Polydorid Polychaetes on Farmed Molluscs: Distribution, Spread and Factors Contributing to Their Success
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A Preliminary Study on the Interfacial Strength of Red Abalone
University of Vermont ScholarWorks @ UVM Graduate College Dissertations and Theses Dissertations and Theses 2016 A Preliminary Study On The nI terfacial Strength Of Red Abalone Saleh Jaman Alghamdi University of Vermont Follow this and additional works at: https://scholarworks.uvm.edu/graddis Part of the Civil Engineering Commons Recommended Citation Alghamdi, Saleh Jaman, "A Preliminary Study On The nI terfacial Strength Of Red Abalone" (2016). Graduate College Dissertations and Theses. 633. https://scholarworks.uvm.edu/graddis/633 This Thesis is brought to you for free and open access by the Dissertations and Theses at ScholarWorks @ UVM. It has been accepted for inclusion in Graduate College Dissertations and Theses by an authorized administrator of ScholarWorks @ UVM. For more information, please contact [email protected]. A PRELIMINARY STUDY ON THE INTERFACIAL STRENGTH OF RED ABALONE A Thesis Presented by Saleh J Alghamdi to The Faculty of the Graduate College of The University of Vermont In Partial Fulfillment of the Requirements for the Degree of Master of Science Specializing in Civil Engineering October, 2016 Defense Date: June 14, 2016 Thesis Examination Committee: Ting Tan, Ph.D, Advisor Jie Yang, Ph.D., Chairperson George Pinder, Ph.D. Cynthia J. Forehand, Ph.D., Dean of the Graduate College Abstract Nacre is a hierarchical material found within the tough shells of red abalone. Despite being composed of calcium carbonate, nacre exhibits remarkable mechanical properties resulting from the nanoscale brick-and-mortar structure made from aragonite polygons. The objective of this research is to elucidate the toughening mechanisms associated with the interfacial resistance of red abalone. -
Supplementary Tales
Metabarcoding reveals different zooplankton communities in northern and southern areas of the North Sea Jan Niklas Macher, Berry B. van der Hoorn, Katja T. C. A. Peijnenburg, Lodewijk van Walraven, Willem Renema Supplementary tables 1-5 Table S1: Sampling stations and recorded abiotic variables recorded during the NICO 10 expedition from the Dutch Coast to the Shetland Islands Sampling site name Coordinates (°N, °E) Mean remperature (°C) Mean salinity (PSU) Depth (m) S74 59.416510, 0.499900 8.2 35.1 134 S37 58.1855556, 0.5016667 8.7 35.1 89 S93 57.36046, 0.57784 7.8 34.8 84 S22 56.5866667, 0.6905556 8.3 34.9 220 S109 56.06489, 1.59652 8.7 35 79 S130 55.62157, 2.38651 7.8 34.8 73 S156 54.88581, 3.69192 8.3 34.6 41 S176 54.41489, 4.04154 9.6 34.6 43 S203 53.76851, 4.76715 11.8 34.5 34 Table S2: Species list and read number per sampling site Class Order Family Genus Species S22 S37 S74 S93 S109 S130 S156 S176 S203 Copepoda Calanoida Acartiidae Acartia Acartia clausi 0 0 0 72 0 170 15 630 3995 Copepoda Calanoida Acartiidae Acartia Acartia tonsa 0 0 0 0 0 0 0 0 23 Hydrozoa Trachymedusae Rhopalonematidae Aglantha Aglantha digitale 0 0 0 0 1870 117 420 629 0 Actinopterygii Trachiniformes Ammodytidae Ammodytes Ammodytes marinus 0 0 0 0 0 263 0 35 0 Copepoda Harpacticoida Miraciidae Amphiascopsis Amphiascopsis cinctus 344 0 0 992 2477 2500 9574 8947 0 Ophiuroidea Amphilepidida Amphiuridae Amphiura Amphiura filiformis 0 0 0 0 219 0 0 1470 63233 Copepoda Calanoida Pontellidae Anomalocera Anomalocera patersoni 0 0 586 0 0 0 0 0 0 Bivalvia Venerida -
New Insights in the Biogeographical Distributions of Two Spionidae (Annelida) from the NE Atlantic and Mediterranean French Coasts
Zoosymposia 19: 173–184 (2020) ISSN 1178-9905 (print edition) https://www.mapress.com/j/zs ZOOSYMPOSIA Copyright © 2020 · Magnolia Press ISSN 1178-9913 (online edition) https://doi.org/10.11646/zoosymposia.19.1.18 http://zoobank.org/urn:lsid:zoobank.org:pub:7CF4D06E-47F9-48C5-9703-5CECFD9C1491 New insights in the biogeographical distributions of two Spionidae (Annelida) from the NE Atlantic and Mediterranean French coasts JÉRÔME JOURDE1,5*, NICOLAS LAVESQUE2,7, CÉLINE LABRUNE3,10, JEAN-MICHEL AMOUR- OUX3,12, PAULO BONIFÁCIO3,11, SUZIE HUMBERT2,8, BASTIEN LAMARQUE2,9, PIERRE-GUY SAURIAU1,6 & KARIN MEIßNER4,13 1La Rochelle Université, CNRS, UMR 7266 LIENSs, 2 rue Olympe de Gouges 17000 La Rochelle, France 2Université de Bordeaux, CNRS, UMR 5805 EPOC, Station