I1a IEA Team Report 2
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University of Oklahoma
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D. -
Choose Your Fish Brochure
outside: panel 1 (MDH North Shore) outside: panel 2 (MDH North Shore) outside: panel 3 (MDH North Shore) outside: panel 4 (MDH North Shore–back cover) outside: panel 5 (MDH North Shore–front cover) 4444444444444444444444444444444444444444444444444444444444444444444444444 4444444444444444444444444444444444444444444444444444444444444444444444444 Parmesan Salmon 4444444444444444444444444444444 Fish to Avoid Bought or Try this easy, tasty recipe for serving up a good source of omega-3s. Salmon has a rich, buttery taste and Mercury levels are too high Caught Think: species, tender, large flakes. Serve with brown rice and a mixed Do not eat the following fish if you are pregnant or green salad for up to 4 people. CHOOSE may become pregnant, or are under 15 years old: size and source YOUR What you need 1 pound salmon fillet (not steak) • Lake Superior Lake Trout How much mercury is in 2 tablespoons grated Parmesan cheese (longer than 39 inches) fish depends on the: • Lake Superior Siscowet Lake Trout 1 tablespoon horseradish, drained (longer than 29 inches) 1/3 cup plain nonfat yogurt • Species. Some fish have 1 tablespoon Dijon mustard • Muskellunge (Muskie) more mercury than others 1 tablespoon lemon juice • Shark because of what they eat and How to prepare • Swordfish how long they live. 1. Arrange the fillet, skin side down, on foil-covered broiler pan. Raw and smoked fish may cause illness • Size. Smaller fish generally have less FISHFISHFISH 2. Combine remaining ingredients and spread over fillet. If you are or might be pregnant: mercury than larger, older fish of the 3. Bake at 450°F or broil on high for 10 to 15 minutes, same species. -
Planktonic Algal Blooms from 2000 to 2015 in Acapulco
125: 61-93 October 2018 Research article Planktonic algal blooms from 2000 to 2015 in Acapulco Bay, Guerrero, Mexico Florecimientos de microalgas planctónicas de 2000 al 2015 en la Bahía de Acapulco, Guerrero, México María Esther Meave del Castillo1,2 , María Eugenia Zamudio-Resendiz1 ABSTRACT: 1 Universidad Autónoma Metro- Background and Aims: Harmful algal blooms (HABs) affect the marine ecosystem in multiple ways. The politana, Unidad Iztapalapa, De- objective was to document the species that produced blooms in Acapulco Bay over a 15-year period (2000- partamento de Hidrobiología, La- boratorio de Fitoplancton Marino 2015) and analyze the presence of these events with El Niño-Southern Oscillation (ENSO). y Salobre, Av. San Rafael Atlixco Methods: Thirty-five collections, made during the years 2000, 2002-2004, 2006-2011, 2013-2015, were 186, Col. Vicentina, Iztapalapa, undertaken with phytoplankton nets and Van Dorn bottle, yielding 526 samples, of which 423 were quanti- 09340 Cd. Mx., México. fied using the Utermöhl method. The relationship of HAB with ENSO was made with standardized values 2 Author for correspondence: of Multivariate ENSO Index (MEI) and the significance was evaluated with the method quadrant sums of [email protected] Olmstead-Tukey. Key results: Using data of cell density and high relative abundance (>60%), 53 blooms were recorded, most Received: November 21, 2017. of them occurring during the rainy season (June-October) and dry-cold season (November-March), plus 37 Reviewed: January 10, 2018. blooms reported by other authors. These 90 blooms were composed of 40 taxa: 21 diatoms and 19 dinoflagel- Accepted: April 6, 2018. -
Peridinin-Containing Dinoflagellates Are Eukaryotic Protozoans, Which
