Implication of Chromosome 11 in the Suppression of Neoplastic Expression in Human Cell Hybrids1

Total Page:16

File Type:pdf, Size:1020Kb

Implication of Chromosome 11 in the Suppression of Neoplastic Expression in Human Cell Hybrids1 [CANCER RESEARCH 46, 6174-6179. December 1986] Implication of Chromosome 11 in the Suppression of Neoplastic Expression in Human Cell Hybrids1 Eri S. Srivatsan, William F. Benedict, and Eric J. Stanbridge2 Department of Microbiology and Molecular Genetics, University of California, Irvine, California 92717 [E. S. S., E. J, SJ, and Division of Hematology-Oncology, Children 's Hospital of Los Angeles, Los Angeles, California 90027 [W. F. B.J ABSTRACT cies hybrids. Intraspecies hybrids, most notably human-human cell hybrids, are much more stable (9) and have been used to Cytogenetic analyses of intraspecies human HeLa x fibroblast hybrid identify the loss of certain specific chromosomes that correlate cell populations have provided tentative evidence for the correlation of with reexpression of tumorigenicity in malignant x normal loss of a single copy of chromosomes 11 and 14 with reexpression of tumorigenicity. In this study paired combinations of nontumorigenic and human cell hybrids (8). tumorigenic segregant HeLa x fibroblast hybrid cells from two inde In our previous studies (8), as well as those of others (2), pendent fusion events were examined for the presence or absence of detailed cytogenetic analyses of paired combinations of sup normal chromosomes 11 and 14. In human hybrid cell lines the parental pressed and tumorigenic segregant HeLa x human fibroblast origin of chromosomes can be distinguished on the basis of restriction cell populations indicated that chromsome 11 and possibly fragment length polymorphisms. Genes for c-Ha-ros, insulin, and apoli- other chromosomes, in particular chromosome 14, were impli poprotein A-l on chromosome 11 and a polymorphic locus AVVIDI on cated in the control of tumorigenic expression. Unfortunately, chromosome 14 were used as Southern hybridization probes. Analysis of it is not possible by conventional cytogenetics to determine the DNA from the parental fibroblast and HeLa cell lines and their nontu parental origin of the specific chromosomes that were missing morigenic and tumorigenic hybrids showed the loss of a fibroblast chro in the tumorigenic segregants. mosome 11 in four of the tumorigenic segregants and a HeLa chromosome The availability of chromosome-specific RFLP1 probes (10) 11 in a fifth hybrid cell line. This latter segregant has, interestingly, also lost a copy of chromosome 14 of fibroblast origin. There was no obvious has now made it possible to identify specific chromosomes from correlation of loss of a copy of normal chromosome 14 and reexpression different individuals and, thereby, the presence or absence of of tumorigenicity in any of the other hybrid cell populations. such chromosomes in somatic cell hybrids. We have used this Our conclusion from these observations is that gene(s) that map to approach to analyze a series of intraspecific HeLa x fibroblast normal chromosome 11 might be involved in control of tumorigenic human cell hybrids using RFLP probes specific for chromo expression in these human hybrid cells. somes 11 and 14. INTRODUCTION MATERIALS AND METHODS Somatic cell hybrids, generated by fusing together two or more different cells of the same or different species, have been Cell Lines and Plasmids. The parental cell lines and the tumorigenic and nontumorigenic hybrids derived from fibroblast and HeLa fusions extremely useful in the study of the genetic analysis of malig nancy (reviewed in Refs. 1-3). In these studies the general are presented in Table 1. All cell lines were tested for tumorigenic potential at the time of the RFLP analysis studies. CGL series of approach has been to fuse a cancer cell with a normal cell and hybrids and the ESH5 series of hybrids were all derived from a common determine whether or not the resulting hybrid is tumorigenic. ancestral clone of HeLa x fibroblast, but each of the tumorigenic hybrid Both intraspecies and interspecies cell hybrids have been used clones represents an independent segregational event. For those cell (4-7). The general conclusion from these somatic cell hybrid lines where a detailed cytogenetic analysis was performed (8), cell studies is that tumorigenicity is initially suppressed in malig populations which had been frozen down at the time of that analysis nant x normal cell hybrids, and tumorigenic segregants arise were reconstituted and used within a few population doublings for the after varying intervals of time. The appearance of tumorigenic studies reported here. Identical hybrid-specific chromosome markers segregants is usually correlated with loss of chromosomes from were found in metaphases from both ESH39E and ESH39L, confirm ing that this tumorigenic segregant was derived from the nontumori the hybrid cell population in question (5, 7, 8). genic hybrid parent (data not shown). Fibroblast cells