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Antimicrobial Resistant Escherichia Coli in Alberta's Rural Well Water
University of Calgary PRISM: University of Calgary's Digital Repository Graduate Studies The Vault: Electronic Theses and Dissertations 2017 Antimicrobial Resistant Escherichia coli in Alberta's Rural Well Water Meyer, Kelsey Meyer, K. (2017). Antimicrobial Resistant Escherichia coli in Alberta's Rural Well Water (Unpublished master's thesis). University of Calgary, Calgary, AB. doi:10.11575/PRISM/24938 http://hdl.handle.net/11023/3976 master thesis University of Calgary graduate students retain copyright ownership and moral rights for their thesis. You may use this material in any way that is permitted by the Copyright Act or through licensing that has been assigned to the document. For uses that are not allowable under copyright legislation or licensing, you are required to seek permission. Downloaded from PRISM: https://prism.ucalgary.ca UNIVERSITY OF CALGARY Antimicrobial Resistant Escherichia coli in Alberta’s Rural Well Water by Kelsey Meyer A THESIS SUBMITTED TO THE FACULTY OF GRADUATE STUDIES IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE GRADUATE PROGRAM IN MICROBIOLOGY AND INFECTIOUS DISEASES CALGARY, ALBERTA JULY, 2017 © Kelsey Meyer 2017 Abstract The consumption of rural well water (RWW) contaminated with antimicrobial resistant (AMR) Escherichia coli has been linked to human carriage of resistance. Our objective was to determine whether AMR and extended spectrum beta lactamase (ESBL) producing E.coli are present in Alberta’s RWW. Resistant isolates were detected with an agar screen on (up to) 20 isolates from each sample, and AMR was measured with NARMS Sensititre™ panels. Disk diffusion assays detected ESBL-producing E.coli, and spatial clusters of AMR E.coli were assessed using ArcGIS (version 10.4.1) and SaTScan™ (version 9.4.4). -
University of Cape Town
Town The copyright of this thesis rests with the University of Cape Town. No quotation from it or information derivedCape from it is to be published without full acknowledgement of theof source. The thesis is to be used for private study or non-commercial research purposes only. University Isolation And Molecular CharacterizationTown Of Shiga Toxin Producing Escherichia coli In Cattle, Water And Diarrhoeal Children From The PastoralCape Systems Of Southwesternof Uganda Samuel Majalija UniversityThesis presented for the degree of DOCTOR OF PHILOSOPHY Faculty of Health Sciences UNIVERSITY OF CAPE TOWN February 2009 Town Isolation and Molecular Characterisation of Shiga Toxin Producing Escherichia coli in Cattle, Water and Diarrhoeal Children from the Pastoral Systems of SouthwesternCape Uganda Copyright c Samuel Majalija 2009. of All right reserved. No part of this thesis may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopying, recording, or in any information storage and retrieval system, without permission in writing from the author or the University of Cape Town. Typeset using PDFLATEX as implemented in MIKTEX. Printed in SouthUniversity Africa at: University of Cape Town, Private Bag, 7700, Rondebosch. Cape Town. Specially dedicated to my parents Town Methuselah andCape Glads Majalija of and wife Mabel Majalija University Declaration I...................................................................... declare that the work presented in this thesis is my original work, except where indicated, and that it has not been submitted before for any degree or examination at any university. Town Signed: ........................................... Date: Cape of University Acknowledgements This study was conducted under the supervision of associate Professor Gay B. Elisha and co-supervisor Dr Segal Heidi both of University of Cape Town, and associate Professor Francis Ejobi from Makerere University. -