Investigation of Dinoflagellate Plastid Protein Transport using Heterologous and Homologous in vivo Systems Dissertation zur Erlangung des Doktorgrades der Naturwissenschaften (Dr. rer. nat.) Vorgelegt dem Fachbereich Biologie der Philipps-Universität Marburg von Andrew Scott Bozarth aus Columbia, Maryland, USA Marburg/Lahn 2010 Vom Fachbereich Biologie der Philipps-Universität als Dissertation angenommen am 26.07.2010 angenommen. Erstgutachter: Prof. Dr. Uwe-G. Maier Zweitgutachter: Prof. Dr. Klaus Lingelbach Prof. Dr. Andreas Brune Prof. Dr. Renate Renkawitz-Pohl Tag der Disputation am: 11.10.2010 Results! Why, man, I have gotten a lot of results. I know several thousand things that won’t work! -Thomas A. Edison Publications Bozarth A, Susanne Lieske, Christine Weber, Sven Gould, and Stefan Zauner (2010) Transfection with Dinoflagellate Transit Peptides (in progress). Bolte K, Bullmann L, Hempel F, Bozarth A, Zauner S, Maier UG (2009) Protein Targeting into Secondary Plastids. J. Eukaryot. Microbiol. 56, 9–15. Bozarth A, Maier UG, Zauner S (2009) Diatoms in biotechnology: modern tools and applications. Appl. Microbiol. Biotechnol. 82, 195-201. Maier UG, Bozarth A, Funk HT, Zauner S, Rensing SA, Schmitz-Linneweber C, Börner T, Tillich M (2008) Complex chloroplast RNA metabolism: just debugging the genetic programme? BMC Biol. 6, 36. Hempel F, Bozarth A, Sommer MS, Zauner S, Przyborski JM, Maier UG. (2007) Transport of nuclear-encoded proteins into secondarily evolved plastids. Biol Chem. 388, 899-906. Table of Contents TABLE OF CONTENTS -
Chinook Salmon Oncorhynchus Tsha Wytscha from Experimentally-Induced Proliferative Kidney Disease
DISEASES OF AQUATIC ORGANISMS Vol. 4: 165-168, 1988 Published July 27 Dis. aquat. Org. I Oral administration of Fumagillin DCH protects chinook salmon Oncorhynchus tsha wytscha from experimentally-induced proliferative kidney disease R. P. Hedrick*,J. M. Groff, P. Foley, T. McDowell Aquaculture and Fisheries Program, Department of Medicine, School of Veterinary Medicine, University of California, Davis, California 95616, USA ABSTRACT: The antibiotic Fumagillin DCH was found to be effective in controlling experimental infections with PKX, the myxosporean that causes proliferative kidney disease (PKD) in salmonid fish. Following 6 or 7 wk of treatment, experimentally infected chinook salmon Oncorhynchus tshawytscha showed no evidence of PKX cells, or of the renal inflammation characteristic of PKD, on withdrawal of the treatment and tor up to 7 wk afterwards. In contrast, 90 to 100 % of fish (in 2 experiments) that were injected with PKX, but not glven the antibiotic, had numerous PKX cells in the kidney and developed clinical PKD. This is the first report of an effective orally administered drug for the control of a myxozoan infection in salmonid fish. INTRODUCTION Clifton-Hadley & Alderman (1987) found that periodic bath treatments with malachite green effectively Proliferative kidney disease (PKD) is considered to reduced the severity and prevalence of PKD in rainbow be one of the most serious diseases of farm-reared trout trout. In the study, malachite green was found to be in Europe and also causes major losses among Pacific concentrated in certain tissues of the rainbow trout and salmon in North America (Clifton-Hadley et al. 1984, this in combination with the teratogenic and car- Hedrick et al. -
Federal Register/Vol. 85, No. 123/Thursday, June 25, 2020/Rules
Federal Register / Vol. 85, No. 123 / Thursday, June 25, 2020 / Rules and Regulations 38093 that make the area biologically unique. and contrary to the public interest to DEPARTMENT OF COMMERCE It provides important juvenile swordfish provide prior notice of, and an habitat, and is essentially a narrow opportunity for public comment on, this National Oceanic and Atmospheric migratory corridor containing high action for the following reasons: Administration concentrations of swordfish located in Based on recent data for the first semi- close proximity to high concentrations 50 CFR Part 679 annual quota period, NMFS has of people who may fish for them. Public [Docket No. 200604–0152] comment on Amendment 8, including determined that landings have been from the Florida Fish and Wildlife