were grown in The most reasonable explanation for suppression of tumori Dulbecco's modified Eagle's medium containing nonessential amino genicity in somatic cell hybrids is that gene(s) located on chro- acids and 10% fetal calf serum. HeLa cells and the hybrid cell lines mosome(s) of the normal parental cell are able to control were grown in minimal essential medium containing nonessential tumorigenic behavior of the malignant cell when introduced amino acids and 10% fetal calf serum. into that cell via cell fusion. Similarly, reexpression of tumori Four RFLP probes were used in this study (Table 2). Three of the genicity would presumably result from loss of those specific probes were complementary to DNA sequences found on chromosome normal chromosome(s) from the hybrid cell via chromosome 11: a 6.6-kilobase fragment containing the c-Ha-ras-1 gene, which is nondisjunction or some other segregating event. Identification the cellular homologue of v-Ha-roj (11); phins310, which contains the of these normal "tumor-suppressor" chromosomes, however, 0.88-kilobase human insulin gene ligated to pBR322 at the Pvull site has not been easy. In interspecies human-rodent cell hybrids, (12); and pSV2-gpt-A-l, which contains the 2.2-kilobase human apo- lipoprotein A-l gene ligated to PSV2-gpt at the Pstl site (13). The where parental chromosomes would be most easily identified, fourth probe, pAWlOl, is a plasmili containing a 16-kilobase DNA suppression of tumorigenicity is usually only transient (2), due, fragment ligated to pBR322 at the EcoRl site (14). A function for this in large part, to the chromosomal instability of these interspe- DNA fragment has not yet been ascertained. This probe is specific for chromosome 14. Received 3/5/86; revised 6/11/86, 8/25/86; accepted 9/3/86. A fourth chromosome 11-specific probe, pHBl, which contains the The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in 4.4-kilobase human /?-globin gene ligated to pBR322 at the Pstl site accordance with 18 U.S.C. Section 1734 solely to indicate this fact. 1Supported by NIH Grant CA-19401, and Grant 1475 from the Council for 3The abbreviations used are: RFLP, restriction fragment length polymor Tobacco Research. phism; SET buffer, 150 mM Tris-HCl (pH 8.0):5 HIMEDTA:750 mM NaCl; SDS, 1To whom requests for reprints should be addressed. sodium dodecyl sulfate. 6174 Downloaded from cancerres.aacrjournals.org on September 23, 2021. © 1986 American Association for Cancer Research. CHROMOSOME 11 AND CONTROL OF TUMORIGENICITY (15), was used in an initial screen, but informative RFLP data were not (Fig. \A). We interpret from these data that HeLa is ho- forthcoming (data not shown), and this probe was not studied further. moyzgous and the two fibroblast parents heterozygous for the Plasm ids were grown in Escherichia coli strain HB101 (recA), am c-Ha-ras alíeleunder these particular restriction endonuclease plified by chloramphenicol and purified by ethidium bromide-CsCl digestion conditions. Thus, the discriminating RFLP fragments density gradent centrifugation (16). Cellular DNAs were prepared here are the GM-77-specific, 4.0- and 2.5-kilobase bands and according to Jolly et al. (17). Nick translation of the probe DNA was IMR-90-specific, 2.5-kilobase band relative to HeLa. The HeLa performed according to Feinberg and Vogelstein ( 18). 3.0-kilobase fragment is unique in crosses with fibroblast GM- Blot Hybridization Analysis. Genomic DNA from each parental cell 77, but is shared with fibroblast IMR-90. The 2.3-kilobase line and the hybrid cell lines was digested with the restriction enzymes Tail, Pvull, Pstl, or EcoRl according to the RFLP being analyzed fragment is common to all three parental cell lines. Other minor (Table 2). Each DNA sample was digested in a buffer containing 33 common bands are present but uninformative. The insulin mM Tris-HCl (pH 7.8), 60 mM potassium acetate, 10 mM MgCl, and probe, another chromosome 11 RFLP probe used in this anal 1 mM dithiothreitol at 37°Covernight for all the enzymes except Taq\. ysis, hybridized to a single fragment 2.3 kilobases in size in The Taq\ digestion was conducted in the same manner but performed Southern blots of the fibroblast DNAs and to a 0.75-kilobase at 65°Covernight. Digested DNAs were then mixed with 5% glycerol fragment of HeLa DNA (Fig. \B). These DNAs were digested and bromophenol blue (0.5 jig/ml) and loaded onto 0.8% agarose gels. with Pvull. Electrophoresis was carried out in Tris acetate buffer (pH 7.85) [40 The chromosome 14-specific probe, pAWlOl, hybridized to mM Tris acetate (pH 7.85): 1 mM EDTA] at 0.25 mA/cm for 8 h. DNA fragments of 20 and 17 kilobases in size with fibroblast GM- fragments were then transferred onto nitrocellulose filters by the method of Southern (19). Filters were hybridized to heat-denatured 77 DNA, 18.5 and 17 kilobases in size with fibroblast IMR-90 32P-labeled probe DNA (1 x IO6cpm/ml; specific activity, 5 to 9 x 10" DNA, and to a single 17-kilobase fragment with HeLa DNA cpm//jg of DNA) at 67°Covernight.
