Cellular Asymmetry in Chlamydomonas Reinhardtii
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Conceptual Barriers to Progress Within Evolutionary Biology
Found Sci (2009) 14:195–216 DOI 10.1007/s10699-008-9153-8 Conceptual Barriers to Progress Within Evolutionary Biology Kevin N. Laland · John Odling-Smee · Marcus W. Feldman · Jeremy Kendal Published online: 26 November 2008 © Springer Science+Business Media B.V. 2008 Abstract In spite of its success, Neo-Darwinism is faced with major conceptual barriers to further progress, deriving directly from its metaphysical foundations. Most importantly, neo- Darwinism fails to recognize a fundamental cause of evolutionary change, “niche construc- tion”. This failure restricts the generality of evolutionary theory, and introduces inaccuracies. It also hinders the integration of evolutionary biology with neighbouring disciplines, includ- ing ecosystem ecology, developmental biology, and the human sciences. Ecology is forced to become a divided discipline, developmental biology is stubbornly difficult to reconcile with evolutionary theory, and the majority of biologists and social scientists are still unhappy with evolutionary accounts of human behaviour. The incorporation of niche construction as both a cause and a product of evolution removes these disciplinary boundaries while greatly generalizing the explanatory power of evolutionary theory. Keywords Niche construction · Evolutionary biology · Ecological inheritance · Ecosystem ecology · Developmental biology 1 Introduction On the face of it, evolutionary biology is a thriving discipline: It is built on the solid theoret- ical foundations of mathematical population biology; it has a rich and productive empirical K. N. Laland (B) School of Biology, University of St. Andrews, Bute Building, Queens Terrace, St. Andrews, Fife KY16 9TS, UK e-mail: [email protected] J. Odling-Smee Mansfield College, University of Oxford, Oxford OX1 3TF, UK M. -
Wingless Is a Positive Regulator of Eyespot Color Patterns in Bicyclus Anynana Butterflies
bioRxiv preprint doi: https://doi.org/10.1101/154500; this version posted June 23, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. wingless is a positive regulator of eyespot color patterns in Bicyclus anynana butterflies 1,* 1 2 1 1,3,* Nesibe Özsu , Qian Yi Chan , Bin Chen , Mainak Das Gupta , and Antónia Monteiro 1 Biological Sciences, National University of Singapore, Singapore 117543; 2 Institute of Entomology and Molecular Biology, Chongqing Normal University, Shapingba, 400047 Chongqing, China 3 Yale-NUS College, Singapore 138614 * Corresponding authors: Nesibe Özsu5or Antónia Monteiro Department of Biological Sciences, 14 Science Drive 4 Singapore, 117543 Tel: +65 97551591 [email protected] or [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/154500; this version posted June 23, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Summary 2 Eyespot patterns of nymphalid butterflies are an example of a novel trait yet, the 3 developmental origin of eyespots is still not well understood. Several genes have been 4 associated with eyespot development but few have been tested for function. One of these 5 genes is the signaling ligand, wingless, which is expressed in the eyespot centers during early 6 pupation and may function in eyespot signaling and color ring differentiation. Here we 7 tested the function of wingless in wing and eyespot development by down-regulating it in 8 transgenic Bicyclus anynana butterflies via RNAi driven by an inducible heat-shock promoter. -
Development, Plasticity and Evolution of Butterfly Eyespot Patterns" (1996), by Paul M