very low through April 30, 2020 (21.9 RIN 0648–BJ35 Conservation Commission, indicated percent of 1,318.8 mt dw quota). concern about the resultant high Adjustment of the retention limits needs Fisheries of the Exclusive Economic potential for the improper rapid growth to be effective on July 1, 2020; otherwise Zone Off Alaska; Modifying Seasonal of a commercial fishery, increased lower, default retention limits will Allocations of Pollock and Pacific Cod catches of undersized swordfish, the apply. Delaying this action for prior for Trawl Catcher Vessels in the potential for larger numbers of notice and public comment would Central and Western Gulf of Alaska fishermen in the area, and the potential unnecessarily limit opportunities to AGENCY: National Marine Fisheries for crowding of fishermen, which could harvest available directed swordfish Service (NMFS), National Oceanic and lead to gear and user conflicts. -
Marea Roja Producida Por Lingulodinium Polyedrum (Peridiniales, Dinophyceae) En Bahía Culebra, Golfo De Papagayo, Costa Rica
Rev. Biol. Trop. 49. Supl. 2: 19-23, 2001 www.rbt.ac.cr, www.ucr.ac.cr COMUNICACIÓN BREVE Marea roja producida por Lingulodinium polyedrum (Peridiniales, Dinophyceae) en Bahía Culebra, Golfo de Papagayo, Costa Rica 1 2 3 4 Alvaro Morales-Ramírez , Roxana Víquez , Karina Rodríguez y Maribel Vargas 1Centro de Investigación en Ciencias del Mar y Limnogía CIMAR y Escuela de Biología, Universidad de Costa Rica, 2060 San José, Costa Rica. Correo electrónico: [email protected]; 2 Escuela de Ciencias Biológicas, Universidad Nacional, Heredia; 3Programa Regional de Posgrado en Biología, Universidad de Costa Rica; 4 Unidad de Microscopia Electrónica, Universidad de Costa Rica. (Recibido 02-VII-2001.Revisado 27-X-2001. Aceptado 02-XI-2001) Abstract: This is the first record of the dinoflagellate Lingulodinium polyedrum in a red tide bloom in the North Pacific coast of Costa Rica. The sample was collected on April 2000 at Culebra Bay, Gulf of Papagayo, from a patch of aproximatly 2000 m2, which produced a red discoloration of the water and a peculiar strong odor. This species produces spherical hypnocysts that may remain for decades when dark or anoxic conditions are present; L. polyedrum had been associated with the production of paralyzing toxins such as saxitoxins and yessotoxins. A second smaller patch was observed close Panama beach, into the bay, where we found seven puffer fish (Diodontidae) and two lobsters dead in the sand. It is important to develop a monitoring program to identify seasonal behavior of this species and ameliorate its impact on coastal human communities. Key words: Red tide, dinoflagellates, Lingulodinium polyedrum, Culebra Bay, Pacific coast, Costa Rica. -
Stillaguamish Watershed Chinook Salmon Recovery Plan
Stillaguamish Watershed Chinook Salmon Recovery Plan Prepared by: Stillaguamish Implementation Review Committee (SIRC) June 2005 Recommended Citation: Stillaguamish Implementation Review Committee (SIRC). 2005. Stillaguamish Watershed Chinook Salmon Recovery Plan. Published by Snohomish County Department of Public Works, Surface Water Management Division. Everett, WA. Front Cover Photos (foreground to background): 1. Fish passage project site visit by SIRC (Sean Edwards, Snohomish County SWM) 2. Riparian planting volunteers (Ann Boyce, Stilly-Snohomish Fisheries Enhancement Task Force) 3. Boulder Creek (Ted Parker, Snohomish County SWM) 4. Stillaguamish River Estuary (Washington State Department of Ecology) 5. Background – Higgins Ridge from Hazel Hole on North Fork Stillaguamish River (Snohomish County SWM) Stillaguamish Watershed Chinook Salmon Recovery Plan ii June 2005 Stillaguamish Watershed Chinook Salmon Recovery Plan Table of Contents 1. INTRODUCTION ................................................................................................... 1 Purpose .................................................................................................................................1 SIRC Mission and Objectives ..............................................................................................1 Relationship to Shared Strategy and Central Puget Sound ESU Efforts .............................2 Stillaguamish River Watershed Overview ...........................................................................3 Salmonid -
