad Somogyi, Jeanne E. Pemberton, and Raina M. Maier Abstract Full Text PDF Figures Supplemental material

Public Health Microbiology

Genetic Diversity of Clinical and Environmental Vibrio parahaemolyticus Strains from the Pacific Northwest Rohinee Paranjpye, Owen S. Hamel, Asta Stojanovski, and Martin Liermann Abstract Full Text PDF Figures Supplemental material

Identification and Characterization of a Bile Salt Hydrolase from Lactobacillus salivarius for Development of Novel Alternatives to Antibiotic Growth Promoters Zhong Wang, Ximin Zeng, Yiming Mo, Katie Smith, Yuming Guo, and Jun Lin Abstract Full Text PDF Figures Supplemental material

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VOLUME 79, PART 1, JANUARY 2013 Website

Research articles

Minireview Aquaculture Journals Page: 30 of 167

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Gut and Root Microbiota Commonalities Shamayim T. Ramírez-Puebla, Luis E. Servín-Garcidueñas, Berenice Jiménez-Marín, Luis M. Bolaños, Mónica Rosenblueth, Julio Martínez, Marco Antonio Rogel, Ernesto Ormeño- Orrillo, and Esperanza Martínez-Romero Abstract Full Text PDF OPEN ACCESS

Biodegradation

Comparing Metabolic Functionalities, Community Structures, and Dynamics of Herbicide-Degrading Communities Cultivated with Different Substrate Concentrations Erkin Gözdereliler, Nico Boon, Jens Aamand, Karen De Roy, Michael S. Granitsiotis, Hans- Jørgen Albrechtsen, and Sebastian R. Sørensen Abstract Full Text PDF Figures Supplemental material n-Alkane Chain Length Alters Dietzia sp. Strain DQ12-45-1b Biosurfactant Production and Cell Surface Activity Xing-Biao Wang, Yong Nie, Yue-Qin Tang, Gang Wu, and Xiao-Lei Wu Abstract Full Text PDF Figures Supplemental material

Biotechnology

Investigation of the Amycolatopsis sp. Strain ATCC 39116 Vanillin Dehydrogenase and Its Impact on the Biotechnical Production of Vanillin Christian Fleige, Gunda Hansen, Jens Kroll, and Alexander Steinbüchel Abstract Full Text PDF Figures Supplemental material

Ethanol Production and Maximum Cell Growth Are Highly Correlated with Membrane Lipid Composition during Fermentation as Determined by Lipidomic Analysis of 22 Saccharomyces cerevisiae Strains Clark M. Henderson, Michelle Lozada-Contreras, Vladimir Jiranek, Marjorie L. Longo, and David E. Block Abstract Full Text PDF Figures Supplemental material

Use of Proteomic Analysis To Elucidate the Role of Calcium in Acetone- Butanol-Ethanol Fermentation by Clostridium beijerinckii NCIMB 8052 Bei Han, Victor Ujor, Lien B. Lai, Venkat Gopalan, and Thaddeus Chukwuemeka Ezeji Abstract Full Text PDF Figures Supplemental material

Engineering Signal Peptides for Enhanced Protein Secretion from Lactococcus lactis Daphne T. W. Ng and Casim A. Sarkar Abstract Full Text PDF Figures Supplemental material

Increasing the Heme-Dependent Respiratory Efficiency of Lactococcus lactis by Inhibition of Lactate Dehydrogenase Stefania Arioli, Daniele Zambelli, Simone Guglielmetti, Ivano De Noni, Martin B. Pedersen, Per Dedenroth Pedersen, Fabio Dal Bello, and Diego Mora Abstract Full Text PDF Figures

Environmental Microbiology

Community and Proteomic Analysis of Methanogenic Consortia Degrading Terephthalate

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Jer-Horng Wu, Feng-Yau Wu, Hui-Ping Chuang, Wei-Yu Chen, Hung-Jen Huang, Shu-Hui Chen, and Wen-Tso Liu Abstract Full Text PDF Figures Supplemental material

Gray Mold Populations in German Strawberry Fields Are Resistant to Multiple Fungicides and Dominated by a Novel Clade Closely Related to Botrytis cinerea Michaela Leroch, Cecilia Plesken, Roland W. S. Weber, Frank Kauff, Gabriel Scalliet, and Matthias Hahn Abstract Full Text PDF Figures Supplemental material

Development of Quantitative PCR Assays Targeting the 16S rRNA Genes of Enterococcus spp. and Their Application to the Identification of Enterococcus Species in Environmental Samples Hodon Ryu, Michael Henson, Michael Elk, Carlos Toledo-Hernandez, John Griffith, Denene Blackwood, Rachel Noble, Michèle Gourmelon, Susan Glassmeyer, and Jorge W. Santo Domingo Abstract Full Text PDF Figures

Development and Evaluation of EPA Method 1615 for Detection of Enterovirus and Norovirus in Water Jennifer L. Cashdollar, Nichole E. Brinkman, Shannon M. Griffin,Brian R. McMinn, Eric R. Rhodes, Eunice A. Varughese, Ann C. Grimm, Sandhya U. Parshionikar, Larry Wymer, and G. Shay Fout Abstract Full Text PDF Figures

Bacterial Chitinolytic Communities Respond to Chitin and pH Alteration in Soil Anna M. Kielak, Mariana Silvia Cretoiu, Alexander V. Semenov, Søren J. Sørensen, and Jan Dirk van Elsas Abstract Full Text PDF Figures Supplemental material

Identification of the Enzyme Responsible for N-Acetylation of Norfloxacin by Microbacterium sp. Strain 4N2-2 Dae-Wi Kim, Jinhui Feng, Huizhong Chen, Ohgew Kweon, Yuan Gao, Li-Rong Yu, Vanessa J. Burrowes, and John B. Sutherland Abstract Full Text PDF Figures

Seasonal Methane Oxidation Potential in Manure Crusts Daniel A. Nielsen, Andreas Schramm, Lars P. Nielsen, and Niels P. Revsbech Abstract Full Text PDF Figures Supplemental material

Enzymology and Protein Engineering

Expression and Characterization of a Bifidobacterium adolescentis Beta- Mannanase Carrying Mannan-Binding and Cell Association Motifs Evelina Kulcinskaja, Anna Rosengren, Romany Ibrahim, Katarína Kolenová, and Henrik Stålbrand Abstract Full Text PDF Figures

Biochemical Properties and Crystal Structure of a β-Phenylalanine Aminotransferase from Variovorax paradoxus Ciprian G. Crismaru, Gjalt G. Wybenga, Wiktor Szymanski, Hein J. Wijma, Bian Wu, Sebastian Bartsch, Stefaan de Wildeman, Gerrit J. Poelarends, Ben L. Feringa, Bauke W. Dijkstra, and Dick B. Janssen Abstract Full Text PDF Figures Supplemental material

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Identification of a Residue Affecting Fatty Alcohol Selectivity in Wax Ester Synthase Brett M. Barney, Rachel L. Mann, and Janet M. Ohlert Abstract Full Text PDF Figures

Evolutionary and Genomic Microbiology

Genomic and Physiological Characterization of the Chromate-Reducing, Aquifer-Derived Firmicute Pelosinus sp. Strain HCF1 Harry R. Beller, Ruyang Han, Ulas Karaoz, HsiaoChien Lim, and Eoin L. Brodie Abstract Full Text PDF Figures Supplemental material

Exploration of the Genomic Diversity and Core Genome of the Bifidobacterium adolescentis Phylogenetic Group by Means of a Polyphasic Approach Sabrina Duranti, Francesca Turroni, Christian Milani, Elena Foroni, Francesca Bottacini, Fabio Dal Bello, Alberto Ferrarini, Massimo Delledonne, Douwe van Sinderen, and Marco Ventura Abstract Full Text PDF Figures Supplemental material

Food Microbiology

Effect of Frequency and Waveform on Inactivation of Escherichia coli O157:H7 and Salmonella enterica Serovar Typhimurium in Salsa by Ohmic Heating Su-Yeon Lee, Sangryeol Ryu, and Dong-Hyun Kang Abstract Full Text PDF Figures

The Noncommensal Bacterium Methylococcus capsulatus (Bath) Ameliorates Dextran Sulfate (Sodium Salt)-Induced Ulcerative Colitis by Influencing Mechanisms Essential for Maintenance of the Colonic Barrier Function Charlotte R. Kleiveland, Lene T. Olsen Hult, Signe Spetalen, Magne Kaldhusdal, Trine Eker Christofferesen, Oskar Bengtsson, Odd Helge Romarheim, Morten Jacobsen, and Tor Lea Abstract Full Text PDF Figures

Catalase Activity as a Biomarker for Mild-Stress-Induced Robustness in Bacillus weihenstephanensis Heidy M. W. den Besten, Styliani Effraimidou, and Tjakko Abee Abstract Full Text PDF Figures

Behavior of Different Shiga Toxin-Producing Escherichia coli Serotypes in Various Experimentally Contaminated Raw-Milk Cheeses Stéphane D. Miszczycha, Frédérique Perrin, Sarah Ganet, Emmanuel Jamet, Fanny Tenenhaus-Aziza, Marie-Christine Montel, and Delphine Thevenot-Sergentet Abstract Full Text PDF Figures

The Salmonella Transcriptome in Lettuce and Cilantro Soft Rot Reveals a Niche Overlap with the Animal Host Intestine Danielle M. Goudeau, Craig T. Parker, Yaguang Zhou, Shlomo Sela, Yulia Kroupitski, and Maria T. Brandl Abstract Full Text PDF Figures Supplemental material

Genetics and Molecular Biology

Carboxyethylarginine Synthase Genes Show Complex Cross-Regulation in Streptomyces clavuligerus Thomas Kwong, Kapil Tahlan, Cecilia L. Anders, and Susan E. Jensen Abstract Full Text PDF Figures Supplemental material

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Autotransporter Protein-Encoding Genes of Diarrheagenic Escherichia coli Are Found in both Typical and Atypical Enteropathogenic E. coli Strains Afonso G. Abreu, Vanessa Bueris, Tatiane M. Porangaba, Marcelo P. Sircili, Fernando Navarro-Garcia, and Waldir P. Elias Abstract Full Text PDF

Geomicrobiology

Elimination of Manganese(II,III) Oxidation in Pseudomonas putida GB-1 by a Double Knockout of Two Putative Multicopper Oxidase Genes Kati Geszvain, James K. McCarthy, and Bradley M. Tebo Abstract Full Text PDF Figures Supplemental material

Invertebrate Microbiology

NeuroBactrus, a Novel, Highly Effective, and Environmentally Friendly Recombinant Baculovirus Insecticide Hee Jin Shim, Jae Young Choi, Yong Wang, Xue Ying Tao, Qin Liu, Jong Yul Roh, Jae Su Kim, Woo Jin Kim, Soo Dong Woo, Byung Rae Jin, and Yeon Ho Je Abstract Full Text PDF Figures Supplemental material

Phylogenetic, Metabolic, and Taxonomic Diversities Shape Mediterranean Fruit Fly Microbiotas during Ontogeny Yael Aharon, Zohar Pasternak, Michael Ben Yosef, Adi Behar, Carol Lauzon, Boaz Yuval, and Edouard Jurkevitch Abstract Full Text PDF Figures Supplemental material

Specific Detection and Localization of Microsporidian Parasites in Invertebrate Hosts by Using In Situ Hybridization Aurore Dubuffet, Judith E. Smith, Leellen Solter, M. Alejandra Perotti, Henk R. Braig, and Alison M. Dunn Abstract Full Text PDF Figures Supplemental material

Methods

Promoter Swapping Unveils the Role of the Citrobacter rodentium CTS1 Type VI Secretion System in Interbacterial Competition Erwan Gueguen and Eric Cascales Abstract Full Text PDF Figures Supplemental material

Fluorometric Quantification of Polyphosphate in Environmental Plankton Samples: Extraction Protocols, Matrix Effects, and Nucleic Acid Interference Patrick Martin and Benjamin A. S. Van Mooy Abstract Full Text PDF Figures Supplemental material

Microbial Ecology

Lineage-Specific Responses of Microbial Communities to Environmental Change Nicholas D. Youngblut, Ashley Shade, Jordan S. Read, Katherine D. McMahon, and Rachel J. Whitaker Abstract Full Text PDF Figures Supplemental material

Environment-Dependent Distribution of the Sediment nifH-Harboring Microbiota in the Northern South China Sea

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Hongyue Dang, Jinying Yang, Jing Li, Xiwu Luan, Yunbo Zhang, Guizhou Gu, Rongrong Xue, Mingyue Zong, and Martin G. Klotz Abstract Full Text PDF Figures Supplemental material

Co-Occurring Anammox, Denitrification, and Codenitrification in Agricultural Soils Andrew Long, Joshua Heitman, Craig Tobias, Rebecca Philips, and Bongkeun Song Abstract Full Text PDF Figures Supplemental material

Relationship between Abundance and Specific Activity of Bacterioplankton in Open Ocean Surface Waters Dana E. Hunt, Yajuan Lin, Matthew J. Church, David M. Karl, Susannah G. Tringe, Lisa K. Izzo, and Zackary I. Johnson Abstract Full Text PDF Figures Supplemental material

Polycyclovorans algicola gen. nov., sp. nov., an Aromatic-Hydrocarbon- Degrading Marine Bacterium Found Associated with Laboratory Cultures of Marine Phytoplankton Tony Gutierrez, David H. Green, Peter D. Nichols, William B. Whitman, Kirk T. Semple, and Michael D. Aitken Abstract Full Text PDF Figures

Structure and Ecological Roles of a Novel Exopolysaccharide from the Arctic Sea Ice Bacterium Pseudoalteromonas sp. Strain SM20310 Sheng-Bo Liu, Xiu-Lan Chen, Hai-Lun He, Xi-Ying Zhang, Bin-Bin Xie, Yong Yu, Bo Chen, Bai-Cheng Zhou, and Yu-Zhong Zhang Abstract Full Text PDF Figures Supplemental material

Form and Function of Clostridium thermocellum Biofilms Alexandru Dumitrache, Gideon Wolfaardt, Grant Allen, Steven N. Liss, and Lee R. Lynd Abstract Full Text PDF Figures Supplemental material

Depth-Related Differences in Organic Substrate Utilization by Major Microbial Groups in Intertidal Marine Sediment Tetsuro Miyatake, Barbara J. MacGregor, and Henricus T. S. Boschker Abstract Full Text PDF Figures Supplemental material

Mycology

Isotope-Assisted Screening for Iron-Containing Metabolites Reveals a High Degree of Diversity among Known and Unknown Siderophores Produced by Trichoderma spp. Sylvia M. Lehner, Lea Atanasova, Nora K. N. Neumann, Rudolf Krska, Marc Lemmens, Irina S. Druzhinina, and Rainer Schuhmacher Abstract Full Text PDF Figures Supplemental material

Physiology

Functional γ-Aminobutyrate Shunt in Listeria monocytogenes: Role in Acid Tolerance and Succinate Biosynthesis Conor Feehily, Conor P. O'Byrne, and Kimon Andreas G. Karatzas Abstract Full Text PDF Figures

Tetrathionate-Forming Thiosulfate Dehydrogenase from the Acidophilic, Chemolithoautotrophic Bacterium Acidithiobacillus ferrooxidans

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Mei Kikumoto, Shohei Nogami, Tadayoshi Kanao, Jun Takada, and Kazuo Kamimura Abstract Full Text PDF Figures Supplemental material

Invertase SUC2 Is the Key Hydrolase for Inulin Degradation in Saccharomyces cerevisiae Shi-An Wang and Fu-Li Li Abstract Full Text PDF Figures Supplemental material

Public Health Microbiology

Quantitative Microbial Risk Assessment of Pathogenic Vibrios in Marine Recreational Waters of Southern California Gregory Dickinson, Keah-ying Lim, and Sunny C. Jiang Abstract Full Text PDF Figures Supplemental material

Bartonella Infections in Deer Keds (Lipoptena cervi) and Moose (Alces alces) in Norway Samuel Duodu, Knut Madslien, Eva Hjelm, Ylva Molin, Anna Paziewska-Harris, Philip D. Harris, Duncan J. Colquhoun, and Bjørnar Ytrehus Abstract Full Text PDF Figures Supplemental material

Occurrence of Virulence Genes Associated with Diarrheagenic Pathotypes in Escherichia coli Isolates from Surface Water Jatinder P. S. Sidhu, Warish Ahmed, Leonie Hodgers, and Simon Toze Abstract Full Text PDF Figures

Improved Recovery of Bacillus Spores from Nonporous Surfaces with Cotton Swabs over Foam, Nylon, or Polyester, and the Role of Hydrophilicity of Cotton in Governing the Recovery Efficiency Pious Thomas, Mohammed M. Mujawar, Reshmi Upreti, and Aparna C. Sekhar Abstract Full Text PDF Figures Supplemental material

Colonization of Campylobacter spp. in Broiler Chickens and Laying Hens Reared in Tropical Climates with Low-Biosecurity Housing R. S. Kalupahana, K. S. A. Kottawatta, K. S. T. Kanankege, M. A. P. van Bergen, P. Abeynayake, and J. A. Wagenaar Abstract Full Text PDF Figures

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VOLUME 79, PART 2, JANUARY 2013 Website

Research articles

Minireview

Taking the Starch out of Oral Biofilm Formation: Molecular Basis and Functional Significance of Salivary α-Amylase Binding to Oral Streptococci Anna E. Nikitkova, Elaine M. Haase, and Frank A. Scannapieco Abstract Full Text PDF Figures Author Bios Supplemental material

Biodegradation

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Impact of Long-Term Diesel Contamination on Soil Microbial Community Structure Nora B. Sutton, Farai Maphosa, Jose A. Morillo, Waleed Abu Al-Soud, Alette A. M. Langenhoff, Tim Grotenhuis, Huub H. M. Rijnaarts, and Hauke Smidt Abstract Full Text PDF Figures Supplemental material

Comparative Genomic Analysis and Benzene, Toluene, Ethylbenzene, and o-, m- , and p-Xylene (BTEX) Degradation Pathways of Pseudoxanthomonas spadix BD-a59 Eun Jin Choi, Hyun Mi Jin, Seung Hyeon Lee, Renukaradhya K. Math, Eugene L. Madsen, and Che Ok Jeon Abstract Full Text PDF Figures Supplemental material

Biotechnology

Combinatorial Mutagenesis and Selection of Improved Signal Sequences and Their Application for High-Level Production of Translocated Heterologous Proteins in Escherichia coli Tonje Marita Bjerkan Heggeset, Veronika Kucharova, Ingemar Nærdal, Svein Valla, Håvard Sletta, Trond Erling Ellingsen, and Trygve Brautaset Abstract Full Text PDF Figures

Heterologous Carotenoid-Biosynthetic Enzymes: Functional Complementation and Effects on Carotenoid Profiles in Escherichia coli Gyu Hyeon Song, Se Hyeuk Kim, Bo Hyun Choi, Se Jong Han, and Pyung Cheon Lee Abstract Full Text PDF Figures Supplemental material

Environmental Microbiology

Identification of Methanoculleus spp. as Active Methanogens during Anoxic Incubations of Swine Manure Storage Tank Samples Maialen Barret, Nathalie Gagnon, Martin L. Kalmokoff, Edward Topp, Yris Verastegui, Stephen P. J. Brooks, Fernando Matias, Josh D. Neufeld, and Guylaine Talbot Abstract Full Text PDF Figures

Spatiotemporal Analysis of Cryptosporidium Species/Genotypes and Relationships with Other Zoonotic Pathogens in Surface Water from Mixed-Use Watersheds Graham Wilkes, Norma J. Ruecker, Norman F. Neumann, Victor P. J. Gannon, Cassandra Jokinen, Mark Sunohara, Edward Topp, Katarina D. M. Pintar, Thomas A. Edge, and David R. Lapen Abstract Full Text PDF Figures Supplemental material

Molecular Characterization of Human-Pathogenic Microsporidia and Cyclospora cayetanensis Isolated from Various Water Sources in Spain: a Year-Long Longitudinal Study Ana Luz Galván, Angela Magnet, Fernando Izquierdo, Soledad Fenoy, Cristina Rueda, Carmen Fernández Vadillo, Nuno Henriques-Gil, and Carmen del Aguila Abstract Full Text PDF Figures

Diet-Induced Alterations of Host Cholesterol Metabolism Are Likely To Affect the Gut Microbiota Composition in Hamsters Inés Martínez, Diahann J. Perdicaro, Andrew W. Brown, Susan Hammons, Trevor J. Carden, Timothy P. Carr, Kent M. Eskridge, and Jens Walter Abstract Full Text PDF Figures Supplemental material

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Surveying the Microbiome of Ants: Comparing 454 Pyrosequencing with Traditional Methods To Uncover Bacterial Diversity Stefanie Kautz, Benjamin E. R. Rubin, Jacob A. Russell, and Corrie S. Moreau Abstract Full Text PDF Figures Supplemental material

Enhanced Gene Detection Assays for Fumarate-Adding Enzymes Allow Uncovering of Anaerobic Hydrocarbon Degraders in Terrestrial and Marine Systems Frederick von Netzer, Giovanni Pilloni, Sara Kleindienst, Martin Krüger, Katrin Knittel, Friederike Gründger, and Tillmann Lueders Abstract Full Text PDF Figures Supplemental material

Comparative Analysis of Leptospira Strains Isolated from Environmental Soil and Water in the Philippines and Japan Mitsumasa Saito, Sharon Y. A. M. Villanueva, Antara Chakraborty, Satoshi Miyahara, Takaya Segawa, Tatsuma Asoh, Ryo Ozuru, Nina G. Gloriani, Yasutake Yanagihara, and Shin-ichi Yoshida Abstract Full Text PDF Figures

Distribution of Clostridium botulinum Type E Strains in Nunavik, Northern Quebec, Canada Daniel Leclair, Jeffrey M. Farber, Bill Doidge, Burke Blanchfield, Sandy Suppa, Franco Pagotto, and John W. Austin Abstract Full Text PDF Figures

Reconstruction of Novel Cyanobacterial Siphovirus Genomes from Mediterranean Metagenomic Fosmids Carolina Megumi Mizuno, Francisco Rodriguez-Valera, Inmaculada Garcia-Heredia, Ana- Belen Martin-Cuadrado,and Rohit Ghai Abstract Full Text PDF Figures Supplemental material

Environmental Transcription of mmoX by Methane-Oxidizing Proteobacteria in a Subarctic Palsa Peatland Susanne Liebner and Mette M. Svenning Abstract Full Text PDF Figures Supplemental material

Chitin-Induced Gene Expression in Secondary Metabolic Pathways of Streptomyces coelicolor A3(2) Grown in Soil Behnam Nazari, Michihiko Kobayashi, Akihiro Saito, Azam Hassaninasab, Kiyotaka Miyashita, and Takeshi Fujii Abstract Full Text PDF Figures Supplemental material

Poly-γ-D-Glutamic Acid Capsule Interferes with Lytic Infection of Bacillus anthracis by B. anthracis-Specific Bacteriophages David Negus, Jane Burton, Angela Sweed, Romuald Gryko, and Peter W. Taylor Abstract Full Text PDF Figures

Induction of Nitrate-Dependent Fe(II) Oxidation by Fe(II) in Dechloromonas sp. Strain UWNR4 and Acidovorax sp. Strain 2AN Anirban Chakraborty and Flynn Picardal Abstract Full Text PDF Figures Supplemental material

Enzymology and Protein Engineering

Cello-Oligosaccharide Oxidation Reveals Differences between Two Lytic Polysaccharide Monooxygenases (Family GH61) from Podospora anserina

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Mathieu Bey, Simeng Zhou, Laetitia Poidevin, Bernard Henrissat, Pedro M. Coutinho, Jean- Guy Berrin, and Jean-Claude Sigoillot Abstract Full Text PDF Figures

Systems Engineering of Tyrosine 195, Tyrosine 260, and Glutamine 265 in Cyclodextrin Glycosyltransferase from Paenibacillus macerans To Enhance Maltodextrin Specificity for 2-O-D-Glucopyranosyl-L-Ascorbic Acid Synthesis Ruizhi Han, Long Liu, Hyun-dong Shin, Rachel R. Chen, Jianghua Li, Guocheng Du, and Jian Chen Abstract Full Text PDF Figures Supplemental material

Clostridium carboxidivorans Strain P7T Recombinant Formate Dehydrogenase Catalyzes Reduction of CO2 to Formate Apostolos Alissandratos, Hye-Kyung Kim, Hayden Matthews, James E. Hennessy, Amy Philbrook, and Christopher J. Easton Abstract Full Text PDF Figures

Food Microbiology

Quantification of Yeast and Bacterial Gene Transcripts in Retail Cheeses by Reverse Transcription-Quantitative PCR Christophe Monnet, Cécile Straub, Jessie Castellote, Djamila Onesime, Pascal Bonnarme, and Françoise Irlinger Abstract Full Text PDF Figures Supplemental material

Landscape and Meteorological Factors Affecting Prevalence of Three Food- Borne Pathogens in Fruit and Vegetable Farms Laura K. Strawn, Esther D. Fortes, Elizabeth A. Bihn, Kendra K. Nightingale, Yrjö T. Gröhn, Randy W. Worobo, Martin Wiedmann, and Peter W. Bergholz Abstract Full Text PDF Figures Supplemental material

Intracellular Free Iron and Its Potential Role in Ultrahigh-Pressure-Induced Inactivation of Escherichia coli Yuan Yan, Joy G. Waite-Cusic, Periannan Kuppusamy, and Ahmed E. Yousef Abstract Full Text PDF Figures

Genetics and Molecular Biology

Molecular Control of Sucrose Utilization in Escherichia coli W, an Efficient Sucrose-Utilizing Strain Suriana Sabri, Lars K. Nielsen, and Claudia E. Vickers Abstract Full Text PDF Figures

Gene Flow, Recombination, and Selection in Cyanobacteria: Population Structure of Geographically Related Planktothrix Freshwater Strains Hanne Sogge, Thomas Rohrlack, Trine B. Rounge, Jørn Henrik Sønstebø, Ave Tooming- Klunderud, Tom Kristensen, and Kjetill S. Jakobsen Abstract Full Text PDF Figures Supplemental material

Molecular Analysis of Human and Canine Staphylococcus aureus Strains Reveals Distinct Extended-Host-Spectrum Genotypes Independent of Their Methicillin Resistance S. Vincze, I. Stamm, S. Monecke, P. A. Kopp, T. Semmler, L. H. Wieler, A. Lübke-Becker, and B. Walther

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Abstract Full Text PDF Figures Supplemental material

Regulons of Three Pseudomonas syringae pv. tomato DC3000 Iron Starvation Sigma Factors Eric Markel, Bronwyn G. Butcher, Christopher R. Myers, Paul Stodghill, Sam Cartinhour, and Bryan Swingle Abstract Full Text PDF Figures Supplemental material

Identification of Gold Nanoparticle-Resistant Mutants of Saccharomyces cerevisiae Suggests a Role for Respiratory Metabolism in Mediating Toxicity Mark R. Smith, Matthew G. Boenzli, Vihangi Hindagolla, Jun Ding, John M. Miller, James E. Hutchison, Jeffrey A. Greenwood, Hagai Abeliovich, and Alan T. Bakalinsky Abstract Full Text PDF Figures Supplemental material

Invertebrate Microbiology

Bacillus thuringiensis Metalloproteinase Bmp1 Functions as a Nematicidal Virulence Factor Xiaoxia Luo, Ling Chen, Qiong Huang, Jinshui Zheng, Wei Zhou, Donghai Peng, Lifang Ruan, and Ming Sun Abstract Full Text PDF Figures

Characterization of a Newly Discovered Symbiont of the Whitefly Bemisia tabaci (Hemiptera: Aleyrodidae) Xiao-Li Bing, Jiao Yang, Einat Zchori-Fein, Xiao-Wei Wang, and Shu-Sheng Liu Abstract Full Text PDF Figures Supplemental material

Methods

A New, Sensitive Marine Microalgal Recombinant Biosensor Using Luminescence Monitoring for Toxicity Testing of Antifouling Biocides Sophie Sanchez-Ferandin, Fanny Leroy, François-Yves Bouget, and Fabien Joux Abstract Full Text PDF Figures

Use of Flow Cytometry for Rapid, Quantitative Detection of Poliovirus-Infected Cells via TAT Peptide-Delivered Molecular Beacons Divya Sivaraman, Hsiao-Yun Yeh, Ashok Mulchandani, Marylynn V. Yates, and Wilfred Chen Abstract Full Text PDF Figures

Construction of a Broad-Host-Range Tn7-Based Vector for Single-Copy PBAD- Controlled Gene Expression in Gram-Negative Bacteria F. Heath Damron, Elizabeth S. McKenney, Herbert P. Schweizer, and Joanna B. Goldberg Abstract Full Text PDF Figures Supplemental material

Multiplex PCR Assay Targeting a Diguanylate Cyclase-Encoding Gene, cgcA, To Differentiate Species within the Genus Cronobacter L. Carter, L. A. Lindsey, C. J. Grim, V. Sathyamoorthy,K. G. Jarvis,G. Gopinath, C. Lee, J. A. Sadowski, L. Trach, M. Pava-Ripoll, B. A. McCardell, B. D. Tall, and L. Hu Abstract Full Text PDF Figures Supplemental material

Microbial Ecology

Predation Response of Vibrio fischeri Biofilms to Bacterivorus Protists Alba Chavez-Dozal, Clayton Gorman, Martina Erken, Peter D. Steinberg, Diane McDougald, and Michele K. Nishiguchi

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Abstract Full Text PDF Figures

Characterization of Newcastle Disease Viruses in Wild and Domestic Birds in Luxembourg from 2006 to 2008 Chantal J. Snoeck, Marianna Marinelli, Emilie Charpentier, Aurélie Sausy, Tom Conzemius, Serge Losch, and Claude P. Muller Abstract Full Text PDF Figures

Influence of Salmonella enterica Serovar Enteritidis Infection on the Development of the Cecum Microbiota in Newly Hatched Chicks H. Juricova, P. Videnska, M. Lukac, M. Faldynova, V. Babak, H. Havlickova, F. Sisak, and I. Rychlik Abstract Full Text PDF Figures

Physiology

Osmoprotection of Bacillus subtilis through Import and Proteolysis of Proline- Containing Peptides Adrienne Zaprasis, Jeanette Brill, Marietta Thüring, Guido Wünsche, Magnus Heun, Helena Barzantny, Tamara Hoffmann, and Erhard Bremer Abstract Full Text PDF Figures

Physiological and Metabolic Effects of Carbon Monoxide Oxidation in the Model Marine Bacterioplankton Ruegeria pomeroyi DSS-3 Michael Cunliffe Abstract Full Text PDF Figures

Plant Microbiology

Contribution of Nitrate Assimilation to the Fitness of Pseudomonas syringae pv. syringae B728a on Plants Audrey Parangan-Smith and Steven Lindow Abstract Full Text PDF Figures

Public Health Microbiology

Bifidobacterial Succession and Correlation Networks in a Large Unselected Cohort of Mothers and Their Children E. Avershina, O. Storrø, T. Øien, R. Johnsen, R. Wilson, T. Egeland, and K. Rudi Abstract Full Text PDF Figures Supplemental material

Persistence and Leaching Potential of Microorganisms and Mineral N in Animal Manure Applied to Intact Soil Columns M. G. Mostofa Amin, Anita Forslund, Xuan Thanh Bui, René K. Juhler, Søren O. Petersen, and Mette Lægdsmand Abstract Full Text PDF Figures

Erratum

Vol. 78, no. 23, 2012, Table of Contents Appl. Environ. Microbiol. January 2013 79:753; doi:10.1128/AEM.03511-12 Full Text PDF

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VOLUME 79, PART 3, FEBRUARY 2013 Website

Research articles

Biotechnology

Improved Production of L-Threonine in Escherichia coli by Use of a DNA Scaffold System Jun Hyoung Lee, Suk-Chae Jung, Le Minh Bui, Kui Hyeon Kang, Ji-Joon Song, and Sun Chang Kim Abstract Full Text PDF Figures Supplemental material

Contribution of Bacillomycin D in Bacillus amyloliquefaciens SQR9 to Antifungal Activity and Biofilm Formation Zhihui Xu, Jiahui Shao, Bing Li, Xin Yan, Qirong Shen, and Ruifu Zhang Abstract Full Text PDF Figures Supplemental material

Recombinant Bacillus subtilis That Grows on Untreated Plant Biomass Timothy D. Anderson, J. Izaak Miller, Henri-Pierre Fierobe, and Robert T. Clubb Abstract Full Text PDF Figures

Metabolic Engineering of Synechocystis sp. Strain PCC 6803 for Isobutanol Production Arul M. Varman, Yi Xiao, Himadri B. Pakrasi, and Yinjie J. Tang Abstract Full Text PDF Figures

Combinatorial Design of a Highly Efficient Xylose-Utilizing Pathway in Saccharomyces cerevisiae for the Production of Cellulosic Biofuels Byoungjin Kim, Jing Du, Dawn T. Eriksen, and Huimin Zhao Abstract Full Text PDF Figures Supplemental material

Development of Novel Sugar Isomerases by Optimization of Active Sites in Phosphosugar Isomerases for Monosaccharides Soo-Jin Yeom, Yeong-Su Kim, and Deok-Kun Oh Abstract Full Text PDF Figures Supplemental material

A Combined System for Engineering Glycosylation Efficiency and Glycan Structure in Saccharomyces cerevisiae Farnoush Parsaie Nasab, Markus Aebi, Gesche Bernhard,and Alexander Daniel Frey Abstract Full Text PDF Figures Supplemental material

Temperature- and Salinity-Decoupled Overproduction of Hydroxyectoine by Chromohalobacter salexigens Javier Rodríguez-Moya, Montserrat Argandoña, Fernando Iglesias-Guerra, Joaquín J. Nieto, and Carmen Vargas Abstract Full Text PDF Figures Supplemental material

Environmental Microbiology

Carriage and Fecal Counts of Cefotaxime M-Producing Escherichia coli in Pigs: a Longitudinal Study Katrine Hartung Hansen, Peter Damborg, Margit Andreasen, Søren Saxmose Nielsen, and Luca Guardabassi Abstract Full Text PDF Figures Aquaculture Journals Page: 42 of 167

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Inhibition of Staphylococcus aureus Invasion into Bovine Mammary Epithelial Cells by Contact with Live Lactobacillus casei Damien S. Bouchard, Lucie Rault, Nadia Berkova, Yves Le Loir, and Sergine Even Abstract Full Text PDF Figures Supplemental material

Aeromonas and Pseudomonas Species Carriers of ampC FOX Genes in Aquatic Environments Veiko Voolaid, Tanel Tenson, and Veljo Kisand Abstract Full Text PDF Figures

Enzymology and Protein Engineering

Functional Characterization of Reductive Dehalogenases by Using Blue Native Polyacrylamide Gel Electrophoresis Shuiquan Tang, Winnie W. M. Chan, Kelly E. Fletcher, Jana Seifert, Xiaoming Liang, Frank E. Löffler, Elizabeth A. Edwards, and Lorenz Adrian Abstract Full Text PDF Figures Supplemental material

Evolutionary and Genomic Microbiology

The Mangotoxin Biosynthetic Operon (mbo) Is Specifically Distributed within Pseudomonas syringae Genomospecies 1 and Was Acquired Only Once during Evolution Víctor J. Carrión, José A. Gutiérrez-Barranquero, Eva Arrebola, Leire Bardaji, Juan C. Codina, Antonio de Vicente, Francisco M. Cazorla, and Jesús Murillo Abstract Full Text PDF Figures Supplemental material

Adaptation and Heterogeneity of Escherichia coli MC1000 Growing in Complex Environments Pilar Eliana Puentes-Téllez, Martin Asser Hansen, Søren Johannes Sørensen, and Jan Dirk van Elsas Abstract Full Text PDF Figures Supplemental material

Food Microbiology

FLX Pyrosequencing Analysis of the Effects of the Brown-Algal Fermentable Polysaccharides Alginate and Laminaran on Rat Cecal Microbiotas Choa An, Takashi Kuda, Takahiro Yazaki, Hajime Takahashi, and Bon Kimura Abstract Full Text PDF Figures

Biofilm as an Environment for Dissemination of stx Genes by Transduction H. T. Solheim, C. Sekse, A. M. Urdahl, Y. Wasteson, and L. L. Nesse Abstract Full Text PDF Figures

Examination of the Genome-Wide Transcriptional Response of Escherichia coli O157:H7 to Cinnamaldehyde Exposure Jeyachchandran Visvalingam, Juan David Hernandez-Doria, and Richard A. Holley Abstract Full Text PDF Figures Supplemental material

Genetics and Molecular Biology

Distinct Roles of Phenol-Soluble Modulins in Spreading of Staphylococcus aureus on Wet Surfaces

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Eleni Tsompanidou, Emma L. Denham, Dörte Becher, Anne de Jong, Girbe Buist, Marleen van Oosten, Willem L. Manson, Jaap Willem Back, Jan Maarten van Dijl, and Annette Dreisbach Abstract Full Text PDF Figures Supplemental material

HbzF Catalyzes Direct Hydrolysis of Maleylpyruvate in the Gentisate Pathway of Pseudomonas alcaligenes NCIMB 9867 Kun Liu, Ting-Ting Liu, and Ning-Yi Zhou Abstract Full Text PDF Figures

Geomicrobiology

Outer Cell Surface Components Essential for Fe(III) Oxide Reduction by Geobacter metallireducens Jessica A. Smith, Derek R. Lovley, and Pier-Luc Tremblay Abstract Full Text PDF Figures Supplemental material

Anaerobic Coculture of Microalgae with Thermosipho globiformans and Methanocaldococcus jannaschii at 68°C Enhances Generation of n-Alkane-Rich Biofuels after Pyrolysis Kunio Yamane, Shigeru Matsuyama, Kensuke Igarashi, Motoo Utsumi, Yoshihiro Shiraiwa, and Tomohiko Kuwabara Abstract Full Text PDF Figures Supplemental material

Gene Identification and Substrate Regulation Provide Insights into Sulfur Accumulation during Bioleaching with the Psychrotolerant Acidophile Acidithiobacillus ferrivorans Maria Liljeqvist, Olena I. Rzhepishevska, and Mark Dopson Abstract Full Text PDF Figures Supplemental material

Invertebrate Microbiology

Characterization and Molecular Epidemiology of a Fungal Infection of Edible Crabs (Cancer pagurus) and Interaction of the Fungus with the Dinoflagellate Parasite Hematodinium Amanda L. Smith, Kristina M. Hamilton, Lucy Hirschle, Emma C. Wootton, Claire L. Vogan, Edward C. Pope, Daniel C. Eastwood, and Andrew F. Rowley Abstract Full Text PDF Figures