Published on The Embryo Project Encyclopedia (https://embryo.asu.edu) "Development, Plasticity and Evolution of Butterfly Eyespot Patterns" (1996), by Paul M. Brakefield et al. [1] By: Zou, Yawen Keywords: Butterfly eyespots [2] Paul M. Brakefield experiment [3] Bush-brown butterfly [4] eyespot patterns [5] Paul M. Brakefield and his research team in Leiden, the Netherlands, examined the development, plasticity, ande volution [6] of butterfly [7] eyespot patterns, and published their findings in Nature in 1996. Eyespots are eye-shaped color patterns that appear on the wings of some butterflies and birds [8] as well as on the skin of some fish [9] and reptiles. In butterflies, such as the peacock butterfly [7] (Aglais io [10]), the eyespots resemble the eyes of birds [8] and help butterflies deter potential predators. Brakefield's research team described the stages through which eyespots develop, identified the genes [11] and environmental signals that affect eye-spot appearance in some species, and demonstrated that small genetic variations can change butterfly [7] eyespot color and shape. The research focused on a few butterfly [7] species, but it contributed to more general claims of how the environment may affect the development of coloration and how specific color patterns may have evolved. At the time of experiment, Brakefield was a Chair in Evolutionary Biology at the University of Leiden [12], in Leiden, the Netherlands, though in 2010 he moved to Cambridge, UK to direct the University Museum of Zoology. While in Leiden, he persued a research program in evolutionary developmental biology [13] and had started working on butterfly [7] eyespots in collaboration with Vernon French, who was at the University of Edinburgh [14] in Edinburgh, Scotland. -
Temporal Flexibility of Gene Regulatory Network Underlies a Novel Wing Pattern in Flies
Temporal flexibility of gene regulatory network underlies a novel wing pattern in flies Héloïse D. Dufoura,b, Shigeyuki Koshikawa (越川滋行)a,b,1,2,3, and Cédric Fineta,b,3,4 aHoward Hughes Medical Institute, University of Wisconsin, Madison, WI 53706; and bLaboratory of Molecular Biology, University of Wisconsin, Madison, WI 53706 Edited by Denis Duboule, University of Geneva, Geneva 4, Switzerland, and approved April 6, 2020 (received for review February 3, 2020) Organisms have evolved endless morphological, physiological, and Nevertheless, it does not explain how the new expression of behavioral novel traits during the course of evolution. Novel traits the coopted toolkit genes does not interfere with the develop- were proposed to evolve mainly by orchestration of preexisting ment of the tissue. Some authors have suggested that the reuse genes. Over the past two decades, biologists have shown that of toolkit genes might only happen during late development after cooption of gene regulatory networks (GRNs) indeed underlies completion of the early function of the redeployed genes (21, 22, numerous evolutionary novelties. However, very little is known 29). However, little is known about the properties of a GRN that about the actual GRN properties that allow such redeployment. allow the cooption of one or several of its components/genes Here we have investigated the generation and evolution of the without impairing the development of the tissue. complex wing pattern of the fly Samoaia leonensis. We show that In this study, we use the complex wing pigmentation pattern of the transcription factor Engrailed is recruited independently from the fly species Samoaia leonensis as a model to address how the the other players of the anterior–posterior specification network to generate a new wing pattern. -
Wonderful Wacky Water Critters
Wonderful, Wacky, Water Critters WONDERFUL WACKY WATER CRITTERS HOW TO USE THIS BOOK 1. The “KEY TO MACROINVERTEBRATE LIFE IN THE RIVER” or “KEY TO LIFE IN THE POND” identification sheets will help you ‘unlock’ the name of your animal. 2. Look up the animal’s name in the index in the back of this book and turn to the appropriate page. 3. Try to find out: a. What your animal eats. b. What tools it has to get food. c. How it is adapted to the water current or how it gets oxygen. d. How it protects itself. 4. Draw your animal’s adaptations in the circles on your adaptation worksheet on the following page. GWQ023 Wonderful Wacky Water Critters DNR: WT-513-98 This publication is available from county UW-Extension offices or from Extension Publications, 45 N. Charter St., Madison, WI 53715. (608) 262-3346, or toll-free 877-947-7827 Lead author: Suzanne Wade, University of Wisconsin–Extension Contributing scientists: Phil Emmling, Stan Nichols, Kris Stepenuck (University of Wisconsin–Extension) and Mike Miller, Mike Sorge (Wisconsin Department of Natural Resources) Adapted with permission from a booklet originally published by Riveredge Nature Center, Newburg, WI, Phone 414/675-6888 Printed on Recycled Paper Illustrations by Carolyn Pochert and Lynne Bergschultz Page 1 CRITTER ADAPTATION CHART How does it get its food? How does it get away What is its food? from enemies? Draw your “critter” here NAME OF “CRITTER” How does it get oxygen? Other unique adaptations. Page 2 TWO COMMON LIFE CYCLES: WHICH METHOD OF GROWING UP DOES YOUR ANIMAL HAVE? egg larva adult larva - older (mayfly) WITHOUT A PUPAL STAGE? THESE ANIMALS GROW GRADUALLY, CHANGING ONLY SLIGHTLY AS THEY GROW UP. -
