CME 305: Discrete Mathematics and Algorithms Lecture 2
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1 Vertex Connectivity 2 Edge Connectivity 3 Biconnectivity
1 Vertex Connectivity So far we've talked about connectivity for undirected graphs and weak and strong connec- tivity for directed graphs. For undirected graphs, we're going to now somewhat generalize the concept of connectedness in terms of network robustness. Essentially, given a graph, we may want to answer the question of how many vertices or edges must be removed in order to disconnect the graph; i.e., break it up into multiple components. Formally, for a connected graph G, a set of vertices S ⊆ V (G) is a separating set if subgraph G − S has more than one component or is only a single vertex. The set S is also called a vertex separator or a vertex cut. The connectivity of G, κ(G), is the minimum size of any S ⊆ V (G) such that G − S is disconnected or has a single vertex; such an S would be called a minimum separator. We say that G is k-connected if κ(G) ≥ k. 2 Edge Connectivity We have similar concepts for edges. For a connected graph G, a set of edges F ⊆ E(G) is a disconnecting set if G − F has more than one component. If G − F has two components, F is also called an edge cut. The edge-connectivity if G, κ0(G), is the minimum size of any F ⊆ E(G) such that G − F is disconnected; such an F would be called a minimum cut.A bond is a minimal non-empty edge cut; note that a bond is not necessarily a minimum cut. -
CLRS B.4 Graph Theory Definitions Unit 1: DFS Informally, a Graph
CLRS B.4 Graph Theory Definitions Unit 1: DFS informally, a graph consists of “vertices” joined together by “edges,” e.g.,: example graph G0: 1 ···················•······························· ····························· ····························· ························· ···· ···· ························· ························· ···· ···· ························· ························· ···· ···· ························· ························· ···· ···· ························· ············· ···· ···· ·············· 2•···· ···· ···· ··· •· 3 ···· ···· ···· ···· ···· ··· ···· ···· ···· ···· ···· ···· ···· ···· ···· ···· ······· ······· ······· ······· ···· ···· ···· ··· ···· ···· ···· ···· ···· ··· ···· ···· ···· ···· ···· ···· ···· ···· ···· ···· ··············· ···· ···· ··············· 4•························· ···· ···· ························· • 5 ························· ···· ···· ························· ························· ···· ···· ························· ························· ···· ···· ························· ····························· ····························· ···················•································ 6 formally a graph is a pair (V, E) where V is a finite set of elements, called vertices E is a finite set of pairs of vertices, called edges if H is a graph, we can denote its vertex & edge sets as V (H) & E(H) respectively if the pairs of E are unordered, the graph is undirected if the pairs of E are ordered the graph is directed, or a digraph two vertices joined by an edge -
Efficient Multicore Algorithms for Identifying Biconnected Components
International Journal of Networking and Computing { www.ijnc.org ISSN 2185-2839 (print) ISSN 2185-2847 (online) Volume 6, Number 1, pages 87{106, January 2016 Efficient Multicore Algorithms For Identifying Biconnected Components1 Meher Chaitanya [email protected] and Kishore Kothapalli [email protected] International Institute of Information Technology Hyderabad, Gachibowli, India 500 032. Received: July 30, 2015 Revised: October 26, 2015 Accepted: December 1, 2015 Communicated by Akihiro Fujiwara Abstract In this paper we design and implement an algorithm for finding the biconnected components of a given graph. Our algorithm is based on experimental evidence that finding the bridges of a graph is usually easier and faster in the parallel setting. We use this property to first decompose the graph into independent and maximal 2-edge-connected subgraphs. To identify the articulation points in these 2-edge connected subgraphs, we again convert this into a problem of finding the bridges on an auxiliary graph. It is interesting to note that during the conversion process, the size of the graph may increase. However, we show that this small increase in size and the run time is offset by the consideration that finding bridges is easier in a parallel setting. We implement our algorithm on an Intel i7 980X CPU running 12 threads. We show that our algorithm is on average 2.45x faster than the best known current algorithms implemented on the same platform. Finally, we extend our approach to dense graphs by applying the sparsification technique suggested by Cong and Bader in [7]. Keywords: Biconnected components, Least common ancestor, 2-edge connected components, Articulation points 1 Introduction The biconnected components of a given graph are its maximal 2-connected subgraphs. -
Matroid Theory