Methods

Mycobacteriophage Ms6 LysA: a Peptidoglycan Amidase and a Useful Analytical Tool Sebabrata Mahapatra, Charles Piechota, Filipa Gil, Yufang Ma, Hairong Huang, Michael S. Scherman, Victoria Jones, Martin S. Pavelka Jr., Jose Moniz-Pereira, Madalena Pimentel, Michael R. McNeil, and Dean C. Crick Abstract Full Text PDF Figures Supplemental material

Profiling In Situ Microbial Community Structure with an Amplification Microarray Darrell P. Chandler, Christopher Knickerbocker, Lexi Bryant, Julia Golova, Cory Wiles, Kenneth H. Williams, Aaron D. Peacock, and Philip E. Long Abstract Full Text PDF Figures Supplemental material

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Identification of Borrelia burgdorferi ospC Genotypes in Host Tissue and Feeding Ticks by Terminal Restriction Fragment Length Polymorphisms Kimberly Tsao, Stephen J. Bent, and Durland Fish Abstract Full Text PDF Figures

Autofluorescence as a Tool for Structural Analysis of Biofilms Formed by Nonpigmented Rapidly Growing Mycobacteria María-Carmen Muñoz-Egea, María García-Pedrazuela, Ignacio Mahillo, María Jesús García, and Jaime Esteban Abstract Full Text PDF Figures Supplemental material

Microbial Ecology

Detection of Putatively Thermophilic Anaerobic Methanotrophs in Diffuse Hydrothermal Vent Fluids Alexander Y. Merkel, Julie A. Huber, Nikolay A. Chernyh, Elizaveta A. Bonch-Osmolovskaya, and Alexander V. Lebedinsky Abstract Full Text PDF Figures Supplemental material

Recruitment and Rearrangement of Three Different Genetic Determinants into a Conjugative Plasmid Increase Copper Resistance in Pseudomonas syringae José A. Gutiérrez-Barranquero, Antonio de Vicente, Víctor J. Carrión, George W. Sundin, and Francisco M. Cazorla Abstract Full Text PDF Figures Supplemental material

Bacterial and Archaeal Diversity in Sediments of West Lake Bonney, McMurdo Dry Valleys, Antarctica Chao Tang, Michael T. Madigan, and Brian Lanoil Abstract Full Text PDF Figures Supplemental material

Mycology

Processivity and Enzymatic Mode of a Glycoside Hydrolase Family 5 Endoglucanase from Volvariella volvacea Fei Zheng and Shaojun Ding Abstract Full Text PDF Figures Supplemental material

Plant Microbiology

Diverse Microhabitats Experienced by Halomonas variabilis on Salt-Secreting Leaves Adrien Y. Burch, Omri M. Finkel, Juliana K. Cho, Shimshon Belkin, and Steven E. Lindow Abstract Full Text PDF Figures

The Type III Secretion System of Bradyrhizobium japonicum USDA122 Mediates Symbiotic Incompatibility with Rj2 Soybean Plants Takahiro Tsukui, Shima Eda, Takakazu Kaneko, Shusei Sato, Shin Okazaki, Kaori Kakizaki- Chiba, Manabu Itakura, Hisayuki Mitsui, Akifumi Yamashita, Kimihiro Terasawa, and Kiwamu Minamisawa Abstract Full Text PDF Figures Supplemental material

Public Health Microbiology

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Molecular Diversity of Bacteroidales in Fecal and Environmental Samples and Swine-Associated Subpopulations Regina Lamendella, Kent C. Li, Daniel Oerther, and Jorge W. Santo Domingo Abstract Full Text PDF Figures Supplemental material

Nontuberculous Mycobacteria, Fungi, and Opportunistic Pathogens in Unchlorinated Drinking Water in the Netherlands Paul W. J. J. van der Wielen and Dick van der Kooij Abstract Full Text PDF Figures Supplemental material

Biological and Physicochemical Wastewater Treatment Processes Reduce the Prevalence of Virulent Escherichia coli Dominic Frigon, Basanta Kumar Biswal, Alberto Mazza, Luke Masson, and Ronald Gehr Abstract Full Text PDF Supplemental material

Dynamics and Diversity of Escherichia coli in Animals and System Management of the Manure on a Commercial Farrow-to-Finish Pig Farm Mauricio Marchant and Miguel A. Moreno Abstract Full Text PDF Figures

Evidence for Phenotypic Plasticity among Multihost Campylobacter jejuni and C. coli Lineages, Obtained Using Ribosomal Multilocus Sequence Typing and Raman Spectroscopy Daniel S. Read, Dan J. Woodcock, Norval J. C. Strachan, Kenneth J. Forbes, Frances M. Colles, Martin C. J. Maiden, Felicity Clifton-Hadley, Anne Ridley, Ana Vidal, John Rodgers, Andrew S. Whiteley, and Samuel K. Sheppard Abstract Full Text PDF Figures Supplemental material

Wide Distribution and Genetic Diversity of “Candidatus Neoehrlichia mikurensis” in Rodents from China Hao Li, Jiafu Jiang, Fang Tang, Yi Sun, Zengde Li, Weilong Zhang, Zhengda Gong, Kun Liu, Hong Yang, Wei Liu, and Wuchun Cao Abstract Full Text PDF Figures Supplemental material

Link between Geographical Origin and Occurrence of Brucella abortus Biovars in Cow and Water Buffalo Herds Giorgia Borriello, Simone Peletto, Maria G. Lucibelli, Pier L. Acutis, Danilo Ercolini, and Giorgio Galiero Abstract Full Text PDF Figures Supplemental material

Escherichia coli and Klebsiella pneumoniae Producing CTX-M Cephalosporinase from Swine Finishing Barns and Their Association with Antimicrobial Use Dixie F. Mollenkopf, Jennifer M. Mirecki, Joshua B. Daniels, Julie A. Funk, Steven C. Henry, Glenn E. Hansen, Peter R. Davies, Tara S. Donovan, and Thomas E. Wittum Abstract Full Text PDF Figures

Enterohemorrhagic Escherichia coli O157:H7 Survival in an In Vitro Model of the Human Large Intestine and Interactions with Probiotic Yeasts and Resident Microbiota Jonathan Thévenot, Lucie Etienne-Mesmin, Sylvain Denis, Sandrine Chalancon, Monique Alric, Valérie Livrelli, and Stéphanie Blanquet-Diot Abstract Full Text PDF Figures

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VOLUME 96, PART 6, DECEMBER 2012 Website

Research Articles

Mini-Review

Lactic acid bacteria producing B-group vitamins: a great potential for functional cereals products Vittorio Capozzi, Pasquale Russo… Pages 1383-1394 Download PDF (319KB) View Article

Microbial degradation of chloroform M. Cappelletti, D. Frascari, D. Zannoni, S. Fedi Pages 1395-1409 Download PDF (378KB) View Article

Immobilized metal ion affinity chromatography: a review on its applications Randy Chi Fai Cheung, Jack Ho Wong, Tzi Bun Ng Pages 1411-1420 Download PDF (243KB) View Article

Monascus pigments Yanli Feng, Yanchun Shao, Fusheng Chen Pages 1421-1440 Download PDF (2860KB) View Article

Effects of encapsulation of microorganisms on product formation during microbial fermentations Johan O. Westman, Päivi Ylitervo… Pages 1441-1454 Download PDF (411KB) View Article

The plant strengthening root endophyte Piriformospora indica: potential application and the biology behind P. Franken Pages 1455-1464 Download PDF (219KB) View Article

Biotechnological Products and Process Engineering

Physiological heterogeneity of Pseudomonas taetrolens during lactobionic acid production Saúl Alonso, Manuel Rendueles, Mario Díaz Pages 1465-1477 Download PDF (1074KB) View Article

Improvement of bacterial cellulose production by manipulating the metabolic pathways in which ethanol and sodium citrate involved Yuanjing Li, Chunjie Tian, Hua Tian… Pages 1479-1487 Download PDF (433KB) View Article

Biotechnologically relevant enzymes and proteins

Bilirubin oxidase from Magnaporthe oryzae: an attractive new enzyme for biotechnological applications Fabien Durand, Sébastien Gounel… Pages 1489-1498 Download PDF (461KB) View Article

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Lactococcus lactis expressing food-grade β-galactosidase alleviates lactose intolerance symptoms in post-weaning Balb/c mice Jingjie Li, Wen Zhang, Chuan Wang, Qian Yu… Pages 1499-1506 Download PDF (456KB) View Article

Whole-cell hydroxylation of n-octane by Escherichia coli strains expressing the CYP153A6 operon Rama Krishna Gudiminchi, Charlene Randall… Pages 1507-1516 Download PDF (346KB) View Article

Purification and characterization of a novel extracellular inulinase from a new yeast species Candida kutaonensis sp. nov. KRF1T Bo Yuan, Nan Hu, Juan Sun, Shi-An Wang, Fu-Li Li Pages 1517-1526 Download PDF (333KB) View Article

Applied genetics and molecular biotechnology

Enhanced alpha-ketoglutaric acid production in Yarrowia lipolytica WSH-Z06 by regulation of the pyruvate carboxylation pathway Xiaoxia Yin, Catherine Madzak, Guocheng Du… Pages 1527-1537 Download PDF (792KB) View Article

Double Candida antarctica lipase B co-display on Pichia pastoris cell surface based on a self-processing foot-and-mouth disease virus 2A peptide Yu-Fei Sun, Ying Lin, Jun-Hui Zhang… Pages 1539-1550 Download PDF (798KB) View Article

Applied microbial and cell physiology

Membrane interaction and antibacterial properties of chensinin-1, an antimicrobial peptide with atypical structural features from the skin of Rana chensinensis Dejing Shang, Yue Sun, Che Wang, Shi Wei… Pages 1551-1560 Download PDF (432KB) View Article

Characterization of Bifidobacterium spp. strains for the treatment of enteric disorders in newborns Irene Aloisio, Cecilia Santini, Bruno Biavati… Pages 1561-1576 Download PDF (392KB) View Article

Methods and protocols

A novel integrated approach to quantitatively evaluate the efficiency of extracellular polymeric substances (EPS) extraction process Min Sun, Wen-Wei Li, Han-Qing Yu, Hideki Harada Pages 1577-1585 Download PDF (663KB) View Article

Environmental biotechnology

Methylotrophic methanogenesis governs the biogenic coal bed methane formation in Eastern Ordos Basin, China Hongguang Guo, Zhisheng Yu, Ruyin Liu… Pages 1587-1597 Download PDF (412KB) View Article

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Accelerated decolorization of reactive azo dyes under saline conditions by bacteria isolated from Arabian seawater sediment Azeem Khalid, Farzana Kausar, Muhammad Arshad… Pages 1599-1606 Download PDF (547KB) View Article

Antibiofilm activity of Streptomyces sp. BFI 230 and Kribbella sp. BFI 1562 against Pseudomonas aeruginosa Yong-Guy Kim, Jin-Hyung Lee, Chang-Jin Kim… Pages 1607-1617 Download PDF (428KB) View Article

Bioenergy and biofuels

Increase of organic solvent tolerance of Escherichia coli by the deletion of two regulator genes, fadR and marR Hye Yun Oh, Jae Ok Lee, Ok Bin Kim Pages 1619-1627 Download PDF (391KB) View Article

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VOLUME 97, PART 1, JANUARY 2013 Website

Research Articles

Mini-Review

Interactions of microorganisms with rare earth ions and their utilization for separation and environmental technology Hiroshi Moriwaki, Hiroki Yamamoto Pages 1-8 Download PDF (277KB) View Article

Properties and biotechnological applications of halohydrin dehalogenases: current state and future perspectives Zhong-Yu You, Zhi-Qiang Liu, Yu-Guo Zheng Pages 9-21 Download PDF (923KB) View Article

Nanobiotechnology as a novel paradigm for enzyme immobilisation and stabilisation with potential applications in biodiesel production Madan Lal Verma, Colin J. Barrow, Munish Puri Pages 23-39 Download PDF (458KB) View Article

Progress in the research of S-adenosyl-l-methionine production Ju Chu, Jiangchao Qian, Yingping Zhuang… Pages 41-49 Download PDF (279KB) View Article

Microbial cultivation and the role of microbial resource centers in the omics era Om Prakash, Yogesh Shouche, Kamlesh Jangid… Pages 51-62 Download PDF (431KB) View Article

Extrachromosomal genetic elements in Micrococcus Julián Rafael Dib, Wolfgang Liebl… Pages 63-75 Download PDF (324KB) View Article

Biochemical mutagens affect the preservation of fungi and biodiversity estimations

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R. Russell M. Paterson, Nelson Lima Pages 77-85 Download PDF (304KB) View Article

New strategies for drug discovery: activation of silent or weakly expressed microbial gene clusters Kozo Ochi, Takeshi Hosaka Pages 87-98 Download PDF (298KB) View Article

Biotechnological Products and Process Engineering

Combining in the melt physical and biological properties of poly(caprolactone) and chlorhexidine to obtain antimicrobial surgical monofilaments R. Scaffaro, L. Botta, M. Sanfilippo, G. Gallo… Pages 99-109 Download PDF (835KB) View Article

CAP, a new human suspension cell line for influenza virus production Yvonne Genzel, Ilona Behrendt, Jana Rödig… Pages 111-122 Download PDF (800KB) View Article

Production of polysaccharide from Agaricus subrufescens Peck on solid-state fermentation C. M. Camelini, A. Gomes, F. T. G. S. Cardozo… Pages 123-133 Download PDF (298KB) View Article

Controlling autonomous underwater floating platforms using bacterial fermentation Justin C. Biffinger, Lisa A. Fitzgerald… Pages 135-142 Download PDF (339KB) View Article

Reductive whole-cell biotransformation with Corynebacterium glutamicum: improvement of NADPH generation from glucose by a cyclized pentose phosphate pathway using pfkA and gapA deletion mutants Solvej Siedler, Steffen N. Lindner… Pages 143-152 Download PDF (299KB) View Article

Comparative characterization of recombinant ZZ protein–alkaline phosphatase and its application in enzyme immunoassays Jin-Bao Tang, Hong-Ming Yang, Shu-Juan Liang… Pages 153-158 Download PDF (221KB) View Article

Biotechnologically relevant enzymes and proteins

A comparative study of hydrolysis and transglycosylation activities of fungal β- glucosidases Christina Bohlin, Eigil Praestgaard… Pages 159-169 Download PDF (410KB) View Article

Mitsuaria chitosanase with unrevealed important amino acid residues: characterization and enhanced production in Pichia pastoris Nan Peng, Weiling Xu, Fan Wang, Jinlong Hu… Pages 171-179 Download PDF (354KB) View Article

4,6-α-Glucanotransferase activity occurs more widespread in Lactobacillus strains and constitutes a separate GH70 subfamily Hans Leemhuis, Willem P. Dijkman… Pages 181-193

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A comparison of two novel alcohol dehydrogenase enzymes (ADH1 and ADH2) from the extreme halophile Haloferax volcanii Leanne M. Timpson, Ann-Kathrin Liliensiek… Pages 195-203 Download PDF (256KB) View Article

Efficient (R)-3-hydroxybutyrate production using acetyl CoA-regenerating pathway catalyzed by coenzyme A transferase Ken’ichiro Matsumoto, Takehiro Okei, Inori Honma… Pages 205-210 Download PDF (256KB) View Article

Polyester hydrolytic and synthetic activity catalyzed by the medium-chain- length poly(3-hydroxyalkanoate) depolymerase from Streptomyces venezuelae SO1 Marta Santos, Joana Gangoiti, Helmut Keul… Pages 211-222 Download PDF (621KB) View Article

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VOLUME 48, ISSUE 4, AUGUST 1999 Website

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VOLUME 376-379, ISSUE , FEBRUARY 2013 Website

Research articles

Diseases

Retention of viable microsporidial (Loma salmonae) spores within the blue mussel (Mytilus edulis): Use of an experimental laboratory model probing pathogen transfer within a multi-trophic aquaculture setting Sarah H. McConnachie, Nicole J. Guselle, David J. Speare Show preview | PDF (275 K) | Related articles | Related reference work articles Highlights ► Upon ingestion by blue mussels, Loma salmonae spores remain infective. ►Spores remain viable within blue mussels for at least 7d post-exposure. ►Spores appear to remain viable upon release from blue mussels to the environment. ►Mussels act as a reservoir for Loma salmonae, which may impact cultured salmonids.

Effects of dietary probiotic, Lactococcus lactis subsp. lactis I2, supplementation on the growth and immune response of olive flounder (Paralichthys olivaceus) Won-Seok Heo, Yu-Ri Kim, Eun-Young Kim, Sungchul C. Bai, In-Soo Kong Show preview | PDF (314 K) | Related articles | Related reference work articles Highlights ► The growth rate of fish was increased in the I2-cell supplemented group. ► Non-specific immune parameters enhanced in fish supplemented with I2-cell. ► 100% survivability was observed in I2-group after challenge with S. iniae.

Establishment of a continuous cell line from southern bluefin tuna (Thunnus maccoyii) Peter A. Bain, Rhonda G. Hutchinson, Alexandra B. Marks, Mark St.J. Crane, Kathryn A. Schuller Show preview | PDF (616 K) | Related articles | Related reference work articles

In vivo therapeutic efficacy of recombinant Penaeus monodon antiviral protein (rPmAV) administered in three different forms to WSSV infected Penaeus monodon Mujahidkhan Pathan, P. Gireesh-Babu, A. Pavan-Kumar, K. Jeena, Rupam Sharma, M. Makesh, K. Pani Prasad, Gopal Krishna Show preview | PDF (440 K) | Related articles | Related reference work articles Highlights ► The protective efficacy of rPmAV (3 forms) in WSSV infected P. monodon was tested. ► Chitosan-pCMV-His-PmAV nanoparticles gave survival rate of 83.3% on 15th d.p.i. ► rPmAV protein expressed in FHM cell line gave survival rate of 66.7%. ► rPmAV can be used as therapeutic molecule in vivo in WSSV infected shrimp.

Detection of two distinct types of hemolymphatic prophenoloxidase and their differential responses in the black tiger shrimp, Penaeus monodon, upon infection by white spot syndrome virus Sankaranarayanan Radha, Periasamy Mullainadhan, Munusamy Arumugam Show preview | PDF (896 K) | Related articles | Related reference work articles Highlights

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► Two types of proPO detected in shrimp serum ► proPO-1 is SDS-activable. ► proPO-2 is predominant and spontaneously activable. ► They show differential response during WSSV infection.

Analysis on the dynamic changes of the amount of WSSV in Chinese shrimp Fenneropenaeus chinensis during infection Yumiao Sun, Fuhua Li, Jianhai Xiang Show preview | PDF (931 K) | Related articles | Related reference work articles Highlights ► The viral load changes in vivo throughout the whole infection course are studied. ► The progress rate of WSSV in different tissues is different. ► The immune gene expression profiles are associated with viral load changes. ► Two indexes signaling the infection outcome for early warnings are proposed.

Naturally infected channel catfish (Ictalurus punctatus) concurrently transmit Ichthyophthirius multifiliis and Edwardsiella ictaluri to naïve channel catfish De-Hai Xu, Craig A. Shoemaker, Qizhong Zhang, Phillip H. Klesius Show preview | PDF (299 K) | Related articles | Related reference work articles Highlights ► Documented coinfection of two important pathogens from pond infected catfish. ► Demonstrated transmission of parasites and bacteria concomitantly. ► Demonstrated the need for biosecurity to prevent disease transmission.

Studies on ulcerative disease caused by Aeromonas caviae-like bacterium in Indian catfish, Clarias batrachus (Linn) John Thomas, N. Madan, K.S.N. Nambi, S. Abdul Majeed, A. Nazeer Basha, A.S. Sahul Hameed Show preview | PDF (599 K) | Related articles | Related reference work articles Highlights ► Study the prevalence of bacterial ulcerative disease in Clarias batrachus. ► Identification, causative organism for ulcerative syndrome in catfish. ► Confirmation of Aeromonas caviae by PCR.

Genetics

A snail's pace: A preliminary analysis of the effects of stress and genetics on movement of Haliotis Nick Robinson, Ben Smith, Ira Cooke, Jan Strugnell Show preview | PDF (940 K) | Related articles | Related reference work articles Highlights ► We examined movement in abalone subjected to different stress histories. ► Stress affects distance travelled in a grid marked slab tank. ► Distance moved is a heritable trait. ► Parental origin is associated with distance travelled.

Deeper insight into the origin and spread of European common carp (Cyprinus carpio carpio) based on mitochondrial D-loop sequence polymorphisms Klaus Kohlmann, Petra Kersten Show preview | PDF (567 K) | Related articles | Related reference work articles Highlights ► Seven new complete D-loop haplotypes found in European/Central Asian common carp. ► Further support for a common ancestry of European and Central Asian common carp. ► Postglacial spread of common carp from Ponto-Caspian Sea basin into Europe suggested. ► Reduction of D-loop variability in European domesticated common carp demonstrated.

Nutrition Aquaculture Journals Page: 54 of 167

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Lipid composition and metabolism of European sea bass (Dicentrarchus labrax L.) fed diets containing wheat gluten and legume meals as substitutes for fish meal M. Messina, G. Piccolo, F. Tulli, C.M. Messina, G. Cardinaletti, E. Tibaldi Show preview | PDF (307 K) | Related articles | Related reference work articles Highlights ► We tested wheat gluten, soybean and pea as ingredients in European sea bass diets. ► The growth performance was not affected by vegetable ingredients. ► Lipid metabolism and tissue distribution were affected by vegetable ingredients. ► PCA of fatty acids allows to space out fish fed fish meal-based diet from fish fed wheat gluten-based diets. ► Dietary soybean decreased lipid, namely cholesterol, in sea bass muscle and plasma.

Comparison of the effects of the dietary addition of two lactic acid bacteria on the development and conformation of sea bass larvae, Dicentrarchus labrax, and the influence on associated microbiota Faouzi Lamari, Mathieu Castex, Thibaut Larcher, Mireille Ledevin, David Mazurais, Amina Bakhrouf, François-Joël Gatesoupe Show preview | PDF (1184 K) | Related articles | Related reference work articles Highlights ► The development of seabass larvae was affected by 2 dietary lactic acid bacteria. ► Pediococcus acidilactici improved the rate of normal and complete ossification. ► Lactobacillus casei increased the incidence of vertebral deformities. ► This was related to differences observed in gene expression of osteocalcin. ► The 2 bacteria affected also differently the microbiota associated with the larvae.

Utilisation of carbohydrate by yellowtail kingfish Seriola lalandi M.A. Booth, M.D. Moses, G.L. Allan Show preview | PDF (455 K) | Related articles | Related reference work articles Highlights ► The ability of Seriola lalandi to utilise carbohydrate was tested. ► Intraperitoneal injection of glucose caused prolonged hyperglycaemia. ► Feeding glucose caused prolonged hyperglycaemia. ► Extruded wheat or gelatinised wheat starch had a moderate protein- sparing effect. ► Weight gain and feed conversion was negatively affected by carbohydrate.

Physiology and Endocrinology: Fish

Light conditions for larval rearing of meagre (Argyrosomus regius) Roser Vallés, Alicia Estévez Show preview | PDF (512 K) | Related articles | Related reference work articles Highlights ► Larval response to a particular characteristic of light is species specific ► The effect of photoperiod and light intensity on meagre larval rearing ► The best results in growth were obtained using long photoperiods and medium intensity ► High light intensity and continuous light induced a deleterious effect on larvae

Proteomic evaluation of potentiated sulfa treatment on gilthead sea bream (Sparus aurata L.) liver Inmaculada Varó, Juan C. Navarro, George Rigos, José Del Ramo, Josep Alvar Calduch- Giner, Adoración Hernández, José Pertusa, Amparo Torreblanca Show preview | PDF (702 K) | Related articles | Related reference work articles Highlights ► Molecular study about effects of potentiated sulfa on liver of gilthead sea bream. ► A set of 41 proteins was differentially expressed in response to treatment. ► The proteins identified have not been related before to potentiated sulfa effect. ► The proteins identified are involved in common cell/tissue stress response. Aquaculture Journals Page: 55 of 167

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Effects of the thermal threshold and the timing of temperature reduction on the initiation and course of oocyte development in cultured female of Eurasian perch Perca fluviatilis A. Abdulfatah, P. Fontaine, P. Kestemont, S. Milla, M. Marie Show preview | PDF (1297 K) | Related articles | Related reference work articles Highlights ► We study the effect of temperature reduction on the oogenesis in Eurasian perch. ► The gonadogenesis is induced even with exposure to high and constant temperature. ► The temperature only plays a modulator role on this induction. ► The optimal threshold of temperature decrease is around 6–14 °C.

The effect of NovaSil dietary supplementation on the growth and health performance of Nile tilapia (Oreochromis niloticus) fed aflatoxin-B1 contaminated feed Katherine E. Zychowski, Camilo Pohlenz, Travis Mays, Amelia Romoser, Michael Hume, Alejandro Buentello, Delbert M. Gatlin III, Timothy D. Phillips Show preview | PDF (790 K) | Related articles | Related reference work articles Highlights ► Biological effects of Aflatoxin B1 were examined in Nile tilapia. ► The efficacy of NovaSil, a montmorillonite clay, was assessed as an aflatoxin binder. ► Aflatoxin B1 at 1.5 and 3.0 ppm negatively impacted tilapia over 10 weeks. ► NovaSil provided a degree of protection, but was not as efficacious as hypothesized.

Physiology and Endocrinology: Molluscs and Crustaceans

The effect of stocking density on growth, metabolism and ammonia–N excretion during larval ontogeny of the spiny lobster Sagmariasus verreauxi Mark A. Jensen, Quinn P. Fitzgibbon, Chris G. Carter, Louise R. Adams Show preview | PDF (652 K) | Related articles | Related reference work articles Highlights ► Sagmariasus verreauxi phyllosoma were cultured at high and low density ► Growth and development was more advanced in low density phyllosoma. ► The O:N ratio decreased in final instar phyllosoma. ► Routine metabolic rate increased in late stage phyllosoma. ► Late stage phyllosoma shifted towards protein catabolism.

Development of an analytical method to detect metabolites of nitrofurans: Application to the study of furazolidone elimination in Vietnamese black tiger shrimp (Penaeus monodon) Caroline Douny, Joëlle Widart, Edwin De Pauw, Frédéric Silvestre, Patrick Kestemont, Huynh Thi Tu, Nguyen Thanh Phuong, Guy Maghuin-Rogister, Marie-Louise Scippo Show preview | PDF (272 K) | Related articles | Related reference work articles Highlights ► A LC–MS/MS method to detect residues of nitrofuran in shrimps was developed. ► An “in-house” validation of the method for shrimp analysis was conducted. ► An experiment of contamination was realized with furazolidone in Penaeus monodon. ► Residues of furazolidone were detected in shrimps after 28 days of decontamination.

Seasonal change in mitochondrial function and metabolic enzyme activity of different populations of the mud crab, Scylla paramamosain, from China Zi-Ming Liu, Gui-Zhong Wang, Li-Sheng Wu, Zhao-Shu Zeng, Xue-Lei Chen Show preview | PDF (1161 K) | Related articles | Related reference work articles Highlights ► Mitochondrial function and enzyme activity of mud crabs were measured. ► The metabolic levels of northern were higher than southern population in cold season. ► There were also some differences between these two populations in summer. ► The metabolic Aquaculture Journals Page: 56 of 167

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levels of these two populations were the same in autumn. ► Northern population adapted better to low temperature than southern population.

Effects of chemical cues on larval settlement of the flat oyster (Ostrea edulis L.): A hatchery approach Crimgilt Mesías-Gansbiller, Arturo Silva, Verónica Maneiro, Antonio Pazos, José Luís Sánchez, M. Luz Pérez-Parallé Show preview | PDF (312 K) | Supplementary content | Related articles | Related reference work articles Highlights ► First study to determine the effect of artificial inducers on O. edulis settlement ► All the chemicals induced larvae to settle at some concentration with low toxicity. ► GABA was the most effective inducer of larval settlement in O. edulis larvae. ► In the hatchery GABA increases the settlement with a higher survival rate. ► GABA also promotes the synchronisation and a faster spat growth.

Sex steroid levels and expression patterns of estrogen receptor gene in the oyster Crassostrea angulata during reproductive cycle Jianbin Ni, Zhen Zeng, Caihuan Ke Show preview | PDF (3589 K) | Related articles | Related reference work articles Highlights ► The levels of E2 and T of oyster were closely related to the reproductive cycle. ► A full- length cDNA (3161 bp) of ER from C. angulata was cloned and characterized. ► caER mRNA was abundantly expressed in ovary and distributed in “auxiliary cells”. ► caER expression varied regularly throughout the gonad development of oyster. ► Sex steroids and ER may perform an important role in the gonad development of oyster.

Growth and biochemistry of the spiny lobster Sagmariasus verreauxi cultured at low and high density from hatch to puerulus Mark A. Jensen, Chris G. Carter, Louise R. Adams, Quinn P. Fitzgibbon Show preview | PDF (494 K) | Related articles | Related reference work articles Highlights ► Sagmariasus verreauxi phyllosoma were cultured at high and low density. ► Growth and development was more advanced in low density phyllosoma. ► The C:N ratio decreased in final instar phyllosoma. ► Lipid reserves decreased by 21% between instar 17 and the puerulus stage. ► Phyllosoma accumulate lipid reserves to fuel metamorphosis and the puerulus stage.

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VOLUME 52, ISSUE 1, JANUARY 2013 Website

Research articles

Numerical simulation of the flow field inside and around gravity cages Yun-Peng Zhao, Chun-Wei Bi, Guo-Hai Dong, Fu-Kun Gui, Yong Cui, Tiao-Jian Xu Show preview | PDF (2353 K) | Related articles | Related reference work articles Highlights ► The porous media model is developed to study the flow through fishing cages. ► Flow fields inside and around a gravity cage and multiple cages are presented. ► The effect of spacing distances and numbers of cage on flow field is investigated.

Physical and numerical investigation of the hydrodynamic implications of aquaculture farms Fearghal O’Donncha, Michael Hartnett, Stephen Nash Show preview | PDF (2552 K) | Related articles | Related reference work articles Highlights ► In this research we assess the hydrodynamic and water quality implications of structures supporting aquaculture activities. ► Scale modelling studies are used to quantify the impact of these structures. ► A numerical model is extended and refined to model the effects of aquaculture based on the laboratory data. ► The implications for particle residence time and water quality are assessed.

A novel approach for ammonia removal from fresh-water recirculated aquaculture systems, comprising ion exchange and electrochemical regeneration Youri Gendel, Ori Lahav Show preview | PDF (730 K) | Related articles | Related reference work articles Graphical abstract

Highlights + ► A new process was introduced and applied for physico-chemical NH4 oxidation. ► Process is insensitive to temperature and can be switched on and off at will. ► Tilapia grew from 35.8 g to 107.1 g at a rate matching their potential growth rate. ► The system converts ammonia directly to the benign N2(g) in one oxidation step. ► The process was shown feasible from both the operational and economic standpoints.

Performance of Pacific white shrimp Litopenaeus vannamei raised in biofloc systems with varying levels of light exposure Manecas Baloi, Rafael Arantes, Rodrigo Schveitzer, Caio Magnotti, Luis Vinatea

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Show preview | PDF (397 K) | Related articles | Related reference work articles Highlights ► The performance of Litopenaeus vannamei raised in a biofloc system without light was evaluated. ► Most of water quality parameters were no significant differences among treatments. ► Phytoplankton had a major role in improving shrimp growth. ► L. vannamei can be raised without light in biofloc system.

Comparing the effects of feeding a grain- or a fish meal-based diet on water quality, waste production, and rainbow trout Oncorhynchus mykiss performance within low exchange water recirculating aquaculture systems John Davidson, Christopher Good, Frederic T. Barrows, Carla Welsh, P. Brett Kenney, Steven T. Summerfelt Show preview | PDF (797 K) | Related articles | Related reference work articles Highlights ► Rainbow trout growth, feed conversion, and survival were similar between diets. ► TP and true color were greatest in water recirculating systems fed a fish meal diet. ► TAN, TSS and BOD were greatest in recirculating systems fed a grain-based diet. ► The microscreen filter removed more TSS, TP, and TN than the settler for both diets. ► Grain- based diets can be used to produce trout within low exchange systems.

Automated sorting for size, sex and skeletal anomalies of cultured seabass using external shape analysis C. Costa, F. Antonucci, C. Boglione, P. Menesatti, M. Vandeputte, B. Chatain Show preview | PDF (666 K) | Related articles | Related reference work articles Highlights ► Tools for on-line sorting of sea bass based on size, sex and abnormalities was developed. ► Tools are based on image analysis and utilizing outline morphometry. ► These analyses are combined with the multivariate techniques. ► For the size estimation the regression efficiency resulted equal to 0.9772. ► The discrimination efficiency for sex and malformation estimation was equal to 82.05% and 88.21% respectively.

Flow pattern in aquaculture circular tanks: Influence of flow rate, water depth, and water inlet & outlet features Joan Oca, Ingrid Masalo Show preview | PDF (608 K) | Related articles | Related reference work articles Highlights ► Tangential velocities in a circular tank are measured with different configurations. ► A model is proposed to estimate the distribution of velocities in circular tanks. ► Operating conditions allow to reach more suitable speed distributions in tanks.

Inorganic nitrogen dynamics in sequencing batch reactors using biofloc technology to treat aquaculture sludge Guo-zhi Luo, Yoram Avnimelech, Yun-feng Pan, Hong-xin Tan Show preview | PDF (459 K) | Related articles | Related reference work articles Highlights ► Focused on inorganic nitrogen syndrome in SBR using BFT to treat aquaculture sludge. ► Ammonium decreased from 13.22 ± 0.98 mg N/L to 0.40 ± 0.02 mg N/L within 6 h. ► Nitrate decreased from 72.41 ± 1.34 mg N/L to 0.10 ± 0.02 mg N/L with 5 h. ► Nitrification progress was observed during start-up of reactors.

Performance of sequencing microbead biofilters in a recirculating aquaculture system Huang Liu, Xuan Che, Yulei Zhang Show preview | PDF (643 K) | Related articles | Related reference work articles Highlights Aquaculture Journals Page: 59 of 167

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► A new kind of self-clean biofilter was proposed, which can be used for RAS. ► The TAN removal rate of the biofilter was about 600 g/(m3 day). ► The movement of the media could increase the treatment efficiency significantly. ► IThe biofilter can be working under high TSS concentration properly.