The Interaction Between Pseudomonas Syringae Pv. Tomato and the Lectin from Tomato (Lycopersicon Esculentum) a Possible Role in Determining Pathogen Specificity
University of Windsor Scholarship at UWindsor Electronic Theses and Dissertations Theses, Dissertations, and Major Papers 1-1-1985 The interaction between pseudomonas syringae pv. tomato and the lectin from tomato (Lycopersicon esculentum) a possible role in determining pathogen specificity. Jamie Seymour Pitts University of Windsor Follow this and additional works at: https://scholar.uwindsor.ca/etd Recommended Citation Pitts, Jamie Seymour, "The interaction between pseudomonas syringae pv. tomato and the lectin from tomato (Lycopersicon esculentum) a possible role in determining pathogen specificity." (1985). Electronic Theses and Dissertations. 6903. https://scholar.uwindsor.ca/etd/6903 This online database contains the full-text of PhD dissertations and Masters’ theses of University of Windsor students from 1954 forward. These documents are made available for personal study and research purposes only, in accordance with the Canadian Copyright Act and the Creative Commons license—CC BY-NC-ND (Attribution, Non-Commercial, No Derivative Works). Under this license, works must always be attributed to the copyright holder (original author), cannot be used for any commercial purposes, and may not be altered. Any other use would require the permission of the copyright holder. Students may inquire about withdrawing their dissertation and/or thesis from this database. For additional inquiries, please contact the repository administrator via email ([email protected]) or by telephone at 519-253-3000ext. 3208. CANADIAN THESES ON MICROFICHE THESES CANADIENNES SUB MICROFICHE National Library of Canada BibliothPque rationale du Canada • I* Collections Development Bran,ch Direction dti dPveioppement des collections Canadian Theses on : Service des theses canadiennes Microfiche Service • ' sur microfiche .■ ■ Ottawa/Canada K1A0N4 . -
The Correlation Between Tolerance to Low Water Activity and High Hydrostatic Pressure in Shiga Toxin Producing Escherichia Coli
The Correlation between Tolerance to Low Water Activity and High Hydrostatic Pressure in Shiga Toxin Producing Escherichia coli BY Fahad Bazaid A Thesis Presented to The University of Guelph In partial fulfillment of requirements for the degree of Doctor of Philosophy in Food Science Guelph, Ontario, Canada © Fahad Bazaid, March 2019 ABSTRACT THE CORRELATION BETWEEN TOLERANCE TO LOW WATER ACTIVITY AND HIGH HYDROSTATIC PRESSURE IN SHIGA TOXIN PRODUCING ESCHERICHIA COLI Fahad Bazaid University of Guelph, 2019 Advisors: Dr. Keith Warriner Dr. Andrew Kropinski Dr. Don Mercer Dr. Tatiana Koutchma High hydrostatic pressure processing (HHP) is extensively applied for the non-thermal pasteurization of foods. One notable feature of HHP mediated inactivation of microbes is the large variation in lethality between strains and the influence of the food matrix. In the following it was hypothesized that the barotolerance of Shiga Toxin producing Escherichia coli could be correlated to tolerance to low water activity environments. The study evaluated the barotolerance of members of the Top 6 STEC serotypes and found variation with O26: H11 and O45: H2 exhibiting higher tolerance to pressure compared to the other bacterial types tested. A negative correlation was found between resistance to high pressure and the NaCl concentration under which E. coli could grow under. For example, E. coli O26: H11 exhibited the highest tolerance to pressure, within 300 MPa, but could only grow under NaCl up to 2.4% w/v. In contrast, E. coli O121: H19 was sensitive to pressure, but could grow in the presence of 6% NaCl. The results suggested ii that the induction of the stress-response was the likely reason for high barotolerance in salt sensitive strains vs resistant. -