MATROID THEORY HAYLEY HILLMAN 1 2 HAYLEY HILLMAN Contents 1. Introduction to Matroids 3 1.1. Basic Graph Theory 3 1.2. Basic Linear Algebra 4 2. Bases 5 2.1. An Example in Linear Algebra 6 2.2. An Example in Graph Theory 6 3. Rank Function 8 3.1. The Rank Function in Graph Theory 9 3.2. The Rank Function in Linear Algebra 11 4. Independent Sets 14 4.1. Independent Sets in Graph Theory 14 4.2. Independent Sets in Linear Algebra 17 5. Cycles 21 5.1. Cycles in Graph Theory 22 5.2. Cycles in Linear Algebra 24 6. Vertex-Edge Incidence Matrix 25 References 27 MATROID THEORY 3 1. Introduction to Matroids A matroid is a structure that generalizes the properties of indepen- dence. Relevant applications are found in graph theory and linear algebra. There are several ways to define a matroid, each relate to the concept of independence. This paper will focus on the the definitions of a matroid in terms of bases, the rank function, independent sets and cycles. Throughout this paper, we observe how both graphs and matrices can be viewed as matroids. Then we translate graph theory to linear algebra, and vice versa, using the language of matroids to facilitate our discussion. Many proofs for the properties of each definition of a matroid have been omitted from this paper, but you may find complete proofs in Oxley[2], Whitney[3], and Wilson[4]. The four definitions of a matroid introduced in this paper are equiv- alent to each other. -
Matroids You Have Known
26 MATHEMATICS MAGAZINE Matroids You Have Known DAVID L. NEEL Seattle University Seattle, Washington 98122 [email protected] NANCY ANN NEUDAUER Pacific University Forest Grove, Oregon 97116 nancy@pacificu.edu Anyone who has worked with matroids has come away with the conviction that matroids are one of the richest and most useful ideas of our day. —Gian Carlo Rota [10] Why matroids? Have you noticed hidden connections between seemingly unrelated mathematical ideas? Strange that finding roots of polynomials can tell us important things about how to solve certain ordinary differential equations, or that computing a determinant would have anything to do with finding solutions to a linear system of equations. But this is one of the charming features of mathematics—that disparate objects share similar traits. Properties like independence appear in many contexts. Do you find independence everywhere you look? In 1933, three Harvard Junior Fellows unified this recurring theme in mathematics by defining a new mathematical object that they dubbed matroid [4]. Matroids are everywhere, if only we knew how to look. What led those junior-fellows to matroids? The same thing that will lead us: Ma- troids arise from shared behaviors of vector spaces and graphs. We explore this natural motivation for the matroid through two examples and consider how properties of in- dependence surface. We first consider the two matroids arising from these examples, and later introduce three more that are probably less familiar. Delving deeper, we can find matroids in arrangements of hyperplanes, configurations of points, and geometric lattices, if your tastes run in that direction. -
Strongly Connected Components and Biconnected Components
Strongly Connected Components and Biconnected Components Daniel Wisdom 27 January 2017 1 2 3 4 5 6 7 8 Figure 1: A directed graph. Credit: Crash Course Coding Companion. 1 Strongly Connected Components A strongly connected component (SCC) is a set of vertices where every vertex can reach every other vertex. In an undirected graph the SCCs are just the groups of connected vertices. We can find them using a simple DFS. This works because, in an undirected graph, u can reach v if and only if v can reach u. This is not true in a directed graph, which makes finding the SCCs harder. More on that later. 2 Kernel graph We can travel between any two nodes in the same strongly connected component. So what if we replaced each strongly connected component with a single node? This would give us what we call the kernel graph, which describes the edges between strongly connected components. Note that the kernel graph is a directed acyclic graph because any cycles would constitute an SCC, so the cycle would be compressed into a kernel. 3 1,2,5,6 4,7 8 Figure 2: Kernel graph of the above directed graph. 3 Tarjan's SCC Algorithm In a DFS traversal of the graph every SCC will be a subtree of the DFS tree. This subtree is not necessarily proper, meaning that it may be missing some branches which are their own SCCs. This means that if we can identify every node that is the root of its SCC in the DFS, we can enumerate all the SCCs. -
Incremental Dynamic Construction of Layered Polytree Networks )