Duke University Dissertation Template
Evolutionary trends in phenotypic elements of seasonal forms of the tribe Junoniini (Lepidoptera: Nymphalidae) by Jameson Wells Clarke Department of Biology Duke University Date:_______________________ Approved: ___________________________ H. Fred Nijhout, Ph.D., Supervisor ___________________________ V. Louise Roth, Ph.D. ___________________________ Sonke Johnsen, Ph.D. Thesis submitted in partial fulfillment of the requirements for the degree of Master of Science in the Department of Biology in the Graduate School of Duke University 2017 i v ABSTRACT Evolutionary trends in phenotypic elements of seasonal forms of the tribe Junoniini (Lepidoptera: Nymphalidae) by Jameson Wells Clarke Department of Biology Duke University Date:_______________________ Approved: ___________________________ H. Fred Nijhout, Ph.D., Supervisor ___________________________ V. Louise Roth, Ph.D. ___________________________ Sonke Johnsen, Ph.D. An abstract of a thesis submitted in partial fulfillment of the requirements for the degree of Master of Science in the Department of Biology in the Graduate School of Duke University 2017 Copyright by Jameson Wells Clarke 2017 Abstract Seasonal polyphenism in insects is the phenomenon whereby multiple phenotypes can arise from a single genotype depending on environmental conditions during development. Many butterflies have multiple generations per year, and environmentally induced variation in wing color pattern phenotype allows them to develop adaptations to the specific season in which the adults live. Elements of butterfly -
Origin of the Mechanism of Phenotypic Plasticity in Satyrid Butterfly Eyespots
SHORT REPORT Origin of the mechanism of phenotypic plasticity in satyrid butterfly eyespots Shivam Bhardwaj1†*, Lim Si-Hui Jolander2, Markus R Wenk1,2, Jeffrey C Oliver3, H Frederik Nijhout4, Antonia Monteiro1,5* 1Department of Biological Sciences, National University of Singapore, Singapore, Singapore; 2Department of Biochemistry, National University of Singapore, Singapore, Singapore; 3Office of Digital Innovation & Stewardship, University of Arizona, Tucson, United States; 4Department of Biology, Duke University, Durham, United States; 5Yale-NUS College, Singapore, Singapore Abstract Plasticity is often regarded as a derived adaptation to help organisms survive in variable but predictable environments, however, we currently lack a rigorous, mechanistic examination of how plasticity evolves in a large comparative framework. Here, we show that phenotypic plasticity in eyespot size in response to environmental temperature observed in Bicyclus anynana satyrid butterflies is a complex derived adaptation of this lineage. By reconstructing the evolution of known physiological and molecular components of eyespot size plasticity in a comparative framework, we showed that 20E titer plasticity in response to temperature is a pre-adaptation shared by all butterfly species examined, whereas expression of EcR in eyespot centers, and eyespot sensitivity to 20E, are both derived traits found only in a *For correspondence: subset of species with eyespots. [email protected] (SB); [email protected] (AM) Introduction Present address: †Department -
The Genetic Basis of Hindwing Eyespot Number Variation in Bicyclus