Marine d’Arcachon, 2 rue du Professeur Jolyet, 33120 Arcachon, France 3Sorbonne Université, CNRS, UMR LECOB 8222, Laboratoire d’Ecogéochimie des Environnements Benthiques, Observatoire Océanologique de Banyuls, Avenue Pierre Fabre, 66650 Banyuls-sur-Mer, France 4Senckenberg Forschungsinstitute und Naturmuseen (SFN), Deutsches Zentrum für Marine Biodiversitätsforschung, Biozentrum Grindel, Martin-Luther-King-Platz 3, D-20146 Hamburg, Germany 5 [email protected], https://orcid.org/0000-0001-7260-8419 6 [email protected], https://orcid.org/0000-0002-5360-8728 7 [email protected], https://orcid.org/0000-0001-5701-2393 8 [email protected], https://orcid.org/0000-0003-4254-3567 9 [email protected], https://orcid.org/0000-0002-1418-9049 10 [email protected], -
Boccardia Proboscidea Class: Polychaeta, Sedentaria, Canalipalpata
Phylum: Annelida Boccardia proboscidea Class: Polychaeta, Sedentaria, Canalipalpata Order: Spionida, Spioniformia A burrowing spionid worm Family: Spionidae Taxonomy: Boccardia proboscidea’s senior Trunk: subjective synonym, Polydora californica Posterior: Pygidium is a round, flaring (Treadwell, 1914) and an un-typified name, disc with four unequal lobes where dorsal Spio californica (Fewkes, 1889) were both lobes are smaller (Fig. 4) (Hartman 1969). suppressed in 2012 by the International Parapodia: Biramous after first setiger. Commission on Zoological Nomenclature Podia on the first setiger are not lobed, small (ICZN, case 3520). The widely cited and and inconspicuous. The second setiger's used name, Boccardia proboscidea parapodial lobes become twice as large as (Hartman, 1940) was conserved (ICZN the first's, and continue to worm posterior. 2012). Setae (chaetae): All setae are simple and in- clude bunches of short, capillary spines to se- Description tiger six (except for modified setiger five) Size: Specimens up to 30–35 mm in length (Figs. 5a, b). A transverse row of and 1.5 mm in width, where length extends approximately eight neuropodial uncini with age (Hartman 1940). The illustrated (hooded hooks) with bifid (two-pronged) tips specimen has approximately 130 segments begins on setiger seven and continues to (Fig. 1). posterior end (Fig. 5e), with bunches of Color: Yellow-orange with red branchiae capillary setae below them (until setiger 11). and dusky areas around prostomium and Notosetae of setiger five are heavy, dark and parapodia (Hartman 1969). Sato-Okoshi arranged vertically in two rows of five with and Okoshi (1997) report black pigment fol- pairs of long, falcate spines (Fig. -
Annelida, Polychaeta, Chaetopteridae), with Re- Chaetopteridae), with Re-Description of M
2 We would like to thank the Zoological Journal of the Linnean Society, The Linnean Society of London and Blackwell Publishing for accepting our manuscript entitled “Description of a Description of a new species of Mesochaetopterus (Annelida, Polychaeta, new species of Mesochaetopterus (Annelida, Polychaeta, Chaetopteridae), with re- Chaetopteridae), with re-description of M. xerecus and an approach to the description of M. xerecus and an approach to the phylogeny of the family”, which has phylogeny of the family been published in the Journal issue Zool. J. Linnean Soc. 2008, 152: 201–225. D. MARTIN1,* J. GIL1, J. CARRERAS-CARBONELL1 and M. BHAUD2 By posting this version of the manuscript (i.e. pre-printed), we agree not to sell or reproduce the Article or any part of it for commercial purposes (i.e. for monetary gain on your own 1Centre d'Estudis Avançats de Blanes (CSIC), Carrer d’accés a la Cala Sant Francesc 14, account or on that of a third party, or for indirect financial gain by a commercial entity), and 17300 Blanes (Girona), Catalunya (Spain). we expect the same from the users. 2 Observatoire Océanologique de Banyuls, Université P. et M. Curie - CNRS, BP 44, 66650 As soon as possible, we will add a link to the published version of the Article at the editors Banyuls-sur-Mer, Cedex, France. web site. * Correspondence author: Daniel Martin. Centre d'Estudis Avançats de Blanes (CSIC), Carrer Daniel Martin, Joao Gil, Michel Bhaud & Josep Carreras-Carbonell d’accés a la Cala Sant Francesc 14, 17300 Blanes (Girona), Catalunya (Spain). Tel. +34972336101; Fax: +34 972337806; E-mail: [email protected]. -
Mitochondrial Genomes of Two Polydora