440 Incremental Dynamic Construction of Layered Polytree Networks Keung-Chi N g Tod S. Levitt lET Inc., lET Inc., 14 Research Way, Suite 3 14 Research Way, Suite 3 E. Setauket, NY 11733 E. Setauket , NY 11733 [email protected] [email protected] Abstract Many exact probabilistic inference algorithms1 have been developed and refined. Among the earlier meth ods, the polytree algorithm (Kim and Pearl 1983, Certain classes of problems, including per Pearl 1986) can efficiently update singly connected ceptual data understanding, robotics, discov belief networks (or polytrees) , however, it does not ery, and learning, can be represented as incre work ( without modification) on multiply connected mental, dynamically constructed belief net networks. In a singly connected belief network, there is works. These automatically constructed net at most one path (in the undirected sense) between any works can be dynamically extended and mod pair of nodes; in a multiply connected belief network, ified as evidence of new individuals becomes on the other hand, there is at least one pair of nodes available. The main result of this paper is the that has more than one path between them. Despite incremental extension of the singly connect the fact that the general updating problem for mul ed polytree network in such a way that the tiply connected networks is NP-hard (Cooper 1990), network retains its singly connected polytree many propagation algorithms have been applied suc structure after the changes. The algorithm cessfully to multiply connected networks, especially on is deterministic and is guaranteed to have networks that are sparsely connected. These methods a complexity of single node addition that is include clustering (also known as node aggregation) at most of order proportional to the number (Chang and Fung 1989, Pearl 1988), node elimination of nodes (or size) of the network. -
Characterizing Simultaneous Embedding with Fixed Edges
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by computer science publication server Characterizing Simultaneous Embedding with Fixed Edges J. Joseph Fowler1, Michael J¨unger2, Stephen G. Kobourov1, and Michael Schulz2 1 University of Arizona, USA {jfowler,kobourov}@cs.arizona.edu ⋆ 2 University of Cologne, Germany {mjuenger,schulz}@informatik.uni-koeln.de ⋆⋆ Abstract. A set of planar graphs share a simultaneous embedding if they can be drawn on the same vertex set V in the plane without crossings between edges of the same graph. Fixed edges are common edges between graphs that share the same Jordan curve in the simultaneous drawings. While any number of planar graphs have a simultaneous embedding without fixed edges, determining which graphs always share a simultaneous embedding with fixed edges (SEFE) has been open. We partially close this problem by giving a necessary condition to determine when pairs of graphs have a SEFE. 1 Introduction In many practical applications including the visualization of large graphs and very-large-scale in- tegration (VLSI) of circuits on the same chip, edge crossings are undesirable. A single vertex set can suffice in which multiple edge sets correspond to different edge colors or circuit layers. While the union of any pair of edge sets may be nonplanar, a planar drawing of each layer may still be possible, as crossings between edges of distinct edge sets is permitted. This corresponds to the problem of simultaneous embedding (SE). Without restrictions on the types of edges used, this problem is trivial since any number of planar graphs can be drawn on the same fixed set of vertex locations [6]. -
Near-Linear Time Constant-Factor Approximation Algorithm for Branch-Decomposition of Planar Graphs
Near-Linear Time Constant-Factor Approximation Algorithm for Branch-Decomposition of Planar Graphs1 Qian-Ping Gu and Gengchun Xu School of Computing Science, Simon Fraser University Burnaby BC Canada V5A1S6 [email protected],[email protected] Abstract: We give an algorithm which for an input planar graph G of n vertices and integer k, in min{O(n log3 n),O(nk2)} time either constructs a branch-decomposition of G k+1 with width at most (2 + δ)k, δ > 0 is a constant, or a (k + 1) × ⌈ 2 ⌉ cylinder minor of G implying bw(G) >k, bw(G) is the branchwidth of G. This is the first O˜(n) time constant- factor approximation for branchwidth/treewidth and largest grid/cylinder minors of planar graphs and improves the previous min{O(n1+ǫ),O(nk2)} (ǫ> 0 is a constant) time constant- factor approximations. For a planar graph G and k = bw(G), a branch-decomposition of g k width at most (2 + δ)k and a g × 2 cylinder/grid minor with g = β , β > 2 is constant, can be computed by our algorithm in min{O(n log3 n log k),O(nk2 log k)} time. Key words: Branch-/tree-decompositions, grid minor, planar graphs, approximation algo- rithm. 1 Introduction The notions of branchwidth and branch-decomposition introduced by Robertson and Sey- mour [31] in relation to the notions of treewidth and tree-decomposition have important algorithmic applications. The branchwidth bw(G) and the treewidth tw(G) of graph G 3 are linearly related: max{bw(G), 2} ≤ tw(G)+1 ≤ max{⌊ 2 bw(G)⌋, 2} for every G with more than one edge, and there are simple translations between branch-decompositions and tree-decompositions that meet the linear relations [31]. -
A Framework for the Evaluation and Management of Network Centrality ∗