Ocorrência De Fatores De Virulência Em Estirpes De Escherichia Coli Isoladas De Fezes De Cães Errantes
Ocorrência de fatores de virulência em estirpes de Escherichia coli isoladas de fezes de cães errantes. 401 OCORRÊNCIA DE FATORES DE VIRULÊNCIA EM ESTIRPES DE ESCHERICHIA COLI ISOLADAS DE FEZES DE CÃES ERRANTES A.C.M.D.G. von Sydow, J.A. Coogan, A.M. Moreno, P.A. Melville, N.R. Benites Universidade de São Paulo, Faculdade de Medicina Veterinária e Zootecnia, Departamento de Medicina Veterinária Preventiva e Saúde Animal, Av. Prof. Dr. Orlando Marques de Paiva, 87, CEP 05508-000, São Paulo, SP, Brasil. E-mail: [email protected] RESUMO Escherichia coli pode causar doenças em humanos e animais, tais como infecções do trato urinário, septicemia, meningites e gastroenterites. Cães assintomáticos podem participar da cadeia epidemiológica como reservatório de E. coli patogênica ao homem. Este estudo objetivou avaliar a ocorrência de E. coli patogênica ao homem em fezes de cães errantes sem sintomas de colibacilose e assim averiguar a participação do cão como fonte de infecção de colibacilose humana. Foram coletadas 220 amostras de fezes de animais capturados por diferentes Centros de Controle de Zoonoses do Estado de São Paulo. As amostras foram submetidas a exames microbiológicos sendo isoladas 196 (89,09%) estirpes de E. coli, cujos genes de fatores de virulência foram detectados por PCR. Cento e vinte e três (62,75%) estirpes apresentaram um ou mais dos fatores de virulência estudados. Dezesseis (8,16%) foram positivas para afa, 54 (27,55%) para sfa, 38 (19,38%) para pap, 66 (33,67%) para aer, 31 (15,81%) para cnf, 13 (6,63%) para hly, 1 (0,51%) para VT2 e nenhuma das linhagens foi positiva para LT, STa e STb. -
Molecular Evaluation and Antimicrobial Susceptibility Testing of Escherichia Coli Isolates Collected from Various Food Products in Turkey
MOLECULAR EVALUATION AND ANTIMICROBIAL SUSCEPTIBILITY TESTING OF ESCHERICHIA COLI ISOLATES COLLECTED FROM VARIOUS FOOD PRODUCTS IN TURKEY A THESIS SUBMITTED TO THE GRADUATE SCHOOL OF NATURAL AND APPLIED SCIENCES OF MIDDLE EAST TECHNICAL UNIVERSITY BY EMMANUEL OWUSU KYERE IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE IN BIOTECHNOLOGY JULY 2014 ii Approval of the thesis: MOLECULAR EVALUATION AND ANTIMICROBIAL SUSCEPTIBILITY TESTING OF ESCHERICHIA COLI ISOLATES COLLECTED FROM VARIOUS FOOD PRODUCTS IN TURKEY Submitted by EMMANUEL OWUSU KYERE in partial fulfillment of the requirements for the degree of Master of Science in Biotechnology Department, Middle East Technical University by, Prof. Dr. Canan Özgen _____________ Dean, Graduate School of Natural and Applied Sciences Prof. Dr. Filiz Bengü Dilek _____________ Head of Department, Biotechnology Asist. Prof. Dr. Yeşim Soyer _____________ Supervisor, Food Engineering Dept., METU Asist. Prof. Dr. Dilek Avşaroğlu Erkan _____________ Co-supervisor, Agric. Biotech. Dept., Ahi Evran University Examining Committee Members: Assoc. Prof. Dr. Çağdaş Son _____________ Biology Dept., METU Asist. Prof. Dr. Yeşim Soyer _____________ Food Engineering Dept., METU Asist. Prof. Dr. Mecit H. Öztop _____________ Food Engineering Dept., METU Asist. Prof. Dr. Tuba H. Ergüder _____________ Environmental Engineering Dept., METU Asist. Prof. Dr. Umut Yücel _____________ Food Engineering Dept., METU Date: 23.07.2014 iii I hereby declare that all information in this document has been obtained and presented in accordance with academic rules and ethical conduct. I also declare that, as required by these rules and conduct, I have fully cited and referenced all materials and results that are not original to this work. -