www.nature.com/scientificreports OPEN Mitochondrial genomes of two Polydora (Spionidae) species provide further evidence that mitochondrial architecture in the Sedentaria (Annelida) is not conserved Lingtong Ye1*, Tuo Yao1, Jie Lu1, Jingzhe Jiang1 & Changming Bai2 Contrary to the early evidence, which indicated that the mitochondrial architecture in one of the two major annelida clades, Sedentaria, is relatively conserved, a handful of relatively recent studies found evidence that some species exhibit elevated rates of mitochondrial architecture evolution. We sequenced complete mitogenomes belonging to two congeneric shell-boring Spionidae species that cause considerable economic losses in the commercial marine mollusk aquaculture: Polydora brevipalpa and Polydora websteri. The two mitogenomes exhibited very similar architecture. In comparison to other sedentarians, they exhibited some standard features, including all genes encoded on the same strand, uncommon but not unique duplicated trnM gene, as well as a number of unique features. Their comparatively large size (17,673 bp) can be attributed to four non-coding regions larger than 500 bp. We identifed an unusually large (putative) overlap of 14 bases between nad2 and cox1 genes in both species. Importantly, the two species exhibited completely rearranged gene orders in comparison to all other available mitogenomes. Along with Serpulidae and Sabellidae, Polydora is the third identifed sedentarian lineage that exhibits disproportionally elevated rates of mitogenomic architecture rearrangements. Selection analyses indicate that these three lineages also exhibited relaxed purifying selection pressures. Abbreviations NCR Non-coding region PCG Protein-coding gene Metazoan mitochondrial genomes (mitogenomes) usually encode the set of 37 genes, comprising 2 rRNAs, 22 tRNAs, and 13 proteins, encoded on both genomic strands. -
H1.1 Open Water
PAGE .............................................................. 392 ▼ H1.1 OPEN WATER The open-water offshore habitat covers an area of by which solar energy enters the marine ecosystem, Nova Scotia larger than the land mass, and includes similar to the layer of plants on land. The ocean H1.1 Open Water salt water in inlets, bays and estuaries. The water waters are distinctive in having fostered the origins and the organisms it supports are the primary means of life on the planet. Plate H1.1.1: Right Whale, north of Brier Island (Unit 912). Photo: BIOS Habitats Natural History of Nova Scotia, Volume I © Nova Scotia Museum of Natural History .............................................................. PAGE 393 ▼ FORMATION PLANTS Oceans are formed as part of major geological events. The plants of the open ocean are almost entirely Nova Scotia’s open-ocean habitats are part of the microscopic algae, collectively known as phyto- Atlantic Ocean, which opened during the Jurassic plankton. Many different species occur, including Period and has been in continuous existence ever representatives of the prochlorophytes (blue-green since. The quality and depth of the water column algae—evolutionary intermediates between bacteria have fluctuated in relation to post-glacial climatic and algae), diatoms, dinoflagellates, chrysomonads, conditions. cryptomonads, minute flagellates and unicellular reproductive stages of macroscopic algae. Phyto- H1.1 PHYSICAL ASPECTS plankton are often grouped in size classes: Open Water 1. Water conditions, such as salinity, temperature, macroplankton: 200–2000 micrometres, includes ice-formation, turbidity, light penetration, tides larger diatoms. and currents, are extremely variable in the microplankton: 20–200 micrometres, includes waters offshore. most diatoms. 2. Air-water interaction, surface-water turbulence nanoplankton: 2–20 micrometres, includes determines the level of wave and gas exchange. -
Status Review of the Pinto Abalone - Decision