AES Application Form Show preview | PDF (151 K) | Related articles | Related reference work articles

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VOLUME 20, PART 6, DECEMBER 2012 Website

Research articles

OriginalPaper

Use of the probiotic Shewanella putrefaciens Pdp11 on the culture of Senegalese sole (Solea senegalensis, Kaup 1858) and gilthead seabream (Sparus aurata L.) S. T. Tapia-Paniagua, P. Díaz-Rosales, J. M. León-Rubio… Pages 1025-1039 Download PDF (336KB) View Article

Stocking density affects growth and metabolic parameters in the brill (Scophthalmus rhombus) M. Herrera, I. Ruíz-Jarabo, I. Hachero, L. Vargas-Chacoff… Pages 1041-1052 Download PDF (378KB) View Article

Effect of dietary protein level and source on digestive proteolytic enzyme activity in juvenile Senegalese sole, Solea senegalensis Kaup 1850 Ana Rodiles, Ester Santigosa, Marcelino Herrera… Pages 1053-1070 Download PDF (378KB) View Article

Identification of a photolabile period for reducing sexual maturation in juvenile male sea bass (Dicentrarchus labrax) by means of a continuous light regime Rafael Rodríguez, Alicia Felip, Vinicius Cerqueira… Pages 1071-1083 Download PDF (369KB) View Article

Daily rhythms of digestive physiology, metabolism and behaviour in the European eel (Anguilla anguilla) J. F. López-Olmeda, I. López-García, M. J. Sánchez-Muros… Pages 1085-1096 Download PDF (374KB) View Article

The effects of salinity on the fertilization rate and rearing of the Persian sturgeon (Acipenser persicus) larvae M. Mardaneh Khatooni, B. Mojazi Amiri, A. Mirvaghefi… Pages 1097-1105 Download PDF (348KB) View Article

Environmental nitrite and aquaculture: a perspective J. R. Tomasso Pages 1107-1116 Download PDF (347KB) View Article

The effect of ploidy on the fatty acid profile during the reproductive cycle of female rainbow trout (Oncorhynchus mykiss) C. S. Ribeiro, A. D. Gomes, V. A. R. O. Vieira, Y. A. Tabata… Pages 1117-1137 Download PDF (267KB) View Article

Fatty acids as a tool to compare cachara (Pseudoplatystoma reticulatum) (Siluriformes: Pimelodidae) and hybrid (Pseudoplatystoma corruscans × Pseudoplatystoma reticulatum) larvae during early development P. H. Mello, B. C. Araújo, R. L. L. Venturieri, R. G. Moreira Pages 1139-1160 Download PDF (284KB) View Article

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The influence of captive breeding on the fatty acid profiles of Salminus hilarii (Characiformes: Characidae) eggs and larvae Bruno C. Araújo, Renato M. Honji, Paulo H. de Mello… Pages 1161-1181 Download PDF (245KB) View Article

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VOLUME 19, PART 1, FEBRUARY 2013 Website

Research articles

Growth, body composition, intestinal enzyme activities and microflora of juvenile Jian carp (Cyprinus carpio var. Jian) fed graded levels of dietary valine (pages 1–14) M. Dong, L. Feng, S.-Y. Kuang, Y. Liu, J. Jiang, K. Hu, W.-D. Jiang, S.-H. Li, L. Tang and X.-Q. Zhou Abstract Full Article (HTML) PDF(1179K) References

Seasonal changes in muscle structure and flesh quality of 0+ and 1+ Atlantic salmon (Salmo salar L.): impact of feeding regime and possible roles of ghrelin (pages 15–34) C.A. Johnsen, Ø. Hagen, C. Solberg, B.T.H. Björnsson, E. Jönsson, S.J.S. Johansen and E.Å. Bendiksen Abstract Full Article (HTML) PDF(1388K) References

Effect of dietary oxidized fish oil and vitamin C supplementation on growth performance and reduction of oxidative stress in Red Sea Bream Pagrus major (pages 35–44) J. Gao, S. Koshio, M. Ishikawa, S. Yokoyama, B.T. Nguyen and R.E. Mamauag Abstract Full Article (HTML) PDF(853K) References

Effects of myo-inositol on proliferation, differentiation, oxidative status and antioxidant capacity of carp enterocytes in primary culture (pages 45–53) W.-D. Jiang, S.-Y. Kuang, Y. Liu, J. Jiang, K. Hu, S.-H. Li, L. Tang, L. Feng and X.-Q. Zhou Abstract Full Article (HTML) PDF(939K) References

Dietary nucleotide supplements influence the growth, haemato-immunological parameters and stress responses in endangered Caspian brown trout (Salmo trutta caspius Kessler, 1877) (pages 54–63) A. Abedian Kenari, N. Mahmoudi, M. Soltani and S. Abediankenari Abstract Full Article (HTML) PDF(957K) References

Effects of low and medium levels of red alga Nori (Porphyra yezoensis Ueda) in the diets on growth, feed utilization and metabolism in intensively fed Nile tilapia, Oreochromis niloticus (L.) (pages 64–73) T. Stadtlander, W.K.B. Khalil, U. Focken and K. Becker Abstract Full Article (HTML) PDF(903K) References

Evaluation of fermented soybean meal in the practical diets for juvenile Chinese sucker, Myxocyprinus asiaticus (pages 74–83) Y.C. Yuan, Y.C. Lin, H.J. Yang, Y. GONG, S.Y. Gong and D.H. Yu Abstract Full Article (HTML) PDF(848K) References

Effects of replacing fish meal with soybean meal on growth, body composition and digestive enzyme activities of juvenile Chinese sucker, Myxocyprinus asiaticus (pages 84–90) D.H. YU, S.Y. GONG, Y.C. YUAN and Y.C. LIN Abstract Full Article (HTML) PDF(740K) References

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Apparent digestibility of nutrients in grass carp (Ctenopharyngodon idellus) diet supplemented with graded levels of neutral phytase using pretreatment and spraying methods (pages 91–99) L.W. Liu, J.M. Su, T. Zhang, X.-F. Liang and Y.L. Luo Abstract Full Article (HTML) PDF(773K) References

The effect of dipeptide, Lys-Gly, supplemented diets on digestive tract histology in juvenile yellow perch (Perca flavescens) (pages 100–109) T. Ostaszewska, K. Dabrowski, M. Kamaszewski, K. Kwasek, M. Grodzik and J. Bierla Abstract Full Article (HTML) PDF(1174K) References

Effects of vitamin C inclusion in practical diets on survival and growth of juvenile crayfish (Pacifastacus leniusculus Dana, Astacidae) from the onset of exogenous feeding (pages 110–116) J.D. Celada, J.B. Fuertes, J.M. Carral, M. Sáez-Royuela, Á. González and Á. González- Rodríguez Abstract Full Article (HTML) PDF(1096K) References

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VOLUME 44, PART 1, DECEMBER 2012 Website

Research articles

Local feed fish supplies and possible offshore aquaculture in California (pages 1– 7) Rögnvaldur Hannesson and Samuel F. Herrick Jr Abstract Full Article (HTML) PDF(265K) References

Effects of high temperature on the growth of European whitefish (Coregonus lavaretus L.) (pages 8–12) Sten Ivar Siikavuopio, Rune Knudsen, Per Arne Amundsen, Bjørn Steinar Sæther and Philip James Abstract Full Article (HTML) PDF(261K) References

Effect of probiotic (Bacillus spp.) addition during larvae and postlarvae culture of the white shrimp Litopenaeus vannamei (pages 13–21) Emanuell Felipe Silva, Marcelo Augusto Soares, Nathalia Ferreira Calazans, Joana Lyra Vogeley, Bruna Cáritas do Valle, Roberta Soares and Silvio Peixoto Abstract Full Article (HTML) PDF(191K) References

Growth and survival of the juvenile yellowleg shrimp Farfantepenaeus californiensis cohabiting with the green feather alga Caulerpa sertularioides at different temperatures (pages 22–30) Guillermo Portillo-Clark, Ramón Casillas-Hernández, Rosalía Servín-Villegas and Francisco J. Magallón-Barajas Abstract Full Article (HTML) PDF(280K) References

Growth of the fan mussel Pinna nobilis (Linnaeus, 1758) (Mollusca: Bivalvia) in experimental cages in the South Adriatic Sea (pages 31–40) Valter Kožul, Nikša Glavić, Jakša Bolotin and Nenad Antolović Abstract Full Article (HTML) PDF(432K) References

Growth, survival and fatty acid composition of Rhamdia quelen (Quoy and Gaimard, 1824) larvae fed on artificial diet alone or in combination with Artemia nauplii (pages 41–49) María Salhi and Martin Bessonart Abstract Full Article (HTML) PDF(241K) References

Effect of strain and selection line on the fecundity of the cyclopoid copepod Paracyclopina nana Smirnov, 1935 (pages 50–58) Kyun-Woo Lee, Jung-Hoon Kang, Heum Gi Park and Hans-U Dahms Abstract Full Article (HTML) PDF(320K) References

Dry shipper cryopreservation of seven-band grouper (Epinephelus septemfasciatusThunberg) spermatozoa (pages 59–66) Ivan Chong Chu Koh, Daisuke Tanaka, Takayoshi Itagane, Masaharu Tsuji, Yasushi Tsuchihashi and Hiromi Ohta Abstract Full Article (HTML) PDF(330K) References

Ultraviolet light and semi-recirculating systems in artificial incubation of noble crayfish (Astacus astacus) eggs: opportunities and limitations (pages 67–74)

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Antonín Kouba, Hamid Niksirat, Iryna Kuklina, Miloš Buřič and Pavel Kozák Abstract Full Article (HTML) PDF(255K) References

Floc contribution on spawning performance of blue shrimp Litopenaeus stylirostris (pages 75–85) Maurício Emerenciano, Gerard Cuzon, Jean Goguenheim and Gabriela Gaxiola, AQUACOP Abstract Full Article (HTML) PDF(416K) References

Vibrio alginolyticus infection in Asian seabass (Lates calcarifer, Bloch) reared in open sea floating cages in India (pages 86–92) Sulumane Ramachandra Krupesha Sharma, Gaurav Rathore, Dev K Verma, Narasimhulu Sadhu and Kuttickal Kuriakose Philipose Abstract Full Article (HTML) PDF(459K) References

Efficient utilization of dietary lipids in Octopus vulgaris (Cuvier 1797) fed fresh and agglutinated moist diets based on aquaculture by-products and low price trash species (pages 93–105) Juan Estefanell, Javier Roo, Rafael Guirao, Juan Manuel Afonso, Hipólito Fernández-Palacios, Marisol Izquierdo and Juan Socorro Abstract Full Article (HTML) PDF(230K) References

Larviculture of burbot (Lota lota L.): larval rearing using Artemia and weaning onto dry feed (pages 106–113) Hendrik Wocher, Alexander Harsányi and Frieder J Schwarz Abstract Full Article (HTML) PDF(233K) References

Survival and growth of the sea cucumber Holothuria leucospilota Brandt: a comparison between suspended and bottom cultures in a subtropical fish farm during summer (pages 114–124) Zonghe Yu, Chaoqun Hu, Yi Zhou, Haipeng Li and Pengfei Peng Abstract Full Article (HTML) PDF(698K) References

Effects of traditional rainbow trout (Oncorhynchus mykiss) breeding on dissolved organic nitrogen pools and microbial activity in the water (pages 125–139) Niels O G Jørgensen and Cecilie Klausen Abstract Full Article (HTML) PDF(501K) References Supporting Information

Importance of broodstock holding temperature on fecundity and egg quality in three groups of photo-manipulated Atlantic cod broodstock (pages 140–150) Øyvind J Hansen, Velmurugu Puvanendran and Atle Mortensen Abstract Full Article (HTML) PDF(364K) References

Short Communications

Replacement of fish meal with fermented soybean meal in practical diets for pompano Trachinotus ovatus (pages 151–156) Heizhao Lin, Xu Chen, Shuisheng Chen, Li Zhuojia, Zhong Huang, Jin Niu, Kaichang Wu and Xin Lu Abstract Full Article (HTML) PDF(168K) References

Chlorella biomass as feed supplement for freshwater fish: sterlet, Acipenser ruthenus (pages 157–159) Magda Sergejevová and Jiří Masojídek Abstract Full Article (HTML) PDF(234K) References

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VOLUME 44, PART 1, JANUARY 2013 Website

Research articles

Maturity stage and plasma testosterone levels are related to sperm production in blue catfish, Ictalurus furcatus. (pages 161–166) Nagaraj G. Chatakondi and Kenneth B. Davis Abstract Full Article (HTML) PDF(205K) References

Decapsulated Artemia cysts of different quality (high or low hatch-rate) as direct food for tench (Tinca tincaL.) larvae (pages 167–175) Jesús D. Celada, Vanesa García, José M. Carral, María Sáez-Royuela, Rocío González and Álvaro González Abstract Full Article (HTML) PDF(178K) References

Fluoride retention after dietary fluoride exposure in Siberian sturgeon Acipenser baerii (pages 176–181) Xiaotao Shi, Ruifang Wang, Ping Zhuang, Longzhen Zhang and Guangpeng Feng Abstract Full Article (HTML) PDF(172K) References

Evaluation of cold-pressed flaxseed oil as an alternative dietary lipid source for juvenile sablefish (Anoplopoma fimbria) (pages 182–199) Erin N. Friesen, Shannon K. Balfry, Brent J. Skura, Michael G. Ikonomou and Dave A. Higgs Abstract Full Article (HTML) PDF(318K) References

Improvement of rotifer Brachionus plicatilis population growth dynamics with inclusion of Bacillus spp. probiotics (pages 200–211) Ian C. Zink, Philippe A. Douillet and Daniel D. Benetti Abstract Full Article (HTML) PDF(358K) References

In vitro comparisons of the inhibitory activity of florfenicol, copper sulphate and potassium permanganate towards Aeromonas hydrophila and Flavobacterium columnare (pages 212–219) Kevin K. Schrader, Marcuslene D. Harries and Ahmed M. Darwish Abstract Full Article (HTML) PDF(263K) References

Genetic diversity and species identification of Argulus parasites collected from major aquaculture regions of India using RAPD-PCR (pages 220–230) Pramoda Kumar Sahoo, Jyotirmaya Mohanty, Sushil Kumar Garnayak, Bikash Ranjan Mohanty, Banya Kar, Joykrushna Jena and Hema Prasanth Abstract Full Article (HTML) PDF(435K) References

Stocking density affects Senegalese sole (Solea senegalensis, Kaup) growth independently of size dispersion, evaluated using an individual photo- identification technique (pages 231–241) Pablo Sánchez, Pedro Pablo Ambrosio and Rosa Flos Abstract Full Article (HTML) PDF(534K) References

A proposal for modelling the thermal-unit growth coefficient and feed conversion ratio as functions of feeding rate for gilthead sea bream (Sparus aurata, L.) in summer conditions (pages 242–253) Ignacio Jauralde, Silvia Martínez-Llorens, Ana Tomás, Rodolfo Ballestrazzi and Miguel Jover

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Abstract Full Article (HTML) PDF(347K) References

Influence of dietary nucleotides supplementation on growth, body composition and fatty acid profile of Beluga sturgeon juveniles (Huso huso) (pages 254–260) Behrooz Abtahi, Morteza Yousefi and Abdolmohammad Abedian Kenari Abstract Full Article (HTML) PDF(177K) References

Effect of ultraviolet (UV) radiation on the abundance and respiration rates of probiotic bacteria (pages 261–267) M. Angélica Garrido-Pereira, André Luiz Braga, Andréa Ferretto da Rocha, Luís André Sampaio and Paulo César Abreu Abstract Full Article (HTML) PDF(199K) References

Dietary methionine requirement of Indian major carp fry, Cirrhinus mrigala (Hamilton) based on growth, feed conversion and nitrogen retention efficiency (pages 268–281) Mukhtar A. Khan and Shabi Fatma Abidi Abstract Full Article (HTML) PDF(500K) References

Apparent digestibility of alternative plant-protein feedstuffs for channel catfish, Ictalurus punctatus (Rafinesque) (pages 282–288) Menghe H Li, Daniel F Oberle and Penelope M Lucas Abstract Full Article (HTML) PDF(166K) References

Heritabilities and correlations of deformities and growth-related traits in the European sea bass (Dicentrarchus labrax, L) in four different sites (pages 289– 299) Bilge Karahan, Béatrice Chatain, Hervé Chavanne, Alain Vergnet, Agnès Bardon, Pierrick Haffray, Mathilde Dupont-Nivet and Marc Vandeputte Abstract Full Article (HTML) PDF(232K) References

Evaluation of poultry fat and blends of poultry fat with cold-pressed flaxseed oil as supplemental dietary lipid sources for juvenile sablefish (Anoplopoma fimbria) (pages 300–316) Erin Friesen, Shannon K Balfry, Brent J Skura, Michael Ikonomou and Dave A Higgs Abstract Full Article (HTML) PDF(381K) References

Short Communications

Comparative study on nutrient composition and growth of green and red sea cucumber, Apostichopus japonicus (Selenka, 1867), under the same culture conditions (pages 317–320) Senhao Jiang, Shuanglin Dong, Qinfeng Gao, Fang Wang and Xiangli Tian Abstract Full Article (HTML) PDF(197K) References

Microbial diversity in the sediment of a crab pond in Nanjing, China (pages 321– 325) Yuchun Liu, Zhigang Zhou, Suxu He, Bin Yao and Einar Ringø Abstract Full Article (HTML) PDF(190K) References

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VOLUME 15, PART 6, DECEMBER 2012 Website

Research articles

Growth and development: eukaryotes Edited by Nicholas J Talbot

Regulating morphogenetic transitions during development and pathogenesis of microbial eukaryotes Nicholas J Talbot Show preview | PDF (181 K) | Related articles | Related reference work articles

Microtubule-based transport in filamentous fungi Martin J Egan, Mark A McClintock, Samara L Reck-Peterson Show preview | PDF (1038 K) | Related articles | Related reference work articles Highlights ► Dynein-driven and kinesin-driven microtubule-based transport is linked to neuropathology. ► Filamentous fungi are valuable models to study transport by dynein and kinesin. ► The diversity of fungal cargos that use microtubule-based transport is expanding. ► Fungal models provide insight into transport initiation at microtubule terminals. ► Knowledge of transport regulation in fungi informs efforts to understand neurological disease.

Programmed cell death in the cellular differentiation of microbial eukaryotes Mark Ramsdale Show preview | PDF (413 K) | Related articles | Related reference work articles Highlights ► Examples of PCD in the development of specialized microbial cells are explored. ► Major pathways associated with microbial PCD are described. ► Evolutionary pressures that initiate and maintain PCD in unicellular microbes are examined. ► The role of PCD in the emergence of antimicrobial drug resistance is discussed.

Reactive oxygen species generation in fungal development and pathogenesis Paul Tudzynski, Jens Heller, Ulrike Siegmund Show preview | PDF (685 K) | Related articles | Related reference work articles Highlights ► Fungal NADPH oxidase (Nox) complexes are involved in central developmental processes. ► The exact composition and recruitment of Nox complexes are still not well understood. ► Recent evidence suggests a role for Nox in the assembly of the actin cytoskeleton. ► Cellular localization studies suggest a (transient?) role for fungal Nox in the ER.

Posttranslational modifications and assembly of septin heteropolymers and higher-order structures Yainitza Hernández-Rodríguez, Michelle Momany Show preview | PDF (626 K) | Related articles | Related reference work articles Highlights ► There are no fungal septin residues that are universally modified and only a few pairs that are identically modified. ► Posttranslational modifications of septins appear to be evolutionarily recent. ► G domain posttranslational modifications cluster near the G interface, where they probably modulate heteropolymer formation. ► N-terminal and C-

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terminal modifications are scattered, where they probably modulate unique higher-order structures.

Genetic control of asexual sporulation in filamentous fungi Hee-Soo Park, Jae-Hyuk Yu Show preview | PDF (1424 K) | Related articles | Related reference work articles Highlights ► Review updates genetic control of conidiation in two model filamentous fungi Aspergillus nidulans and Neurospora crassa. ► The velvet regulators contribute to the fecundity and fitness of fungi by coordinating differentiation and metabolism. ► Light is a key factor influencing the balance between sexual and asexual development and secondary metabolism in fungi.

Genetic control of infection-related development in Magnaporthe oryzae Guotian Li, Xiaoying Zhou, Jin-Rong Xu Show preview | PDF (514 K) | Related articles | Related reference work articles Highlights ► Surface recognition is mediated by cAMP signaling and upstream G-protein signaling. ► Pmk1 regulates appressorium formation, penetration, and invasive growth. ► Cell wall integrity MAPK pathway also is important for penetration and invasive growth. ► Calcium signaling and ROS are involved in infection-related development. ► Significant advances in studies with cytoskeleton organization and effector delivery.

Secretion, delivery and function of oomycete effector proteins Stephan Wawra, Rodrigo Belmonte, Lars Löbach, Marcia Saraiva, Ariane Willems, Pieter van West Show preview | PDF (332 K) | Related articles | Related reference work articles Highlights ► Oomycetes are serious pathogens of plants and animals and cause a tremendous amount of economic losses worldwide. ► Their infection is greatly aided by the secretion of effector proteins. ► These effector proteins can act on the outside (extracellular effectors) or inside (intracellular effectors) the host cell. ► The putative translocation mechanisms of the intracellular effectors are being discussed in detail. ► The function of most intracellular effectors is unknown but in some cases it has been shown that they can manipulate host immune responses.

Roles and delivery mechanisms of fungal effectors during infection development: common threads and new directions Nicole M Donofrio, Vidhyavathi Raman Show preview | PDF (438 K) | Related articles | Related reference work articles Highlights ► We review latest findings in fungal effector biology of plants. ► Delivery of fungal effectors into cells may be by BICs, exosomes, or lipid rafts. ► Fungal effectors target host cell metabolism and basal immunity. ► Fungal proteins that modify or control effectors may play a role in virulence.

Recent insights into the export of PEXEL/HTS-motif containing proteins in Plasmodium parasites Hayley E Bullen, Brendan S Crabb, Paul R Gilson Show preview | PDF (673 K) | Related articles | Related reference work articles Highlights ► The export of parasite proteins is crucial to malaria parasite survival. ► Two sites are important, the endoplasmic reticulum and the parasitophorous vacuole. ► Plasmepsin V operates in the ER to process proteins destined for export. ► A Plasmepsin V complex

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then directs vesicular trafficking. ► Once trafficked to the PV, exported proteins are translocated by the PTEX complex.

Growth and development: prokaryotes Edited by Orna Amster-Choder and Tâm Mignot

Growth and development: prokaryotes Orna Amster-Choder, Tâm Mignot Show preview | PDF (157 K) | Related articles | Related reference work articles

The molecular origins of chiral growth in walled cells Kerwyn Casey Huang, David W. Ehrhardt, Joshua W. Shaevitz Show preview | PDF (3652 K) | Related articles | Related reference work articles Highlights ► Rod-shaped cells provide a model system for studying cell-shape maintenance in walled cells. ► Spatial control of cell-wall synthesis is critical for cell-shape maintenance. ► Protein filaments often have intrinsic chirality. ► Cell curvature can mediate the localization and orientation of protein filaments. ► Wall insertion in a chiral pattern produces rod-shaped cells that twist during growth.

Spatial positioning of cell wall-anchored virulence factors in Gram-positive bacteria Hélène Bierne, Shaynoor Dramsi Show preview | PDF (1292 K) | Related articles | Related reference work articles Highlights ► Cell wall-anchored surface proteins promote pathogenesis in Gram-positive bacteria. ► 3D imaging highlights non-random spatio-temporal distributions of surface virulence factors. ► Listerial sorted proteins shift from helical to polar sites in response to environmental changes. ► Signal peptides in coccal surface proteins direct specific localization patterns. ► Gene expression, wall dynamics and protein sorting compartmentalize the bacterial envelope.

Membrane heterogeneity created by transertion is a global regulator in bacteria Itzhak Fishov, Vic Norris Show preview | PDF (458 K) | Supplementary content | Related articles | Related reference work articles Highlights ► The bacterial membrane is heterogeneous in distribution of lipids and proteins. ► Transertion is of major importance in the spatial organization of the bacterial cell. ► The membrane domains created by transertion are implicated in the activity and distribution of many proteins. ► Transertion is considered as a global regulator, coupling metabolism to the cell cycle.

Finding the corners in a cell Henrik Strahl, Leendert W Hamoen Show preview | PDF (1177 K) | Related articles | Related reference work articles Highlights ► DivIVA is localized at cell division sites and cell poles. ► DivIVA binds to the concave surface of curved membranes. ► Binding of DivIVA to curved membranes is an intrinsic property of the protein. ► A few simple rules can explain binding of proteins to negatively curved membranes. ► Binding of DivIVA to curved membranes was modelled using Monte- Carlo simulations.

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Regulation of apical growth and hyphal branching in Streptomyces Klas Flärdh, David M Richards, Antje M Hempel, Martin Howard, Mark J Buttner Show preview | PDF (760 K) | Related articles | Related reference work articles Highlights ► Apical growth in Streptomyces is directed by a polarisome-like complex involving the essential polarity protein DivIVA. ► New branch sites are marked by a ‘polarisome-splitting’ mechanism. ► DivIVA is subject to phosphorylation by the Ser/Thr kinase AfsK. ► The kinase activity of AfsK is induced when cell wall synthesis at growing tips is blocked. ► The AfsK kinase regulates apical growth and hyphal branching.

Polarity and cell fate asymmetry in Caulobacter crescentus Christos G Tsokos, Michael T Laub Show preview | PDF (711 K) | Related articles | Related reference work articles Highlights ► Replicative asymmetry of Caulobacter daughter cells is dictated by CtrA. ► Two phosphorelays drive the phosphorylation and proteolytic stabilization of CtrA. ► CckA, the kinase for CtrA, must localize to a cell pole for maximal activation. ► CckA colocalizes with the phosphatase PleC to avoid downregulation by DivK∼P. ► Localization of DivJ and PleC to opposite poles helps establish replicative asymmetry.

Chemosensory signaling controls motility and subcellular polarity in Myxococcus xanthus Christine Kaimer, James E Berleman, David R Zusman Show preview | PDF (952 K) | Related articles | Related reference work articles Highlights ► Dynamic localization of motility organelles in M. xanthus is regulated by Frz signaling. ► Cell polarity requires the Ras-like GTPase and GAP proteins MglA and MglB. ► Coordinated secretion of EPS and pilin is required for social motility. ► Recent studies reveal that gliding motility is powered by distributed motor complexes.

Single-molecule super-resolution imaging in bacteria DI Cattoni, JB Fiche, M Nöllmann Show preview | PDF (773 K) | Related articles | Related reference work articles Highlights ► Single-molecule super-resolution imaging methods (PALM, STORM, PAINT). ► Imaging bacterial ultrastructures by single-molecule super-resolution microscopy. ► Super- resolution imaging: advantages, limitations and perspectives.

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VOLUME 102, PART 1, DECEMBER 2012 Website

Research articles

Yasuda N, Hidaka M Cellular kinetics in growth anomalies of the scleractinian corals Porites australiensis and Montipora informis | Full text in pdf format

Wu XG, Xiong HT, Wang YZ, Du HH Evidence for cell apoptosis suppressing white spot syndrome virus replication in Procambarus clarkii at high temperature | Full text in pdf format

Bang Jensen B, Kristoffersen AB, Myr C, Brun E Cohort study of effect of vaccination on pancreas disease in Norwegian salmon aquaculture | Full text in pdf format

Yu LP, Hu YH, Sun BG, Sun L C312M: an attenuated Vibrio anguillarum strain that induces immunoprotection as an oral and immersion vaccine DAO 102:33-42 | Full text in pdf format

Tsai MA, Wang PC, Liaw LL, Yoshida T, Chen SC Comparison of genetic characteristics and pathogenicity of Lactococcus garvieae | Full text in pdf format

Jones PG, Hammell KL, Dohoo IR, Revie CW Effectiveness of emamectin benzoate for treatment of Lepeophtheirus salmonis on farmed Atlantic salmon Salmo salar in the Bay of Fundy, Canada| Full text in pdf format

Elston RA, Moore J, Abbott CL Denman Island disease (causative agent Mikrocytos mackini) in a new host, Kumamoto oysters Crassostrea sikamea | Full text in pdf format

Meegan J, Dunn JL, Venn-Watson SK, Smith CR, Sidor I, Jensen ED, Van Bonn WG, Pugh R, Ficht T, Adams LG, Nielsen K, Romano TA Serologic response in bottlenose dolphins Tursiops truncatus infected with Brucella sp. using a dolphin-specific indirect ELISA | Full text in pdf format

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VOLUME 102, PART 2, DECEMBER 2012 Website

Research articles

Daněk T, Kalous L, Veselý T, Krásová E, Reschová S, Rylková K, Kulich P, Petrtýl M, Aquaculture Journals Page: 73 of 167

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Pokorová D, Knytl M Massive mortality of Prussian carp Carassius gibelio in the upper Elbe basin associated with herpesviral hematopoietic necrosis (CyHV-2) | Full text in pdf format

Fetherman ER, Winkelman DL, Schisler GJ, Antolin MF Genetic basis of differences in myxospore count between whirling disease- resistant and -susceptible strains of rainbow trout | Full text in pdf format

Wilbur AE, Ford SE, Gauthier JD, Gomez-Chiarri M Quantitative PCR assay to determine prevalence and intensity of MSX (Haplosporidium nelsoni) in North Carolina and Rhode Island oysters Crassostrea virginica DAO 102:107-118 | Full text in pdf format

Soares F, Leitão A, Moreira M, de Sousa JT, Almeida AC, Barata M, Feist SW, Pousão- Ferreira P, Ribeiro L Sarcoma in the thymus of juvenile meagre Argyrosomus regius reared in an intensive system | Full text in pdf format

Makkonen J, Jussila J, Kortet R, Vainikka A, Kokko H Differing virulence of Aphanomyces astaci isolates and elevated resistance of noble crayfish Astacus astacus against crayfish plague DAO 102:129-136 | Full text in pdf format

Cervino JM, Hauff B, Haslun JA, Winiarski-Cervino K, Cavazos M, Lawther P, Wier AM, Hughen K, Strychar KB Ulcerated yellow spot syndrome: implications of aquaculture-related pathogens associated with soft coral Sarcophyton ehrenbergi tissue lesions | Full text in pdf format

La Sala LF, Pozzi LM, McAloose D, Kaplan FS, Shore EM, Kompanje EJO, Sidor IF, Musmeci L, Uhart MM Severe soft tissue ossification in a southern right whale Eubalaena australis | Full text in pdf format

Notes

Garseth ÅH, Biering E, Tengs T Piscine myocarditis virus (PMCV) in wild Atlantic salmon Salmo salar | Full text in pdf format

Jones MEB, Armién AG, Rothermel BB, Pessier AP Granulomatous myositis associated with a novel alveolate pathogen in an adult southern leopard frog (Lithobates sphenocephalus) | Full text in pdf format

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VOLUME 34, PART 1, JANUARY 2013 Website

Research articles

Regular Papers

Structural and functional characterization of CATH_BRALE, the defense molecule in the ancient salmonoid, Brachymystax lenok Zheng Li, Songyan Zhang, Jiuxiang Gao, Huijuan Guang, Yuanyong Tian, Zongmao Zhao, Yipeng Wang, Haining Yu Show preview | PDF (1673 K) | Related articles | Related reference work articles Highlights ► The cathelicidin (CATH_BRALE) was identified in ancient fish, Brachymystax lenok. ► The distinctive structure features were analyzed: high level of Ser& Gly; and tandem repeat of RPGGGS. ► The 3D structure of CATH_BRALE exhibits antiparallel β-sheets flanked by α- helices. ► CATH_BRALE possesses potent antimicrobial activity against fish pathogens with MICs of 9.38 μM.

Interacting effects of water temperature and dietary protein level on hematological parameters in Nile tilapia juveniles, Oreochromis niloticus (L.) and mortality under Streptococcus iniae infection Jun Qiang, Hong Yang, Hui Wang, Mathew D. Kpundeh, Pao Xu Show preview | PDF (362 K) | Related articles | Related reference work articles Highlights ► The linear and quadratic effects of temperature on RBC, WBC and Hb were highly significant. ► The linear and quadratic effects of protein level on RBC, WBC and Hb were insignificant. ► The interacting effects of temperature and dietary protein on RBC and Hb were significant. ► The combination of the lowest mortality was very similar to the combination for the greatest levels of RBC, WBC and Hb. ► Preferred temperature/dietary protein level combination might strengthen the non-specific immunity.

A manganese superoxide dismutase with potent antioxidant activity identified from Oplegnathus fasciatus: Genomic structure and transcriptional characterization Navaneethaiyer Umasuthan, Kasthuri Saranya Revathy, S.D.N.K. Bathige, Bong-Soo Lim, Myoung-Ae Park, Ilson Whang, Jehee Lee Show preview | PDF (2899 K) | Related articles | Related reference work articles Graphical abstract

Highlights

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► Rock bream MnSOD (Of-mMnSOD) was identified and revealed all the MnSOD-family features. ► Genome organization (5 exons/4 introns) and promoter region of Of-mMnSOD were determined. ► Its mRNA was omnipresent in 11 tissues with higher levels in blood cells and metabolic tissues. ► Of-mMnSOD transcription was kinetically modulated by LPS, poly I:C, Edwardsiella tarda and irido virus. ► Recombinant Of-mMnSOD had antioxidant activity with optimum -pH 9 and -temperature at 20 °C.

Hemocytic immune responses triggered by CpG ODNs in shrimp Litopenaeus vannamei Rui Sun, Limei Qiu, Feng Yue, Lingling Wang, Rui Liu, Zhi Zhou, Huan Zhang, Linsheng Song Show preview | PDF (662 K) | Related articles | Related reference work articles Highlights ► pUC57-CpG induced apoptosis of hemocytes and decreased THC. ► Circulating hemocytes regenerated in response to pUC57-CpG. ► Phagocytic activity and ROS were enhanced by pUC57-CpG treatment. ► A promising application of CpG in shrimp farming.

Characterization of a c-type lysozyme of Scophthalmus maximus: Expression, activity, and antibacterial effect Lan-ping Yu, Bo-guang Sun, Jun Li, Li Sun Show preview | PDF (1621 K) | Supplementary content | Related articles | Related reference work articles Highlights ► SmLysC, a turbot c-type lysozyme, was expressed in major tissues and induced by bacterial infection. ► SmLysC was detected in the extracellular milieu of cultured hepatocytes. ► rSmLysC was able to bind to bacterial cells and inhibit bacterial growth. ► The optimum temperature and pH of rSmLysC were 37 °C and pH 6.0. ► Mutation of the conserved catalytic residues E50 and D67 abolished the activity of SmLysC.

Modulation of innate immune responses in Atlantic salmon by chronic hypoxia- induced stress Bjørn Olav Kvamme, Koestan Gadan, Frode Finne-Fridell, Lars Niklasson, Henrik Sundh, Kristina Sundell, Geir Lasse Taranger, Øystein Evensen Show preview | PDF (757 K) | Related articles | Related reference work articles Highlights ► Chronic hypoxia induces tertiary stress effects not reflected in cortisol levels. ► Immune stimuli induce high cortisol levels not found in sham injected fish. ► Chronic hypoxia reduces/delays expression of macrophage immune signalling genes. ► Chronic hypoxia modulates expression of head kidney and intestine immune genes. ► A history of chronic hypoxia appears to negatively affect the fish immune response.

Effects of dietary live yeast Hanseniaspora opuntiae C21 on the immune and disease resistance against Vibrio splendidus infection in juvenile sea cucumber Apostichopus japonicus Yuexin Ma, Zhiming Liu, Zhiping Yang, Ming Li, Jiao Liu, Jian Song Show preview | PDF (872 K) | Related articles | Related reference work articles Highlights ► C21 inhibited the growth of the pathogenic Shewanella marisflavi AP629 and Vibrio splendidus NB13 of sea cucumber. ► C21 significantly improved the phagocytic activity in coelomocytes of sea cucumbers. ► C21 significantly enhanced LSZ, PO, T-NOS, SOD, AKP and ACP activities in coelomic fluid sea cucumbers. ► C21 significantly increased LSZ, T- NOS, AKP and ACP activities in coelomocytes cells lysate supernatant (CLS) of sea cucumbers. ► C21 significantly enhanced salinity stress tolerance and disease resistance of sea cucumber.

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Identification of Omp38 by immunoproteomic analysis and evaluation as a potential vaccine antigen against Aeromonas hydrophila in Chinese breams Na Wang, Zhao Yang, Mingfa Zang, Yongjie Liu, Chengping Lu Show preview | PDF (615 K) | Related articles | Related reference work articles Highlights ► Seven immunogenic proteins of Aeromonas hydrophila were found by immunoproteomics. ► Outer membrane protein Omp38 was identified and evaluated for immunogenic potential. ► Chinese breams immunized with recombinant Omp38 protein produced specific antibodies. ► Recombinant Omp38 effectively stimulated non-specific immune responses. ► Recombinant Omp38 protected Chinese breams against A. hydrophila J-1 challenge.

Characterization of complement 1q binding protein of tiger shrimp, Penaeus monodon, and its C1q binding activity Lishi Yang, Xianjun Liu, Wenjing Liu, Xiaolan Li, Lihua Qiu, Jianhua Huang, Shigui Jiang Show preview | PDF (1781 K) | Supplementary content | Related articles | Related reference work articles Highlights ► We isolated, cloned and sequenced a full-length C1qBP from the tiger shrimp, Penaeus monodon. ► The PmC1qBP transcript was up-regulated by Vibrio alginolyticus in vivo. ► PmC1qBP protein express in the specific tissue. ► The native PmC1qBP consist of a 38kD precursor and a 35kD mature peptide. ► The recombinant C1qBP competitively binds to mouse C1q to activate complement activity.

The role of catalase in the immune response to oxidative stress and pathogen challenge in the clam Meretrix meretrix Chao Wang, Xin Yue, Xia Lu, Baozhong Liu Show preview | PDF (1918 K) | Related articles | Related reference work articles Highlights ► A catalase gene was characterized from the clam Meretrix meretrix. ► The mRNA and protein expression were increased by H2O2 challenge. ► Pathogen infection could significantly up-regulate the MmeCAT expression. ► Vibrio-resistant clam population had a higher MmeCAT expression than control population.

The immunomodulation of inducible nitric oxide in scallop Chlamys farreri Qiufen Jiang, Zhi Zhou, Lingling Wang, Xiaowei Shi, Jingjing Wang, Feng Yue, Qilin Yi, Chuanyan Yang, Linsheng Song Show preview | PDF (924 K) | Related articles | Related reference work articles Highlights ► Inducible NO suppresses the apoptosis of scallop haemocytes. ► Inducible NO enhances the phagocytic ability of scallop haemocytes. ► Inducible NO involves the regulation of redox, and maintains the oxidation level. ► Inducible NO displayed cytoprotective effects by enhancing bactericidal ability.

Crustin, a WAP domain containing antimicrobial peptide from freshwater prawn Macrobrachium rosenbergii: Immune characterization Jesu Arockiaraj, Annie J. Gnanam, Dhanaraj Muthukrishnan, Ranganath Gudimella, James Milton, Arun Singh, Saravanan Muthupandian, Marimuthu Kasi, Subha Bhassu Show preview | PDF (1080 K) | Related articles | Related reference work articles Highlights ► Antimicrobial peptide crustin (MrCrs) sequenced from Macrobrachium rosenbergii. ► MrCrs immune characters have been reported. ► MrCrs amino acid contains a WAP domain at N-terminus. ► Gene expression was stimulated with IHHNV, WSSV, Aeromonas hydrophila and Enterococcus faecium. ► Recombinant MrCrs proteins have the capability to kill bacteria. Aquaculture Journals Page: 77 of 167

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Characterization and comprehensive analysis of the miiuy croaker TLR2 reveals a direct evidence for intron insert and loss Tianjun Xu, Fanxing Meng, Zhihuang Zhu, Rixin Wang Show preview | PDF (1491 K) | Related articles | Related reference work articles Highlights ► Genomic structure of miiuy croaker TLR2 gene was obtained. ► It has one more exon and intron comparing to fugu and pufferfish, showing direct evidence for intron insertion on fish TLR2. ► High levels of TLR2 were detected in organs in direct contact with the environment. ► TLR2 genes are under strong purifying selection pressure in both of fish and mammals.

Cloning and characterization of the SpLRR cDNA from green mud crab, Scylla paramamosain Jingsong Cao, Zhongyang Lin, Yueling Zhang, Xiaoyu Zhang, Shengkang Li, Nan Zhang, Wenhui Zou, Yuanyou Li, Jiehui Chen, Xiuying Wang Show preview | PDF (1572 K) | Related articles | Related reference work articles Highlights ► We found for the first time a novel LRR homolog (SpLRR) in crab. ► It displayed a characteristic structure of the LRR family. ► The SpLRR might be involved in crab resistance to pathogenic infection.

Direct antibacterial activity of CD8+/CD4+ T-cells in ginbuna crucian carp, Carassius auratus langsdorfii Sukanta K. Nayak, Teruyuki Nakanishi Show preview | PDF (848 K) | Supplementary content | Related articles | Related reference work articles Highlights ► Sensitized CD8α+ and CD4+ T cells showed direct antibacterial activity in ginbuna. ► CD8α+ T cells killed more than 90% of Lactococcus garvieae and Edwardsiella tarda. ► Sensitized CD8α+ T cells showed approx. 40% of non-specific killing activity. ► Sensitized surface IgM+ cells as well as T cells killed both types of pathogens.

Characterisation of immune-related gene expression in clam (Venerupis philippinarum) under exposure to di(2-ethylhexyl) phthalate Yali Lu, Peng Zhang, Chenghua Li, Xiurong Su, Chunhua Jin, Ye Li, Yongjian Xu, Taiwu Li Show preview | PDF (549 K) | Related articles | Related reference work articles Highlights ► The spatial variation in the expression of immune-related genes in clam under acute DEHP exposure were assessed by qPCR. ► Six genes displayed tightly dose-dependent manners towards DEHP challenge. ► Negative correlation expression profiles were observed in BD, GST and TP. ► These findings improve our current understanding of the link between clam innate immunity and DEHP exposure.

Identification and expression analysis of two Toll-like receptor genes from sea cucumber (Apostichopus japonicus) Hongjuan Sun, Zunchun Zhou, Ying Dong, Aifu Yang, Bei Jiang, Shan Gao, Zhong Chen, Xiaoyan Guan, Bai Wang, Xiuli Wang Show preview | PDF (3352 K) | Related articles | Related reference work articles Highlights ► Two TLRs named AjTLR3 and AjToll were cloned from Apostichopus japonicus. ► AjTLR3 and AjToll were widely expressed in five tested tissues of A. japonicus. ► The two TLRs were significantly induced by PGN, LPS, Zymosan A and PolyI:C. ► We report the isolation, characterization and expression analysis of the two TLRs.