Fotential of .F'seudomonas CEPACIA AS A
-fOTENTIAL OF .f'SEUDOMONAS- CEPACIA AS A BIOLOGICAL CONTROL AGENT FOR SELECTED SOILBORI\IE PATHOGENS By MANSOUR »ALIGH Bachelor of Science Arak College of Sciences Tehran, Iran 1975 Master of Science Eastern New Mexico University Portales, New Mexico 1978 Submitted to the Faculty of the Graduate College of the Oklahoma State University in partial fulfillment of the requirements for the Degree of MASTER OF SCIENCE December, 1991 ~\~J~_;.j") V=t-"\ \ V-.J\~to\) POTENTIAL OF PSEUDOMONAS CEPACIA AS A BIOLOGICAL CONTROL AGENT FOR SELECTED SOILBORNE PATHOGENS Thesis Approved: Dean of the Graduate College ii Dedicated to my lovely wife Elaheh Amouzadeh iii : IF~- J: ~· cout.P . L.~~N: , - 1"i·11Ntc=--:. oN'·'. MY FEer rP.-BE A GeNJU.,S" r - .1 . • ~ · . • iv ACKNOWLEDGMENTS I wish to express my sincere gratitude to Dr. Kenneth E. Conway, my major professor, without whose continuous support, encouragement and concern this work would have not been possible. I have benefited from his insight and knowledge greatly. I am also indebted to him for his trust, guidance and friendship. I am thankful to Dr. Carol Bender and Dr. Sharon von Broembsen, members of my committee, for their constructive suggestions throughout this investigation. I also like to express my special thank to Dr. Larry Littlefield, head of plant pathology department for his sincere advice and to give my regards to the faculty of the plant pathology department. I would like to thank Dr. Martin A. Delgado for his supervision and Dr. Margaret Essenberg for her technical advice. My gratitude also goes to Dr. Paul W. -
Toxin E. Coli Serogroups on Fresh Produce
Development of a Phage Cocktail to Control the Top 7 Shiga -toxin E. coli Serogroups on Fresh Produce by Yiran Ding A Thesis submitted to the Faculty of Graduate Studies of The University of Manitoba in partial fulfilment of the requirement of the degree of MASTER OF SCIENCE Department of Food and Nutritional Sciences University of Manitoba Winnipeg Copyright © 2018 by Yiran Ding I I hereby declare that I am the sole author of this thesis. I authorize the University of Manitoba to lend this thesis to other institutions or individuals for the purpose of scholarly research. Yiran Ding I further authorize the University of Manitoba to reproduce this thesis by photocopying or by other means in total or in part, at the request of other institutions or individuals for the purpose of scholarly research. Yiran Ding II ACKNOWLEDGMENTS First of all, I want to thank my parents, Luosi Ding and Xu Li, for their encouragements and supports in every way I can think about throughout my life. I would never have been able to achieve anything without their love and care. I also would like to thank my grandparents for believing in me and encouraging me to go through the difficult times. I owe my sincerest gratitude to my relatives back home, for staying in touch and warming my heart in the coldest winter. I am extremely thankful to my Advisor, Dr. Narvaez, for her generous, knowledge, patience, encouragement, and inspiration for me to explore deeper into the topics. She provided me many chances to learn and triggered my passion for food and microbiology. -