Recommended publications
  • Searching the Genomes of Inbred Mouse Strains for Incompatibilities That Reproductively Isolate Their Wild Relatives
    Journal of Heredity 2007:98(2):115–122 ª The American Genetic Association. 2007. All rights reserved. doi:10.1093/jhered/esl064 For permissions, please email: [email protected]. Advance Access publication January 5, 2007 Searching the Genomes of Inbred Mouse Strains for Incompatibilities That Reproductively Isolate Their Wild Relatives BRET A. PAYSEUR AND MICHAEL PLACE From the Laboratory of Genetics, University of Wisconsin, Madison, WI 53706. Address correspondence to the author at the address above, or e-mail: [email protected]. Abstract Identification of the genes that underlie reproductive isolation provides important insights into the process of speciation. According to the Dobzhansky–Muller model, these genes suffer disrupted interactions in hybrids due to independent di- vergence in separate populations. In hybrid populations, natural selection acts to remove the deleterious heterospecific com- binations that cause these functional disruptions. When selection is strong, this process can maintain multilocus associations, primarily between conspecific alleles, providing a signature that can be used to locate incompatibilities. We applied this logic to populations of house mice that were formed by hybridization involving two species that show partial reproductive isolation, Mus domesticus and Mus musculus. Using molecular markers likely to be informative about species ancestry, we scanned the genomes of 1) classical inbred strains and 2) recombinant inbred lines for pairs of loci that showed extreme linkage disequi- libria. By using the same set of markers, we identified a list of locus pairs that displayed similar patterns in both scans. These genomic regions may contain genes that contribute to reproductive isolation between M. domesticus and M.
    [Show full text]
  • Hormonal Regulation of TSEI-Repressed Genes:Evidence
    MOLECULAR AND CELLULAR BIOLOGY, JUlY 1989, p. 2837-2846 Vol. 9, No. 7 0270-7306/89/072837-10$02.00/0 Copyright C) 1989, American Society for Microbiology Hormonal Regulation of TSEI-Repressed Genes: Evidence for Multiple Genetic Controls in Extinction MATHEW J. THAYER AND R. E. K. FOURNIER* Department of Molecul(ar Medicine, Fred Hiutchinson Cancer Research Center, 1124 Columbia Street, Seattle, Washington 98104 Received 9 January 1989/Accepted 26 March 1989 Somatic cell hybrids formed by fusing hepatoma cells with fibroblasts generally fail to express liver functions, a phenomenon termed extinction. Previous studies demonstrated that extinction of the genes encoding tyrosine aminotransferase, phosphoenolpyruvate carboxykinase, and argininosuccinate synthetase is mediated by a specific genetic locus (TSEI) that maps to mouse chromosome 11 and human chromosome 17. In this report, we show that full repression of these genes requires a genetic factor in addition to TSE1. This conclusion is based on the observation that residual gene activity was apparent in monochromosomal hybrids retaining human TSEI but not in complex hybrids retaining many fibroblast chromosomes. Furthermore, TSE1- repressed genes were hormone inducible, whereas fully extinguished genes were not. Analysis of hybrid segregants indicated that genetic loci required for the complete repression phenotype were distinct from TSE1. Tissue-specific gene expression in mammalian cells is ing that single fibroblast chromosome are extinguished for primarily regulated at the level of transcription (8). A par- both serum albumin and alcohol dehydrogenase gene activ- ticular gene may account for a large fraction of total tran- ity (A. C. Chin and R. E. K. Fournier, submitted for publi- scription in one cell type yet be virtually silent in other cell cation).