Status Review of the Pinto Abalone - Decision TABLE OF CONTENTS Page Summary Sheet ............................................................................................................. 1 of 42 CR-102 ......................................................................................................................... 3 of 42 WAC 220-330-090 Crawfish, ((abalone,)) sea urchins, sea cucumbers, goose barnacles—Areas and seasons, personal-use fishery ........................................ 6 of 42 WAC 220-320-010 Shellfish—Classification .................................................................. 7 of 42 WAC 220-610-010 Wildlife classified as endangered species ....................................... 9 of 42 Status Report for the Pinto Abalone in Washington .................................................... 10 of 42 Summary Sheet Meeting dates: May 31, 2019 Agenda item: Status Review of the Pinto Abalone (Decision) Presenter(s): Chris Eardley, Puget Sound Shellfish Policy Coordinator Henry Carson, Fish & Wildlife Research Scientist Background summary: Pinto abalone are iconic marine snails prized as food and for their beautiful shells. Initially a state recreational fishery started in 1959; the pinto abalone fishery closed in 1994 due to signs of overharvest. Populations have continued to decline since the closure, most likely due to illegal harvest and densities too low for reproduction to occur. Populations at monitoring sites declined 97% from 1992 – 2017. These ten sites originally held 359 individuals and now hold 12. The average size of the remnant individuals continues to increase and wild juveniles have not been sighted in ten years, indicating an aging population with little reproduction in the wild. The species is under active restoration by the department and its partners to prevent local extinction. Since 2009 we have placed over 15,000 hatchery-raised juvenile abalone on sites in the San Juan Islands. Federal listing under the Endangered Species Act (ESA) was evaluated in 2014 but retained the “species of concern” designation only. -
Morphology, 18S Rrna Gene Sequence and Life History of a New Polydora Species (Polychaeta: Spionidae) from Northeastern Japan
Vol. 18: 31–45, 2013 AQUATIC BIOLOGY Published online January 23 doi: 10.3354/ab00485 Aquat Biol Morphology, 18S rRNA gene sequence and life history of a new Polydora species (Polychaeta: Spionidae) from northeastern Japan Wataru Teramoto*, Waka Sato-Okoshi, Hirokazu Abe, Goh Nishitani, Yoshinari Endo Laboratory of Biological Oceanography, Graduate School of Agricultural Science, Tohoku University, Sendai 981-8555, Japan ABSTRACT: A new species of spionid polychaete, Polydora onagawaensis, is described from mol- lusk shells in Pacific waters of northeastern Japan. Its nuclear 18S rRNA gene sequence as well as its morphology, reproductive features, life history and infestation characteristics are reported. Polydora onagawaensis sp. nov. belongs to the Polydora ciliata/websteri group and has a moder- ate size and variable black pigmentation on the palps and body. Up to 115 worms were found bor- ing in a single scallop shell from suspended cultures in Onagawa Bay, with significantly higher numbers in the right than in the left valve. Females repeatedly deposited a string of egg capsules from around October to June (seawater temperature was below 15°C). The larvae developed inside the egg capsules for 2 wk (10°C, laboratory conditions), until the 3-chaetiger stage, before being released as planktonic larvae. The main spawning occurred in December, recruitment onto the shells increased after January, and most large worms disappeared between July and October. Thus, the estimated life span is around 1.5 yr after settlement. Details on biology and gene infor- mation not only contribute to distinguishing the species from other polydorids similar in morpho- logy, but also allow control of polydorid infestation in mollusk aquaculture. -
OREGON ESTUARINE INVERTEBRATES an Illustrated Guide to the Common and Important Invertebrate Animals
OREGON ESTUARINE INVERTEBRATES An Illustrated Guide to the Common and Important Invertebrate Animals By Paul Rudy, Jr. Lynn Hay Rudy Oregon Institute of Marine Biology University of Oregon Charleston, Oregon 97420 Contract No. 79-111 Project Officer Jay F. Watson U.S. Fish and Wildlife Service 500 N.E. Multnomah Street Portland, Oregon 97232 Performed for National Coastal Ecosystems Team Office of Biological Services Fish and Wildlife Service U.S. Department of Interior Washington, D.C. 20240 Table of Contents Introduction CNIDARIA Hydrozoa Aequorea aequorea ................................................................ 6 Obelia longissima .................................................................. 8 Polyorchis penicillatus 10 Tubularia crocea ................................................................. 12 Anthozoa Anthopleura artemisia ................................. 14 Anthopleura elegantissima .................................................. 16 Haliplanella luciae .................................................................. 18 Nematostella vectensis ......................................................... 20 Metridium senile .................................................................... 22 NEMERTEA Amphiporus imparispinosus ................................................ 24 Carinoma mutabilis ................................................................ 26 Cerebratulus californiensis .................................................. 28 Lineus ruber ......................................................................... -