bioRxiv preprint doi: https://doi.org/10.1101/504506; this version posted December 21, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 The genetic basis of hindwing eyespot number variation in Bicyclus 2 anynana butterflies 3 4 Angel G. Rivera-Colón*, †, Erica L. Westerman‡, Steven M. Van Belleghem†, Antónia 5 Monteiro§,**, and Riccardo Papa† 6 7 Affiliations 8 *Department of Animal Biology, University of Illinois, Urbana-Champaign 9 †University of Puerto Rico-Rio Piedras Campus 10 ‡University of Arkansas, Fayetteville 11 §National University of Singapore 12 **Yale-NUS College 13 14 Data accessibility 15 The Bicyclus anynana PstI RAD-tag sequencing data is available via the Genbank 16 Bioproject PRJNA509697. Genotype VCF files will be made available through figshare 17 upon acceptance. 1 bioRxiv preprint doi: https://doi.org/10.1101/504506; this version posted December 21, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 18 Running Title: Genetics of eyespot number variation 19 20 Key words: Serial homology, genetics, apterous, eyespot number, Bicyclus anynana, 21 genetic architecture 22 23 Co-Corresponding Authors: 24 [email protected] and [email protected] 2 bioRxiv preprint doi: https://doi.org/10.1101/504506; this version posted December 21, 2018. -
Eyespot-Assembly Mutants in Chlamydomonas Reinhardtii
Copyright 1999 by the Genetics Society of America Eyespot-Assembly Mutants in Chlamydomonas reinhardtii Mary Rose Lamb,* Susan K. Dutcher,² Cathy K. Worley³ and Carol L. Dieckmann³ *Department of Biology, University of Puget Sound, Tacoma, Washington 98416-0320, ²Department of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, Colorado 80309 and ³Department of Biochemistry, University of Arizona, Tucson, Arizona 85721 Manuscript received April 28, 1999 Accepted for publication June 25, 1999 ABSTRACT Chlamydomonas reinhardtii is a single-celled green alga that phototaxes toward light by means of a light- sensitive organelle, the eyespot. The eyespot is composed of photoreceptor and Ca11-channel signal transduction components in the plasma membrane of the cell and re¯ective carotenoid pigment layers in an underlying region of the large chloroplast. To identify components important for the positioning and assembly of a functional eyespot, a large collection of nonphototactic mutants was screened for those with aberrant pigment spots. Four loci were identi®ed. eye2 and eye3 mutants have no pigmented eyespots. min1 mutants have smaller than wild-type eyespots. mlt1(ptx4) mutants have multiple eyespots. The MIN1, MLT1(PTX4), and EYE2 loci are closely linked to each other; EYE3 is unlinked to the other three loci. The eye2 and eye3 mutants are epistatic to min1 and mlt1 mutations; all double mutants are eyeless. min1 mlt1 double mutants have a synthetic phenotype; they are eyeless or have very small, misplaced eyespots. Ultrastructural studies revealed that the min1 mutants are defective in the physical connection between the plasma membrane and the chloroplast envelope membranes in the region of the pigment granules. -
Hedgehog Signaling Enables Nutrition-Responsive Inhibition of an Alternative Morph in a Polyphenic Beetle
Hedgehog signaling enables nutrition-responsive inhibition of an alternative morph in a polyphenic beetle Teiya Kijimotoa,b,1 and Armin P. Moczeka aDepartment of Biology, Indiana University, Bloomington, IN 47405; and bDivision of Plant and Soil Sciences, West Virginia University, Morgantown, WV 26506 Edited by David L. Denlinger, Ohio State University, Columbus, OH, and approved April 4, 2016 (received for review February 3, 2016) The recruitment of modular developmental genetic components development of two or more discrete morphs or castes—has be- into new developmental contexts has been proposed as a central come increasingly recognized for its importance as a potential mechanism enabling the origin of novel traits and trait functions facilitator of adaptive radiations (8). For instance, in many butterfly without necessitating the origin of novel pathways. Here, we in- species, seasonal conditions critically alter selective environments, vestigate the function of the hedgehog (Hh) signaling pathway, a and seasonal sensitivity in eye spot formation is able to adjust wing highly conserved pathway best understood for its role in patterning phenotypes, thereby maintaining high fitness across fluctuating anterior/posterior (A/P) polarity of diverse traits, in the develop- environments (9). Similarly, environment-dependent induction mental evolution of beetle horns, an evolutionary novelty, and horn of carnivory in spadefoot toad tadpoles (10, 11) or tooth for- polyphenisms, a highly derived form of environment-responsive mation and bacterial predation in nematodes (12), two striking trait induction. We show that interactions among pathway members and complex evolutionary novelties, greatly affect the adaptive are conserved during development of Onthophagus horned beetles significance of each innovation, thereby facilitating their adaptive and have retained the ability to regulate A/P polarity in traditional radiations (13). -