A Framework for the Evaluation and Management of Network Centrality ∗ Vatche Ishakiany D´oraErd}osz Evimaria Terzix Azer Bestavros{ Abstract total number of shortest paths that go through it. Ever Network-analysis literature is rich in node-centrality mea- since, researchers have proposed different measures of sures that quantify the centrality of a node as a function centrality, as well as algorithms for computing them [1, of the (shortest) paths of the network that go through it. 2, 4, 10, 11]. The common characteristic of these Existing work focuses on defining instances of such mea- measures is that they quantify a node's centrality by sures and designing algorithms for the specific combinato- computing the number (or the fraction) of (shortest) rial problems that arise for each instance. In this work, we paths that go through that node. For example, in a propose a unifying definition of centrality that subsumes all network where packets propagate through nodes, a node path-counting based centrality definitions: e.g., stress, be- with high centrality is one that \sees" (and potentially tweenness or paths centrality. We also define a generic algo- controls) most of the traffic. rithm for computing this generalized centrality measure for In many applications, the centrality of a single node every node and every group of nodes in the network. Next, is not as important as the centrality of a group of we define two optimization problems: k-Group Central- nodes. For example, in a network of lobbyists, one ity Maximization and k-Edge Centrality Boosting. might want to measure the combined centrality of a In the former, the task is to identify the subset of k nodes particular group of lobbyists. -
Masters Thesis: an Approach to the Automatic Synthesis of Controllers with Mixed Qualitative/Quantitative Specifications
An approach to the automatic synthesis of controllers with mixed qualitative/quantitative specifications. Athanasios Tasoglou Master of Science Thesis Delft Center for Systems and Control An approach to the automatic synthesis of controllers with mixed qualitative/quantitative specifications. Master of Science Thesis For the degree of Master of Science in Embedded Systems at Delft University of Technology Athanasios Tasoglou October 11, 2013 Faculty of Electrical Engineering, Mathematics and Computer Science (EWI) · Delft University of Technology *Cover by Orestis Gartaganis Copyright c Delft Center for Systems and Control (DCSC) All rights reserved. Abstract The world of systems and control guides more of our lives than most of us realize. Most of the products we rely on today are actually systems comprised of mechanical, electrical or electronic components. Engineering these complex systems is a challenge, as their ever growing complexity has made the analysis and the design of such systems an ambitious task. This urged the need to explore new methods to mitigate the complexity and to create sim- plified models. The answer to these new challenges? Abstractions. An abstraction of the the continuous dynamics is a symbolic model, where each “symbol” corresponds to an “aggregate” of states in the continuous model. Symbolic models enable the correct-by-design synthesis of controllers and the synthesis of controllers for classes of specifications that traditionally have not been considered in the context of continuous control systems. These include qualitative specifications formalized using temporal logics, such as Linear Temporal Logic (LTL). Be- sides addressing qualitative specifications, we are also interested in synthesizing controllers with quantitative specifications, in order to solve optimal control problems. -
Efficient Graph Reachability Query Answering Using Tree Decomposition
Efficient Graph Reachability Query Answering using Tree Decomposition Fang Wei Computer Science Department, University of Freiburg, Germany Abstract. Efficient reachability query answering in large directed graphs has been intensively investigated because of its fundamental importance in many application fields such as XML data processing, ontology rea- soning and bioinformatics. In this paper, we present a novel indexing method based on the concept of tree decomposition. We show analytically that this intuitive approach is both time and space efficient. We demonstrate empirically the efficiency and the effectiveness of our method. 1 Introduction Querying and manipulating large scale graph-like data has attracted much atten- tion in the database community, due to the wide application areas of graph data, such as GIS, XML databases, bioinformatics, social network, and ontologies. The problem of reachability test in a directed graph is among the fundamental operations on the graph data. Given a digraph G = (V; E) and u; v 2 V , a reachability query, denoted as u ! v, ask: is there a path from u to v? One of the fundamental queries on biological networks is for instance, to find all genes whose expressions are directly or indirectly influenced by a given molecule [15]. Given the graph representation of the genes and regulation events, the question can also be reduced to the reachability query in a directed graph. Recently, tree decomposition methodologies have been successfully applied to solving shortest path query answering over undirected graphs [17]. Briefly stated, the vertices in a graph G are decomposed into a tree in which each node contains a set of vertices in G.