Effects of Salinity Variation on Growth and Yessotoxin Composition in the Marine Dinoflagellate Lingulodinium Polyedra from a Sk
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Electronic Publication Information Center Harmful Algae 78 (2018) 9–17 Contents lists available at ScienceDirect Harmful Algae journal homepage: www.elsevier.com/locate/hal Effects of salinity variation on growth and yessotoxin composition in the marine dinoflagellate Lingulodinium polyedra from a Skagerrak fjord system T (western Sweden) ⁎ Carolin Petera, , Bernd Krockb, Allan Cembellab a Universität Bremen, Bibliothekstraße 1, 28359 Bremen, Germany b Alfred-Wegener-Institut, Helmholtz Zentrum für Polar- und Meeresforschung, Am Handelshafen 12, 27570 Bremerhaven, Germany ARTICLE INFO ABSTRACT Keywords: The marine dinoflagellate Lingulodinium polyedra is a toxigenic species capable of forming high magnitude and Toxin quota occasionally harmful algal blooms (HABs), particularly in temperate coastal waters throughout the world. Three Toxin profile cultured isolates of L. polyedra from a fjord system on the Skagerrak coast of Sweden were analyzed for their – LC MS/MS growth characteristics and to determine the effects of a strong salinity gradient on toxin cell quotas and com- Protoceratium reticulatum position. The cell quota of yessotoxin (YTX) analogs, as determined by liquid chromatography coupled with YTX analogs tandem mass spectrometry (LC–MS/MS), ranged widely among strains. For two strains, the total toxin content Homo-YTX remained constant over time in culture, but for the third strain, the YTX cell quota significantly decreased (by 32%) during stationary growth phase. The toxin profiles of the three strains differed markedly and none pro- duced YTX. The analog 41a-homo-YTX (m/z 1155), its putative methylated derivative 9-Me-41a-homo-YTX (m/z 1169) and an unspecified keto-YTX (m/z 1047) were detected in strain LP29-10H, whereas strain LP30-7B contained nor-YTX (m/z 1101), and two unspecified YTX analogs at m/z 1159 and m/z 1061. -
Review of Potential Impacts of Atlantic Salmon Culture on Puget Sound Chinook Salmon and Hood Canal Summer-Run Chum Salmon Evolutionarily Significant Units
NOAA Technical Memorandum NMFS-NWFSC-53 Review of Potential Impacts of Atlantic Salmon Culture on Puget Sound Chinook Salmon and Hood Canal Summer-Run Chum Salmon Evolutionarily Significant Units June 2002 U.S. DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration National Marine Fisheries Service NOAA Technical Memorandum NMFS Series The Northwest Fisheries Science Center of the Na tional Marine Fisheries Service, NOAA, uses the NOAA Technical Memorandum NMFS series to issue informal scientific and technical publications when complete formal review and editorial processing are not appropriate or feasible due to time constraints. Documents published in this series may be referenced in the scientific and technical literature. The NMFS-NWFSC Technical Memorandum series of the Northwest Fisheries Science Center continues the NMFS-F/NWC series established in 1970 by the Northwest & Alaska Fisheries Science Center, which has since been split into the Northwest Fisheries Science Center and the Alaska Fisheries Science Center. The NMFS-AFSC Technical Memorandum series is now being used by the Alaska Fisheries Science Center. Reference throughout this document to trade names does not imply endorsement by the National Marine Fisheries Service, NOAA. This document should be cited as follows: Waknitz, F.W., T.J. Tynan, C.E. Nash, R.N. Iwamoto, and L.G. Rutter. 2002. Review of potential impacts of Atlantic salmon culture on Puget Sound chinook salmon and Hood Canal summer-run chum salmon evolutionarily significant units. U.S. Dept. Commer., NOAA Tech. Memo. NMFS-NWFSC-53, 83 p. NOAA Technical Memorandum NMFS-NWFSC-53 Review of Potential Impacts of Atlantic Salmon Culture on Puget Sound Chinook Salmon and Hood Canal Summer-Run Chum Salmon Evolutionarily Significant Units F. -