Whole Genome Sequence Typing and Analysis of Non-O157 Stec
WHOLE GENOME SEQUENCE TYPING AND ANALYSIS OF NON-O157 STEC January 2020 1 Scottish E. coli O157/STEC Reference Laboratory Department of Laboratory Medicine Royal Infirmary of Edinburgh Little France Edinburgh EH16 4SA Tel: +44 (0)131 2426013 Main Authors: Lesley Allison, Principal Scientist, Scottish E. coli O157/STEC Reference Laboratory Anne Holmes, Clinical Scientist, Scottish E. coli O157/STEC Reference Laboratory Mary Hanson, Director, Scottish E. coli O157/STEC Reference Laboratory Contributing Author: Melissa Ward, Sir Henry Wellcome Postdoctoral Research Fellowship (WT103953MA), University of Edinburgh (E. coli O26:H11 phylogenetic analysis) 1 CONTENTS 1 Scientific and lay summaries 1.1 Scientific summary 1.2 Lay summary 1.3 Glossary 2 Introduction 2.1 Background 2.1.1 Shiga toxin-producing Escherichia coli (STEC) 2.1.2 Assessment of Pathogenicity 2.1.3 Assigning Pathogenic Potential 2.1.4 Sources of Infection 2.1.5 The Scottish E. coli O157/STEC Reference Laboratory (SERL) 2.1.6 Guidance for Screening for STEC in Scotland 2.1.7 Laboratory Diagnosis 2.1.8 Isolation of STEC 2.1.9 Strain Typing 2.1.10 Prevalence of STEC in Scotland 2.1.11 The Scottish Culture Collection 2.2 Aims of the study 3 Methods 3.1 The Study Group 3.2 DNA extraction, Library Preparation and Sequencing 3.3 Data Analysis 3.4 Phylogenomic Analysis. 3.4.1 Core genome (cg) MLST 3.4.2 Reference Based Assembly of E. coli O26:H11 4 Results 4.1 Isolates Confirmed as non-O157 E. coli by Diagnostic Laboratories 4.2 Molecular typing and Characterisation of non-O157 STEC 4.2.1 Species Identification and Serotyping 4.2.2 7-Gene MLST 4.2.3 Shiga Toxin Gene Profile 4.2.4 Virulence Gene Detection 4.2.5 Acquired Antimicrobial Resistance 4.3 Phylogenetic Overview of Non-O157 STEC 4.4 Potential to Cause Clinical Disease – JEMRA Level Assignment 4.5 Predominant, Emerging and Hybrid Strains: a comparison with published data 4.5.1 E. -
Survival of Acid-Adapted Escherichia Coli O157:H7 and Non-O157:H7
The Pennsylvania State University The Graduate School College of Agricultural Sciences SURVIVAL OF ACID-ADAPTED ESCHERICHIA COLI O157:H7 AND NON-O157:H7 SHIGA TOXIN-PRODUCING E. COLI (STEC) DURING PROCESSING OF DRY, FERMENTED SAUSAGES A Dissertation in Food Science by Minerva Rivera © 2017 Minerva Rivera Submitted in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy December 2017 i The dissertation of Minerva Rivera was reviewed and approved* by the following: Catherine N. Cutter Professor of Food Science Food Safety Extension Specialist – Muscle Foods Dissertation Advisor Chair of Committee Jonathan A. Campbell Assistant Professor of Meat Science Extension Meat Specialist Edward G. Dudley Associate Professor of Food Science Sara Milillo Food Science Faculty Director of Math and Science at Bay Path University Robert F. Roberts Professor of Food Science Head of the Department of Food Science *Signatures are on file in the Graduate School ii Abstract Escherichia coli O157:H7 was first recognized as a human pathogen following outbreaks of hemorrhagic colitis in the early 1980s. Due to the infectious dose of E. coli O157:H7, the severity of the disease, and the possibility of lifelong sequalae, the U. S. Department of Agriculture-Food Safety and Inspection Service (USDA-FSIS) declared it as an adulterant in raw ground beef in 1994. In 2012, non-O157:H7 Shiga toxin-producing E. coli (STEC) serogroups (O26, O45, O103, O111, O121, and O145) also were declared adulterants in raw beef products by USDA- FSIS. Until recently, the majority of the research done on interventions used to control STEC has been done on E. -