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Truncated VP28 as oral vaccine candidate against WSSV infection in shrimp: An uptake and processing study in the midgut of Penaeus monodon A. Kulkarni, J.H.W.M. Rombout, I.S.B. Singh, N.S. Sudheer, J.M. Vlak, C.M.A. Caipang, M.F. Brinchmann, V. Kiron Show preview | PDF (1491 K) | Related articles | Related reference work articles Highlights ► Uptake of WSSV-vaccines and live virus in the gut of Penaeus monodon is described. ► Midgut is the prominent site for their uptake and processing. ► Through receptor-mediated endocytosis antigens enter the enterocytes when VP28 is recognized. ► Antigen processing occurs in endo-lysosomal compartments; but escaping antigens enter the inter-cellular space. ► Activated haemocytes demonstrate immune response to antigens accumulating in gut connective tissue.

A novel effect of imidazole derivative KK-42 on increasing survival of Aeromonas hydrophila challenged prawn Macrobrachium nipponense Wen-Feng Wang, Hong Yang, Fang Liu, Xiang-Li Chen, Yan-Jie Lv, Qian-Ji Ning Show preview | PDF (1007 K) | Related articles | Related reference work articles Highlights ► Pretreatment of KK-42 can increase the survival rate of M. nipponense. ► We first cloned the MnproPO gene from M. nipponense and characterized it. ► MnproPO expression and PO activity may be induced by KK-42. ► KK-42 administration can activate M. nipponense proPO system.

Immune gene discovery by expressed sequence tag (EST) analysis of hemocytes in the ridgetail white prawn Exopalaemon carinicauda Yafei Duan, Ping Liu, Jitao Li, Jian Li, Ping Chen Show preview | PDF (809 K) | Related articles | Related reference work articles Open Access Article Highlights ► The ridgetail white prawn Exopalaemon carinicauda. ► Expressed sequence tag (EST) library of hemocytes in E. carinicauda. ► Discovery of immune-related genes.

Feeding truncated heat shock protein 70s protect Artemia franciscana against virulent Vibrio campbellii challenge Kartik Baruah, Parisa Norouzitallab, Li Shihao, Patrick Sorgeloos, Peter Bossier Show preview | PDF (648 K) | Related articles | Related reference work articles Highlights ► The prokaryotic (DnaK) and eukaryotic (Artemia) Hsp70s are highly conserved. ► These Hsp70s consist of 3 distinct domains: ATPase, peptide-binding (PBD) and lid. ► The amino acid sequence of these proteins is highly homologous, mainly in the PBD. ► We showed that truncated Hsp70s containing the PBD protected Artemia against Vibrio. ► The protective epitope within Hsp70s might be located within this conserved PBD.

Heterogeneous interactome between Litopenaeus vannamei plasma proteins and Vibrio parahaemolyticus outer membrane proteins Xiang Liu, Xin-Tao She, Qing-Feng Zhu, Hui Li, Xuan-Xian Peng Show preview | PDF (767 K) | Related articles | Related reference work articles Graphical abstract

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Highlights ► Bacterial pull-down to isolate the shrimp serum proteins that interact with bacterial cells. ► Shrimp serum proteins recognized bacterial outer membrane (OM) protein in OM array. ► Shrimp proteins and OM proteins form sixty-three heterogeneous protein–protein interactions. ► Nine out of the thirty OM proteins were randomly demonstrated to be up- regulated or down-regulated. ► Our results uncover the complexity of struggle between host immunity and bacterial infection.

Establishing a cell line from Atlantic cod as a novel tool for in vitro studies I. Jensen, K. Steiro, A.-I. Sommer, S. Mennen, A. Johansen, E.K. Sandaker, M. Seppola Show preview | PDF (740 K) | Related articles | Related reference work articles Highlights ► An epithelial-like cell line was developed from Atlantic cod larvae (ACL) cells. ► At present, the ACL cell line has been subcultured for more than 100 passages. ► ACL cells proliferated in a wide temperature range with optimal growth at 15 °C. ► ACL cells recognised synthetic dsRNA by inducing expression of cod immune genes. ► Infection with two viruses (IPNV and NNV) caused different outcomes.

Shrimp Dscam and its cytoplasmic tail splicing activator serine/arginine (SR)- rich protein B52 were both induced after white spot syndrome virus challenge Yi-An Chiang, Hsin-Yi Hung, Chung-Wei Lee, Yun-Tzu Huang, Han-Ching Wang Show preview | PDF (679 K) | Supplementary content | Related articles | Related reference work articles Highlights ► The serine/arginine (SR)-rich protein B52 gene from Litopenaeus vannamei (LvB52) was isolated and characterized. ► After WSSV infection, a parallel increase in the expression of total LvDscam and LvB52 was observed. ► In vivo dsRNA silencing of LvB52 induced element 3 exclusion in the LvDscam cytoplasmic tail. ► LvB52 silencing was associated with a decrease in the variability of the Ig7 region. ► LvB52 acts as a splicing activator that regulates alternative splicing events in LvDscam.

Effect of Sophora flavescens on non-specific immune response of tilapia (GIFT Oreochromis niloticus) and disease resistance against Streptococcus agalactiae Ying-rui Wu, Qing-fang Gong, Hong Fang, Wan-wen Liang, Ming Chen, Rui-jie He Show preview | PDF (342 K) | Related articles | Related reference work articles Highlights ► Tilapia fed with S. flavescens enhanced of immunological activities. ► Diet at 0.100% level gave the Tilapia protection with a percentage mortality of 21.1% and RPS value of 73.3%. ► S. flavescens stimulates the immunity and makes tilapia more resistant to Streptococcus agalactiae infection.

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The VP37-binding protein F1ATP synthase β subunit involved in WSSV infection in shrimp Litopenaeus vannamei Wenbin Zhan, Xiaolu Wang, Yanyan Chi, Xiaoqian Tang Show preview | PDF (1210 K) | Related articles | Related reference work articles Highlights ► The binding interaction between VP37 and F1ATP synthase β subunit was identified. ► Monoclonal antibodies (MAbs) against F1ATPase β were produced and characterized. ► Anti-F1ATPase β Mabs could partially block the binding of WSSV to GMPs in vitro. ► Anti- F1ATPase β Mabs could partially block WSSV infection in vivo.

Biodegradable microparticles covalently linked to surface antigens of the scuticociliate parasite P. dicentrarchi promote innate immune responses in vitro L. León-Rodríguez, A. Luzardo-Álvarez, J. Blanco-Méndez, J. Lamas, J. Leiro Show preview | PDF (427 K) | Related articles | Related reference work articles Highlights ► Adjuvant capacity of microspheres (MS) coupled to surface antigens (Ag) of P. dicentrarchi was investigated. ► Phagocytic activity and ROS production was greatly enhanced by using MS–Ag. ► MS–Ag induces production of the immunomodulatory cytokine TNFα. ► MS shows a high adjuvant capacity able of stimulating the innate immune response in vitro.

A comparative analyses of morphological variations, phagocytosis and generation of cytotoxic agents in flow cytometrically isolated hemocytes of Indian molluscs Mitali Ray, Niladri Sekhar Bhunia, Anindya Sundar Bhunia, Sajal Ray Show preview | PDF (940 K) | Related articles | Related reference work articles Highlights ► Agranulocytes, semigranulocytes and granulocytes are hemocyte morphotypes with eight − subpopulations. ► Granulocytes (P4) are the chief phagocytes and main producers of O2 . − ► NO and PO are agranulocytic (P2) in origin in three species. ► O2 in Bellamya bengalensis and NO in Pila globosa and Lamellidens marginalis are major cytotoxic agents. ► PO is prevalent in B. bengalensis and L. marginalis as cytotoxic agent.

Azadirachta indica (neem) leaf dietary effects on the immunity response and disease resistance of Asian seabass, Lates calcarifer challenged with Vibrio harveyi Allah Dad Talpur, Mhd Ikhwanuddin Show preview | PDF (952 K) | Related articles | Related reference work articles Highlights ► Neem leaf-supplemented diet increased weight gain, growth and feed conversion ratio. ► Fish exhibited resistance against challenged Vibrio harveyi. ► Improved immunity of fish was evident. ► Blood parameters and blood indices were affected by neem diet.

Evidence for pituitary adenylate cyclase-activating peptide as a direct immunoregulator in teleost head kidney Xinyan Wang, He Wei, Taiqiang Zhao, Xiaojing Zhu, Xiao Yang, Danyan Chen, Hong Zhou Show preview | PDF (341 K) | Related articles | Related reference work articles Highlights ► PACAP-specific receptor PAC1-R is expressed in grass carp head kidney and spleen. ► PACAP inhibits basal and attenuates LPS-stimulated head kidney leucocyte viability. ► PACAP enhances IL-1β and TNF-α transcripts in head kidney in vitro and in vivo. ► PACAP has no effect on IL-10 mRNA levels in head kidney and head kidney leucocytes. ► No addictive effect of PACAP on LPS or bacteria-induced mRNA levels of the cytokines.

Expression and functional characterization of a gene associated with retinoid- interferon-induced mortality 19 (GRIM-19) from orange-spotted grouper (Epinephelus coioides) Aquaculture Journals Page: 81 of 167

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Yan Shi, Zhe Zhao, Xinping Zhu, Kunci Chen, Qiya Zhang Show preview | PDF (724 K) | Related articles | Related reference work articles Highlights ► The subcellular localization and function of fish GRIM-19 were analyzed for the first time. ► EcGRIM-19 exhibits similar expression and localization pattern to human. ► Amino acids 30–50 are the functional fragment for the mitochondrial localization. ► Overexpression of EcGRIM-19 enhance cellular sensitivity to IFN/RA-induced death in HeLa cells.

Fucoidan effectively provokes the innate immunity of white shrimp Litopenaeus vannamei and its resistance against experimental Vibrio alginolyticus infection Suwaree Kitikiew, Jiann-Chu Chen, Dedi Fazriansyah Putra, Yong-Chin Lin, Su-Tuen Yeh, Chyng-Hwa Liou Show preview | PDF (1659 K) | Related articles | Related reference work articles Highlights ► Fucoidan induced degranulation, caused haemocyte size change, increased activation of proPO. ► Shrimp received fucoidan showed haemocyte proliferation and higher mitotic index of HPT. ► Immune parameters of shrimp that fed fucoidan-containing diet at 1.0 g kg−1 increased. ► PA and CE to Vibrio increased in shrimp that fed fuoidan-containing diet at 1.0 g kg−1. ► Fucoidan provokes innate immunity of shrimp, and could be added for dietary administration.

Identification and immunogenicity of immunodominant mimotopes of outer membrane protein U (OmpU) of Vibrio mimicus from phage display peptide library Junyu Cen, Xueqin Liu, Jinnian Li, Ming Zhang, Wei Wang Show preview | PDF (406 K) | Related articles | Related reference work articles Highlights ► Polyclonal antibody against OmpU protein of Vibrio mimicus was prepared and purified. ► Seven mimotopes of OmpU protein were identified by screening a random 12-peptide library. ► Mimotopes could induce specific antibody response and provide protection against V. mimicus in fish at varying depths. ► These mimotopes presented by phage clone C17, C24, C60 and C66 are immunodominant and protective epitopes of OmpU protein.

Molecular cloning, characterization of one key molecule of teleost innate immunity from orange-spotted grouper (Epinephelus coioides): Serum amyloid A Jingguang Wei, Minglan Guo, Huasong Ji, Qiwei Qin Show preview | PDF (1996 K) | Related articles | Related reference work articles Highlights ► A SAA homologous (EcSAA) gene was firstly cloned from marine fish of orange-spotted grouper, Epinephelus coioides. ► The recombinant protein of EcSAA was demonstrated to bind to all tested bacteria and yeast. ► Overexpression of EcSAA in grouper spleen (GS) cells could inhibit the replication of Singapore grouper iridovirus (SGIV).

Intestinal barrier of carp (Cyprinus carpio L.) during a cyprinid herpesvirus 3- infection: Molecular identification and regulation of the mRNA expression of claudin encoding genes Hamdan Syakuri, Mikołaj Adamek, Graham Brogden, Krzysztof Ł. Rakus, Marek Matras, Ilgiz Irnazarow, Dieter Steinhagen Show preview | PDF (798 K) | Supplementary content | Related articles | Related reference work articles Highlights ► Sequences and tissue expression of eight claudin encoding genes were described. ► Distribution of claudins transcripts along gut reflect functional differences. ► Up-regulation of claudin expression under CyHV-3 reflects response to inflammation.

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Immune responses and gene expression in hepatopancreas from Macrobrachium rosenbergii challenged by a novel pathogen spiroplasma MR-1008 Jie Du, Huanxi Zhu, Peng Liu, Jing Chen, Yunji Xiu, Wei Yao, Ting Wu, Qian Ren, Qingguo Meng, Wei Gu, Wen Wang Show preview | PDF (921 K) | Related articles | Related reference work articles Highlights ► Macrobrachium rosenbergii induced in vivo by spiroplasma MR-1008. ► HE staining showed the hepatopancreas connective and epithelial tissue lesions. ► Changes in AKP, ACP, CAT, SOD activity were detected in hepatopancreas. ► Seven immune related genes were induced by spiroplasma MR-1008 in hepatopancreas. ► Hepatopancreas also play a key role in defensing the pathogen spiroplasma.

Effects of dietary cholesterol on antioxidant capacity, non-specific immune response, and resistance to Aeromonas hydrophila in rainbow trout (Oncorhynchus mykiss) fed soybean meal-based diets Junming Deng, Bin Kang, Linli Tao, Hua Rong, Xi Zhang Show preview | PDF (312 K) | Related articles | Related reference work articles Highlights ► This study evaluated the effects of dietary cholesterol in rainbow trout. ► Cholesterol supplementation generally increased antioxidant capacity. ► Cholesterol supplementation generally increased non-specific immune response. ► Cholesterol supplementation generally increased disease resistance of trout. ► Cholesterol may be under-supplied in rainbow trout fed soybean meal-based diets.

Antigenic and immunogenic properties of truncated VP28 protein of white spot syndrome virus in Procambarus clarkii Hua-Hua Du, Chong-Lin Hou, Xiao-Guo Wu, Rong-hui Xie, Yi-Zhen Wang Show preview | PDF (756 K) | Related articles | Related reference work articles Highlights ► We expressed three truncated VP28 in E. coli and developed polyclonal antibodies. ► We compared neutralization activities in vivo of antibodies against truncated VP28. ► We determined their immunogenicity by vaccinating crayfish before challenge with WSSV. ► N- terminal (1–27aa) and middle (35–95aa) of VP28 were two linear epitopes of VP28.

In vivo effects of Escherichia coli lipopolysaccharide on regulation of immune response and protein expression in striped catfish (Pangasianodon hypophthalmus) Bui Thi Bich Hang, Sylvain Milla, Virginie Gillardin, Nguyen Thanh Phuong, Patrick Kestemont Show preview | PDF (467 K) | Related articles | Related reference work articles Highlights ► White blood cells of striped catfish were stimulated by lipopolysacharide. ► Lipopolysaccharide enhanced some innate immune response in fish. ► Lipopolysaccharide treatments induced over-expressed immune protein. ► Low dose of LPS showed the highest immune responses. ► Fish was protected from Edwardsiella ictaluri by lipopolysaccharide.

Oral vaccination of BacFish-vp6 against grass carp reovirus evoking antibody response in grass carp Renyu Xue, Lin Liu, Guangli Cao, Shiying Xu, Jinghui Li, Yong Zou, Hui Chen, Chengliang Gong Show preview | PDF (798 K) | Related articles | Related reference work articles Highlights ► GCRV vp6 was cloned and expressed by baculovirus expression system in silkworm. ► The freeze-dried powder infected with BacFish-vp6 could induce specific antibody after

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orally administrated in grass carp. ► The powder may possess simultaneously the roles of subunit vaccine and DNA vaccine.

Short Communications

Cloning, characterization and expression of tyrosinase-like gene in amphioxus Branchiostoma japonicum Qiuxiang Pang, Xuemei Liu, Huanhuan Sun, Shicui Zhang, Xinhua Song, XiuFang Zhang, Meng Zhang, Yun Bai, Lili Gao, Bosheng Zhao Show preview | PDF (2493 K) | Related articles | Related reference work articles Highlights ► We cloned and characterized tyrosinase-like gene AmphiTYR from amphioxus. ► AmphiTYR mRNA was expressed in the muscle, epidermis, notochord, ovary, hepatic caecum, pharynx and gill. ► AmphiTYR gene expressed during all the amphioxus development.

Expression of allograft inflammatory factor-1 (AIF-1) in response to bacterial challenge and tissue injury in the pearl oyster, Pinctada martensii Jun Li, Jinhui Chen, Yang Zhang, Ziniu Yu Show preview | PDF (875 K) | Related articles | Related reference work articles Highlights ► A P. martensii AIF-1 cDNA was identified which is 946 bp in size with a 450 bp ORF. ► The qPCR revealed its up-regulation under bacterial challenge and tissue injury. ► The expression of PmAIF-1 is inducible under challenge situations mentioned above.

Expression of immune-related genes in goldfish gills induced by Dactylogyrus intermedius infections Cheng Lu, Fei Ling, Jie Ji, Yu-Jun Kang, Gao-Xue Wang Show preview | PDF (460 K) | Related articles | Related reference work articles Highlights ► We first report the cytokine gene expression in relation to Dactylogyrus infections in fish. ► We confirmed goldfish gill acts as an important source of inflammatory molecules. ► We confirmed goldfish gill acts as active modulator of local inflammation after initially infected with Dactylogyrus.

First molecular cloning and gene expression analysis of a teleost CD200 (OX-2) glycoprotein from rock bream, Oplegnathus fasciatus Seong Don Hwang, Ju-Won Kim, Mu-Chan Kim, Do-Hyung Kim, Chan-Il Park Show preview | PDF (375 K) | Related articles | Related reference work articles Highlights ► RbCD200 consisted of two extracellular Ig-like domains and a transmembrane domain. ► RbCD200 was highly expressed in the brain, erythrocytes, intestine and stomach of healthy rock bream. ► RbCD200 gene expression decreased in the spleen then increased after Edwardsiella tarda, Streptococcus iniae or RSIV infection. ► The RbCD200 gene was greatly induced in the whole kidney following RSIV infection. ► This is the first report of molecular level characterization of CD200 in fish.

Effect of lipopolysaccharides from Vibrio alginolyticus on the Mx gene expression and virus recovery from gilthead sea bream (Sparus aurata L.) experimentally infected with Nodavirus J. Bravo, F. Real, D. Padilla, J.G. Olveira, V. Grasso, L. Román, F. Acosta Show preview | PDF (234 K) | Related articles | Related reference work articles Highlights ► Gilthead sea bream may be susceptible only to certain betanodavirus genotypes. ► Gilthead sea bream can be a transmitter of the Nodavirus disease to the sea bass or other Aquaculture Journals Page: 84 of 167

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susceptible species. ► The immunostimulant LPS of Vibrio alginolyticus has the ability to decreased the virus titration of Nodavirus. ► Nodavirus strongly induces Mx gene expression.

Response to vaccination of Atlantic cod (Gadus morhua L.) progenies from families with different estimated family breeding values for vibriosis resistance Helene Mikkelsen, Marit Seppola Show preview | PDF (361 K) | Related articles | Related reference work articles Highlights ► Progenies of cod families with different estimated vibriosis resistance had high response to vaccination. ► No correlation between vibriosis resistance and response to vaccination. ► Gene expression of IL-1β, IL-10, IL-12p40 and Hep was weakly up-regulated post vaccination. ► No up-regulation of gene encoding IFNγ, IL-8, Cath, LBP/BPI and G-lys in the tested families post vaccination.

Identification of novel interleukin 1 beta family genes in Japanese flounder Paralichthys olivaceus Apichaya Taechavasonyoo, Hidehiro Kondo, Reiko Nozaki, Yutaka Suzuki, Ikuo Hirono Show preview | PDF (225 K) | Supplementary content | Related articles | Related reference work articles Highlights ► Cloning of 2 novel Japanese flounder IL-1 like gene that homolog to other fishes. ► The jfIL1β-L1 and -L2 were distinct from jfIL-1. ► The distributions of jfIL1β-L1 and -L2 transcripts were different from jfIL-1β. ► The both transcripts were not effect by treated with the Edwardsiella tarda FKC and LPS.

Functional analysis of the promoter of the heat shock cognate 70 gene of the Pacific white shrimp, Litopenaeus vannamei Cui Zhao, Xiaojun Zhang, Fuhua Li, Pin Huan, Jianhai Xiang Show preview | PDF (505 K) | Supplementary content | Related articles | Related reference work articles Highlights ► The promoter of Litopenaeus vannamei HSC70 gene was identified. ► The promoter of L. vannamei HSC70 gene could drive EGFP expression in sf9 cells. ► Both positive and negative TEs were revealed in the lvhsc70 promoter.

Erratum

Corrigendum to “Oral immunization of rainbow trout to infectious pancreatic necrosis virus (Ipnv) induces different immune gene expression profiles in head kidney and pyloric ceca” [Fish Shellfish Immunol 33 (2012) 174–185] Show preview | PDF (65 K) | Related articles | Related reference work articles

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VOLUME 79, PART 1, JANUARY 2013 Website

Research articles

Review Article

Animal cellulases with a focus on aquatic invertebrates Aya Tanimura, Wen Liu, Kyohei Yamada, Takushi Kishida… Pages 1-13 Download PDF (372KB) View Article

Original Article

Shelter effects of coralline algal turfs: protection for Turbo cornutus juveniles from predation by a predatory gastropod and wrasse Jun Hayakawa, Tomohiko Kawamura, Hiroaki Kurogi, Yoshiro Watanabe Pages 15-20 Download PDF (312KB) View Article

Abundance and genetic diversity of the red crab Pleuroncodes planipes along the western coast of the Baja California Peninsula, Mexico Juan Antonio De Anda-Montañez, Ricardo Perez-Enriquez… Pages 21-32 Download PDF (533KB) View Article

The ex vivo effects of eyestalk peptides on ovarian vitellogenin gene expression in the kuruma prawn Marsupenaeus japonicus Naoaki Tsutsui, Ayano Nagakura-Nakamura, Chiaki Nagai, Tsuyoshi Ohira… Pages 33-38 Download PDF (279KB) View Article

Considerations on diving patterns of bigeye tuna Thunnus obesus based on archival tag data Takayuki Matsumoto, Takashi Kitagawa, Shingo Kimura Pages 39-46 Download PDF (434KB) View Article

Insulin/insulin-like growth factor-like activity in the aqueous extracts of the rotifer Brachionus plicatilis Yori Ozaki, Gen Kaneko, Fumihiko Hakuno, Shin-Ichiro Takahashi… Pages 47-53 Download PDF (338KB) View Article

Bottom feeding and net chasing improve foraging behavior in hatchery-reared Japanese flounder Paralichthys olivaceus juveniles for stocking Kohji Takahashi, Reiji Masuda, Yoh Yamashita Pages 55-60 Download PDF (301KB) View Article

Mitochondrial DNA barcoding for Okinawan oysters: a cryptic population of the Portuguese oyster Crassostrea angulata in Japanese waters Masashi Sekino, Hiroyoshi Yamashita Pages 61-76 Download PDF (778KB) View Article

Hyposmoregulatory ability and ion- and water-regulatory mechanisms during the leptocephalus stages of Japanese eel Anguilla japonica Kyung Mi Lee, Yoshiaki Yamada, Akihiro Okamura, Katsumi Tsukamoto… Pages 77-86 Download PDF (506KB) View Article

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Trophic structure in natural habitats of the abalone Haliotis discus hannai with distinct algal vegetation of kelp and crustose coralline algae: implication of ontogenetic niche shifts Nam-Il Won, Tomohiko Kawamura, Hideki Takami, Yoshiro Watanabe Pages 87-97 Download PDF (448KB) View Article

Pathogenicity comparison of high- and low-virulence strains of Vibrio scophthalmi in olive flounder Paralichthys olivaceus Guo Qiao, In-Kwon Jang, Kyoung Mi Won, Sung Ho Woo, De-Hai Xu… Pages 99-109 Download PDF (433KB) View Article

High incidence of death due to collision of hatchery-reared Pacific bluefin tuna Thunnus orientalis juveniles in sea cages, as revealed by head and spinal injuries Kentaro Higuchi, Yosuke Tanaka, Takeshi Eba, Akefumi Nishi… Pages 111-117 Download PDF (534KB) View Article

Toxicity and absorption of dietary leucomalachite green in Nile tilapia Oreochromis niloticus Mintra Seel-audom, Laddawan Krongpong, Kunihiko Futami… Pages 119-127 Download PDF (609KB) View Article

A toxicity bioassay study concerning the effect of un-ionized ammonia on the mucus cells response originating from the gills of zebrafish Danio rerio Abdullah Salim Al-Zaidan, Makoto Endo, Masashi Maita… Pages 129-142 Download PDF (1580KB) View Article

Distribution of adipocyte-related cells in skeletal muscle of rainbow trout Oncorhynchus mykiss Yuna Han, Gen Kaneko, Reiko Nagasaka, Hidehiro Kondo, Ikuo Hirono… Pages 143-148 Download PDF (489KB) View Article

Myosin denaturation in heated myofibrils of scallop adductor muscle Aiko Satoh, Yasunori Kinoshita, Kunihiko Konno Pages 149-155

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VOLUME 700, JANUARY 2013 Website

Research articles

Testing effects of shore height level, sediment characteristics and vegetation cover on the seasonality of zoopsammon communities in the two boreal lakes differing in their trophic state Külli Lokko, Taavi Virro, Jonne Kotta Pages 1-8 Download PDF (273KB) View Article

The importance of transport processes and spatial gradients on in situ estimates of lake metabolism Jason P. Antenucci, Kok Meng Tan, Hans S. Eikaas, J. Imberger Pages 9-21 Download PDF (963KB) View Article

Global climate change will severely decrease potential distribution of the East Asian coldwater fish Rhynchocypris oxycephalus (Actinopterygii, Cyprinidae) Dan Yu, Ming Chen, Zhuocheng Zhou, Rochard Eric, Qiongying Tang… Pages 23-32 Download PDF (458KB) View Article

Allochronic divergence and clonal succession: two microevolutionary processes sculpturing population structure of Brachionus rotifers Spiros Papakostas, Evangelia Michaloudi, Alexander Triantafyllidis… Pages 33-45 Download PDF (412KB) View Article

Effect of substratum drying on the survival and migrations of Ponto-Caspian and native gammarids (Crustacea: Amphipoda) Małgorzata Poznańska, Tomasz Kakareko, Maciej Krzyżyński, Jarosław Kobak Pages 47-59 Download PDF (500KB) View Article

Substratum associations and depth distribution of benthic invertebrates in saline Walker Lake, Nevada, USA David B. Herbst, R. Bruce Medhurst, Scott W. Roberts, Robert Jellison Pages 61-72 Download PDF (629KB) View Article

Coupling between macroalgal inputs and nutrients outcrop in exposed sandy beaches F. Barreiro, M. Gómez, J. López, M. Lastra, R. de la Huz Pages 73-84 Download PDF (537KB) View Article

Habitat quality affects the condition of Luciobarbus sclateri in the Guadiamar River (SW Iberian Peninsula): effects of disturbances by the toxic spill of the Aznalcóllar mine Ramón José De Miguel, Francisco José Oliva-Paterna, Lucía Gálvez-Bravo… Pages 85-97 Download PDF (355KB) View Article

Patterns of substrata use by the invasive acorn barnacle Balanus glandula in Patagonian salt marshes María M. Mendez, Evangelina Schwindt, Alejandro Bortolus Pages 99-107 Download PDF (327KB) View Article

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Photosynthesis in relation to D1, PsaA and Rubisco in marine and brackish water ecotypes of Fucus vesiculosus and Fucus radicans (Phaeophyceae) A. Maria Gylle, Charlotta A. Nygård, Carina I. Svan, Tessa Pocock… Pages 109-119 Download PDF (312KB) View Article

Abiotic factors affect microhabitat selection and community dynamics in a sandy-bottom lotic chironomid midge assemblage John G. Rae Pages 121-130 Download PDF (265KB) View Article

Transfer of 137Cs from water to fish is not linear in two northern lakes Tiina S. Tuovinen, Chutarat Saengkul, Jarkko Ylipieti, Dina Solatie… Pages 131-139 Download PDF (331KB) View Article

+ − Pore water N:P and NH4 :NO3 alter the response of Phragmites australis and Glyceria maxima to extreme nutrient regimes Edita Tylová, Lenka Steinbachová, Aleš Soukup, Vít Gloser, Olga Votrubová Pages 141-155 Download PDF (429KB) View Article

Effects of substrate and shading on the growth of two submerged macrophytes Jing Lu, Zhixiu Wang, Wei Xing, Guihua Liu Pages 157-167 Download PDF (836KB) View Article

Denitrification rates and controlling factors in two agriculturally influenced temporary Mediterranean saline streams María Isabel Arce, Rosa Gómez, María Luisa Suárez… Pages 169-185 Download PDF (473KB) View Article

Growth response of Microcystis spp. to iron enrichment in different regions of Lake Taihu, China Hai Xu, Guangwei Zhu, Boqiang Qin, Hans W. Paerl Pages 187-202 Download PDF (550KB) View Article

The impact of conifer plantation forestry on the Chydoridae (Cladocera) communities of peatland lakes T. J. Drinan, C. T. Graham, J. O’Halloran, S. S. C. Harrison Pages 203-219 Download PDF (367KB) View Article

Importance of methane-derived carbon as a basal resource for two benthic consumers in arctic lakes Cassandra A. Medvedeff, Anne E. Hershey Pages 221-230 Download PDF (321KB) View Article

Stable isotopes as indicators of wastewater effects on the macroinvertebrates of urban rivers Christy A. Morrissey, Alyosha Boldt, Alyson Mapstone, Jason Newton… Pages 231-244 Download PDF (375KB) View Article

Evolution of predator avoidance in a Daphnia population: evidence from the egg bank Leif K. Hembre, Laura Ann Peterson Pages 245-255 Download PDF (345KB) View Article

Unimodal patterns of microbial communities with eutrophication in Mediterranean shallow lakes

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Ana Conty, Eloy Bécares Pages 257-265 Download PDF (357KB) View Article

Metabolic responses of tadpoles to chemical predation cues Michael J. Barry, Shruti Syal Pages 267-276 Download PDF (244KB) View Article

Downstream migration and hematophagous feeding of newly metamorphosed sea lampreys (Petromyzon marinus Linnaeus, 1758) S. Silva, M. J. Servia, R. Vieira-Lanero, F. Cobo Pages 277-286 Download PDF (392KB) View Article

Change in a lake benthic community over a century: evidence for alternative community states Alexander Y. Karatayev, Lyubov E. Burlakova, M. Jake Vander Zanden… Pages 287-300 Download PDF (551KB) View Article

New methods for the investigation of leaf litter breakdown in river sediments Simon Navel, Christophe Piscart, Florian Mermillod-Blondin… Pages 301-312 Download PDF (377KB) View Article

Fairy shrimps in distress: a molecular taxonomic review of the diverse fairy shrimp genus Branchinella (Anostraca: Thamnocephalidae) in Australia in the light of ongoing environmental change Tom Pinceel, Bram Vanschoenwinkel, Aline Waterkeyn, Maarten P. M. Vanhove… Pages 313-327 Download PDF (578KB) View Article

Effects of macrophyte-associated nitrogen cycling bacteria on denitrification in the sediments of the eutrophic Gonghu Bay, Taihu Lake Yichao Wang, Zhengkui Li, Li Zhou, Lulu Feng, Nianwen Fan, Ji Shen Pages 329-341 Download PDF (500KB) View Article

Fish-SPRICH: a database of freshwater fish species richness throughout the World Sébastien Brosse, Olivier Beauchard, Simon Blanchet, Hans H. Dürr… Pages 343-349 Download PDF (267KB) View Article

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VOLUME 701, JANUARY 2013 Website

Research articles

Opinion Paper

North Atlantic coastal lagoons: conservation, management and research challenges in the twenty-first century Nicola A. Beer, Chris B. Joyce Pages 1-11 Download PDF (278KB) View Article

Primary Research Paper

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Ecological correlates between cladocerans and their endoparasites from permanent and rain pools: patterns in community composition and diversity Liron Goren, Frida Ben-Ami Pages 13-23 Download PDF (419KB) View Article

Plankton community dynamics during decay of a cyanobacteria bloom: a mesocosm experiment Jonna Engström-Öst, Riitta Autio, Outi Setälä, Sanna Sopanen… Pages 25-35 Download PDF (371KB) View Article

Juvenile Ribbontail Stingray, Taeniura lymma (Forsskål, 1775) (Chondrichthyes, Dasyatidae), demonstrate a unique suite of physiological adaptations to survive hyperthermic nursery conditions Theresa F. Dabruzzi, Wayne A. Bennett, Jodie L. Rummer, Nann A. Fangue Pages 37-49 Download PDF (393KB) View Article

Managing wetlands as off-river storages: impacts on zooplankton communities S. C. Watkins, N. S. P. Ning, B. Gawne, D. L. Nielsen Pages 51-63 Download PDF (725KB) View Article

Seasonal phosphorus dynamics in the surficial sediment of two shallow temperate lakes: a solid-phase and pore-water study Aria Amirbahman, Bjorn A. Lake, Stephen A. Norton Pages 65-77 Download PDF (520KB) View Article

Resuspension-mediated aluminium and phosphorus distribution in lake sediments after aluminium treatment Sara Egemose, Kasper Reitzel, Frede Ø. Andersen, Henning S. Jensen Pages 79-88 Download PDF (362KB) View Article

Differential patterns of infection and life-history expression in native and invasive hosts exposed to a trematode parasite Gregory J. Sandland, Stephen Houk, Benjamin Walker, Roger J. Haro… Pages 89-98 Download PDF (396KB) View Article

Geometric shape as a trait to study phytoplankton distributions in aquatic ecosystems Elena Stanca, Maria Cellamare, Alberto Basset Pages 99-116 Download PDF (911KB) View Article

Strong consequences of diet choice in a talitrid amphipod consuming seagrass and algal wrack Alistair G. B. Poore, Kimberly M. Gallagher Pages 117-127 Download PDF (424KB) View Article

Effects of anthropogenic salinisation on the ecological status of macroinvertebrate assemblages in the Werra River (Thuringia, Germany) Jens Arle, Falko Wagner Pages 129-148 Download PDF (917KB) View Article

Plasticity of diel patterns in the diet and habitat use of feral, non-native fathead minnow Pimephales promelas (Actinopterygii, Cyprinidae) in a pond-dwelling population in England Michael J. Godard, David Almeida, Grzegorz Zięba, Gordon H. Copp Pages 149-158 Download PDF (486KB) View Article

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Do productivity and disturbance interact to modulate macroinvertebrate diversity in streams? Jonathan D. Tonkin, Russell G. Death, Kevin J. Collier Pages 159-172 Download PDF (464KB) View Article

Invasive Salix fragilis alters benthic invertebrate communities and litter decomposition in northern Patagonian streams María Noel Serra, Ricardo Albariño, Verónica Díaz Villanueva Pages 173-188 Download PDF (544KB) View Article

Relationships between ecosystem metabolism, benthic macroinvertebrate densities, and environmental variables in a sub-arctic Alaskan river Emily R. Benson, Mark S. Wipfli, Joanne E. Clapcott, Nicholas F. Hughes Pages 189-207 Download PDF (1019KB) View Article

Impacts of UV radiation on respiration, ammonia excretion, and survival of copepods with different feeding habits Zengling Ma, Wei Li, Kunshan Gao Pages 209-218 Download PDF (360KB) View Article

Comparing biological classifications of freshwater phytoplankton: a case study from South China Ren Hu, Boping Han, Luigi Naselli-Flores Pages 219-233 Download PDF (481KB) View Article

Occurrence of cyanobacteria and cyanotoxin in the Southern Baltic Proper. Filamentous cyanobacteria versus single-celled picocyanobacteria Hanna Mazur-Marzec, Katarzyna Sutryk, Justyna Kobos, Agnieszka Hebel… Pages 235-252 Download PDF (769KB) View Article

Microalgal plankton composition in shallow coastal inlets in contrasting trophic and alternative community states Matias Scheinin, Conny Sjöqvist, Johanna Mattila Pages 253-271 Download PDF (748KB) View Article

Influence of environmental variability on anchovy early life stages (Engraulis encrasicolus) in two different areas of the Central Mediterranean Sea A. Bonanno, S. Zgozi, A. Cuttitta, A. El Turki, A. Di Nieri, H. Ghmati… Pages 273-287 Download PDF (617KB) View Article

Influence of benthic macrofauna on microbial production of methylmercury in sediments on the New England continental shelf Geraldine Nogaro, Chad R. Hammerschmidt Pages 289-299 Download PDF (300KB) View Article

Changes in microphytobenthos fluorescence over a tidal cycle: implications for sampling designs E. Maggi, A. C. Jackson, T. Tolhurst, A. J. Underwood, M. G. Chapman Pages 301-312 Download PDF (382KB) View Article

Lamprey larvae as ecosystem engineers: physical and geochemical impact on the streambed by their burrowing behavior Hokuto Shirakawa, Seiji Yanai, Akira Goto Pages 313-322 Download PDF (380KB) View Article

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Erratum

Erratum to: Fish habitat use response to anthropogenic induced changes of physical processes in the Elwha estuary, Washington, USA J. Anne Shaffer, M. Beirne, T. Ritchie, R. Paradis, D. Barry, P. Crain Pages 323-324 Download PDF (173KB) View Article

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VOLUME 702, FEBRUARY 2013 Website

Research articles

Opinion paper

The propagation and dispersal of misinformation in ecology: Is there a relationship between citation accuracy and journal impact factor? D. C. Drake, B. Maritz, S. M. Jacobs, C. J. Crous, A. Engelbrecht… Pages 1-4 Download PDF (185KB) View Article

Primary Research Paper

Trophic analysis of two subtropical South American freshwater crabs using stable isotope ratios Edward D. Burress, Michael M. Gangloff, Lynn Siefferman Pages 5-13 Download PDF (617KB) View Article

Microhabitat variability of macrobenthic organisms within tidal creek systems Travis Washburn, Denise M. Sanger Pages 15-25 Download PDF (529KB) View Article

Species distribution and assembly patterns of frog larvae in rainforest streams of Madagascar Axel Strauß, Roger Daniel Randrianiaina, Miguel Vences, Julian Glos Pages 27-43 Download PDF (516KB) View Article

Zooplankton dynamics in response to the transition from drought to flooding in four Murray–Darling Basin rivers affected by differing levels of flow regulation Nathan S. P. Ning, Ben Gawne, Robert A. Cook, Daryl L. Nielsen Pages 45-62 Download PDF (589KB) View Article