Pacific Salmon: King of California Fish
Pacific Salmon: King of California Fish A Challenge to Restore Our Salmon Resources of the Future or hundreds of years, Pacific salmon F have been a part of California’s natural landscape. Magnificent, resilient and ever- determined, they face incredible odds to travel from their inland birthplace to the open ocean, where they mature for several years before making the perilous journey back home to spawn at the end of their lives. These amazing fish serve as an icon of the state’s wild and free rivers, reflecting the spirit and tenacity of California’s earliest inhabitants. But over the past 100 years, the numbers of salmon have been dropping. In 2008 and 2009, the population of California’s Central Valley Chinook salmon was so low that the state had to close salmon fisheries for the first time in history. Businesses failed, traditions were lost and anglers were mystified. In an attempt to decipher the reasons for this decline—as well as to collaborate on ways to reverse the trend—many state and federal agencies, universities, consulting groups and non-governmental organizations banded together. The California Department of Fish and Game (DFG) plays a lead role in these efforts to restore salmon populations. The cost and the effort required to initiate change are enormous, calling for a pooling of effort, intellect and financial resources. Only cooperative and innovative fisheries management coupled with habitat restoration and public education about our natural resources can reverse the downward trend in California’s salmon populations. Classifications of Salmon The term Pacific salmon comprises several species, but two types in particular are declining in number in California: Chinook (also known as king salmon) and coho. -
National Strategy for the Survival of Released Line-Caught Fish: a Review of Research and Fishery Information
NATIONAL STRATEGY FOR THE SURVIVAL OF RELEASED LINE-CAUGHT FISH: A REVIEW OF RESEARCH AND FISHERY INFORMATION FRDC Project 2001/101 McLeay, L.J, Jones, G.K. and Ward, T.M. November 2002 South Australian Research and Development Institute (SARDI) PO Box 120, Henley Beach, South Australia 5022 ISBN 0730852830 NATIONAL STRATEGY FOR THE SURVIVAL OF RELEASED LINE-CAUGHT FISH: A REVIEW OF RESEARCH AND FISHERY INFORMATION McLeay, L.J, Jones, G.K. and Ward, T.M. November 2002 Published by South Australian Research and Development Institute (Aquatic Sciences) © Fisheries Research and Development Corporation and SARDI. This work is copyright. Except as permitted under the Copyright Act 1968 (Cth), no part of this publication may be reproduced by any process, electronic or otherwise, without specific written permission of the copyright owners. Neither may information be stored electronically in any form whatsoever without such permission. DISCLAIMER The authors do not warrant that the information in this report is free from errors or omissions. The authors do not accept any form of liability, be it contractual, tortious or otherwise, for the contents of this report or for any consequences arising from its use or any reliance placed upon it. The information, opinions and advice contained in this report may not relate to, or be relevant to, a reader’s particular circumstances. Opinions expressed by the authors are the individual opinions of those persons and are not necessarily those of the publisher or research provider. ISBN No. 0730852830 TABLE