Maquetación 1
MINISTERIO DE MEDIO AMBIENTEY MEDIO RURALY MARINO SOCIEDAD ESPAÑOLA DE FITOPATOLOGÍA PATÓGENOS DE PLANTAS DESCRITOS EN ESPAÑA 2ª Edición COLABORADORES Elena González Biosca Vicente Pallás Benet Ricardo Flores Pedauye Dirk Jansen José Luis Palomo Gómez José María Melero Vara Miguel Juárez Gómez Javier Peñalver Navarro Vicente Pallás Benet Alfredo Lacasa Plasencia Ramón Peñalver Navarro Amparo Laviña Gomila Ana María Pérez-Sierra Francisco J. Legorburu Faus Fernando Ponz Ascaso Pablo Llop Pérez ASESORES María Dolores Romero Duque Pablo Lunello Javier Romero Cano María Ángeles Achón Sama Jordi Luque i Font Luis A. Álvarez Bernaola Montserrat Roselló Pérez Ester Marco Noales Remedios Santiago Merino Miguel A. Aranda Regules Vicente Medina Piles Josep Armengol Fortí Felipe Siverio de la Rosa Emilio Montesinos Seguí Antonio Vicent Civera Mariano Cambra Álvarez Carmina Montón Romans Antonio de Vicente Moreno Miguel Cambra Álvarez Pedro Moreno Gómez Miguel Escuer Cazador Enrique Moriones Alonso José E. García de los Ríos Jesús Murillo Martínez Fernando García-Arenal Jesús Navas Castillo CORRECTORA DE Pablo García Benavides Ventura Padilla Villalba LA EDICIÓN Ana González Fernández Ana Palacio Bielsa María José López López Las fotos de la portada han sido cedidas por los socios de la Sociedad Española de Fitopatolo- gía, Dres. María Portillo, Carolina Escobar Lucas y Miguel Cambra Álvarez Secretaría General Técnica: Alicia Camacho García. Subdirector General de Información al ciu- dadano, Documentación y Publicaciones: José Abellán Gómez. Director -
Pseudomonas Fluorescentes Provenientes Da Rizosfera De Solanáceas No
UNIVERSIDADE DE BRASÍLIA INSTITUTO DE CIÊNCIAS BIOLÓGICAS DEPARTAMENTO DE FITOPATOLOGIA PROGRAMA DE PÓS-GRADUAÇÃO EM FITOPATOLOGIA Pseudomonas fluorescentes provenientes da rizosfera de solanáceas no controle de Ralstonia solanacearum em tomateiro JOSEFA NEIANE GOULART BATISTA Brasília - DF 2015 JOSEFA NEIANE GOULART BATISTA Pseudomonas fluorescentes provenientes da rizosfera de solanáceas no controle de Ralstonia solanacearum em tomateiro Dissertação apresentada à Universidade de Brasília como requisito parcial para a obtenção do título de Mestre em Fitopatologia pelo Programa de Pós Graduação em Fitopatologia. Orientador Carlos Hidemi Uesugi, Dr. BRASÍLIA DISTRITO FEDERAL – BRASIL 2015 FICHA CATALOGRÁFICA Batista, G. N. J. Pseudomonas fluorescentes provenientes da rizosfera de solanáceas no controle de Ralstonia solanacearum em tomateiro. Josefa Neiane Goulart Batista. Brasília, 2015 Número de páginas p.: 49. Dissertação de mestrado - Programa de Pós-Graduação em Fitopatologia, Universidade de Brasília, Brasília. Murcha Bacteriana, controle biológico, Pseudomonas, tomate. I. Universidade de Brasília. PPG/FIT. II. Título. Pseudomonas fluorescentes provenientes da rizosfera de solanáceas no controle de Ralstonia solanacearum em tomateiro. Dedico a minha filha Júlia, ao meu pai Josvaldo, a minha mãe Nelma, a minha irmã Josiane e minha sobrinha Giovanna. Agradecimentos A Deus. Aos meus pais Josvaldo e Nelma. A minha filha Júlia, minha irmã Josiane e minha sobrinha Giovanna. Ao meu orientador Professor Carlos Hidemi Uesugi. Aos colegas do mestrado e doutorado Elenice, João Gilberto, Pedro Victor, Ricardo, Cleia, Maurício, Rafaela, Maria Geane, Karina, Carina. Aos funcionários do departamento de fitopatologia José Ribamar, José Cezar, Arlindo, Arenildo, Maria e Mariza Sanchez (in memoriam). Aos professores: Juvenil Cares, Cléber Furlanetto, Helson Mário, Adalberto Café, Rita de Cássia Pereira Carvalho, Renato Resende, Alice Nagata, Robert Miller, José Carmine Dianese e Luíz Eduardo Blum.