Food selection by a mangrove crab: temporal changes in fasted animals Ronaldo A. Christofoletti, Gustavo Y. Hattori, Marcelo A. A. Pinheiro Pages 63-72 Download PDF (361KB) View Article

Life-history responses of salinity-tolerant and salinity-sensitive lineages of a stenohaline cladoceran do not confirm clonal differentiation Cláudia Loureiro, Bruno B. Castro, Ana P. Cuco, M. Arminda Pedrosa… Pages 73-82 Download PDF (402KB) View Article

Water integration in the clonal emergent hydrophyte, Justicia americana: benefits of acropetal water transfer from mother to daughter ramets Brant W. Touchette, John W. G. Moody, Caitlin M. Byrne, Sarah E. Marcus Pages 83-94 Download PDF (472KB) View Article Aquaculture Journals Page: 93 of 167

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Hidden diversity of eukaryotic plankton in the soda lake Nakuru, Kenya, during a phase of low salinity revealed by a SSU rRNA gene clone library Wei Luo, Kiplagat Kotut, Lothar Krienitz Pages 95-103 Download PDF (285KB) View Article

Fitness benefits and costs of induced defenses in Daphnia carinata (Cladocera: Daphnidae) exposed to cyanobacteria Xiaodong Jiang, Huishuang Liang, Wei Yang, Jie Zhang, Yunlong Zhao… Pages 105-113 Download PDF (456KB) View Article

Influence of reservoirs on phytoplankton dispersion and functional traits: a case study in the Upper Paraná River, Brazil Vânia Mara Bovo-Scomparin, Sueli Train, Luzia Cleide Rodrigues Pages 115-127 Download PDF (515KB) View Article

Microcrustacean assemblages in a large river: on the importance of the flow regime Csaba Vadadi-Fülöp Pages 129-140 Download PDF (424KB) View Article

In vitro antibiotic resistance of Vibrio-like organisms isolated from seawater and sand of marine recreation beach in the southern Baltic Sea Z. J. Mudryk, A. Kosiorek, P. Perliński Pages 141-150 Download PDF (373KB) View Article

Impacts of declining water levels on the quantity of fish habitat in coastal wetlands of eastern Georgian Bay, Lake Huron Amanda Fracz, Patricia Chow-Fraser Pages 151-169 Download PDF (923KB) View Article

Spatial and temporal variability of light attenuation in large rivers of the Amazon M. P. F. Costa, E. M. L. M. Novo, K. H. Telmer Pages 171-190 Download PDF (890KB) View Article

Molecular characterization and hybridization in Salmo (trutta) macrostigma morphotypes from Central Italy Giacomo Querci, Elena Pecchioli, Claudio Leonzio, Francesco Frati… Pages 191-200 Download PDF (315KB) View Article

Nothing but a trace left? Autochthony and conservation status of Northern Adriatic Salmo trutta inferred from PCR multiplexing, mtDNA control region sequencing and microsatellite analysis A. Meraner, P. Gratton, F. Baraldi, A. Gandolfi Pages 201-213 Download PDF (423KB) View Article

The impact of zebra mussel (Dreissena polymorpha) periostracum and biofilm cues on habitat selection by a Ponto-Caspian amphipod Dikerogammarus haemobaphes Jarosław Kobak, Tomasz Kakareko, Łukasz Jermacz, Małgorzata Poznańska Pages 215-226 Download PDF (375KB) View Article

Antipredator-induced trait changes in Brachionus and prey selectivity by Asplanchna in a large river under low-discharge conditions: evidence from a field study

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Isabella Bertani, Stefano Leonardi, Giampaolo Rossetti Pages 227-239 Download PDF (450KB) View Article

Aerial and underwater metabolism of Patella vulgata L.: comparison of three intertidal levels Morgana Tagliarolo, Jacques Grall, Laurent Chauvaud, Jacques Clavier Pages 241-253 Download PDF (405KB) View Article

Contribution of nitrogen fixation to the external nitrogen load of a water quality control reservoir (Kis-Balaton Water Protection System, Hungary) Hajnalka Horváth, Kálmán Mátyás, György Süle, Mátyás Présing Pages 255-265 Download PDF (365KB) View Article

Using functional approaches to study phytoplankton communities in a temperate region exposed to tropical species dispersal Maria Cellamare, Paula de Tezanos Pinto, Maria Leitão, Michel Coste… Pages 267-282 Download PDF (497KB) View Article

Health, condition, and survival of creek chub (Semotilus atromaculatus) across a gradient of stream habitat quality following an experimental cortisol challenge Alexander Nagrodski, Cory D. Suski, Steven J. Cooke Pages 283-296 Download PDF (280KB) View Article

Erratum

Erratum to: Hydroclimatic and hydrochemical controls on Plecoptera diversity and distribution in northern freshwater ecosystems Laura M. Kruitbos, Doerthe Tetzlaff, Chris Soulsby, Jim Buttle… Page 297 Download PDF (95KB) View Article

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VOLUME 703, FABRUARY 2013 Website

Research articles

Greater phosphorus uptake in forested headwater streams modified by clearfell forestry Ryan M. Burrows, Jason B. Fellman, Regina H. Magierowski, Leon A. Barmuta Pages 1-14 Download PDF (417KB) View Article

The historical development of vegetation of foreshore mires beside humic lakes: different successional pathways under various environmental conditions Danuta Drzymulska, Stanisław Kłosowski, Paweł Pawlikowski, Piotr Zieliński… Pages 15-31 Download PDF (939KB) View Article

Factors affecting the establishment of the invasive crayfish Procambarus clarkii (Crustacea, Decapoda) in the Mediterranean rivers of the northeastern Iberian Peninsula A. Maceda-Veiga, A. De Sostoa, S. Sánchez-Espada Pages 33-45 Download PDF (372KB) View Article

Summer stream temperature metrics for predicting brook trout (Salvelinus fontinalis) distribution in streams Aquaculture Journals Page: 95 of 167

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Ryan S. Butryn, Donna L. Parrish, Donna M. Rizzo Pages 47-57 Download PDF (436KB) View Article

The flow velocity as driving force for decomposition of leaves and twigs André Luiz dos Santos Fonseca, Irineu Bianchini Jr.… Pages 59-67 Download PDF (245KB) View Article

Contrast and rate of light intensity decrease control directional swimming in the box jellyfish Tripedalia cystophora (Cnidaria, Cubomedusae) Ronald Petie, Anders Garm, Dan-Eric Nilsson Pages 69-77 Download PDF (497KB) View Article

Mass developments of the cyanobacteria Anabaenopsis and Cyanospira (Nostocales) in the soda lakes of Kenya: ecological and systematic implications Lothar Krienitz, Pawan K. Dadheech, Kiplagat Kotut Pages 79-93 Download PDF (1072KB) View Article

Dry-season changes in macroinvertebrate assemblages of highly seasonal rivers: responses to low flow, no flow and antecedent hydrology Catherine Leigh Pages 95-112 Download PDF (656KB) View Article

Comparative feeding ecology of invasive Ponto-Caspian gobies Joerg Brandner, Karl Auerswald, Alexander F. Cerwenka, Ulrich K. Schliewen… Pages 113- 131 Download PDF (654KB) View Article

When do beetles and bugs fly? A unified scheme for describing seasonal flight behaviour of highly dispersing primary aquatic insects P. Boda, Z. Csabai Pages 133-147 Download PDF (584KB) View Article

Benthic indicators of sediment quality associated with run-of-river reservoirs Colas Fanny, Archaimbault Virginie, Férard Jean-François… Pages 149-164 Download PDF (616KB) View Article

Mollusc communities along upstream–downstream gradients in small coastal basins of the south-western Iberian Peninsula J. C. Pérez-Quintero Pages 165-175 Download PDF (367KB) View Article

Zooplankton to phytoplankton biomass ratios in shallow Florida lakes: an evaluation of seasonality and hypotheses about factors controlling variability Karl E. Havens, John R. Beaver Pages 177-187 Download PDF (1044KB) View Article

Effects of Phoslock® treatment and chironomids on the exchange of nutrients between sediment and water Kasper Reitzel, Stephan Lotter, Mirjam Dubke, Sara Egemose… Pages 189-202 Download PDF (457KB) View Article

Influence of a forest remnant on macroinvertebrate communities in a degraded tropical stream Cristiane M. Suga, Marcel O. Tanaka Pages 203-213 Download PDF (289KB) View Article

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Stock identification of Raja clavata L. (Chondrichthyes, Rajidae) in two contiguous areas of the Mediterranean Teresa Bottari, Paola Rinelli, Marco L. Bianchini, Sergio Ragonese Pages 215-224 Download PDF (372KB) View Article

Responses of epibenthic algal assemblages to water abstraction in Hong Kong streams Tao Tang, Sophia Qian Niu, David Dudgeon Pages 225-237 Download PDF (293KB) View Article

Dissimilarity of stream insect assemblages: effects of multiple scales and spatial distances Luiz Ubiratan Hepp, Adriano S. Melo Pages 239-246 Download PDF (256KB) View Article

Role of body size and temporal hydrology in the dietary shifts of shortjaw tapertail anchovy Coilia brachygnathus (Actinopterygii, Engraulidae) in a large floodplain lake Huan Zhang, Gongguo Wu, Huan Zhang, Ping Xie, Jun Xu, Qiong Zhou Pages 247-256 Download PDF (441KB) View Article

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VOLUME 59, ISSUE 4, 2012 Website

Research articles

Artisanal fishery of elasmobranchs within two marine protected areas in the Upper Gulf of California PDF Gerardo Rodriguez-Quiroz, Eugenio Alberto Aragón-Noriega, M. A. Cisneros Mata

Environmental determinism of sex-ratio in the bleak, Alburnus alburnus (Linnaeus, 1758) (Cyprinidae) in Keddara dam, Algeria PDF Attou Fouzia, Arab Abdeslem

Follicle formation and oocyte growth in the silver butter catfish, Schilbe intermedius Rüppell, 1832 (Siluriformes, Schilbeidae) PDF Grace Emily Okuthe

Comparative otolith morphology of sciaenids occurring along the north-west coast of India PDF Pawan Kumar, S.K. Chakraborty, A.K. Jaiswar

Capture based aquaculture of mud spiny lobster, Panulirus polyphagus (Herbst, 1793) in open sea floating net cages off Veraval, north-west coast of India PDF Sureshkumar Mojjada, Imelda Joseph, K Mohammed Koya, K. R. Sreenath, Gyanaranjan Dash, Swatipriyanka Sen, Mahendra D. Fofandi, M. Anbarasu, H. M. Bhint, S. Pradeep, P. Shiju, G. Syda Rao

Fishery of elasmobranchs with some observations on the biology and stock assessment of Carcharhinus limbatus (P. Muller & Henle, 1839) exploited along Malabar coast PDF P.P. Manojkumar, P.U Zacharia, P.P. Pavithran

Seasonal fish diversity under tidal influence in the intertidal mudflats of Indian Sundarbans PDF Niloy Kundu, Atreyee Chaudhuri, Sudeshna Mukherjee, Shilpa Sen, Sumit Homechaudhuri

Fishery and population dynamics of two species of carangids, Decapterus russelli (Ruppell, 1830) and Megalaspis cordyla (Linnaeus, 1758) from Mumbai waters PDF Debabrata Panda, Sushanta K Chakraborty, Ashok K Jaiswar, Anil P Sharma, Bankim C Jha, Bhawesh T Sawant, Sarada K Bhagabati, Tarkeshwar Kumar

Fishery and diet composition of the cobia Rachycentron canadum (Linnaeus, 1766) exploited along Karnataka coast PDF Prathibha Rohit, Uma S Bhat

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Fishery and some aspects of reproductive biology of two coastal species of tuna, Auxis thazard (Lacepède, 1800) and Euthynnus affinis(Cantor, 1849) off north Andhra Pradesh, India PDF Sujatha Kandula, Vaddiparti Iswarya Deepti

Food and feeding habits of commercially important demersal finfishes off Veraval coast PDF R. Thangavelu, Mahalingam Anbarasu, M. S. Zala, K. Mohammed Koya, K. R. Sreenath, Suresh Kumar Mojjada, P. Shiju

Molecular identification of heat shock protein 70 (Hsp70) gene in the Indian edible oyster Crassostrea madrasensis (Preston) and Indian brown mussel Perna indica Kuriakose & Nair, 1976 PDF Meleth Porinchu Paulton, P.C. Thomas, K.K. Vijayan

Comparative histophysiology of pancreas in Cirrhinus mrigala (Hamilton, 1822), Oreochromis niloticus (Linnaeus, 1758) and Wallago attu (Bloch & Schneider, 1801) PDF Padmanabha Chakrabarti, Saroj Kumar Ghosh

Silk cotton cake as an alternate protein source in the diet of tiger shrimp, Penaeus monodon Fabricius 1798, and its effects on growth, nitrogen utilisation and metabolism PDF V. Rajaram, J. Syama Dayal, K. Ambasankar, S. Ahamad Ali

Unraveling the effects of live microalgal enrichment on Artemia nauplii PDF P.A Vikas, Chakraborty Kajal, N.K Sajeshkumar, P.C Thomas, N.K Sanil, K.K Vijayan

Effectiveness of sensitisation on the awareness levels of Fishery Extension Officers on Pacific white shrimp (Litopenaeus vannamei) farming in India PDF M Kumaran, P Ravichandran, A. Panigrahi, M.K. Sinha, S. Nagarajan, D.D. Vimala, A.G. Ponniah

Phytoplankton diversity of a floodplain lake of the Brahmaputra River basin of Assam, north-east India PDF B K Sharma

Length-weight relationship and condition factor of the pabo catfish Ompok pabo (Hamilton, 1822) from Tripura, India PDF Pampa Bhattacharya, Sukanta Banik

Reproductive biology of the sleeper goby, Butis gymnopomus (Bleeker, 1853) from the Merbok Estuary, Kedah, Malaysia PDF Mansor Mat Isa, Nur-Ili-Alia Doroh, Farahiyah Khadijah Ambri, Ng Wing Keong

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Length-weight relationship of Macrobrachium lar (Fabricius, 1798), an endemic freshwater prawn in streams and ponds of Andaman and Nicobar Islands PDF Satyanarayan Sethi, Nagesh Ram, V Venkatesan

Diet and eyestalk ablation induced changes in lipid and fatty acid composition of female spiny lobster Panulirus homarus (Linnaeus, 1758) PDF Mahalingam Anbarasu, R. Kirubagaran, N. V. Vinithkumar

Hematological parameters in relation to sex, morhometric characters and incidence of white spot syndrome virus in tiger shrimp Penaeus monodon Fabricius, 1798 from Sunderban, West Bengal PDF R. Ananda Raja, Sujeet Kumar, Jithendra Kumar Sundaray, Debasis De, Gouranga Biswas, Tapas Kumar Ghoshal

Note

Survey of fish abundance in Campbell Bay, Great Nicobar Island PDF Christopher Roy Thanka Sundaram

Identification of antioxidant enzyme genes of the Indian edible oyster, Crassostrea madrasensis (Preston) through polymerase chain reaction PDF Meleth Porinchu Paulton, P.C. Thomas, K.K. Vijayan

Clinical and histopathological investigations in exotic catfish Pangasianodon hypophthalmus (Sauvage, 1878) under culture condition PDF Md. Ali Reza Faruk, Z. P. Patwary, M. M. Hasan

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VOLUME 4, ISSUE 1, 2012 Website

Research articles

-Hich Tran Vi, Quyen Vu Dang Ha, Dung Nguyen Huu and Heidrun Inger Wergeland; Experimental Streptococcus iniae infection in barramundi (Lates calcarifer) cultured in Vietnam; 3-12.

-Jorge Castro Mejía, Amin Eimanifar, Germán Castro Mejía, Norma Fabiola Alcántara Muñiz, Michael Wink; Morphometric comparison of two bisexual species of Artemia: Artemia franciscana Kellogg, 1906 from México and Artemia urmiana Günther,1899 from Lake Urmia; 13-23.

-Nguyen Thi Thanh Thuy, Dung Huu Nguyen and Heidrun I. Wergeland; Specific humoral immune response and protection against Vibrio parahaemolyticus in orange-spotted grouper Epinephelus coioides; 24-35.

-Adebowale Toba Odeyemi, Samuel Oluyemi Adefemi and Adewole Alaba Adebayo; Antimicrobial and Proximate Properties of Some Processed Honey in Ado-Ekiti; 36-43. -Santiago A. Echaniz, Gabriela C. Cabrera, Carolina Rodríguez and Alicia M. Vignatti; Do temporary lakes vary from year to year? A comparison of limnological parameters and zooplankton from two consecutive annual cycles in an Argentine temporary saline lake; 44-61.

-Adil Aliyev, Reza Ahmadi, Akif Bayramov, Masoud Seidgar and Mahir Maharramov; The assessment of organic contamination of the Aras reservoir based on hydrobiological indicators; 63-73.

-Ali Al-Aidaroos; Factors controlling mortality of Red Sea Brachyuran crab larvae in rearing systems; 74-81.

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VOLUME 29, ISSUE 1, FEBRUARY 2012 Website

Research articles

Shovelnose sturgeon exhibit predator avoidance behaviour in the presence of a hungry predator (pages 2–5) W. D. Hintz, G. T. Grimes and J. E. Garvey Abstract Full Article (HTML) PDF(219K) References

Hematology and plasma chemistry of wild shortnose sturgeon Acipenser brevirostrum from Delaware River, USA (pages 6–14) M. A. Matsche, K. M. Rosemary, H. M. Brundage III and J. C. O'Herron II Abstract Full Article (HTML) PDF(186K) References

Assessment of spatio-temporal variation in larval abundance of lake sturgeon (Acipenser fulvescens) in the Rupert River (Quebec, Canada), using drift nets (pages 15–25) R. Verdon, J.-C. Guay, M. La Haye, M. Simoneau, A. Côté-Bherer, N. Ouellet and M. Gendron Abstract Full Article (HTML) PDF(2311K) References

Effect of winter feeding and starvation on the growth performance of young-of- year (YOY) great sturgeon, Huso huso (pages 26–30) B. Falahatkar, S. R. Akhavan, I. Efatpanah and B. Meknatkhah Abstract Full Article (HTML) PDF(333K) References

Spatial distribution and habitat suitability indices for non-spawning and spawning adult Chinese sturgeons below Gezhouba Dam, Yangtze River: Effects of river alterations (pages 31–40) C. Wang, B. Kynard, Q. Wei, H. Du and H. Zhang Abstract Full Article (HTML) PDF(653K) References

Evaluation of passive integrated transponder tag retention from two tagging locations in juvenile pallid sturgeon (pages 41–43) M. J. Hamel, K. D. Steffensen, J. J. Hammen and M. A. Pegg Abstract Full Article (HTML) PDF(177K) References

Effects of river stage height and water temperature on diet composition of year- 0 sturgeon (Scaphirhynchus spp.): a multi-year study (pages 44–50) D. R. Sechler, Q. E. Phelps, S. J. Tripp, J. E. Garvey, D. P. Herzog, D. E. Ostendorf, J. W. Ridings, J. W. Crites and R. A. Hrabik Abstract Full Article (HTML) PDF(350K) References

Molecular cytogenetic study on the ploidy status in Acipenser mikadoi (pages 51– 55) H. Zhou, T. Fujimoto, S. Adachi, S. Abe, E. Yamaha and K. Arai Abstract Full Article (HTML) PDF(380K) References

Feeding habits and predator-prey size relationships of mandarin fish Siniperca chuatsi (Basilewsky) in a shallow lake, central China (pages 56–63) W. Li, T. Zhang, S. Ye, J. Liu and Z. Li Abstract Full Article (HTML) PDF(781K) References

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Age, growth and reproduction of the white seabream Diplodus sargus sargus (Linneaus, 1758) off the eastern coast of Algeria (pages 64–70) W. Benchalel and M. H. Kara Abstract Full Article (HTML) PDF(442K) References

Comparative analysis of male germ cell proliferation and apoptosis in wild and captive Atlantic bluefin tuna (Thunnus thynnus L.) (pages 71–81) R. Zupa, C. Fauvel, C. C. Mylonas, N. Santamaria, L. Valentini, C. Pousis, M. Papadaki, M. Suquet, F. de la Gándara, G. Bello, G. De Metrio and A. Corriero Abstract Full Article (HTML) PDF(875K) References

Phylogenetic relationships among North Atlantic redfish (genus Sebastes) as revealed by mitochondrial DNA sequence analyses (pages 82–92) C. Bunke, R. Hanel and J. H. Trautner Abstract Full Article (HTML) PDF(331K) References

Present status of the multi-gear shrimp fishery off the west coast of Sri Lanka: gear-based species diversity and selectivity (pages 93–107) M. D. S. T. de Croos and S. Pálsson Abstract Full Article (HTML) PDF(922K) References

Characterization of the mesophotic reef fish community in south Florida, USA (pages 108–117) D. R. Bryan, K. Kilfoyle, R. G. Gilmore Jr and R. E. Spieler Abstract Full Article (HTML) PDF(441K) References

Abundance of young-of-the-year migratory Characiforms in floodplain areas of the middle Solimões-Amazon River at flooding 2007/2008 (pages 118–124) C. E. Mounic-Silva and R. G. Leite Abstract Full Article (HTML) PDF(239K) References

Age, growth, reproduction and feeding of John Dory, Zeus faber (Pisces: Zeidae), in the Saros Bay (North Aegean Sea) (pages 125–131) A. Ismen, M. Arslan, C. C. Yigin and N. A. Bozbay Abstract Full Article (HTML) PDF(440K) References

Reproductive biology of Prochilodus argenteus Agassiz, 1829 (Pisces: Prochilodontidae) in São Francisco River, Brazil (pages 132–138) O. Boncompagni-Júnior, F. T. Normando, M. F. G. Brito and N. Bazzoli Abstract Full Article (HTML) PDF(734K) References

Rare or just unknown? The occurrence of the giant devil ray (Mobula mobular) in the Adriatic Sea (pages 139–144) D. Holcer, B. Lazar, P. Mackelworth and C. M. Fortuna Abstract Full Article (HTML) PDF(263K) References

Isolation of tannase-producing microbiota from the gastrointestinal tracts of some freshwater fish (pages 145–153) S. Mandal and K. Ghosh Abstract Full Article (HTML) PDF(691K) References

Lipid-based indicators of nutritional condition in juvenile sole Solea solea (pages 154–162) V. F. Fonseca, L. Narciso and H. N. Cabral Abstract Full Article (HTML) PDF(635K) References

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Influences of dams with different levels of river connectivity on the fish community structure along a tropical river in Southeastern Brazil (pages 163– 171) A. B. I. Santos, R. J. Albieri and F. G. Araujo Abstract Full Article (HTML) PDF(356K) References

Expertomica Fishgui: comparison of fish skin colour (pages 172–180) J. Urban, D. Štys, M. Sergejevová and J. Masojídek Abstract Full Article (HTML) PDF(1325K) References

Diet overlap of juvenile salema (Sarpa salpa), bogue (Boops boops) and common two-banded sea bream (Diplodus vulgaris) in the south-eastern Adriatic (pages 181–185) T. Dobroslavić, A. Zlatović, V. Bartulović, D. Lučić and B. Glamuzina Abstract Full Article (HTML) PDF(264K) References

Age, growth and habitat use of the topmouth gudgeon, Pseudorasbora parva in irrigation ditches on northwestern Kyushu Island, Japan (pages 186–192) N. Onikura and J. Nakajima Abstract Full Article (HTML) PDF(440K) References

Colour intensity in angelfish (Pterophyllum scalare) as influenced by dietary microalgae addition (pages 193–199) A. Kouba, J. Sales, M. Sergejevová, P. Kozák and J. Masojídek Abstract Full Article (HTML) PDF(583K) References

Feeding strategies of Atherina boyeri (Risso 1810) in a freshwater ecosystem (pages 200–207) E. Doulka, G. Kehayias, E. Chalkia and I. D. Leonardos Abstract Full Article (HTML) PDF(490K) References

The genus Gymnotus (Gymnotiformes: Gymnotidae) in Argentina. How bad taxonomy results in poor regulations and no conservation (pages 208–212) J. Casciotta, A. Almirón, S. Sánchez, J. Iwaszkiw and M. C. Bruno Abstract Full Article (HTML) PDF(545K) References

Evaluation of optimum dietary vitamin E requirements using DL-α-tocopheryl acetate in the juvenile eel, Anguilla japonica (pages 213–217) J.-Y. Bae, G. H. Park, K.-Y. Yoo, J.-Y. Lee, D.-J. Kim and S. C. Bai Abstract Full Article (HTML) PDF(280K) References

Environmentally induced shift in reproductive traits of a long-term established population of topmouth gudgeon (Pseudorasbora parva) (pages 218–220) E. Záhorská and V. Kováč Abstract Full Article (HTML) PDF(168K) References

Movement and feeding ecology of recently emerged steelhead in Lake Ontario tributaries (pages 221–225) J. H. Johnson, J. E. McKenna Jr and K. A. Douglass Abstract Full Article (HTML) PDF(328K) References

Carcass traits of two marketable size classes of Pangasius pangasius (Hamilton, 1822) (pages 226–229) B. B. Sahu, S. K. Sahoo, S. S. Giri, P. C. Das, B. Mishra, A. K. Sahu, A. E. Eknath and P. Jayasankar

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Abstract Full Article (HTML) PDF(217K) References

The relationship between somatic growth and otolith dimensions of Mediterranean horse mackerel (Trachurus mediterraneus) from the Black Sea (pages 230–233) N. Kasapoglu and E. Duzgunes Abstract Full Article (HTML) PDF(225K) References

Karyotype of mullet Liza abu Heckel, 1846 (Pisces: Mugilidae) from the Tigris River, Turkey (pages 234–236) D. Değer, E. Ünlü and M. Gaffaroğlu Abstract Full Article (HTML) PDF(201K) References

On the occurrence of the clearhead icefish, Protosalanx hyaloranius (Salmoniformes: Salangidae), in the Songhua River, the largest tributary of Amur River (pages 237–238) F. J. Tang, W. Liu, J. L. Wang and A. Brown Abstract Full Article (HTML) PDF(141K) References

Motivation and time of day affect decision-making for substratum granulometry in the Nile tilapia Oreochromis niloticus (pages 239–241) R. H. A. Freitas and G. L. Volpato Abstract Full Article (HTML) PDF(235K) References

A record of sharp-tail mola, Masturus lanceolatus (Liénard, 1840) (Molidae) in the Sea of Oman (pages 242–244) L. A. Jawad, J. M. Al-Mamry and L. H. Al-Kharusi Abstract Full Article (HTML) PDF(146K) References

New record of the antenna codlet, Bregmaceros atlanticus Goode and Bean, 1886 (Gadiformes: Bregmacerotidae), from the northern Aegean Sea (Izmir Bay, Turkey) (pages 245–246) İ. Aydin and O. Akyol Abstract Full Article (HTML) PDF(177K) References

Fin ray morphometrics for swordfish (Xiphias gladius L. 1758) from the Atlantic Ocean (pages 247–251) A. Garcia and M. N. Santos Abstract Full Article (HTML) PDF(677K) References

Austrolebias arachan Loureiro, Azpelicueta & García 2004 (Cyprinodonfiformes: Rivulidae) in Rio Grande do Sul, Brazil: occurrence, length–weight relationships and condition factor (pages 252–256) L. E. K. Lanés, Â. C. Gonçalves and M. V. Volcan Abstract Full Article (HTML) PDF(371K) References

Occurrence of the alien invasive loach Misgurnus anguillicaudatus in the Iguaçu River basin in southern Brazil: a note of concern (pages 257–259) V. Abilhoa, H. Bornatowski and J. R. S. Vitule Abstract Full Article (HTML) PDF(193K) References

Occurrence of Schedophilus ovalis (Cuvier, 1833) (Osteichthyes: Centrolophidae) in the North-Eastern Mediterranean, Turkey (pages 260–262) D. Erguden, D. Yaglioglu and C. Turan Abstract Full Article (HTML) PDF(204K) References

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Record of the live sharksucker, Echeneis naucrates Linnaeus, 1758 (Osteichthyes: Echeneidae), from the northern Aegean Sea (Izmir Bay, Turkey) (pages 263– 264) O. Akyol Abstract Full Article (HTML) PDF(139K) References

Effects of a saponin fraction extracted from Trigonella foenum-graecum L. and two commercially available saponins on sex ratio and gonad histology of Nile tilapa fry, Oreochromis niloticus (L.) (pages 265–267) T. Stadtlander, B. Levavi-Sivan, Z. Kerem, H. Dweik, M. Qutob, S. Abu-Lafi, G. Francis, U. Focken and K. Becker Abstract Full Article (HTML) PDF(157K) References

Morphological and molecular differentiation of smooth-hound sharks (Genus Mustelus, Family Triakidae) from the Gulf of California (pages 268–270) J. C. Pérez-Jiménez, A. Rocha-Olivares and O. Sosa-Nishizaki Abstract Full Article (HTML) PDF(163K) References

Timing of maturation of a tropical eel, Anguilla bicolor bicolor in Malaysia (pages 271–273) T. Arai and N. Chino Abstract Full Article (HTML) PDF(163K) References

Length-weight relationship and seasonal effects of the Summer Monsoon on condition factor of Terapon jarbua (Forsskål, 1775) from the wider Gulf of Aden including Socotra Island (pages 274–277) E. Lavergne, U. Zajonz and L. Sellin Abstract Full Article (HTML) PDF(292K) References

Sequence variation in mitochondrial ATPsynthase subunit 6 & 8 and nuclear genes ITS1 and ITS2 in 17 cyprinid species (pages 278–280) M. H. Demandt Abstract Full Article (HTML) PDF(199K) References

Length–weight relationships of five fish species from the streams of Maoershan National Forest Park, Heilongjiang, China (pages 281–282) M. H. Liu, R. M. Wang, Z. J. Meng and H. X. Yu Abstract Full Article (HTML) PDF(131K) References

Length–weight and length–length relationships for five fish species from Kashmir Valley (pages 283–284) Mohammad Afzal Khan and Sabah Abstract Full Article (HTML) PDF(138K) References

Length–weight relationships of freshwater fishes from the western part of Anatolia, Turkey (pages 285–287) Ö. Gaygusuz, H. Aydın, Ö. Emiroğlu, N. Top, Z. Dorak, Ç. G. Gaygusuz, S. Başkurt and A. S. Tarkan Abstract Full Article (HTML) PDF(155K) References

Length–weight relationships of 10 fish species collected from stake traps in the muddy shores of the inter-tidal zone of Bandar Abbas city, Persian Gulf, Iran (pages 288–289) P. Zare, M. Naderi and E. Azvar

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Abstract Full Article (HTML) PDF(132K) References

Length-weight relationships of Turcinoemacheilus kosswigi Bănărescu and Nalbant, 1964 (Teleostei:Nemacheilidae) in southwestern Iran and its relation to habitat structure (pages 290–291) H. R. Esmaeili, G. Sayyadzadeh, S. Ghasemian, S. Mirghiyasi, R. Zamaneian Nejad and J. Freyhof Abstract Full Article (HTML) PDF(147K) References

Weight-length relationships for five fish species from a temperate coastal lagoon of southern Europe (pages 292–293) R. P. Vieira, L. Bentes, P. Monteiro, J. Ribeiro, K. Erzini and J. M. S. Gonçalves Abstract Full Article (HTML) PDF(138K) References

Change in allometric length–weight relationship of Salmo trutta at emergence from the redd (pages 294–296) N. Nika Abstract Full Article (HTML) PDF(203K) References

Length-weight relationships of Rutilus species from fifteen Greek lakes (pages 297–298) M. Tsoumani, A. P. Apostolidis and I. D. Leonardos Abstract Full Article (HTML) PDF(134K) References

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VOLUME114, PART 1, JANUARY 2013 Website

Research articles

Supramolecular reactive sulphur nanoparticles: a novel and efficient antimicrobial agent (pages 1–10) S. Roy Choudhury and A. Goswami Abstract Full Article (HTML) PDF(491K) References

Role of glutamate metabolism in bacterial responses towards acid and other stresses (pages 11–24) C. Feehily and K.A.G. Karatzas Abstract Full Article (HTML) PDF(414K) References

Effects of silver nanoparticles on microbial growth dynamics (pages 25–35) V.J. Schacht, L.V. Neumann, S.K. Sandhi, L. Chen, T. Henning, P.J. Klar, K. Theophel, S. Schnell and M. Bunge Abstract Full Article (HTML) PDF(1406K) References

Photoinactivation of Escherichia coli (SURE2) without intracellular uptake of the photosensitizer (pages 36–43) A. Preuß, L. Zeugner, S. Hackbarth, M.A.F. Faustino, M.G.P.M.S. Neves, J.A.S. Cavaleiro and B. Roeder Abstract Full Article (HTML) PDF(855K) References

Antibiotic resistant Staphylococcus aureus in hospital wastewaters and sewage treatment plants with special reference to methicillin-resistant Staphylococcus aureus (MRSA) (pages 44–54) J.M. Thompson, A. Gündoğdu, H.M. Stratton and M. Katouli Abstract Full Article (HTML) PDF(309K) References

Biotransformation/Biodegradation/Bioremediation

Biostimulation to identify microbial communities involved in methane generation in shallow, kerogen-rich shales (pages 55–70) M. Meslé, C. Périot, G. Dromart and P. Oger Abstract Full Article (HTML) PDF(912K) References

Hydrocarbon-degrading potential of microbial communities from Arctic plants (pages 71–83) O. Ferrera-Rodríguez, C.W. Greer, D. Juck, L.L. Consaul, E. Martínez-Romero and L.G. Whyte Abstract Full Article (HTML) PDF(237K) References Supporting Information

Novel route of tannic acid biotransformation and their effect on major biopolymer synthesis in Azotobacter sp. SSB81 (pages 84–95) S.S. Gauri, S.M. Mandal, S. Atta, S. Dey and B.R. Pati Abstract Full Article (HTML) PDF(965K) References Supporting Information

Biotechnology

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Potential of marine lactic acid bacteria to ferment Sargassum sp. for enhanced anticoagulant and antioxidant properties (pages 96–107) P. Shobharani, P.M. Halami and N.M. Sachindra Abstract Full Article (HTML) PDF(1009K) References

Raw starch–degrading α-amylase from Bacillus aquimaris MKSC 6.2: isolation and expression of the gene, bioinformatics and biochemical characterization of the recombinant enzyme (pages 108–120) F. Puspasari, O.K. Radjasa, A.S. Noer, Z. Nurachman, Y.M. Syah, M. van der Maarel, L. Dijkhuizen, Š. Janeček and D. Natalia Abstract Full Article (HTML) PDF(2448K) References

Molecular cloning, characterization and comparison of bile salt hydrolases from Lactobacillus johnsonii PF01 (pages 121–133) J.P. Chae, V.D. Valeriano, G.-B. Kim and D.-K. Kang Abstract Full Article (HTML) PDF(1669K) References Request Permissions

The effect of urea and ammonia treatments on the survival of Salmonella spp. and Yersinia enterocolitica in pig slurry (pages 134–140) D.J. Bolton, C. Ivory and D.A. McDowell Abstract Full Article (HTML) PDF(112K) References

Estimation of metagenome size and structure in an experimental soil microbiota from low coverage next-generation sequence data (pages 141–151) T. Frisli, T.H.A. Haverkamp, K.S. Jakobsen, N.Chr. Stenseth and K. Rudi Abstract Full Article (HTML) PDF(778K) References Supporting Information

Food/Beverage Microbiology

Fitting distributions to microbial contamination data collected with an unequal probability sampling design (pages 152–160) M.S. Williams, E.D. Ebel and Y. Cao Abstract Full Article (HTML) PDF(2010K) References

Microbial interactions associated with secondary cucumber fermentation (pages 161–172) W. Franco and I.M. Pérez-Díaz Abstract Full Article (HTML) PDF(246K) References

New insights in mechanisms of bacterial inactivation by carvacrol (pages 173– 185) A. Ait-Ouazzou, L. Espina, T.K. Gelaw, S. de Lamo-Castellví, R. Pagán and D. García-Gonzalo Abstract Full Article (HTML) PDF(603K) References

Effects of a pulsed light-induced stress on Enterococcus faecalis (pages 186–195) S. Massier, E. Bouffartigues, A. Rincé, O. Maillot, M.G.J. Feuilloley, N. Orange and S. Chevalier Abstract Full Article (HTML) PDF(444K) References

Plant Microbiology/Plant Health Microbiology

Arthrobotrys oligospora-mediated biological control of diseases of tomato (Lycopersicon esculentum Mill.) caused by Meloidogyne incognita and Rhizoctonia solani (pages 196–208)

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U.B. Singh, A. Sahu, N. Sahu, R.K. Singh, S. Renu, D.P. Singh, M.C. Manna, B.K. Sarma, H.B. Singh and K.P. Singh Abstract Full Article (HTML) PDF(1427K) References

Biocontrol potential of phylloplane bacterium Ochrobactrum anthropi BMO-111 against blister blight disease of tea (pages 209–218) K. Sowndhararajan, S. Marimuthu and S. Manian Abstract Full Article (HTML) PDF(339K) References

Formulation development of the deleterious rhizobacterium Pseudomonas trivialis X33d for biocontrol of brome (Bromus diandrus) in durum wheat (pages 219–228) D. Mejri, E. Gamalero and T. Souissi Abstract Full Article (HTML) PDF(236K) References

Pre-and Probiotics/Intestinal Microbiology

Technological properties and probiotic potential of Enterococcus faecium strains isolated from cow milk (pages 229–241) K. Banwo, A. Sanni and H. Tan Abstract Full Article (HTML) PDF(552K) References

Public Health Microbiology

Growth and survival parameter estimates and relation to RpoS levels in serotype O157:H7 and non-O157 Shiga toxin-producing Escherichia coli (pages 242–255) T.D. Mand, D. Döpfer, B. Ingham, C. Ané and C.W. Kaspar Abstract Full Article (HTML) PDF(650K) References Supporting Information

Hydrodynamic shear stress to remove Listeria monocytogenes biofilms from stainless steel and polytetrafluoroethylene surfaces (pages 256–265) M.S. Gião and C.W. Keevil Abstract Full Article (HTML) PDF(503K) References

Comparison of the action of different proteases on virulence properties related to the staphylococcal surface (pages 266–277) M. Artini, R. Papa, G.L. Scoarughi, E. Galano, G. Barbato, P. Pucci and L. Selan Abstract Full Article (HTML) PDF(456K) References