Swimming Behavior and Prey Retention of the Polychaete Larvae Polydora Ciliata (Johnston)
3237 The Journal of Experimental Biology 213, 3237-3246 © 2010. Published by The Company of Biologists Ltd doi:10.1242/jeb.038810 Swimming behavior and prey retention of the polychaete larvae Polydora ciliata (Johnston) B. W. Hansen1, H. H. Jakobsen2,*, A. Andersen3, R. Almeda4, T. M. Pedersen1, A. M. Christensen1 and B. Nilsson1 1Roskilde University, Department of Environmental, Social and Spatial Change, P O Box 260, DK-4000 Roskilde, Denmark, 2National Institute of Aquatic Resources, Charlottenlund Slot, Jægersborg Allé 1, DK-2920 Charlottenlund, Denmark, 3Department of Physics and Center for Fluid Dynamics, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark and 4Institut de Ciències del Mar, CSIC P. Marítim de la Barceloneta 37-49, 08003 Barcelona, Spain *Author for correspondence at present address: National Environmental Research Institute, Aarhus University, Frederiksborgvej 399, P.O. Box 358, DK-4000 Roskilde, Denmark ([email protected]) SUMMARY The behavior of the ubiquitous estuarine planktotrophic spionid polychaete larvae Polydora ciliata was studied. We describe ontogenetic changes in morphology, swimming speed and feeding rates and have developed a simple swimming model using low Reynolds number hydrodynamics. In the model we assumed that the ciliary swimming apparatus is primarily composed of the prototroch and secondarily by the telotroch. The model predicted swimming speeds and feeding rates that corresponded well with the measured speeds and rates. Applying empirical data to the model, we were able to explain the profound decrease in specific feeding rates and the observed increase in the difference between upward and downward swimming speeds with larval size. We estimated a critical larval length above which the buoyancy-corrected weight of the larva exceeds the propulsion force generated by the ciliary swimming apparatus and thus forces the larva to the bottom. -
(Polychaeta) Borings in Paraspirifer Bownockeri (Brachiopoda: Devonian)1
114 A. E. ANNALA AND L. A. KAPUSTKA Vol. 83 Copyright © 1983 Ohio Acad. Sci. 003O-O95O/83/0003-O114 $2.00/0 VERMIFORICHNUS (POLYCHAETA) BORINGS IN PARASPIRIFER BOWNOCKERI (BRACHIOPODA: DEVONIAN)1 R. D. HOARE and R. L. WALDEN, Department of Geology, Bowling Green State University, Bowling Green, OH 43403 ABSTRACT. Shells of Paraspirifer bownockeri (Stewart) from the Silica Formation, Middle Devonian of northwestern Ohio, commonly contain numerous borings of a polychaete worm forming the endolithic trace fossil Vermiforichnus clarki Cameron (1969a) which can be exposed by acidizing the specimens. The borings are most abundant on the brachial valve, and their surface openings tend to be concentrated along major growth lines thence extending dominantly in the general direction of the beaks of the valves. In- festations of the polychaete occurred at 2 different time intervals as indicated by the spac- ing of the borings on 2 major growth lines with renewed shell growth between them. Growth of the host was severely reduced immediately following the infestation and in some areas damage to the mantle caused deformation in the shell of the host. OHIO J. SCI. 83 (3): 114-119, 1983 INTRODUCTION (1932) by Hoare and Steller (1967) (fig. 1), Previous interpretations of the larger as boring sponges by Kesling and Chilman borings commonly seen in the brachiopod (1975) and as "Clionoides" sp. by Steller Paraspirifer bownockeri (Stewart) from the (1965), Kesling et al. (1980) and Sparks Silica Formation in northwestern Ohio et al. (1980). These interpretations were have been alluded to as sponge borings, based on the external configuration of the Clionoides thomasi Fenton and Fenton surface opening of the boring only.