11 Endocrine Control of Insect Polyphenism
11 Endocrine Control of Insect Polyphenism K. Hartfelder Universidade de São Paulo, Ribeirão Preto, São Paulo, Brazil D.J. Emlen University of Montana, Missoula, MT, USA © 2012 Elsevier B.V. All Rights Reserved Summary the insulin-signaling pathway is now also emerging as a Polyphenism in insects is associated with some of the major player. We present an overview of current knowl- most striking and successful life histories. Insect poly- edge regarding wing length dimorphism in crickets, phenisms center around four major themes: wing the gradual phase shift from the solitary to gregarious length variation (including winglessness), differences syndrome in migrating locusts, the complex switch- in fertility or reproductive strategies, body and/or wing ing between wingless/winged forms and asexual/sexual coloration and exaggerated morphologies. Hormones, reproduction in aphids, wing and body color variants in especially juvenile hormone and ecdy steroids are butterflies, male horn dimorphism in beetles, and caste important factors underlying the generation of dis- polyphenism occurring in the hemimetabolous termites tinct morphologies and reproductive strategies, and and holometabolous hymenopterans. 11.1. Polyphenism and Polymorphism: Discontinuity in the Variation of Insects 464 11.2. Polyphenism in the Hemimetabola 465 11.2.1. Hemiptera/Homoptera Wing Polyphenism 465 11.2.2. Orthoptera 470 11.2.3. “Isoptera” (Termites) — Caste Polyphenism in the Hemimetabola 476 11.3. Polyphenism in the Holometabola 479 11.3.1. Lepidoptera 479 11.3.2. Coleoptera — Male Dimorphism for Weaponry 484 11.3.3. Hymenoptera — Caste Polyphenism and Division of Labor 487 11.4. Synthesis and Perspectives 501 11.1. Polyphenism and Polymorphism: Discontinuity in the Variation of Insects focus on relatively discrete or discontinuous variation in Historically, the terms polymorphism and polyphen- phenotype expression. -
Macroevolutionary Shifts of Wnta Function Potentiate Butterfly Wing-Pattern Diversity
Macroevolutionary shifts of WntA function potentiate butterfly wing-pattern diversity Anyi Mazo-Vargasa, Carolina Conchab,1, Luca Livraghic,1, Darli Massardod,1, Richard W. R. Wallbankb,e,1, Linlin Zhanga, Joseph D. Papadorf, Daniel Martinez-Najeraf, Chris D. Jigginsb,e, Marcus R. Kronforstd, Casper J. Breukerc, Robert D. Reeda, Nipam H. Patelf,g, W. Owen McMillanb, and Arnaud Martinh,2 aDepartment of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY 14853; bSmithsonian Tropical Research Institute, Gamboa, Panama; cDepartment of Biological and Medical Sciences, Oxford Brookes University, Oxford OX3 0BP, United Kingdom; dDepartment of Ecology and Evolution, University of Chicago, Chicago, IL 60637; eDepartment of Zoology, University of Cambridge, Cambridge CB2 3EJ, United Kingdom; fDepartment of Integrative Biology, University of California, Berkeley, CA 94720; gDepartment of Molecular Cell Biology, University of California, Berkeley, CA 94720; and hDepartment of Biological Sciences, The George Washington University, Washington, DC 20052 Edited by Sean B. Carroll, Howard Hughes Medical Institute and University of Wisconsin–Madison, Madison, WI, and approved August 7, 2017 (received for review May 16, 2017) Butterfly wing patterns provide a rich comparative framework to framework, patterns are organized into parallel subdivisions of study how morphological complexity develops and evolves. Here autonomous color pattern complexes known as “symmetry sys- we used CRISPR/Cas9 somatic mutagenesis to test a patterning tems,” which are arranged across the dorsal and ventral surfaces of role for WntA, a signaling ligand gene previously identified as a both the fore- and hindwing (14–19) (Fig. 1 A–C). This arrange- hotspot of shape-tuning alleles involved in wing mimicry.