Factors driving the circulation and possible expansion of Crimean–Congo haemorrhagic fever virus in the western Palearctic (pages 278–286) A. Estrada-Peña, F. Ruiz-Fons, P. Acevedo, C. Gortazar and J. de la Fuente Article first published online: 7 NOV 2012 | DOI: 10.1111/jam.12039 Abstract Full Article (HTML) PDF(862K) References Supporting Information

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VOLUME114, PART 2, FEBRUARY 2013 Website

Research articles

Review

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Types of cell death and methods of their detection in yeast Saccharomyces cerevisiae (pages 287–298) D.M. Wloch-Salamon and A.E. Bem Abstract Full Article (HTML) PDF(136K) References

Animal Microbiology/Animal Health Microbiology

Screening and characterization of LAB-produced bacteriocin-like substances from the intestine of grey mullet (Mugil cephalus L.) as potential biocontrol agents in aquaculture (pages 299–307) Y.-H. Lin, Y.-S. Chen, H.-C. Wu, S.-F. Pan, B. Yu, C.-M. Chiang, C.-M. Chiu and F. Yanagida Abstract Full Article (HTML) PDF(259K) References

Development of a feed additive to reduce caecal Campylobacter jejuni in broilers at slaughter age: from in vitro to in vivo, a proof of concept (pages 308–317) E. Grilli, F. Vitari, C. Domeneghini, A. Palmonari, G. Tosi, P. Fantinati, P. Massi and A. Piva Abstract Full Article (HTML) PDF(369K) References

Effects of antimicrobials fed as dietary growth promoters on faecal shedding of Campylobacter,Salmonella and shiga-toxin producing Escherichia coli in swine (pages 318–328) J.E. Wells, N. Kalchayanand, E.D. Berry and W.T. Oliver Abstract Full Article (HTML) PDF(425K) References

Phellinus baumii extract influences pathogenesis of Brucella abortus in phagocyte by disrupting the phagocytic and intracellular trafficking pathway (pages 329– 338) J.J. Lee, D.H. Kim, D.G. Kim, H.J. Lee, W. Min, M.H. Rhee, B.S. Yun and S. Kim Abstract Full Article (HTML) PDF(704K) References

Biotransformation/Biodegradation/Bioremediation

A systematic insight into a single-stage deammonification process operated in granular sludge reactor with high-loaded reject-water: characterization and quantification of microbiological community (pages 339–351) S.T. Liu, H. Horn and E. Müller Abstract Full Article (HTML) PDF(900K) References

Biotechnology

Cloning, expression and decoding of the cold adaptation of a new widely represented thermolabile subtilisin-like protease (pages 352–363) J.P. Acevedo, V. Rodriguez, M. Saavedra, M. Muñoz, O. Salazar, J.A. Asenjo and B.A. Andrews Abstract Full Article (HTML) PDF(469K) References Supporting Information

A fed-batch based cultivation mode in Escherichia coli results in improved specific activity of a novel chimeric-truncated form of tissue plasminogen activator (pages 364–372) F. Mahboudi, F. Barkhordari, R.M. Godarzi, S. Enayati and F. Davami Abstract Full Article (HTML) PDF(370K) References

Production and characterization of rhamnolipid biosurfactant from waste frying coconut oil using a novel Pseudomonas aeruginosa D (pages 373–383) S. George and K. Jayachandran

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Abstract Full Article (HTML) PDF(322K) References

Polyhydroxyalkanoate biosynthesis and simplified polymer recovery by a novel moderately halophilic bacterium isolated from hypersaline microbial mats (pages 384–395) D.-N. Rathi, H.G. Amir, R.M.M. Abed, A. Kosugi, T. Arai, O. Sulaiman, R. Hashim and K. Sudesh Abstract Full Article (HTML) PDF(818K) References Supporting Information

Environmental Microbiology

The role of the exosporium in the environmental distribution of anthrax (pages 396–403) G. Williams, E. Linley, R. Nicholas and L. Baillie Article first published online: 21 DEC 2012 | DOI: 10.1111/jam.12034 Abstract Full Article (HTML) PDF(306K) References

Food/Beverage Microbiology

Evaluation of the microbial community in industrial rye sourdough upon continuous back–slopping propagation revealed Lactobacillus helveticus as the dominant species (pages 404–412) E. Viiard, A. Mihhalevski, T. Rühka, T. Paalme and I. Sarand Abstract Full Article (HTML) PDF(209K) References

Characterization of EstCOo8 and EstC34, intracellular esterases, from the wine- associated lactic acid bacteria Oenococcus oeni and Lactobacillus hilgardii (pages 413–422) K.M. Sumby, P.R. Grbin and V. Jiranek Abstract Full Article (HTML) PDF(354K) References

Methods

Rapid detection and respirometric profiling of aerobic bacteria on panels of selective media (pages 423–432) G. Jasionek, V. Ogurtsov and D. Papkovsky Abstract Full Article (HTML) PDF(1052K) References Supporting Information

Long PCR-RFLP of 16S-ITS-23S rRNA genes: a high-resolution molecular tool for bacterial genotyping (pages 433–447) Y.H. Zeng, M. Koblížek, Y.X. Li, Y.P. Liu, F.Y. Feng, J.D. Ji, J.C. Jian and Z.H. Wu Abstract Full Article (HTML) PDF(1941K) References Supporting Information

Development of a groEL gene–based species-specific multiplex polymerase chain reaction assay for simultaneous detection of Vibrio cholerae, Vibrio parahaemolyticus and Vibrio vulnificus (pages 448–456) M.T. Hossain, E.-Y. Kim, Y.-R. Kim, D.-G. Kim and I.-S. Kong Abstract Full Article (HTML) PDF(306K) References

Design of a single-tube, endpoint, linear-after-the-exponential-PCR assay for 17 pathogens associated with sepsis (pages 457–469) L.M. Rice, A.H. Reis Jr, B. Ronish, R.K. Carver-Brown, J.W. Czajka, N. Gentile, G. Kost and L.J. Wangh Abstract Full Article (HTML) PDF(913K) References

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Physiology

Serratia entomophilabet gene induction and the impact of glycine betaine accumulation on desiccation tolerance (pages 470–481) T.R. Sheen, M. O'Callaghan, D.J. Smalley, C.W. Ronson and M.R.H. Hurst Abstract Full Article (HTML) PDF(615K) References Supporting Information

Exogenous ergosterol protects Saccharomyces cerevisiae from d-limonene stress (pages 482–491) J. Liu, Y. Zhu, G. Du, J. Zhou and J. Chen Abstract Full Article (HTML) PDF(274K) References

A subset of histamine receptor ligands improve thermotolerance of the yeast Saccharomyces cerevisiae (pages 492–501) K. Papamichael, B. Delitheos and E. Tiligada Abstract Full Article (HTML) PDF(434K) References

Plant Microbiology/Plant Health Microbiology

Development of multiplex real-time PCR for simultaneous detection of three Potyviruses in tobacco plants (pages 502–508) J. Dai, H. Peng, W. Chen, J. Cheng and Y. Wu Abstract Full Article (HTML) PDF(302K) References

Investigation into immunological responses against a native recombinant CTB whole-cell Vibrio cholerae vaccine in a rabbit model (pages 509–515) M. Boustanshenas, B. Bakhshi and M. Ghorbani Abstract Full Article (HTML) PDF(554K) References

Impact of weather conditions on Escherichia coli accumulation in oysters of the Thau lagoon (the Mediterranean, France) (pages 516–525) V. Derolez, D. Soudant, A. Fiandrino, L. Cesmat and O. Serais Abstract Full Article (HTML) PDF(441K) References

Growth optimization of Lactobacillus rhamnosus FTDC 8313 and the production of putative dermal bioactives in the presence of manganese and magnesium ions (pages 526–535) L.-C. Lew, M.-T. Liong and C.-Y. Gan Abstract Full Article (HTML) PDF(467K) References

A nitric oxide-releasing solution as a potential treatment for fungi associated with tinea pedis (pages 536–544) G. Regev-Shoshani, A. Crowe and C.C. Miller Abstract Full Article (HTML) PDF(332K) References

Occurrence and reduction of human viruses, F-specific RNA coliphage genogroups and microbial indicators at a full-scale wastewater treatment plant in Japan (pages 545–554) A. Hata, M. Kitajima and H. Katayama Abstract Full Article (HTML) PDF(203K) References Supporting Information

Prevalence and antimicrobial resistance of Enterococcus species of food animal origin from Beijing and Shandong Province, China (pages 555–563) Y. Liu, K. Liu, J. Lai, C. Wu, J. Shen and Y. Wang Abstract Full Article (HTML) PDF(121K) References

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Detection of multiple waterborne pathogens using microsequencing arrays (pages 564–573) N.E. Brinkman, R. Francisco, T.L. Nichols, D. Robinson, F.W. Schaefer III, R.P. Schaudies and E.N. Villegas Abstract Full Article (HTML) PDF(284K) References Supporting Information

A predictive model of Vibrio cholerae for combined temperature and organic nutrient in aquatic environments (pages 574–585) S. Fu, J. Shen, Y. Liu and K. Chen Abstract Full Article (HTML) PDF(296K) References

Verification of monoplex and multiplex linear-after-the-exponential PCR gene- specific sepsis assays using clinical isolates (pages 586–594) N.L. Gentile, A.M. Dillier, G.V. Williams, J. Ackers, A.H. Reis Jr, L.M. Rice, L.J. Wangh, J.W. Czajka and G.J. Kost Abstract Full Article (HTML) PDF(3570K) References

Serotypes and virulence profiles of atypical enteropathogenic Escherichia coli (EPEC) isolated from bovine farms and abattoirs (pages 595–603) Á. Monaghan, B. Byrne, S. Fanning, T. Sweeney, D. McDowell and D.J. Bolton Abstract Full Article (HTML) PDF(128K) References

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VOLUME 25, PART 1, FEBRUARY 2013 Website

Research articles

Effect of phlorotannin-rich extracts of Ascophyllum nodosum and Himanthalia elongata (Phaeophyceae) on cellular oxidative markers in human HepG2 cells Benoît Quéguineur, Luis Goya, Sonia Ramos… Pages 1-11 Download PDF (429KB) View Article

Phylogenetic relationship of Kappaphycus Doty and Eucheuma J. Agardh (Solieriaceae, Rhodophyta) in Malaysia Ji Tan, Phaik-Eem Lim, Siew-Moi Phang Pages 13-29 Download PDF (901KB) View Article

Biological control of Stephanodiscus hantzschii (Bacillariophyceae) blooms in a field mesocosm by the immobilized algicidal bacterium Pseudomonas fluorescens HYK0210-SK09 Seung Won Jung, Yoon-Ho Kang, Seung Ho Baek, Dhongil Lim… Pages 41-50 Download PDF (442KB) View Article

The removal of ρ-chlorophenol in aqueous cultures with free and alginate- immobilized cells of the microalga Tetraselmis suecica Hamid Forootanfar, Mojtaba Shakibaie, Zahra Bagherzadeh… Pages 51-57 Download PDF (248KB) View Article

Effect of temperature on the development of Saccharina japonica gametophytes Linan Zhang, Cuiju Cui, Xiaojie Li, Zhuangzhi Zhang… Pages 261-267 Download PDF (255KB) View Article

Effect of phosphorus on lipid accumulation in freshwater microalga Chlorella sp. Kehong Liang, Qinghua Zhang, Ming Gu, Wei Cong Pages 311-318 Download PDF (267KB) View Article

Seasonal variation in phenolic composition, antibacterial and antioxidant activities of Ulva rigida (Chlorophyta) and assessment of antiacetylcholinesterase potential Mohamed Trigui, Leila Gasmi, Imen Zouari, Slim Tounsi Pages 319-328 Download PDF (996KB) View Article

Small water clusters stimulate microcystin biosynthesis in cyanobacterial Microcystis aeruginosa Jing Wang, Feng Zhao, Baihua Chen, Yanni Li, Ping Na… Pages 329-336 Download PDF (395KB) View Article

Effective DNA extraction method for fragment analysis using capillary sequencer of the kelp, Saccharina Takashi Maeda, Tadashi Kawai, Masahiro Nakaoka… Pages 337-347 Download PDF (551KB) View Article

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VOLUME 3, PART 6, OCTOBER 2012 Website

Research articles

Photobacteriosis Exchange between Wild and Farmed Fish in the Mediterranean Area Monique Mancuso

What Future for Organic Aquaculture? Antonino Nizza

Effect of Feeding Enriched Formulated Diet and Live Feed on Growth, Survival and Fatty Acid Profile of Deccan Mahseer, Tor Khudree (Sykes) First Feeding Fry Soibam Khogen Singh, Upasana Mishra, Sibnarayan Dam Roy, Chadha NK and Venkateshwarlu G

Diketopiperazines Produced by an Bacillus Species Inhibits Vibrio Parahaemolyticus Yanett Leyton, Jorge Borquez, José Darias, Mercedes Cueto, Díaz-Marrero AR and Carlos Riquelme

Effect of Dietary Nutrient Sources on Nitrogen and Phosphorus Loading from Culture of Tiger Shrimp (Penaeus monodon) Preetha VV, Belayneh A, Palavesam A, Immanuel G and Tadesse Z

Identification and Typing of Aeromonas Hydrophila through 16S rDNA-PCR Fingerprinting Agniswar Sarkar, Mousumi Saha and Pranab Roy

Immunomodulation of Nile Tilapia, Oreochromis niloticus, by Nigella sativa and Bacillus subtilis Ahmad A Elkamel and Gamal M Mosaad Prophenoloxidase and Immune Indices of Indian White Shrimp Fenneropenaeus Indicus Jeyachandran Sivakamavalli, Perumal Rajakumaran and Baskaralingam Vaseeharan*

Optimization of Feeding Efficiency in Semi-Intensive Farming System for Sustainable and Cost Effective Production of Penaeus Monodon Fabricius Hasan BMA, Guha B and Datta S

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VOLUME 3, PART 7, NOVEMBER 2012 Website

Research articles

Preparation of Added Value Byproducts from the Waste Material of Tilapia (Oreochromis niloticus) Processing Maria Lúcia G. Monteiro, Eliane T. Mársico, Izolda Martins Viriato, José Marcelino Lima de Souza and Carlos A. Conte Júnior

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Utilization of Cottonseed Meal Supplemented with Iron for Detoxification of Gossypol in Nile Tilapia, Broodstock and their Impact on the Hatchability of their Progenies Magdy M. Gaber, Magdy M. Elhalfawy and Amal M. Ramadan

Effects of Stocking Density and Water Exchange Rates on Growth Performance of Tiger Shrimp, Penaeus Semisulcatus Cultured in Earthen Ponds Gaber MM, Omar EA, Abdel-Rahim M, Nour AM, Zaki MA and Srour TM

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VOLUME 3, PART 8, DECEMBER 2012 Website

Research articles

Nitrogen Flow in a Recirculating Operation of Litopenaeus vannamei Maturation in Ecuador Intriago P, Espinoza J, Cabrera J, Sanchez A and Navarrete A

Aquatic Weed as Potential Feed for Mozambique tilapia, Oreochromis mossambicus Mukti Pada Bag, Subhash Chandra Mahapatra and Pavuluri Srinivasa Rao

Growth, Reproduction and Sex Ratios in Oreochromis Andersonii (Castelnau, 1861) Fed with Varying Levels of 17α-Methyl Testosterone Kefi AS, Kang’ombe J, Kassam D and Katongo C

The Effects of Eyestalk Ablation on the Reproductive and Immune Function of Female Macrobrachium americanum Aguiñaga-Cruz Jazmín Asusena, Sainz-Hernández Juan Carlos, Fierro-Coronado Jesús Arturo and Diarte- Plata Genaro

Effects of Feeding Enriched Artemia Fransiscana with HUFA, Vitamin C and E on Growth Performance, Survival and Stress Resistance of Yellowfin Seabream Larvae Mohammad Nabi Adloo, Abbas Matinfar and Iman Sourinezhad

Closed Re-Circulating System for Water Quality Control of Pacific White Shrimp (Penaeus vannamei) Postlarvae Co-Cultured With Immobilized Spirulina Mat Siriphorn Sombatjinda, Chalermraj Wantawin, Boonsirm Withya Chumnarnkul, Somkiet Techkarn Janaruk, and Marasri Ruengjit Chatchawalya

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VOLUME 439, JANUARY 2013 Website

Research articles

This issue is In Progress but contains articles that are final and fully citable.

Consistent deleterious effects of vermetid gastropods on coral performance Jeffrey S. Shima, Nicole E. Phillips, Craig W. Osenberg Show preview | PDF (665 K) | Supplementary content | Related articles | Related reference work articles Highlights ► Vermetid gastropods are poorly studied members of coral communities. ► Hierarchical field experiments confirm deleterious effects of vermetids on corals. ► Effects of vermetids were consistent across six sites and three putative genotypes. ► Results suggest coral populations may be universally prone to vermetid effects.

Economies of scaling: More evidence that allometry of metabolism is linked to activity, metabolic rate and habitat Nicholas Carey, Julia D. Sigwart, Jeffrey G. Richards Show preview | PDF (434 K) | Related articles | Related reference work articles Highlights ► We examine allometric scaling of metabolism in 6 species of chiton through ontogeny. ► The interspecific scaling exponent is not significantly different from 0.75. ► But intraspecific scaling varies significantly and can be correlated to habitat. ► Intraspecific scaling values also varied significantly from common theorized values. ► Our data support the metabolic level boundaries hypothesis of metabolic scaling.

Mitochondrial DNA reveals Pleistocenic colonisation of the Mediterranean by loggerhead turtles (Caretta caretta) Marcel Clusa, Carlos Carreras, Marta Pascual, Andreas Demetropoulos, Dimitris Margaritoulis, Alan F. Rees, Abdulmaula A. Hamza, Mona Khalil, Monica Aureggi, Yaniv Levy, Ogüz Türkozan, Adolfo Marco, Alex Aguilar, Luis Cardona Show preview | PDF (582 K) | Related articles | Related reference work articles Highlights ► Genetic structuring for loggerhead turtles exists within the Mediterranean basin. ► Four differentiated genetic groups can be defined in the Mediterranean. ► Colonisation of the Mediterranean from the Atlantic dates from the Pleistocene. ► Libya hosts the oldest population in the basin, colonised ca. 65,000 years ago (20,000-200,000). ► Libya, and likely Eastern Turkey and Western Greece, appeared as glacial refugia.

Strong preference for decapod prey by the western rock lobster Panulirus cygnus Jean-Philippe Dumas, Timothy J. Langlois, K. Robert Clarke, Kris I. Waddington Show preview | PDF (431 K) | Related articles | Related reference work articles Highlights ► We investigated prey preferences of juvenile and adult western rock lobsters. ► We investigated handling time and diet quality of prey to explain prey choice. ► Large lobsters chose mussels and crabs more frequently than gastropods and urchins. ► Juvenile and medium sized mature lobsters preferred crabs over other prey items. ► Lobsters' choice in prey may be explained by handling time rather than diet quality.

Coral physiological adaptations to air exposure: Heat shock and oxidative stress responses in Veretillum cynomorium

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Tatiana Teixeira, Mário Diniz, Ricardo Calado, Rui Rosa Show preview | PDF (920 K) | Related articles | Related reference work articles Highlights ► Investigate the physiological tolerance of an octocoral to the intertidal environment ► Increase in heat shock expression (HSC70/HSP70) during emersion ► No peroxidase activity, but an increase in CAT and GST activity during air exposure ► HSP, CAT and GST constitute an integrated response during oxygen-restricted periods. ► First evidence of such preparation to post-hypoxic free radical damage in octocorals

Preservation of seagrass clonal integration buffers against burial stress F. Tuya, F. Espino, J. Terrados Show preview | PDF (472 K) | Related articles | Related reference work articles Highlights ► Seagrass performance is affected by burial. ► Preservation of the clonal integration of C. nodosa buffered against burial stress. ► Clonal integration may allow seagrasses to maintain function under stressful events.

Microbial carbon and nitrogen production under experimental conditions combining warming with increased ultraviolet-B radiation in Mediterranean coastal waters Eric Fouilland, Behzad Mostajir, Jean-Pascal Torréton, Marc Bouvy, Patrice Got, Emilie Le Floc'h, Jean Nouguier, Bruno Charrière, Richard Sempéré, Francesca Vidussi Show preview | PDF (527 K) | Related articles | Related reference work articles Highlights ► The effect of + 3 °C and + 20% UVBR was investigated during a mesocosm experiment. ► Warming was the dominant effect inducing a shift toward autotrophy. ► Warming led to an efficient trophic transfer and settling of newly produced biomass.

A common garden experiment on capelin (Mallotus villosus) early life history stages to examine use of beach and deep-water spawning habitats Paulette M. Penton, Gail K. Davoren Show preview | PDF (545 K) | Related articles | Related reference work articles Highlights ► We use a common garden experiment design to examine use of two spawning habitats. ► Artificially fertilized eggs were incubated at 4, 7 and 12 °C. ► No evidence of adaptation to thermal conditions in early life history stages ► High quality eggs and larvae are produced at 4–7 °C.

Variable effects of increased temperature on a trematode parasite and its intertidal hosts Kum C. Shim, Janet Koprivnikar, Mark R. Forbes Show preview | PDF (777 K) | Related articles | Related reference work articles Highlights ► We examine temperature influences on infectivity and effects of a marine parasite. ► Long-term elevated temperature did not increase emergence of trematode parasites. ► High temperature did not increase amphipod host susceptibility to infection. ► Infected amphipod and snail hosts were not more affected by high temperatures. ► High temperatures within natural ranges may not affect host–parasite interactions.

The influence of density on adults and juveniles of the estuarine fish, the sheepshead minnow (Cyprinodon variegatus) S. Raimondo, H. Rutter, B.L. Hemmer, C.R. Jackson, G.M. Cripe Show preview | PDF (349 K) | Related articles | Related reference work articles Highlights

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► Impacts of high density on an estuarine fish was assessed in laboratory studies. ► Endpoints previously unmeasured in density studies were impacted by density. ► Sexual maturation was affected by adult density independent of sex and size. ► Reduced fecundity in high density was driven by interference competition. ► Survival and growth were tolerant to extremely high densities.

Biotic resistance to the infiltration of natural benthic habitats: Examining the role of predation in the distribution of the invasive ascidian Botrylloides violaceus Christina Simkanin, John F. Dower, Natalia Filip, Glen Jamieson, Thomas W. Therriault Show preview | PDF (517 K) | Related articles | Related reference work articles Highlights ► We tested predation pressure on B. violaceus in man-made and natural habitats. ► Native benthic predators reduced survival in both habitat types. ► Juvenile and adult ascidians were preyed on by native benthic predators. ► Biotic resistance may limit the infiltration of natural rocky reefs by B. violaceus.

Maintenance, feeding and growth of Carybdea marsupialis (Cnidaria: Cubozoa) in the laboratory Melissa J. Acevedo, Verónica L. Fuentes, Alejandro Olariaga, Antonio Canepa, Mar B. Belmar, Cesar Bordehore, Albert Calbet Show preview | PDF (738 K) | Related articles | Related reference work articles Highlights ► An aquarium for C. marsupialis should have the right circulation and lightning. ► There are some differences in the maintenance of the different stages. ► Provide abundantly different types of preys to the cubomedusae. ► Knowledge gained from experiments could be extrapolated to the marine environment.

Born to kill: Predatory functional responses of the littoral amphipod Echinogammarus marinus Leach throughout its life history Mhairi E. Alexander, Jaimie T.A. Dick, Nessa E. O'Connor Show preview | PDF (498 K) | Related articles | Related reference work articles Highlights ► Field evidence that amphipod Echinogammarus marinus is predatory ► Juvenile, sub-adult and adult E. marinus feed on isopod Jaera nordmanni. ► Predatory functional responses were Type II at each life history stage. ► Large adult E. marinus also consumed smallest prey with Type II responses. ► Type II functional responses evident even when habitat was heterogeneous.

Effects of exposure duration on the response of Pocillopora damicornis larvae to elevated temperature and high pCO2 V.R. Cumbo, T.Y. Fan, P.J. Edmunds Show preview | PDF (291 K) | Related articles | Related reference work articles Highlights ► We tested the effect of incubation duration on the response of larvae to temperature and pCO2. ► The effects of temperature and pCO2 on larvae can be evaluated in short experiments (< 5 d). ► The effects of temperature and pCO2 on larval survivorship emerge only after 4-5 d incubations. ► Long pelagic larval duration may be associated with susceptibility to high temperature and pCO2.

Effect of salinity and substrate grain size on larval settlement of the asari clam (Manila clam, Ruditapes philippinarum) Naoaki Tezuka, Masaei Kanematsu, Kimio Asami, Kazutaka Sakiyama, Masami Hamaguchi, Hironori Usuki Show preview | PDF (249 K) | Related articles | Related reference work articles Highlights Aquaculture Journals Page: 120 of 167

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► Effects of environmental factors on clam larval settlement were tested. ► Larval settlement increased as the salinity decreased until salinity reached 13. ► Larvae have the ability to settle on a wide range of substrate grain sizes. ► Results aid in understanding of the variation in larval settlement in nature.

Physiological responses to nitrogen deficiency and resupply in different blade portions of Pyropia yezoensis f. narawaensis (Bangiales, Rhodophyta) Kyosuke Niwa, Kazuhiro Harada Show preview | PDF (1109 K) | Related articles | Related reference work articles Highlights ► Physiological responses to nitrogen (N) deficiency and resupply in Pyropia. ► Blade bleaching is faster in the upper portion than in the lower portion. ► The faster bleaching caused by faster cell division and more N deficiency. ► Pigment recovery is faster in the upper portion, despite the faster cell division. ► Higher N uptake in the upper portion supports faster recovery of bleaching.

Foraging effects of cownose rays (Rhinoptera bonasus) along barrier islands of the northern Gulf of Mexico Matthew Joseph Ajemian, Sean Paul Powers Show preview | PDF (1364 K) | Related articles | Related reference work articles Highlights ► We quantify the foraging effects of cownose rays on natural and manipulated prey. ► Field experiments on sandflats indicate cownose rays have no detectable impacts. ► Smaller predators appear to more negatively impact shellfish along barrier islands. ► We suggest potential latitudinal variation in the foraging impacts of cownose rays.

Possible involvement of glycolipids in lectin-mediated cellular transformation of symbiotic microalgae in corals Mitsuru Jimbo, Yuya Suda, Kazuhiko Koike, Sachiko Nakamura-Tsuruta, Junko Kominami, Masugu Kamei, Jun Hirabayashi, Ryuichi Sakai, Hisao Kamiya Show preview | PDF (912 K) | Related articles | Related reference work articles Highlights ► The coral lectin SLL-2 induces transformation of Symbiodinium to its coccoid form. ► SLL-2 binds to a glycolipid Forssman antigen. ► SLL-2 most likely binds to glycolipids on the algal cell surface. ► Forssman antigen-binding proteins trigger coccoid transformation of Symbiodinium.

Estimation of sperm storage duration in captive loggerhead turtles (Caretta caretta) Ken Sakaoka, Fusae Sakai, Makoto Yoshii, Hitoshi Okamoto, Kazuya Nagasawa Show preview | PDF (630 K) | Supplementary content | Related articles | Related reference work articles Highlights ► We estimated sperm storage duration in captive loggerhead turtles. ► Paternity was consistent if a sire from the previous season re-mated. ► Paternity entirely differed if a different male from the previous season mated. ► A female with fertile eggs did not mate in the next year and laid no fertile eggs. ► Sperm storage across breeding seasons did not occur in the present study.

Habitat preferences of macroinvertebrate fauna among seagrasses with varying structural forms A. Gartner, F. Tuya, P.S. Lavery, K. McMahon Show preview | PDF (636 K) | Related articles | Related reference work articles Highlights

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► Structure in seagrass meadows is equally important to food for macroinvertebrates. ► Small scale, complex structure may be more important than large scale variation. ► The role of structure may be moderated by seagrass surface area.

Horseshoe crab eggs: A rare resource for predators in Long Island Sound Mark A. Beekey, Jennifer H. Mattei, Barbara J. Pierce Show preview | PDF (622 K) | Related articles | Related reference work articles Highlights ► Availability of horseshoe crab eggs to predators was assessed in Long Island Sound. ► Our results indicate that egg predation is limited and opportunistic at best. ► Egg availability depends on spawning density and nest disturbance by conspecifics. ► Limited egg predation in LIS is the result of extremely low spawning densities. ► Management changes are warranted to increase spawning density and egg availability.

Effects of CO2 and iron availability on phytoplankton and eubacterial community compositions in the northwest subarctic Pacific H. Endo, T. Yoshimura, T. Kataoka, K. Suzuki Show preview | PDF (1700 K) | Related articles | Related reference work articles Highlights ► We examined the effects of Fe and CO2 availability on phytoplankton and eubacteria. ► Fe infusion induced diatom blooms. ► Haptophytes were suppressed in response to higher CO2 levels. ► Differences in Fv/Fm values among different CO2 levels were not significant. ► Methylobacterium clade was solely detected in lower CO2 treatments.

Serum triglycerides and ß-hydroxybutyrate predict feeding status in green turtles (Chelonia mydas): Evaluating a single blood sample method for assessing feeding/fasting in reptiles Edwin R. Price, T. Todd Jones, Bryan P. Wallace, Christopher G. Guglielmo Show preview | PDF (362 K) | Related articles | Related reference work articles Highlights ► We sampled plasma from fed and fasted green turtles. ► Plasma triglyceride and glycerol concentrations were lower during fasting. ► Plasma ß-hydroxybutyrate concentration was higher during fasting. ► These metabolites can be used to determine recent feeding history in turtles.

A comparison of the stock structures of two exploited demersal teleosts, employing complementary methods of otolith element analysis D.V. Fairclough, J.S. Edmonds, G. Jackson, R.C.J. Lenanton, J. Kemp, B.W. Molony, I.S. Keay, B.M. Crisafulli, C.B. Wakefield Show preview | PDF (870 K) | Supplementary content | Related articles | Related reference work articles Highlights ► Complementary otolith chemistry techniques employed in stock structure analyses. ► Adult Glaucosoma hebraicum and Pagrus auratus remain within management areas. ► Adult G. hebraicum recruit from nurseries within the same management area. ► Adult P. auratus in each area recruit from nurseries in different management areas. ► The relative importance of sources of recruits needs consideration by management.

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VOLUME 440, FEBRUARY 2013 Website

Research articles

This issue is In Progress but contains articles that are final and fully citable. Aquaculture Journals Page: 122 of 167

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Effects of intracoelomic tagging procedure on white seabream (Diplodus sargus) behavior and survival Barbara Koeck, Anaïs Gudefin, Pascal Romans, Julien Loubet, Philippe Lenfant Show preview | PDF (365 K) | Related articles | Related reference work articles Highlights ► Behavioral comparison of tagged and control fish using instantaneous scan sampling ► No significant differences in activity budgets of tagged and untagged control fish ► No fish mortality, regardless of fish group ► After 48 days, total wound healing and no visceral damages due to tag presence

Latitudinal differences in thermoregulatory color change in Uca pugilator Pablo Munguia, Jeffrey S. Levinton, Nyssa J. Silbiger Show preview | PDF (421 K) | Supplementary content | Related articles | Related reference work articles Highlights ► We examine changes in color in intertidal fiddler crabs. ► Fiddler crabs show latitudinal difference in color change ability. ► Male and female crabs differ in their response to temperature.

Solitary entoprocts living on bryozoans - Commensals, mutualists or parasites? Yuta Tamberg, Natalia Shunatova, Eugeniy Yakovis Show preview | PDF (775 K) | Related articles | Related reference work articles Graphical abstract

Highlights ► Suspension-feeding solitary entoprocts inhabit the surface of bryozoan colonies. ► Spatial distribution of epibionts matched that of feeding polypides. ► Diets of Loxosomella nordgaardi and Tegella armifera partly overlapped. ► Presence of epibionts had no effect on size spectrum and amount of host's food. ► L. nordgaardi appeared to be commensal of T. armifera

Elevated habitat quality reduces variance in fish community composition David Cote, Robert S. Gregory, Corey J. Morris, Brianna H. Newton, David C. Schneider Show preview | PDF (571 K) | Related articles | Related reference work articles Highlights ► Expectations of density dependence were evaluated with a nearshore fish community. ► Eelgrass (good) and unvegetated (poor) habitats were analyzed (1996–2009). ► In line with theory, variability in community composition was less in good habitat. ► Communities in poor habitat had more pronounced directional change across years. ► Community composition in suboptimal or degraded habitats is less predictable.

Sea-surface temperature affects breeding density of an avian rocky intertidal predator, the black oystercatcher Haematopus bachmani J. Mark Hipfner, Robert W. Elner Aquaculture Journals Page: 123 of 167

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Show preview | PDF (542 K) | Related articles | Related reference work articles Highlights ► Fewer black oystercatchers bred on Triangle Island when the ocean was warm. ► Females had lower breeding propensity in warm-water years. ► Temperature affects the physiology and behaviour of the oystercatcher’s prey.

Effect of a physical disturbance event on deep-sea nematode community structure and ecosystem function Daniel Leduc, Conrad A. Pilditch Show preview | PDF (387 K) | Supplementary content | Related articles | Related reference work articles Highlights ► Disturbance in laboratory has no impact on sediment parameters or O2 consumption. ► Limited impact of disturbance on nematode diversity and community structure ► Nematode community appears resilient, although some species negatively affected. ► Sediment depth has most pronounced influence on nematode community attributes.

Predicting climate-induced changes in population dynamics of invasive species in a marine epibenthic community Marcy L. Cockrell, Cascade J.B. Sorte Show preview | PDF (414 K) | Supplementary content | Related articles | Related reference work articles Highlights ► Population demographic modeling can be used to predict responses to climate change. ► We predicted impacts of ocean warming on three invasive marine species. ► Models were parameterized using lab and field experiments and observations. ► Warming is predicted to increase population growth rate for one invasive species. ► Increased population growth was driven by changes in fecundity and growth rates.

Experimental test of two marking methods on survival, growth, mark retention and readability on young-of-year pinfish (Lagodon rhomboides) Christopher V. Matechik, Alejandra Mickle, Christopher D. Stallings Show preview | PDF (661 K) | Related articles | Related reference work articles Highlights ► A tank experiment crossed a marking treatment with a feeding treatment. ► Neither elastomer nor brands affected survival or growth of pinfish. ► Brands had higher retention rates but elastomer tags were easier to read. ► Both marks can be used in population studies but the choice should be contextual.

Bacterial enhancement of bleaching and physiological impacts on the coral Montipora digitata Tomihiko Higuchi, Sylvain Agostini, Beatriz Estela Casareto, Koichi Yoshinaga, Toshiyuki Suzuki, Yoshikatsu Nakano, Hiroyuki Fujimura, Yoshimi Suzuki Show preview | PDF (382 K) | Related articles | Related reference work articles Highlights ► We studied the multiple effects of high temperature and bacteria on coral Montipora. ► Under normal temperatures, bacteria did not affect coral bleaching and metabolisms. ► Under high temperature, bacteria caused severe bleaching and decreased metabolisms. ► Bacteria Sulfitobacter sp., greatly enhanced and accelerated the bleaching process.

Carry-over effects of delayed larval metamorphosis on early juvenile performance in the mangrove crab Ucides cordatus (Ucididae) Darlan de Jesus de Brito Simith, Karen Diele, Fernando Araújo Abrunhosa Show preview | PDF (641 K) | Related articles | Related reference work articles Highlights Aquaculture Journals Page: 124 of 167

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► Effects of delayed larval metamorphosis on early juvenile performance were examined. ► Delayed metamorphosis affected juvenile survival, development time, size and growth. ► Carry-over effects of prolonged larval life persisted through five juvenile stages. ► Detrimental effects varied among offspring produced by different mothers. ► Variability in phenotypic effects may relate to maternal and/or genetic factors.

The effect of light intensity and tidal cycle on the hatching and larval behaviour of the muricid gastropod Chorus giganteus José A. Gallardo, Antonio Brante, Juan Miguel Cancino Show preview | PDF (384 K) | Related articles | Related reference work articles Highlights ► We experimentally evaluated the hatching and larval release of Chorus giganteus. ► We tested the effect of different levels of light and artificial tidal. ► A circadian pattern of larval release but not circatidal was found. ► The swimming activity of the larvae decreased significantly with light intensity.

Analyzing changes in sediment meiofauna communities using the image analysis software ZooImage J. Fredrik Lindgren, Ida-Maja Hassellöv, Ingela Dahllöf Show preview | PDF (582 K) | Related articles | Related reference work articles Highlights ► A novel method of automatic classification of meiofauna communities is proposed. ► The image analysis software ZooImage was used to classify higher taxa. ► Accuracy of classification using an internal method was determined to ~ 82%. ► Automatically classified samples were compared to manual classification of the same. ► Significant differences in communities between sampled depths could be detected.

Portuguese native Artemia parthenogenetica and Artemia franciscana survival under different abiotic conditions Pedro M. Pinto, Ana Bio, Francisco Hontoria, Vitor Almeida, Natividade Vieira Show preview | PDF (1264 K) | Related articles | Related reference work articles Highlights ► Study aims to assess the survival of native A. parthenogenetica and A. franciscana. ► Effects of water temperature, salinity, photoperiod and food supply were studied. ► Native Artemia populations showed great variability in physiological response. ► There is an apparent adaptation of native Artemia to local conditions. ► Chemical barrier, fitness and location suggested as blocking exotic invasion.

Sequence diversity and expression levels of Synechococcus phosphate transporter gene in the East China Sea Shr-Hau Hung, Chih-Ching Chung, Chia-Wen Liao, Gwo-Ching Gong, Jeng Chang Show preview | PDF (680 K) | Related articles | Related reference work articles Highlights ► We investigated Synechococcus pstS gene diversity in the East China Sea. ► We designed primers to quantify pstS expressions in cultures and field samples. ► Inverse proportional relationships were observed between pstS and phosphate. ► Atmospheric deposition may release P stress in Synechococcus.

Using a no-take zone to assess the impacts of fishing: Sessile epifauna appear insensitive to environmental disturbances from commercial potting R.A. Coleman, M.G. Hoskin, E. von Carlshausen, C.M. Davis Show preview | PDF (535 K) | Related articles | Related reference work articles Highlights ► Assessment of fishing impacts requires rigorous experimental data ► The Lundy no-take zone was treated as an experiment to quantify the impacts of lobster potting ► There were Aquaculture Journals Page: 125 of 167

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no changes in benthic assemblages associated with potting (trapping) for lobsters and crabs ► It is likely that potting (trapping) for crustacea is likely to have a minimal impact on benthic systems

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JJJooouuurrrnnnaaalll ooofff FFFiiissshhh BBBiiiooolllooogggyyy

VOLUME 81, PART 7, DECEMBER 2012 Website

Research articles

The physiology of fish behaviour: a selective review of developments over the past 40 years (pages 2103–2126) F. A. Huntingford Abstract Full Article (HTML) PDF(902K) References

Social plasticity in fish: integrating mechanisms and function (pages 2127–2150) R. F. Oliveira Abstract Full Article (HTML) PDF(772K) References

Environmental effects on fish neural plasticity and cognition (pages 2151–2174) L. O. E. Ebbesson and V. A. Braithwaite Abstract Full Article (HTML) PDF(1140K) References

Using physiology and behaviour to understand the responses of fish early life stages to toxicants (pages 2175–2198) K. A. Sloman and P. L. McNeil Abstract Full Article (HTML) PDF(565K) References

Triploidy alters brain morphology in pre-smolt Atlantic salmon Salmo salar: possible implications for behaviour (pages 2199–2212) T. W. K. Fraser, P. G. Fjelldal, J. E. Skjæraasen, T. Hansen and I. Mayer Article first published online: 16 NOV 2012 | DOI: 10.1111/j.1095-8649.2012.03479.x Abstract Full Article (HTML) PDF(685K) References

Brain-encysting trematodes and altered monoamine activity in naturally infected killifish Fundulus parvipinnis (pages 2213–2222) J. C. Shaw and Ø. Øverli Abstract Full Article (HTML) PDF(596K) References

Diel dualism in the energy consumption of the European catfish Silurus glanis (pages 2223–2234) O. Slavík and P. Horký Abstract Full Article (HTML) PDF(669K) References

Electrocommunication behaviour during social interactions in two species of pulse-type weakly electric fishes (Mormyridae) (pages 2235–2254) K. Gebhardt, M. Böhme and G. von der Emde Abstract Full Article (HTML) PDF(1346K) References

Mind the gap: the minimal detectable separation distance between two objects during active electrolocation (pages 2255–2276) K. Fechler, D. Holtkamp, G. Neusel, J. I. Sanguinetti-Scheck, R. Budelli and G. von der Emde Abstract Full Article (HTML) PDF(1260K) References

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JJJooouuurrrnnnaaalll ooofff FFFiiissshhh DDDiiissseeeaaassseeesss

VOLUME 36, PART 1, JANUARY 2013 Website

Research articles

The parasite–host interface in the zonetail butterfly ray, Gymnura zonura (Bleeker), infected with Hexacanalis folifer (Cestoda: Lecanicephalidea) (pages 1–8) J D Borucinska, J J Cielocha and K Jensen Abstract Full Article (HTML) PDF(805K) References

Development and validation of a novel Taqman-based real-time RT-PCR assay suitable for demonstrating freedom from viral haemorrhagic septicaemia virus (pages 9–23) S P Jonstrup, S Kahns, H F Skall, T S Boutrup and N J Olesen Abstract Full Article (HTML) PDF(543K) References

Modelling salmon lice, Lepeophtheirus salmonis, reproduction on farmed Atlantic salmon, Salmo salar L (pages 25–33) M Stormoen, E Skjerve and A Aunsmo Abstract Full Article (HTML) PDF(307K) References

Enhanced detection of infectious salmon anaemia virus using a low-speed centrifugation technique in three fish cell lines (pages 35–44) S D Molloy, E Thomas, K Hoyt and D A Bouchard Abstract Full Article (HTML) PDF(265K) References

Antimicrobial susceptibility pattern of Flavobacterium columnare isolates collected worldwide from 17 fish species (pages 45–55) A M Declercq, F Boyen, W Van den Broeck, P Bossier, A Karsi, F Haesebrouck and A Decostere Abstract Full Article (HTML) PDF(179K) References

Ultraviolet irradiation is an effective alternative to ozonation as a sea water treatment to prevent Kudoa neurophila (Myxozoa: Myxosporea) infection of striped trumpeter, Latris lineata (Forster) (pages 57–65) J M Cobcroft and S C Battaglene Abstract Full Article (HTML) PDF(279K) References

Osmoregulatory disturbances in Atlantic salmon, Salmo salar L., caused by the monogenean Gyrodactylus salaris (pages 67–70) R A Pettersen, S Hytterød, L A Vøllestad and T A Mo Abstract Full Article (HTML) PDF(145K) References

The first detections of subtype 2–related salmonid alphavirus (SAV2) in Atlantic salmon, Salmo salar L., in Norway (pages 71–74) M J Hjortaas, H R Skjelstad, T Taksdal, A B Olsen, R Johansen, B Bang-Jensen, I Ørpetveit and H Sindre Abstract Full Article (HTML) PDF(299K) References

Sensitivity of common carp, Cyprinus carpio L., strains and crossbreeds reared in the Czech Republic to infection by cyprinid herpesvirus 3 (CyHV-3; KHV) (pages 75–80)

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V Piačková, M Flajšhans, D Pokorová, S Reschová, D Gela, A Čížek and T Veselý Abstract Full Article (HTML) PDF(307K) References

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VOLUME 36, PART 2, FEBRUARY 2013 Website

Research articles

Establishment of medium for laboratory cultivation and maintenance of Fredericella sultana for in vivo experiments with Tetracapsuloides bryosalmonae (Myxozoa) (pages 81–88) G Kumar, A Abd-Elfattah, H Soliman and M El-Matbouli Abstract Full Article (HTML) PDF(269K) References

Study of virulence in field isolates of infectious pancreatic necrosis virus obtained from the northern part of Norway (pages 89–102) K Julin, S Mennen and A-I Sommer Abstract Full Article (HTML) PDF(298K) References

Trade practices are main factors involved in the transmission of viral haemorrhagic septicaemia (pages 103–114) M Reichert, M Matras, H F Skall, N J Olesen and S Kahns Abstract Full Article (HTML) PDF(712K) References

Body site matters: an evaluation and application of a novel histological methodology on the quantification of mucous cells in the skin of Atlantic salmon, Salmo salar L. (pages 115–127) K Pittman, A Pittman, S Karlson, T Cieplinska, P Sourd, K Redmond, B Ravnøy and E Sweetman Abstract Full Article (HTML) PDF(632K) References

Genetic variation in Norwegian piscine myocarditis virus in Atlantic salmon, Salmo salar L. (pages 129–139) J Wiik-Nielsen, M Alarcón, B Fineid, M Rode and Ø Haugland Abstract Full Article (HTML) PDF(442K) References

Systemic nocardiosis in a Mediterranean population of cultured meagre, Argyrosomus regius Asso (Perciformes: Sciaenidae) (pages 141–149) A Elkesh, K P L Kantham, A P Shinn, M Crumlish and R H Richards Abstract Full Article (HTML) PDF(643K) References

Development of a multiplex PCR for the identification of pathogenic Edwardsiella tarda and application to edwardsiellosis diagnostics (pages 151–157) G Y Li, Z L Mo, J Li, P Xiao, B Hao and Y H Guo Abstract Full Article (HTML) PDF(192K) References

Change in infectivity titre of nervous necrosis virus (NNV) in brain tissue of sevenband grouper, Epinephalus fasciatus Thunberg, with Poly(I:C) administration (pages 159–162) M-J Oh, W-S Kim, H G Seo, H J Gye and T Nishizawa Abstract Full Article (HTML) PDF(227K) References

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Occurrence of nephrolithiasis in a population of longsnout seahorse, Hippocampus reidi Ginsburg, and analysis of a nephrolith (pages 163–167) E Lewisch, M Kucera, R Tappert, R Tessadri, M Tappert and F Kanz Abstract Full Article (HTML) PDF(441K) References

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VOLUME 112, ISSUE 1, JANUARY 2013 Website

Research articles

Regular Articles

Bacillus thuringiensis Cry1A toxin-binding glycoconjugates present on the brush border membrane and in the peritrophic membrane of the Douglas-fir tussock moth are peritrophins Algimantas P. Valaitis, John D. Podgwaite Show preview | PDF (852 K) | Related articles | Related reference work articles Graphical abstract

Highlights ► Cry1A toxin-binding molecules are abundant on the peritrophic membrane (PM). ► Douglas-fir tussock moth PM and BBMV share similar toxin-binding glycoconjugates. ► The toxin-binding glycoconjugates are peritrophins with O-glycan structures. ► The glycans are necessary for their interaction with the Cry1A class of toxins.

Evaluation of a commercial Bacillus thuringiensis var. israelensis formulation for the control of chironomid midge larvae (Diptera: Chironomidae) in establishing rice crops in south-eastern Australia Mark M. Stevens, Peter A. Hughes, Jianhua Mo Show preview | PDF (256 K) | Related articles | Related reference work articles Graphical abstract

Highlights ► Vectobac® WDG is effective for controlling chironomine larvae in young rice crops. ► Optimal application rate under our trial conditions was between 1.25 and 2 kg/ha. ► Non- Aquaculture Journals Page: 131 of 167

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target tanypodine midge larvae were not adversely affected. ► Effective larval control improved crop establishment.

Parasitological survey of mangrove oyster, Crassostrea rhizophorae, in the Pacoti River Estuary, Ceará State, Brazil Rachel Costa Sabry, Tereza Cristina Vasconcelos Gesteira, Aimê Rachel Magenta Magalhães, Margherita Anna Barracco, Cristhiane Guertler, Liana Pinho Ferreira, Rogério Tubino Vianna, Patrícia Mirella da Silva Show preview | PDF (1316 K) | Related articles | Related reference work articles Graphical abstract

Highlights ► It was carried out a pathological study of the mangrove oyster Crassostrea rhizophorae in Pacoti River Estuary, Ceará, Brazil. ► The oysters Crassostrea rhizophorae from the Pacoti River Estuary, Ceará, are infected by a protozoan of genus Perkinsus. ► Nematopsis was the protozoan found in the highest prevalence. ► The analyzed oysters presented high prevalences of Polydora sp.

Orthosomella lipae sp. n. (Microsporidia) a parasite of the weevil, Liophloeus lentus Germar, 1824 (Coleoptera: Curculionidae) Mykola Ovcharenko, Piotr Świątek, Joseph Ironside, Tomasz Skalski Show preview | PDF (1760 K) | Related articles | Related reference work articles Graphical abstract

Highlights ► We describe a new microsporidian parasite, isolated from the weevil. ► It is associated with the genus Orthosomella. ► Development either with or without a parasitophorous vacuole, within the same host.

A multi-gene phylogeny provides additional insight into the relationships between several Ascosphaera species

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E.G. Klinger, R.R. James, N.N. Youssef, D.L. Welker Show preview | PDF (323 K) | Related articles | Related reference work articles Graphical abstract

Highlights ► Ascosphaera fungi cause chalkbrood disease in several bee species. ► We use up to six loci to generate phylogenies for Ascosphaera species. ► Using all six loci results in the best supported phylogeny. ► Pathogenic and apathogenic Ascosphaera cluster together in our phylogenies. ► With further study, Ascosphaera may be paraphylectic.

Pathological and physiological effects of nicking on brown crab (Cancer pagurus) in the Irish crustacean fishery Jennifer E. Welsh, Pauline A. King, Eugene MacCarthy Show preview | PDF (1008 K) | Related articles | Related reference work articles Graphical abstract

Highlights ► We assessed the pathological status of nicked crab compared to non-nicked crab. ► We examined temporal changes in haemolymph chemistry and tissue pathology. ► We predicted that nicking would reduce the quality of meat and compromise survivability. ► Nicking had a negative impact on the haemolymph chemistry and pathology of crabs.

Thermal preferences of wintering snails Planorbarius corneus (L.) exposed to lipopolysaccharide and zymosan E. Żbikowska, S. Wrotek, A. Cichy, W. Kozak Show preview | PDF (265 K) | Related articles | Related reference work articles Graphical abstract

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Highlights ► We studied thermal behavior of wintering Planorbarius corneus specimens. ► LPS and zymosan changed thermal preferences of snails. ► We observed symptoms of behavioral fever in wintering Planorbarius corneus. ► We suspect hemoglobin-depended mechanism of reaction.

Inhibition of Paenibacillus larvae by lactic acid bacteria isolated from fermented materials Mikio Yoshiyama, Meihua Wu, Yuya Sugimura, Noriko Takaya, Hiromi Kimoto-Nira, Chise Suzuki Show preview | PDF (336 K) | Supplementary content | Related articles | Related reference work articles Graphical abstract

Highlights ► Lactic acid bacteria (LAB) isolated from fermented materials were characterized for use as probiotics in honeybees. ► These LAB inhibited the in vitro growth of Paenibacillus larvae, the causal agent of American foulbrood. ► Selected LAB induced the expression of antimicrobial peptide genes in honeybees. ► These LAB could be used for the control of bacterial pathogens in apiculture.

Characterization of a new strain of Taura syndrome virus (TSV) from Colombian shrimp farms and the implication in the selection of TSV resistant lines Luis Fernando Aranguren, Marcela Salazar, Kathy Tang, Xenia Caraballo, Donald Lightner Show preview | PDF (448 K) | Related articles | Related reference work articles Graphical abstract

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Highlights ► The recent outbreak of TSV present in Colombia is caused by a new strain of TSV. ► TSV CO 10 is as pathogenic as the TSV BLZ (the most pathogenic TSV strain). ► The pathogenicity of TSV CO 10 is given in part by the higher viral load. ► To develop TSV- resistant lines, shrimp must be challenged with local TSV virus strain.

Histological survey of symbionts and other conditions of pod razor clam Ensis siliqua (Linnaeus, 1758) in Galicia (NW Spain) Original Research Article Pages 74-82 Maite Ruiz, Susana Darriba, Rosana Rodríguez, Carmen López Show preview | PDF (2213 K) | Related articles | Related reference work articles Graphical abstract

Highlights ► Health status of Ensis siliqua from Galicia (NW Spain). ► Viral inclusions, prokaryote, protozoa and metazoan organisms were detected. ► Neoplastic diseases were detected. ► Trematodes, viral inclusions and neoplasms could have a pathogenic potential.

Transfer of a parthenogenesis-inducing Wolbachia endosymbiont derived from Trichogramma dendrolimi into Trichogramma evanescens Masaya Watanabe, Daisuke Kageyama, Kazuki Miura Show preview | PDF (276 K) | Related articles | Related reference work articles Graphical abstract

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Highlights ► Wolbachia derived from Trichogramma dendrolimi was cultivated in an insect cell line. ► Wolbachia-infected cells were microinjected into uninfected Trichogramma evanescens. ► Wolbachia was maintained for more than 10 generations in the recipients. ► Parthenogenetically-reproducing individuals were not found in the recipients. ► Wolbachia in Trichogramma species seem to be highly adapted to their hosts.

Characterization of bifidobacteria in the digestive tract of the Japanese honeybee, Apis cerana japonica Meihua Wu, Yuya Sugimura, Noriko Takaya, Daisuke Takamatsu, Masaru Kobayashi, DeMar Taylor, Mikio Yoshiyama Show preview | PDF (902 K) | Supplementary content | Related articles | Related reference work articles Graphical abstract

Highlights ► Bifidobacteria were isolated from the intestinal tract of the Japanese honeybee. ► These bifidobacterial phylotypes were similar to those found in the European honeybee. ► These bifidobacteria exhibited antagonistic effects on M. plutonius growth by in vitro assays. ► These bifidobacteria could potentially be employed as a new biological agent in apiculture.

Selective initiation and transmission of disseminated neoplasia in the soft shell clam Mya arenaria dependent on natural disease prevalence and animal size Norah G. Taraska, S. Anne Böttger Show preview | PDF (812 K) | Related articles | Related reference work articles Graphical abstract

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Highlights ► Initiation of hemic neoplasia in Mya arenaria. ► BrDU displays dose and natural loading dependent initiation of neoplasia. ► Injection of filtered hemolymph initiates neoplasia but in animals of 40–80 mm only. ► Natural susceptibility to hemic neoplasia dependent on natural loading and size.

Rapid Communications

Disseminated neoplasia in clams Venerupis aurea from Galicia (NW Spain): Histopathology, ultrastructure and ploidy of the neoplastic cells, and comparison of diagnostic procedures María J. Carballal, David Iglesias, Seila Díaz, Antonio Villalba Show preview | PDF (564 K) | Related articles | Related reference work articles Graphical abstract

Highlights ► The study describes a neoplastic disorder in clams Venerupis aurea. ► The neoplastic cells had an aneuploid DNA content which varied between 1.6 n and 7.8 n. ► The ploidy level increased with the severity of the disseminated neoplasia. ► Histology was a more sensitive diagnostic test than haemocytological tests. ► Specificity was high for the histology and the two haemocytological techniques.

Cardinium endosymbionts are widespread in synanthropic mite species (Acari: Astigmata) Jan Kopecky, M. Alejandra Perotti, Marta Nesvorna, Tomas Erban, Jan Hubert Show preview | PDF (341 K) | Supplementary content | Related articles | Related reference work articles Graphical abstract

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Highlights ► The presence of ‘Candidatus Cardinium’ bacteria within Astigmata are reported. ► Closely related Cardinium 16S sequences were found in 13 synanthropic mite species. ► Cardinium were also confirmed in wild populations of synanthropic mites.

Silkworm plasmatocytes are more resistant than other hemocyte morphotypes to Bombyx mori nucleopolyhedrovirus infection Takanori Hori, Takashi Kiuchi, Toru Shimada, Masao Nagata, Susumu Katsuma Show preview | PDF (331 K) | Related articles | Related reference work articles Graphical abstract

Highlights ► We developed a novel reporter BmNPV and examined the NPV tropism in hemocytes. ► Silkworm plasmatocytes are more resistant than other hemocyte morphotypes to BmNPV infection. ► BmNPV infection progressed slowly in silkworm spherulocytes.

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VOLUME 92, PART 1, JANUARY 2013 Website

Research articles

Optimisation of a direct plating method for the detection and enumeration of Alicyclobacillus acidoterrestris spores Marek Henczka, Małgorzata Djas, Katarzyna Filipek Show preview | PDF (880 K) | Related articles | Related reference work articles Highlights ► Optimisation of a method for the detection and enumeration of A. acidoterrestris spores ► Evaluation of four isolation media for A. acidoterrestris spores ► YSG agar is the recommended medium for the enumeration of A. acidoterrestris spores. ► Membrane filtration supports the recovery of A. acidoterrestris spores.

Estimated copy number of Bacillus anthracis plasmids pXO1 and pXO2 using digital PCR Timothy Straub, Cheryl Baird, Rachel A. Bartholomew, Heather Colburn, Derrick Seiner, Kristin Victry, Li Zhang, Cynthia J. Bruckner-Lea Show preview | PDF (157 K) | Related articles | Related reference work articles

A method for assessing the disinfection response of microbial bioaerosols retained in antimicrobial filter materials and textiles Kevin M. McCabe, Jane Turner, Mark T. Hernandez Show preview | PDF (366 K) | Related articles | Related reference work articles

Use of MALDI-TOF mass spectrometry for identification of bacteria that are difficult to culture Silpak Biswas, Jean-Marc Rolain Show preview | PDF (438 K) | Related articles | Related reference work articles

Development and evaluation of a method for the quantification of airborne Thermoactinomyces vulgaris by real-time PCR Laetitia Betelli, Philippe Duquenne, Frédéric Grenouillet, Xavier Simon, Emeline Scherer, Evelyne Géhin, Alain Hartmann Show preview | PDF (711 K) | Related articles | Related reference work articles Highlights ► Thermoactinomyces vulgaris detection in bioaerosols by real-time PCR ► Occurrence of Thermoactinomyces vulgaris in the atmosphere of composting plants ► Validation of a detection method using experimental bioaerosols ► Comparison between culture-based detection methods and molecular detection methods

Three dimensional quantification of biological samples using micro-computer aided tomography (microCT) Osu Lilje, Erna Lilje, Agostina V. Marano, Frank H. Gleason Show preview | PDF (1386 K) | Supplementary content | Related articles | Related reference work articles Highlights ► OsO4 vapors increased the X-ray attenuation of the soil fungi grown in a polystyrene matrix. ► Soil fungi are able to grow in a polystyrene matrix when sufficient nutrients are available. ► PAS stain enhanced the X-ray attenuation of the extracellular matrix secreted by some fungi. ► The microCT was used to obtain 3-D volume and surface area ratios of soil fungi grown in an artificial matrix.

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A multiplex-PCR assay for identification of the quarantine plant pathogen Xanthomonas axonopodis pv. phaseoli T. Boureau, M. Kerkoud, F. Chhel, G. Hunault, A. Darrasse, C. Brin, K. Durand, A. Hajri, S. Poussier, C. Manceau, F. Lardeux, F. Saubion, M.-A. Jacques Show preview | PDF (582 K) | Supplementary content | Related articles | Related reference work articles Highlights ► An algorithm finds signatures of pathovars from matrices of characters of strains. ► We design a multiplex PCR assay for detection of X. axonopodis pv. phaseoli (Xap). ► For Xap, pathogenicity assays by dipping are more reliable than by wounding.

Assessment of three commercial DNA extraction kits and a laboratory- developed method for detecting Cryptosporidium and Cyclospora in raspberry wash, basil wash and pesto Joan M. Shields, Jane Joo, Richard Kim, Helen R. Murphy Show preview | PDF (330 K) | Related articles | Related reference work articles

CHiC, a new tandem affinity tag for the protein purification toolbox Gro Anita Stamsås, Leiv Sigve Håvarstein, Daniel Straume Show preview | PDF (401 K) | Related articles | Related reference work articles Highlights ► We have developed a new tandem affinity purification tag called CHiC. ► Milligram amounts of CHiC-fused proteins were efficiently purified to > 95% purity. ► The CHiC-tag was efficiently removed from its fusion partner through just one single purification step. ► The tag has the potential to increase the solubility of target proteins.

A rapid flow cytometric method for distinguishing between febrile bacterial and viral infections Jari Nuutila, Päivi Jalava-Karvinen, Ulla Hohenthal, Pirkko Kotilainen, Tarja-Terttu Pelliniemi, Jukka Nikoskelainen, Esa-Matti Lilius Show preview | PDF (1072 K) | Supplementary content | Related articles | Related reference work articles Highlights ► We present here a novel flow cytometric marker of bacterial infection. ► Rapid and reliable differentiation between febrile bacterial and viral infections ► Diagnostic yield of measured individual variables increases upon combination.

An improved quantitative method to assess adhesive properties of Trichomonas vaginalis to host vaginal ectocervical cells using flow cytometry Anna E.S. Brooks, Tina Parsamand, Robin W. Kelly, Augusto Simoes-Barbosa Show preview | PDF (1019 K) | Related articles | Related reference work articles Highlights ► Flow cytometry (FC) was used to discriminate T. vaginalis and host vaginal cells. ► CellTracker CMTMR allowed absolute quantification of adhered parasites via FC. ► The method was validated using parasites that display a variable degree of adhesion. ► This method is reliable and provides a better solution than fluorescent microscopy. ► This method is accurate and robust and many variables can be tested simultaneously.

Development and systematic validation of qPCR assays for rapid and reliable differentiation of Xylella fastidiosa strains causing citrus variegated chlorosis Wenbin Li, Diva C. Teixeira, John S. Hartung, Qi Huang, Yongping Duan, Lijuan Zhou, Jianchi Chen, Hong Lin, Silvio Lopes, A. Juliano Ayres, Laurene Levy Show preview | PDF (442 K) | Related articles | Related reference work articles Highlights Aquaculture Journals Page: 140 of 167

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► Seven qPCR methods published previously or designed in this work were systemically compared for detection of Xylella fastidiosa. ► One 16S rDNA-based qPCR was developed for the identification of X. fastidiosa at the species level. ► Another qPCR was developed for the specific identification of the X. fastidisoa CVC strains. ► Both new assays were multiplexed with a reliable internal control assay targeting host plant DNA. ► The detection limit of both assays was equivalent to 2 to 10 bacterial cells per reaction for field citrus samples.

Two-step labeling of Staphylococcus aureus with Lysostaphin-Azide and DIBO- Alexa using click chemistry Inga Potapova, David Eglin, Matthias W. Laschke, Markus Bischoff, R. Geoff Richards, T. Fintan Moriarty Show preview | PDF (1758 K) | Related articles | Related reference work articles Graphical abstract

Highlights ► We describe the new two-step labeling protocol using Lysostaphin and click chemistry. ► The protocol is selective in staphylococci labeling in vitro and non-toxic. ► The click labeling enables imaging of bacteria in vivo.

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VOLUME 31, PART 4, DECEMBER 2012 Website

Research articles

Sexual Dimorphism, Allometry, and Size at First Maturity of the Caribbean King Crab, Mithrax spinosissimus, in the Florida Keys J. Antonio Baeza, Joshua R. Anderson, Angelo J. Spadaro and Donald C. Behringer Abstract & References : Full Text : PDF (403 KB) : Rights & Permissions

Development of a Real-Time Pcr Assay for Detection of Planktonic Red King Crab (Paralithodes camtschaticus ()) Larvae Pamela C. Jensen, Maureen K. Purcell, J. Frank Morado and Ginny L. Eckert Abstract & References : Full Text : PDF (211 KB) : Rights & Permissions

Red King Crab, Paralithodes camtschaticus, Size-Fecundity Relationship, and Interannual and Seasonal Variability in Fecundity Katherine M. Swiney, W. Christopher Long, Ginny L. Eckert and Gordon H. Kruse Abstract & References : Full Text : PDF (266 KB) : Rights & Permissions

Seasonal Variation in Brood Size of the Spiny Lobster Panulirus gracilis (Decapoda: Palinuridae) in Mexican Waters of the Gulf of California Raúl Pérez-González, Luis M. Valadez, Guillermo Rodríguez-Domínguez and E. Alberto Aragón-Noriega Abstract & References : Full Text : PDF (289 KB) : Rights & Permissions

Changes in Biochemical Composition of Newly Spawned Eggs, Prehatching Embryos and Newly Hatched Larvae of the Blue Crab Callinectes sapidus Shuguo Li, Yongxu Cheng, Bo Zhou and Anson H. Hines Abstract & References : Full Text : PDF (161 KB) : Rights & Permissions

Growth And Longevity of Glycymeris nummaria (Linnaeus, 1758) from the Eastern Adriatic, Croatia Melita Peharda, Marija Crnčević, Ivana Bušelić, Chris A. Richardson and Daria Ezgeta-Balić Abstract & References : Full Text : PDF (509 KB) : Rights & Permissions

Storm-Induced Anastrophic Burial of the Pacific Geoduck (Panopea generosa) on the West Coast of Vancouver Island Janet Lochead, Darlene Gillespie and Claudia Hand Abstract & References : Full Text : PDF (644 KB) : Rights & Permissions

The Impact of Increased Accuracy in Geoduck (Panopea generosa) Age Determination on Recommended Exploitation Rates Janet Lochead, Zane Zhang and Claudia Hand Abstract & References : Full Text : PDF (764 KB) : Rights & Permissions

Probability of Symbiosis Establishment by Giant Clams with Fresh and Cultured Symbiodinium Isolated from Various Host Animals Takeo Kurihara, Hiroshi Yamashita, Hideaki Yamada, Ken Inoue, Kenji Iwai and Kazuhiko Koike Abstract & References : Full Text : PDF (260 KB) : Rights & Permissions

Growth of Bivalve Atrina vexillum in the Gulf of Thailand

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Alla V. Silina Abstract & References : Full Text : PDF (534 KB) : Rights & Permissions

Enhanced Growth Rates and Condition Index of Blue Mussels (Mytilus edulis) Held at Integrated Multitrophic Aquaculture Sites in the Bay of Fundy Terralynn R. Lander, Shawn M. C. Robinson, Bruce A. MacDonald and James D. Martin Abstract & References : Full Text : PDF (291 KB) : Rights & Permissions

Habitat use of Intertidal Eastern Oyster (Crassostrea virginica) Reefs by Nekton in South Carolina Estuaries Peter R. Kingsley-Smith, Ryan E. Joyce, Stephen A. Arnott, William A. Roumillat, Christopher J. McDonough and Marcel J. M. Reichert Abstract & References : Full Text : PDF (726 KB) : Rights & Permissions

Long-Term (1939 to 2008) Spatial Patterns in Juvenile Eastern Oyster (Crassostrea virginica, Gmelin 1791) Abundance in the Maryland Portion of Chesapeake Bay David G. Kimmel, Mitchell Tarnowski and Roger I. E. Newell Abstract & References : Full Text : PDF (303 KB) : Rights & Permissions

Development of an Immunological Probe to Quantify Reproductive Effort in the Suminoe Oyster, Crassostrea ariakensis (Gould 1861) Bong-Kyu Kim and Kwang-Sik Choi Abstract & References : Full Text : PDF (503 KB) : Rights & Permissions

Effects of Tidal Elevation and Substrate Type on Settlement and Postsettlement Mortality of the Sydney Rock Oyster, Saccostrea glomerata, in a Mangrove Forest and on a Rocky Shore Ka-Man Lee, Frederick R. Krassoi and Melanie J. Bishop Abstract & References : Full Text : PDF (457 KB) : Rights & Permissions

Application of Near-Infrared Reflectance Spectroscopy for the Rapid Chemical Analysis of Sydney Rock Oyster (Saccostrea Glomerata) and Pacific Oyster (Crassostrea gigas) Malcolm R. Brown, Peter D. Kube, Stephan O'Connor, Matthew Cunningham and Harry King Abstract & References : Full Text : PDF (384 KB) : Rights & Permissions

Growth and Condition of the Pacific Oyster Crassostrea gigas at Three Environmentally Distinct South African Oyster Farms Aldi Pieterse, Grant Pitcher, Pavarni Naidoo and Sue Jackson Abstract & References : Full Text : PDF (267 KB) : Rights & Permissions

Temporal Variability in Phytoplankton Removal by a Commercial, Suspended Eastern Oyster Nursery and Effects on Local Plankton Dynamics Yaqin Li, Shannon L. Meseck, Mark S. Dixon, Karen Rivara and Gary H. Wikfors Abstract & References : Full Text : PDF (742 KB) : Rights & Permissions

Spatiotemporal Variation in Oyster Fecundity and Reproductive Output in a Network of No-Take Reserves Raymond M. Mroch III, David B. Eggleston and Brandon J. Puckett Abstract & References : Full Text : PDF (313 KB) : Rights & Permissions

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A Shell-Neutral Modeling Approach Yields Sustainable Oyster Harvest Estimates: A Retrospective Analysis of the Louisiana State Primary Seed Grounds Thomas M. Soniat, John M. Klinck, Eric N. Powell, Nathan Cooper, Mahdi Abdelguerfi, Eileen E. Hofmann, Janak Dahal, Shengru Tu, John Finigan, Benjamin S. Eberline, Jerome F. La Peyre, Megan K. La Peyre and Fareed Qaddoura Abstract & References : Full Text : PDF (601 KB) : Rights & Permissions

Growth and Reproductive Performance of Triploid Yesso Scallops (Patinopecten yessoensis) Induced by Hypotonic Shock Qinglei Meng, Zhenmin Bao, Zhaoping Wang, Shi Wang, Jingjie Hu, Xiaoli Hu and Xiaoting Huang Abstract & References : Full Text : PDF (605 KB) : Rights & Permissions

Quality of Weathervane Scallops (Patinope ctencaurinus) from Eastern and Western Gulf of Alaska Kathryn Brenner, Alexandra C. M. Oliveira, Gregg Rosenkranz, Ryan Burt, Marsha Spafard, Peter J. Bechtel, Charles A. Crapo and Raymond Ralonde Abstract & References : Full Text : PDF (234 KB) : Rights & Permissions

Shell Height-To-Weight Relationships for Atlantic Sea Scallops (Placopecten magellanicus) in Offshore U.S. Waters Daniel R. Hennen and Deborah R. Hart Abstract & References : Full Text : PDF (617 KB) : Rights & Permissions

Heterosis and Combining Abilities in Growth and Survival in Sea Scallops Along the Atlantic Coast of Canada Chunde Wang and Jean Côté Abstract & References : Full Text : PDF (117 KB) : Rights & Permissions

Physiological Effects and Biotransformation of PSP Toxins in the New Zealand Scallop, Pecten novaezelandiae Andrea M. Contreras, Islay D. Marsden and Murray H. G. Munro Abstract & References : Full Text : PDF (205 KB) : Rights & Permissions

Seasonal, Spatial, and Postharvest Variability in the Survival of Repeatedly Discarded Saucer Scallops in Shark Bay, Western Australia Arani Chandrapavan, Mervi I. Kangas and Errol C. Sporer Abstract & References : Full Text : PDF (888 KB) : Rights & Permissions

Use of Length—Frequency Analysis for Growth Estimation of the California Two-Spotted Octopus Octopus bimaculatus Verril 1883 of the Gulf of California Jorge Alberto López-Rocha, Marcial Arellano—Martínez, Bertha Patricia Ceballos—Vázquez, Iván Velázquez—Abunader, Sheila Castellanos—Martínez and Esteban Torreblanca— Ramírez Abstract & References : Full Text : PDF (358 KB) : Rights & Permissions

Larval Competency of Red Abalone (Haliotis rufescens): A New Timeframe for Larval Distribution. Thomas B. Mccormick, Lorraine M. Buckley, Gabriela Navas, Gloria Barber, Brianne Billups, Vanessa Gill, Brianna Jones, Nicholas Peterson, Brianna Saylor and James Sayre Abstract & References : Full Text : PDF (140 KB) : Rights & Permissions

Larval Settlement, Early Growth and Survival of Haliotis tuberculata coccinea using Several Algal Cues

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Gercende Courtois De Viçose, Maria P. Viera, Silvain Huchette and Marisol S. Izquierdo Abstract & References : Full Text : PDF (221 KB) : Rights & Permissions

First Report of Contamination of the Abalone Haliotis discus hannai by Okadaic Acid and Yessotoxin Ji Hoe Kim, Ka Jeong Lee, Toshiyuki Suzuki, Jong Soo Mok, Keunbawi Park, Ji Yeong Kwon, Kwang Tae Son and Ki Cheol Song Abstract & References : Full Text : PDF (153 KB) : Rights & Permissions

Bibliography of Dreissena polymorpha (Zebra Mussels) and Dreissena rostriformis Bugensis (QUAGGA Mussels): 1989 to 2011 Don W. Schloesser and Christine Schmuckal Abstract & References : Full Text : PDF (564 KB) : Rights & Permissions

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VOLUME 43, PART 6, DECEMBER 2012 Website

Research articles

Nematodes as Live Food in Larviculture – A Review (pages 739–763) Jens Brüggemann Abstract Full Article (HTML) PDF(605K) References

Effect of Macroalgae Protein Levels on Some Reproductive Aspects and Physiological Parameters for the Abalone, Haliotis tuberculata coccinea (Reeve 1846) (pages 764–777) Amaia Bilbao, Iker Uriarte, María del Pino Viera, Beatriz Sosa, Hipólito Fernández-Palacios and Carmen M. Hernández-Cruz Abstract Full Article (HTML) PDF(679K) References

Comparative Analysis of Different Fish Polyculture Systems (pages 778–789) Leonardo J. G. Barcellos, Rosmari M. Quevedo, Luiz Carlos Kreutz, Filipe Ritter, Adalberto Pandolfo, Marcelo Hemkemeier, Luciane Colla, Leonardo B. Silva, Gessi Koakoski and João G. S. da Rosa Abstract Full Article (HTML) PDF(503K) References

Effects of Biofloc Reduction on Microbial Dynamics in Minimal-exchange, Superintensive Shrimp, Litopenaeus vannamei, Culture Systems (pages 790–801) Andrew J. Ray, Gloria Seaborn, Luis Vinatea, Craig L. Browdy and John W. Leffler Abstract Full Article (HTML) PDF(654K) References

Growth, Reproductive Performances, and Brood Quality of Long Snout Seahorse, Hippocampus guttulatus, Fed Enriched Shrimp Diets (pages 802–813) Jorge Palma, José P. Andrade and Dominique P. Bureau Abstract Full Article (HTML) PDF(548K) References

Enhancement Effects of Dietary Wheat Distiller's Dried Grains with Solubles on Growth, Immunity, and Resistance to Edwardsiella ictaluri Challenge of Channel Catfish, Ictalurus punctatus (pages 814–827) Erchao Li, Chhorn Lim, Phillip Klesius and Chunfang Cai Abstract Full Article (HTML) PDF(517K) References

Effects of Arginine-Deficient and Replete Diets on Growth Performance, Digestive Enzyme Activities and Genes Expression of Black Sea Bream, Acanthopagrus schlegelii, Juveniles (pages 828–839) Fan Zhou, Jing Zhou, Qingjun Shao, Yue Wang, Hui Li, Song Gao and Ying Hua Abstract Full Article (HTML) PDF(580K) References

Feed Intake, Feed Efficiency, Growth, Body Composition, and Blood Chemistry in Reciprocal Crosses of Wild and Farmed Olive Flounder, Paralichthys olivaceus (pages 840–847) Jong-Hyun Kim, Hyun C. Kim, Jeong-Ho Lee, Jae K. Noh, Jung-Ha Kang, Kyung-Kil Kim and Sang-Min Lee Abstract Full Article (HTML) PDF(479K) References

Progression of Blind-Side Hypermelanosis after Metamorphosis in Cultured Flounder, Paralichthys olivaceus (pages 848–858)

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Duk-Young Kang and Hyo-Chan Kim Abstract Full Article (HTML) PDF(829K) References

An Anaerobic Slurry Module for Solids Digestion and Denitrification in Recirculating Minimal Discharge Marine Fish Culture Systems (pages 859–868) Amir Neori and Dominick Mendola Abstract Full Article (HTML) PDF(655K) References

Swimming Characteristics and Fertilizing Capacity of Meiogynogenetic Summer Flounder, Paralichthys dentatus, Spermatozoa (pages 869–877) Ryan T. Brown, Heidi R. Colburn, David L. Berlinsky, Alex Ziolkowski and George C. Nardi Abstract Full Article (HTML) PDF(490K) References

Divergent Selection for Shell Length in the Manila Clam, Ruditapes philippinarum (pages 878–884) Liqiang Zhao, Xiwu Yan, Zhongming Huo, Feng Yang and Guofan Zhang Abstract Full Article (HTML) PDF(503K) References

Comparison of Phenate and Salicylate Methods for Determination of Total Ammonia Nitrogen in Freshwater and Saline Water (pages 885–889) Phuong Thuy T. Le and C. E. Boyd Abstract Full Article (HTML) PDF(513K) References

Settlement, Survival, and Post-Larval Growth of Red Abalone, Haliotis rufescens, on Polycarbonate Plates Treated with Germlings of Ulva sp. (pages 890–895) Pamela Muñoz, Rattcliff Ambler and Cristian Bulboa Abstract Full Article (HTML) PDF(505K) References

Anesthesia and Transport of Brazilian Flounder, Paralichthys orbignyanus, with Essential Oils of Aloysia gratissima and Ocimum gratissimum (pages 896–900) Simone Cristina Benovit, Luciane Tourem Gressler, Lenise de Lima Silva, Luciano de Oliveira Garcia, Marcelo Hideo Okamoto, Janaína dos Santos Pedron, Luís André Sampaio, Ricardo Vieira Rodrigues, Berta Maria Heinzmann and Bernardo Baldisserotto Abstract Full Article (HTML) PDF(592K) References

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VOLUME 56, PART 1, JANUARY 2013 Website

Research articles

Original Articles

Occurrence and distribution of Naegleria species from thermal spring environments in Taiwan (pages 1–7) P.-M. Kao, M.-C. Tung, B.-M. Hsu, C.-J. Hsueh, Y.-C. Chiu, N.-H. Chen, S.-M. Shen and Y.-L. Huang

Significance and Impact of Study: In this study, we examined the presence of living Naegleria spp. in thermal spring waters in south-eastern Taiwan. Naegleria spp. was isolated and culture-confirmed from thermal spring water. Naegleria fowleri was not found in all water samples, and Naegleria australiensis was the most common Naegleria genotype. Abstract Full Article (HTML) PDF(148K) References

A multiplex RT-PCR for rapid and simultaneous detection of viruses and viroids in chrysanthemum (pages 8–13) A. Song, Y. You, F. Chen, P. Li, J. Jiang and S. Chen

Significance and Impact of Study: The multiplex RT-PCR assay described in this study is the first report of simultaneous detection of virus and viroid in chrysanthemum, which provides a fast, convenient, cost-saving way to detect the virus and viroid mixed infections in plants. Abstract Full Article (HTML) PDF(204K) References

Antimicrobial efficacy of 0·05% cetylpyridinium chloride mouthrinses (pages 14– 20) P.K. Sreenivasan, V.I. Haraszthy and J.J. Zambon

Significance and Impact of Study: These in vitro and ex-vivo studies provide a biological rationale for previous clinical studies demonstrating the efficacy of CPC mouthrinses in reducing supragingival plaque and plaque-associated gingivitis. Abstract Full Article (HTML) PDF(301K) References

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Characterization of maltotriose transporters from the Saccharomyces eubayanus subgenome of the hybrid Saccharomyces pastorianus lager brewing yeast strain Weihenstephan 34/70 (pages 21–29) F.E.M. Cousseau, S.L. Alves Jr, D. Trichez and B.U. Stambuk

Significance and Impact of the Study:The Saccharomyces pastorianus lager yeast usually ferments maltose and maltotriose efficiently, and transport of these α-glucosides into the brewer's yeast cell is thought to be rate limiting in the fermentation of these sugars from wort. Our results revealed a new maltotriose transporter gene in the Saccharomyces eubayanus subgenome of the industrial lager brewing strain Weihenstephan 34/70 that allows efficient maltotriose fermentation by yeast cells. The characterization of maltotriose transporters from industrial yeasts opens new opportunities to increase yeast fitness for fermentation of brewer's wort, preventing incomplete or sluggish maltotriose fermentations. Abstract Full Article (HTML) PDF(244K) References

Changes in microbial contamination levels and prevalence of foodborne pathogens in alfalfa (Medicago sativa) and rapeseed (Brassica napus) during sprout production in manufacturing plants (pages 30–36) S.A. Kim, O.M. Kim and M.S. Rhee Significance and Impact of Study: The present study investigated the levels of microbial contamination present in alfalfa and rapeseed sprouts by examining the samples taken at different stages of the manufacturing process in three actual plants. The results provide detailed information regarding the levels of seed and sprout contamination during production. The results may be useful to those involved in the sprout industry and/or academic research in terms of developing hygienic control measures, efficient intervention methods and appropriate guidelines. Abstract Full Article (HTML) PDF(115K) References

Use of Moroccan medicinal plant extracts as botanical fungicide against citrus blue mould (pages 37–43) L. Askarne, I. Talibi, H. Boubaker, E.H. Boudyach, F. Msanda, B. Saadi and A. Ait Ben Aoumar

Significance and Impact of the Study: This study demonstrates that plant extracts have a high potential to control blue mould of citrus and will provide a starting point for discovering new compounds with better activity than chemical fungicides currently available. Such natural products therefore represent a sustainable alternative to the use of chemical fungicides. Abstract Full Article (HTML) PDF(258K) References

Postprocessing microflora of commercial attieke (a fermented cassava product) produced in the south of Côte d'Ivoire (pages 44–50) A.K. Kouamé, T.N. Djéni, F.K. N'Guessan and M.K. Dje Significance and Impact of Study: This study demonstrates the great need to carry out microbiological tests frequently on attieke and even more the need to apply correct

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HACCP system during the production. Attieke is especially a well-known product in West Africa; hence, it is extremely important to ensure an adequate microbiological quality to guarantee consumers health. Overall, the study highlighted the need for effective communication on microbiological food risks, proper instruction and supervision in food- handling procedures, greater education on food safety risks. Abstract Full Article (HTML) PDF(121K) References

Evaluation of the host specificity of Bacteroides thetaiotaomicron alpha-1-6, mannanase gene as a sewage marker (pages 51–56) A. Aslan and J.B. Rose Significance and Impact of Study: This is the first study that compares Bacteroides thetaiotaomicron alpha-1-6, mannanase marker with other markers. Our study showed that this marker has strong potential to be used as an indicator for sewage pollution in water. Abstract Full Article (HTML) PDF(112K) References

Sequential interactions of silver–silica nanocomposite (Ag–SiO2NC) with cell wall, metabolism and genetic stability of Pseudomonas aeruginosa, a multiple antibiotic-resistant bacterium (pages 57–62) A. Anas, J. Jiya, M.J. Rameez, P.B. Anand, M.R. Anantharaman and S. Nair

Significance and Impact of Study: Although the synthesis, structural characteristics and biofunction of silver nanoparticles are well understood, their application in antimicrobial therapy is still at its infancy as only a small number of microorganisms are tested to be sensitive to nanoparticles. A thorough knowledge of the mode of interaction of nanoparticles with bacteria at subcellular level is mandatory for any clinical application. The present study deals with the interactions of Ag–SiO2NC with the cell wall integrity, metabolism and genetic stability of Pseudomonas aeruginosa, which would contribute substantially in strengthening the therapeutic applications of silver nanoparticles. Abstract Full Article (HTML) PDF(255K) References Supporting Information

Effect of media composition, including gelling agents, on isolation of previously uncultured rumen bacteria (pages 63–70) T. Nyonyo, T. Shinkai, A. Tajima and M. Mitsumori

Significance and Impact of the Study:The results of this study demonstrated that modification of media composition, including gelling agents and concentrations of phosphate

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and magnesium, affected diversities of isolates, which were previously uncultured but were reported as phylotypes from the rumen. Corrected by: Corrigendum: CORRIGENDUM Article first published online: 8 JAN 2013 Abstract Full Article (HTML) PDF(186K) References

Characteristics of lactic acid bacteria isolates and their inoculating effects on the silage fermentation at high temperature (pages 71–78) M.M. Chen, Q.H. Liu, G.R. Xin and J.G. Zhang

Significance and Impact of the Study: Grasses are often difficult to ensile in the tropics and subtropics because of the high temperatures there. To solve this problem, we screened for thermotolerant lactic acid bacteria and obtained two valuable strains of Lactobacillus rhamnosus, HT1 and HT2, which proved to be beneficial to silage fermentation at high temperatures. Lactobacillus rhamnosus HT1 and HT2 can be used as inoculants for silage making in the tropics and subtropics, and will play an important role in developing silage production in such regions. Abstract Full Article (HTML) PDF(159K) References

An assay to screen bacterial adhesion to mucus biomolecules (pages 79–82) A. Tkachenko, L. Da Silva, J. Hearne, S. Parveen and Y. Waguespack

Significance and Impact of the Study: The assay can be used as an initial approach in a systematic identification of mucus constituent(s) exhibiting the most favourable adhesion properties for bacteria. Abstract Full Article (HTML) PDF(408K) References

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VOLUME 56, PART 2, FEBRUARY 2013 Website

Research articles

Mycobactericidal activity of hydrogen peroxide activated by a novel heterogeneous Fentons-like catalyst system (pages 83–87) S.L. Price, K.D. Huddersman, J. Shen and S.E. Walsh

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Significance and Impact of the Study: This study expands on previous published work by demonstrating the enhanced mycobactericidal activity gained by using the novel heterogeneous polyacrylonitrile catalyst, developed at De Montfort University, to potentiate the activity of hydrogen peroxide as a biocide. The increased activation of hydrogen peroxide by this system enables lower concentrations, and shorter contact times, to be used. This system could be used as an alternative within the healthcare sector, such as endoscope disinfection. Abstract Full Article (HTML) PDF(150K) References

Detection of Salmonella spp. from large volumes of water by modified Moore swabs and tangential flow filtration (pages 88–94) R. McEgan, C.A.P. Rodrigues, A. Sbodio, T.V. Suslow, L.D. Goodridge and M.D. Danyluk Significance and Impact of the Study: Large-volume water samples may be screened for the presence of Salmonella both preseason and preharvest. This will provide better data from which to make risk management decisions to improve fresh produce safety. The time required to complete screening (2 days) will make it more practical to screen surface waters for Salmonella prior to use during produce production, to facilitate source tracking in root- cause determination or to determine risk associated with water nearby produce fields. The method enables the direct screening for pathogens in a timely manner, which avoids the need to rely on indicator or index organisms to evaluate food safety risks. Use of this method has the potential to decrease the risk of in-field fresh produce contamination. Abstract Full Article (HTML) PDF(121K) References

Antimicrobial efficacy of cryotreatment against Enterococcus faecalis in root canals (pages 95–98) N. Mandras, V. Allizond, A. Bianco, G. Banche, J. Roana, L. Piazza, P. Viale and A.M. Cuffini

Significance and Impact of the Study The cryotreatment seems to have a greater effect on the reduction in bacteria compared to a standard NaOCl irrigation. The effect of root canal treatment by the statistically bacterial load reduction on the clinical outcome after cryotreatment remains unknown. The interesting potential of cryotreatment should be further investigated through clinical studies aimed to establish a correct irrigation protocol. Abstract Full Article (HTML) PDF(145K) References

Lead-resistant Providencia alcalifaciens strain 2EA bioprecipitates Pb+2 as lead phosphate (pages 99–104) M.M. Naik, D. Khanolkar and S.K. Dubey

Significance and Impact of the Study: Providencia alcalifaciens strain 2EA resist lead nitrate up to 0·0014 mol l−1 by precipitating soluble lead (Pb+2) as insoluble light brown solid. Scanning electron microscopy coupled with energy-dispersive X-ray spectrometric analysis (SEM-EDX) and X-ray diffraction spectroscopy (XRD) revealed extracellular light brown precipitate as lead orthophosphate mineral, that is, Pb9 (PO4)6 catalysed by phosphatase enzyme. Providencia alcalifaciens strain 2EA could be used for bioremediation of lead-contaminated environmental sites, as it can efficiently precipitate lead as insoluble lead phosphate.

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Abstract Full Article (HTML) PDF(380K) References

A simple method of DNA isolation from jute (Corchorus olitorius) seed suitable for PCR-based detection of the pathogen Macrophomina phaseolina (Tassi) Goid (pages 105–110) C. Biswas, P. Dey, S. Satpathy, S.K. Sarkar, A. Bera and B.S. Mahapatra

Significance and Impact of the Study: Stem rot caused by Macrophomina phaseolina is the most important disease of jute, a bast fibre crop. Seedborne infection of the pathogen is generally detected by conventional methods such as blotter method and agar-plate method followed by microscopy. But, these techniques are time-consuming and not sensitive. In the present investigation, M. phaseolina was detected from jute seeds by PCR, which is a rapid and reliable technique. However, high contents of mucilage and secondary metabolites in jute seed hinder DNA isolation and PCR amplification. To address these problems, we developed a Miniprep which yielded a sufficient amount of good quality DNA as compared to other methods and standardized a PCR protocol, which could amplify the fungal DNA present in seed. It would enable efficient PCR-based detection of M. phaseolina from large number of jute seed lots. Abstract Full Article (HTML) PDF(176K) References

Analysis of microbial diversity on deli slicers using polymerase chain reaction and denaturing gradient gel electrophoresis technologies (pages 111–119) O.K. Koo, A.W. Mertz, E.L. Akins, S.A. Sirsat, J.A. Neal, R. Morawicki, P.G. Crandall and S.C. Ricke

Significance and impact of the Study: This study is the first to demonstrate the application of DGGE methodology to investigate the microbial diversity of food-contact surfaces such as deli slicer. These results can further enhance current understanding of the microbial ecology of food-contact surfaces and aid in developing effective cleaning and sanitization methods. Abstract Full Article (HTML) PDF(410K) References

Shiga toxin–producing Escherichia coli from raw milk cheese in Egypt: prevalence, molecular characterization and survival to stress conditions (pages 120–127) M. Elhadidy and M.A. Mohammed Significance and Impact of the Study: The results obtained from this work highlighted the potential occurrence of STEC in Kareish and Damietta cheese. Kareish and Damietta cheese samples are considered one of the traditional Egyptian dairy products and are made from raw unpasteurized milk, and their manufacture and handling techniques are still rudimentary and unsanitary. Our survival studies highlighted the importance of better understanding of how non-O157:H7 STEC behave under stress conditions for better control of the occurrence, growth or survival of this organism in food. Abstract Full Article (HTML) PDF(115K) References

Identification and typing of Francisella tularensis with a highly automated genotyping assay (pages 128–134) D.D. Duncan, A.J. Vogler, M.J. Wolcott, F. Li, D.S. Sarovich, D.N. Birdsell, L.M. Watson, T.A. Hall, R. Sampath, R. Housley, L.B. Blyn, S.A. Hofstadler, D.J. Ecker, P. Keim, D.M. Wagner and M.W. Eshoo Aquaculture Journals Page: 153 of 167

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Significance and Impact of the Study: Molecular characterization of pathogenic subspecies of Francisella tularensis can be obscured by their near neighbours, which can be prevalent in environmental samples. This study describes a multilocus PCR assay for characterizing key species and subspecies of Francisella at multiple levels of resolution, using stable markers defining phylogenetic groups, together with more variable strain-defining markers. Target loci were selected to form an integrated and semi-redundant panel enabling robust identification of samples, including unique samples showing novel assay signatures. Analyses of environmental isolates and a diverse panel of curated samples exemplified the applications of this approach in surveillance and outbreak studies. Abstract Full Article (HTML) PDF(178K) References Supporting Information

Validation of IRS PCR, a molecular typing method, for the study of the diversity and population dynamics of Legionella in industrial cooling circuits (pages 135– 141) D. Jakubek, M. Le Brun, G. Leblon, M. DuBow and M. Binet

Significance and Impact of the Study: IRS PCR, unlike PFGE and SBT, is a suitable tool for the ecological study of Legionella pneumophila in a large scale. It will be helpful to investigate diversity and dynamics of Leg. populations in water systems where these bacteria are strongly represented, as in cooling circuits. Abstract Full Article (HTML) PDF(281K) References Supporting Information

Multiple-pass high-pressure homogenization of milk for the development of pasteurization-like processing conditions (pages 142–148) H. Ruiz-Espinosa, G.G. Amador-Espejo, M.E. Barcenas-Pozos, J.O. Angulo-Guerrero, H.S. Garcia and J. Welti-Chanes

Significance and Impact of the Study: Milk is usually heat-preserved, but certain thermal-related modifications in nutritional, sensory and functional properties may arise. Consequently, nonthermal technologies such as ultrahigh pressure homogenization (UHPH) are currently explored. As part of the scientific criteria needed to assess UHPH equivalency to thermal pasteurization, microbial reduction of both the most baroresistant pathogen and native milk microflora must be determined and processing conditions could be defined through multiple response optimization. Results from the present study show that optimized multiple-pass UHPH treatments are capable of a 5-D reduction of both spoilage and pathogenic flora in whole milk. Abstract Full Article (HTML) PDF(162K) References

Sub-lethal concentrations of antibiotics increase mutation frequency in the cystic fibrosis pathogen Pseudomonas aeruginosa (pages 149–154) Aquaculture Journals Page: 154 of 167

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C.G. Nair, C. Chao, B. Ryall and H.D. Williams

Significance and Impact of the Study: A wide spectrum of antibiotics is used against infections of the lungs of cystic fibrosis (CF) sufferers, who are subjected to antibiotic therapy at regular intervals throughout their lives. However, high antibiotic concentrations are difficult to achieve in vivo, and bacteria that are repeatedly exposed to sublethal levels develop resistance. We demonstrate that sublethal levels of clinically important bactericidal antibiotics lead to an increase in mutation frequency in the major CF pathogen Pseudomonas aeruginosa. These findings could be clinically significant because sublethal concentrations of antibiotics present during chronic infection may act as mutagens and facilitate adaptation of bacteria to the CF lung. Abstract Full Article (HTML) PDF(179K) References

Combined effect of sodium nitrite with high-pressure treatments on the inactivation of Escherichia coli BW25113 and Listeria monocytogenes NCTC 11994 (pages 155–160) M. De Alba, D. Bravo, M. Medina, S.F. Park and B.M. Mackey

Significance and Impact of the Study: High hydrostatic pressure (HHP) is an effective nonthermal food preservation technology that can be used to increase food safety and shelf life with minimal changes in food quality. Various antimicrobial agents including bacteriocins, lysozyme, chitosan, lactoperoxidase and essential oils have been tested in combination with HHP to enhance the effect of mild-pressure treatments. This is the first report of a synergistic bactericidal effect of high pressure and acidified nitrite. A better understanding of combined preservation processes and synergistic effects will help ensure the safety of processed foods. Abstract Full Article (HTML) PDF(211K) References

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VOLUME 159, PART 12, DECEMBER 2012 Website

Research articles

Original Paper

Interactions among sea otters, sea stars, and suspension-feeding invertebrates in the western Aleutian archipelago Kenneth Vicknair, James A. Estes Pages 2641-2649 Download PDF (369KB) View Article

The effect of incubation temperature on hatchling quality in the olive ridley turtle, Lepidochelys olivacea, from Alas Purwo National Park, East Java, Indonesia: implications for hatchery management R. I. Maulany, D. T. Booth, G. S. Baxter Pages 2651-2661 Download PDF (428KB) View Article

Estimating photophysiological condition of endosymbiont-bearing Baculogypsina sphaerulata based on the holobiont color represented in CIE L*a*b* color space Takashi Hosono, Kazuhiko Fujita, Hajime Kayanne Pages 2663-2673 Download PDF (489KB) View Article

Growth-selective survival of young jack mackerel Trachurus japonicus during transition from pelagic to demersal habitats in the East China Sea Motomitsu Takahashi, Chiyuki Sassa, Youichi Tsukamoto Pages 2675-2685 Download PDF (623KB) View Article

Head start: Australian sea lion pups gain experience of adult foraging grounds before weaning A. D. Lowther, S. D. Goldsworthy Pages 2687-2696 Download PDF (602KB) View Article

Herbivory by the Caribbean king crab on coral patch reefs Mark J. Butler IV, Angela M. Mojica Pages 2697-2706 Download PDF (298KB) View Article

Morphology and development of benthic and pelagic life stages of North Sea jellyfish (Scyphozoa, Cnidaria) with special emphasis on the identification of ephyra stages Sabine Holst Pages 2707-2722 Download PDF (4172KB) View Article

An AFLP-based test of clonality in widespread, putatively asexual populations of Porphyra umbilicalis (Rhodophyta) in the Northwest Atlantic with an in silico analysis for bacterial contamination N. A. Blouin, S. H. Brawley Pages 2723-2729 Download PDF (473KB) View Article

A first quantitative assessment of the ecology of cryptobenthic fishes in the Mediterranean Sea M. Kovačić, R. A. Patzner, U. Schliewen Pages 2731-2742 Download PDF (480KB) View Article

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Multi-scale foraging variability in Northern gannet (Morus bassanus) fuels potential foraging plasticity Emeline Pettex, Svein-Håkon Lorentsen, David Grémillet, Olivier Gimenez… Pages 2743- 2756 Download PDF (843KB) View Article

Contrasting pattern of mitochondrial population diversity between an estuarine bivalve, the Kumamoto oyster Crassostrea sikamea, and the closely related Pacific oyster C. gigas Masashi Sekino, Shin’ichi Sato, Jae-Sang Hong, Qi Li Pages 2757-2776 Download PDF (1834KB) View Article

Intercontinental tests of the effects of habitat patch type on the distribution of chitons within and among patches in intertidal boulder field landscapes Kiran Liversage, Victoria J. Cole, Christopher D. McQuaid… Pages 2777-2786 Download PDF (341KB) View Article

How well do sunken vessels approximate fish assemblages on coral reefs? Conservation implications of vessel-reef deployments A. M. Fowler, D. J. Booth Pages 2787-2796 Download PDF (441KB) View Article

Do artificial structures alter marine invertebrate genetic makeup? Cécile Fauvelot, Federica Costantini, Massimiliano Virgilio… Pages 2797-2807 Download PDF (476KB) View Article

Seasonal rhythm in a Mediterranean coastal fish community as monitored by a cabled observatory Fernando Condal, Jacopo Aguzzi, Francesc Sardà, Marc Nogueras… Pages 2809-2817 Download PDF (607KB) View Article

Ocean acidification reduces biomineralization-related gene expression in the sea urchin, Hemicentrotus pulcherrimus Haruko Kurihara, Yoshiki Takano, Daisuke Kurokawa, Koji Akasaka Pages 2819-2826 Download PDF (346KB) View Article

Antarctic coastal microalgal primary production and photosynthesis Andrew McMinn, Chris Ashworth, Ranjeet Bhagooli, Andrew Martin… Pages 2827-2837 Download PDF (369KB) View Article

Sex and microhabitat influence the uptake and allocation of mycosporine-like amino acids to tissues in the purple sea urchin, Strongylocentrotus purpuratus Sarah A. Gravem, Nikki L. Adams Pages 2839-2852 Download PDF (618KB) View Article

Physiological development of brooded larvae from two pocilloporid corals in Taiwan V. R. Cumbo, T.-Y. Fan, P. J. Edmunds Pages 2853-2866 Download PDF (450KB) View Article

Habitat complexity impacts persistence and species interactions in an intertidal whelk J. Stephen Gosnell, Jamie B. DiPrima, Steven D. Gaines Pages 2867-2874 Download PDF (243KB) View Article

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Material properties of Didemnum vexillum and prediction of tendril fragmentation James F. Reinhardt, Kimberley L. Gallagher, Lauren M. Stefaniak… Pages 2875-2884 Download PDF (462KB) View Article

Short Communication

Integrating field and laboratory evidence for environmental sex determination in the amphipod, Echinogammarus marinus Yasmin Guler, Stephen Short, Peter Kile, Alex T. Ford Pages 2885-2890 Download PDF (295KB) View Article

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VOLUME 160, PART 1, JANUARY 2013 Website

Research articles

Original Paper

Interactive effects of UV radiation and enhanced temperature on photosynthesis, phlorotannin induction and antioxidant activities of two sub- Antarctic brown algae Edgardo Cruces, Pirjo Huovinen, Iván Gómez Pages 1-13 Download PDF (677KB) View Article

Comparison of methods for determining key marine areas from tracking data Claire Tancell, Richard A. Phillips, Jose C. Xavier, Geraint A. Tarling… Pages 15-26 Download PDF (836KB) View Article

Effects of seawater temperature and pH on the boring rates of the sponge Cliona celata in scallop shells Alan R. Duckworth, Bradley J. Peterson Pages 27-35 Download PDF (462KB) View Article

Age and growth rates of Hawaiian hawksbill turtles (Eretmochelys imbricata) using skeletochronology Melissa L. Snover, George H. Balazs, Shawn K. K. Murakawa… Pages 37-46 Download PDF (638KB) View Article

Temporal separation of two fin whale call types across the eastern North Pacific Ana Širović, Lauren N. Williams, Sara M. Kerosky, Sean M. Wiggins… Pages 47-57 Download PDF (498KB) View Article

Changes in size and trends of North American sea duck populations associated with North Pacific oceanic regime shifts Paul L. Flint Pages 59-65 Download PDF (236KB) View Article

Reproduction in the externally brooding sea anemone Epiactis georgiana in the Antarctic Peninsula and the Weddell Sea E. Rodríguez, C. Orejas, P. J. López-González, J. M. Gili Pages 67-80 Download PDF (1170KB) View Article

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Feeding patterns of Lampanyctus pusillus (Pisces: Myctophidae) throughout its ontogenetic development Ainhoa Bernal, M. Pilar Olivar, M. Luz Fernández de Puelles Pages 81-95 Download PDF (835KB) View Article

Temporal and spatial variability in coral recruitment on two Indonesian coral reefs: consistently lower recruitment to a degraded reef P. Salinas-de-León, C. Dryden, D. J. Smith, J. J. Bell Pages 97-105 Download PDF (457KB) View Article

Comparing community structure on shells of the abalone Haliotis midae and adjacent rock: implications for biodiversity Zannè Zeeman, George M. Branch, Daniel Farrell, Gavin W. Maneveldt… Pages 107-117 Download PDF (1193KB) View Article

Reproductive synchrony in a habitat-forming kelp and its relationship with environmental conditions Margaret B. Mohring, Thomas Wernberg, Gary A. Kendrick, Michael J. Rule Pages 119-126 Download PDF (342KB) View Article

Nest and maternal origin can influence morphology and locomotor performance of hatchling green turtles (Chelonia mydas) incubated in field nests David T. Booth, Róisín Feeney, Yui Shibata Pages 127-137 Download PDF (368KB) View Article

Reproductive periodicity of the scleractinian coral Lophelia pertusa from the Trondheim Fjord, Norway Sandra Brooke, Johanna Järnegren Pages 139-153 Download PDF (1336KB) View Article

Morphology, molecular phylogeny and photosynthetic activity of the sacoglossan mollusc, Elysia nigrocapitata, from Korea Tatyana A. Klochkova, Jong Won Han, Kyong-Hwa Chah, Ro Won Kim… Pages 155-168 Download PDF (1455KB) View Article

Stoichiometry, growth, and fecundity responses to nutrient enrichment by invertebrate grazers in sub-tropical turtle grass (Thalassia testudinum) meadows Lesley P. Baggett, Kenneth L. Heck Jr., Thomas A. Frankovich… Pages 169-180 Download PDF (391KB) View Article

Marsh macrophyte responses to inundation anticipate impacts of sea-level rise and indicate ongoing drowning of North Carolina marshes Christine M. Voss, Robert R. Christian, James T. Morris Pages 181-194 Download PDF (779KB) View Article

Population trends of Steller sea lions (Eumetopias jubatus) with respect to remote sensing measures of chlorophyll-a in critical habitat Michelle E. Lander, Lowell W. Fritz, Devin S. Johnson, Miles G. Logsdon Pages 195-209 Download PDF (1212KB) View Article

Sensitivity of gametes, fertilization, and embryo development of the Japanese pearl oyster, Pinctada fucata martensii, to the harmful dinoflagellate, Heterocapsa circularisquama Leila Basti, Kiyohito Nagai, Yuji Tanaka, Susumu Segawa Pages 211-219 Download PDF (602KB) View Article

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Year-round reproduction in a seasonal sea: biological cycle of the introduced ascidian Styela plicata in the Western Mediterranean M. Carmen Pineda, Susanna López-Legentil, Xavier Turon Pages 221-230 Download PDF (829KB) View Article

Maturation differences between sub-stocks of haddock, Melanogrammus aeglefinus Peter J. Wright, Declan Tobin Pages 231-239 Download PDF (332KB) View Article

Short Communication

Feeding in Arctic darkness: mid-winter diet of the pelagic amphipods Themisto abyssorum and T. libellula Angelina Kraft, Jørgen Berge, Øystein Varpe, Stig Falk-Petersen Pages 241-248 Download PDF (397KB) View Article

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VOLUME 15, PART 1, FEBRUARY 2013 Website

Research articles

Original Article

Genetic Positioning of Centromeres through Half-Tetrad Analysis in Gynogenetic Diploid Families of the Zhikong Scallop (Chlamys farreri) Hongtao Nie, Qi Li, Xuelin Zhao, Lingfeng Kong Pages 1-15 Download PDF (307KB) View Article

Three EST-SSR Markers Associated with QTL for the Growth of the Clam Meretrix meretrix Revealed by Selective Genotyping Xia Lu, Hongxia Wang, Baozhong Liu, Jianhai Xiang Pages 16-25 Download PDF (218KB) View Article

Both Decrease in ACL1 Gene Expression and Increase in ICL1 Gene Expression in Marine-Derived Yeast Yarrowia lipolytica Expressing INU1 Gene Enhance Citric Acid Production from Inulin Xiao-Yan Liu, Zhe Chi, Guang-Lei Liu, Catherine Madzak… Pages 26-36 Download PDF (578KB) View Article

Biomass and Lipid Production of Dinoflagellates and Raphidophytes in Indoor and Outdoor Photobioreactors C. Fuentes-Grünewald, E. Garcés, E. Alacid, S. Rossi, J. Camp Pages 37-47 Download PDF (2787KB) View Article

Establishment of a Genetic Transformation System for the Marine Pennate Diatom Fistulifera sp. Strain JPCC DA0580—A High Triglyceride Producer Masaki Muto, Yorikane Fukuda, Michiko Nemoto, Tomoko Yoshino… Pages 48-55 Download PDF (256KB) View Article

Construction of an Artificially Randomized IgNAR Phage Display Library: Screening of Variable Regions that Bind to Hen Egg White Lysozyme Maki Ohtani, Jun-ichi Hikima, Tae Sung Jung, Hidehiro Kondo… Pages 56-62 Download PDF (633KB) View Article

Genomic Mining for Novel FADH2-Dependent Halogenases in Marine Sponge- Associated Microbial Consortia Kristina Bayer, Matthias Scheuermayer, Lars Fieseler, Ute Hentschel Pages 63-72 Download PDF (263KB) View Article

Mannan-Binding Lectin of the Sea Urchin Strongylocentrotus nudus Aleksandr A. Bulgakov, Marina G. Eliseikina, Svetlana N. Kovalchuk… Pages 73-86 Download PDF (661KB) View Article

Cold-Adapted Digestive Aspartic Protease of the Clawed Lobsters Homarus americanus and Homarus gammarus: Biochemical Characterization Liliana Rojo, Fernando García-Carreño… Pages 87-96 Download PDF (373KB) View Article

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Biotransformation of Phenylacetonitrile to 2-Hydroxyphenylacetic Acid by Marine Fungi Julieta Rangel de Oliveira, Carolina Megumi Mizuno… Pages 97-103 Download PDF (397KB) View Article

Effects of Chronic Cortisol Administration on Global Expression of GR and the Liver Transcriptome in Sparus aurata Mariana Teles, Sebastian Boltaña, Felipe Reyes-López… Pages 104-114 Download PDF (323KB) View Article

Identification of Two Penelope-Like Elements with Different Structures and Chromosome Localization in Kuruma Shrimp Genome Takashi Koyama, Hidehiro Kondo, Takashi Aoki, Ikuo Hirono Pages 115-123 Download PDF (1113KB) View Article

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VOLUME 78, PART 6, NOVEMBER 2012 Website

Research articles

Performance evaluation of fishing lamp using oval-shaped blue LEDs for squid jigging fishery in offshore fishing grounds in the Sea of Japan TAKAFUMI SHIKATA, KUNIHARU YAMASHITA, MITSUSHI SHIRATA AND YOUICHI MACHIDA

Catching efficiency of toothed dredges for ark shell Scapharca broughtonii in Sendai Bay, Northeastern Japan TORU TANABE, KAZUHITO WATANABE, NORIAKI SUZUKI AND TOSHINORI ONO

Growth pattern and age composition of roughscale sole Clidoderma asperrimum off the Pacific coast of northern Honshu, Japan RYO INAGAWA, TSUTOMU HATTORI, KAZUHITO WATANABE, YOJI NARIMATSU AND MASAKI ITO

Ruggedness of the seafloor and distribution of demersal fishes in the fishing grounds on the continental slope off the Pacific coast of Hokkaido, Japan TOMONORI HAMATSU

Vertical distribution of Manila clam Ruditapes philippinarum larvae characterized through year-round observations in Tokyo Bay, Japan MITSUHARU TOBA, HIROSHI YAMAKAWA, NORIHIKO SHOJI AND YUTAKA KOBAYASHI

Assessment of the characteristic traits of hatchery-reared ayu as a recreational fishing target: comparison of two breeds subcultured under identical conditions MASAYUKI MIURA, JUN-ICHI TSUBOI, TAKUMI OKAZAKI, HIDEKI OOHAMA AND AKIHIKO ASHIZAWA

Delay of budding and growth inhibition of the reed Phragmites australis caused by reaping of withered stems and submergence of the cut ends THE LATE KOH-ICHI FUJIWARA

Age and growth of barfin flounder Verasper moseri in the eastern coastal waters of Cape Erimo, Hokkaido, Japan YOSHIYA SHIKISHIMA, TETSUYA TAKATSU, TOYOMI TAKAHASHI, MASAMITSU NINOMIYA, SHINJI SAKAI, HIROYUKI ICHINOSE, TAIZO MORIOKA AND MASAYOSHI SASAKI

Nutrient elimination in an artificial dam reservoir, Lake Okutsu SHUZO TAKAGI, MASAYOSHI KONDO, SEIJI TSUCHIE AND TATEKI FUJIWARA

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VOLUME 4, ISSUE 4, DECEMBER 2012 Website

Research articles

Environmental comparison of intensive and integrated agriculture–aquaculture systems for striped catfish production in the Mekong Delta, Vietnam, based on two existing case studies using life cycle assessment (pages 195–208) Ingeborg N. Kluts, José Potting, Roel H. Bosma, Le T. Phong and Henk M. J. Udo Abstract Full Article (HTML) PDF(1067K) References

Open-water integrated multi-trophic aquaculture: environmental biomitigation and economic diversification of fed aquaculture by extractive aquaculture (pages 209–220) Thierry Chopin, John Andrew Cooper, Gregor Reid, Stephen Cross and Christine Moore Abstract Full Article (HTML) PDF(537K) References

Megalocytivirus infection in fish (pages 221–233) Kuttichantran Subramaniam, Mohamed Shariff, Abdul Rahman Omar and Mohd Hair-Bejo Article first published online: 4 DEC 2012 | DOI: 10.1111/j.1753-5131.2012.01075.x Abstract Full Article (HTML) PDF(227K) References

Is lower intensity aquaculture a valuable means of producing food? An evaluation of its effects on near-shore and inland waters (pages 234–245) James S. Diana Abstract Full Article (HTML) PDF(286K) References

Chinese Abstracts (pages 246–249) Abstract Full Article (HTML) PDF(333K)

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VOLUME 30, PART 10, OCTOBER 2012 Website

Research articles

Forum: Science & Society Biotechnology policy series

Biofuels development and the policy regime Jim C. Philp, Ken Guy, Rachael J. Ritchie Show preview | PDF (162 K) | Related articles | Related reference work articles

Translating cell-free fetal DNA technology: structural lessons from non-invasive RhD blood typing Taylor A. Goodspeed, Megan Allyse, Lauren C. Sayres, Mary E. Norton, Mildred K. Cho Show preview | PDF (81 K) | Related articles | Related reference work articles

Reviews

Bioprinting for stem cell research Savas Tasoglu, Utkan Demirci Show preview | PDF (2196 K) | Related articles | Related reference work articles

Anaerobic fermentation of glycerol: a platform for renewable fuels and chemicals James M. Clomburg, Ramon Gonzalez Show preview | PDF (607 K) | Related articles | Related reference work articles Highlights ► Glycerol is an abundant and inexpensive carbon source generated as a by-product of biofuel production. ► High degree of reduction of glycerol enables increased yields of fuels and reduced chemicals. ► Current efforts exploit glycerol for the microbial production of numerous compounds. ► Future research efforts will expand the portfolio of available products.

Network analysis: tackling complex data to study plant metabolism David Toubiana, Alisdair R. Fernie, Zoran Nikoloski, Aaron Fait Show preview | PDF (1190 K) | Related articles | Related reference work articles Highlights ► Network analysis approaches to study cellular functions ► From metabolite profiling to regulatory mechanisms with the aid of networks.

Science-based bioprocess design for filamentous fungi Andreas E. Posch, Christoph Herwig, Oliver Spadiut Show preview | PDF (506 K) | Related articles | Related reference work articles Highlights ► One-stop-encyclopedia for approaches to major obstacles in filamentous bioprocesses ► Review of links between strain, inoculum, morphology, rheology, and performance ► Outline for science-based bioprocess characterization, development, and control ► Systematic bioprocess design methods for optimized industrial biotechnology.

Immunosignaturing: a critical review Kathryn F. Sykes, Joseph B. Legutki, Phillip Stafford Show preview | PDF (1097 K) | Related articles | Related reference work articles

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Coping with complexity in metabolic engineering Joerg Mampel, Joerg Martin Buescher, Guido Meurer, Juergen Eck Show preview | PDF (282 K) | Related articles | Related reference work articles

Erratum

Erratum: Antibacterial properties of nanoparticles: [Trends in Biotechnology 30 (2012), 499–511] Mohammad J. Hajipour, Katharina M. Fromm, Ali Akbar Ashkarran, Dorleta Jimenez de Aberasturi, Idoia Ruiz de Larramendi, Teofilo Rojo, Vahid Serpooshan, Wolfgang J. Parak, Morteza Mahmoudi Show preview | PDF (845 K) | Related articles | Related reference work articles

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VOLUME 21, PART 1, JANUARY 2013 Website

Research articles

Opinion

Fake virus particles generated by fluorescence microscopy Patrick Forterre, Nicolas Soler, Mart Krupovic, Evelyne Marguet, Hans-W. Ackermann Show preview | PDF (576 K) | Related articles | Related reference work articles

Reviews

Microbial translocation, immune activation, and HIV disease Nichole R. Klatt, Nicholas T. Funderburg, Jason M. Brenchley Show preview | PDF (440 K) | Related articles | Related reference work articles

The function and evolution of the Aspergillus genome John G. Gibbons, Antonis Rokas Show preview | PDF (427 K) | Related articles | Related reference work articles

Integrative mobile elements exploiting Xer recombination Bhabatosh Das, Eriel Martínez, Caroline Midonet, François-Xavier Barre Show preview | PDF (884 K) | Related articles | Related reference work articles

Ubiquitin-like proteins and their roles in archaea Julie A. Maupin-Furlow Show preview | PDF (590 K) | Related articles | Related reference work articles

Small RNAs and their role in biofilm formation Jacob R. Chambers, Karin Sauer Show preview | PDF (354 K) | Related articles | Related reference work articles

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