    [Show full text]
  • 134 Mb (Almost the Same As the Size of Chromosome 10). It Is ~4–4.5% of the Total Human Genome
    Chromosome 11 ©Chromosome Disorder Outreach Inc. (CDO) Technical genetic content provided by Dr. Iosif Lurie, M.D. Ph.D Medical Geneticist and CDO Medical Consultant/Advisor. Ideogram courtesy of the University of Washington Department of Pathology: ©1994 David Adler.hum_11.gif Introduction The genetic size of chromosome 11 is ~134 Mb (almost the same as the size of chromosome 10). It is ~4–4.5% of the total human genome. The length of its short arm is ~50 Mb; the length of its long arm in ~84 Mb. Chromosome 11 is a very gene–rich area. It contains ~1,500 genes. Mutations of ~200 of these genes are known to cause birth defects or some functional abnormalities. The short arm of chromosome 11 contains a region which is known to be imprinted. As a result duplications of this region will have different manifestations depending on the sex of the parent responsible for this defect. Phenotypes of persons with duplications of the maternal origin will be different from the phenotypes of the persons with a paternal duplication of the same area. There are ~1,400 patients with different structural abnormalities of chromosome 11 as the only abnormality or in association with abnormalities for other chromosomes. At least 800 of these patients had different deletions of chromosome 11. Deletions of the short arm have been reported in ~250 patients (including those with an additional imbalance); deletions of the long arm have been described in ~550 patients. There are two syndromes caused by deletions of the short arm (both of these syndromes have been known for several years) and one well–known syndrome caused by distal deletions of the long arm (Jacobsen syndrome).
    [Show full text]
  • The KMT1A-GATA3-STAT3 Circuit Is a Novel Self-Renewal Signaling of Human Bladder Cancer Stem Cells Zhao Yang1, Luyun He2,3, Kais
    The KMT1A-GATA3-STAT3 circuit is a novel self-renewal signaling of human bladder cancer stem cells Zhao Yang1, Luyun He2,3, Kaisu Lin4, Yun Zhang1, Aihua Deng1, Yong Liang1, Chong Li2, 5, & Tingyi Wen1, 6, 1CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China 2Core Facility for Protein Research, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China 3CAS Key Laboratory of Infection and Immunity, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China 4Department of Oncology, the Second Affiliated Hospital of Soochow University, Suzhou 215000, China 5Beijing Jianlan Institute of Medicine, Beijing 100190, China 6Savaid Medical School, University of Chinese Academy of Sciences, Beijing 100049, China Correspondence author: Tingyi Wen, e-mail: [email protected] Chong Li, e-mail: [email protected] Supplementary Figure S1. Isolation of human bladder cancer stem cells. BCMab1 and CD44 were used to isolate bladder cancer stem cells (BCSCs: BCMab1+CD44+) and bladder cancer non-stem cells (BCNSCs: BCMab1-CD44-) from EJ, samples #1 and #2 by flow cytometry. Supplementary Figure S2. Gene ontology analysis of downregulated genes of human BCSCs. (A) Pathway enrichment of 103 downregulated genes in BCSCs. (B) The seven downregulated genes in BCSCs participating in centromeric heterochromatin, mRNA-3’-UTR binding and translation regulator activity signaling pathways were validated by qRT-PCR. Data are presented as mean ± SD. P < 0.05; P < 0.01. Supplementary Figure S3. The expression of KMT1A is higher in human BC than that in peri-tumor tissues. (A) The expression of KMT1A was higher in BC samples than that in peri-tumors as assessed by immunohistochemistry, Scale bar = 50 m.
    [Show full text]
  • Evidence for Linkage of Regions on Chromosomes 6 and 11 to Plasma Glucose Concentrations in Mexican Americans Michael P
    Downloaded from genome.cshlp.org on September 26, 2021 - Published by Cold Spring Harbor Laboratory Press RESEARCH Evidence for Linkage of Regions on Chromosomes 6 and 11 to Plasma Glucose Concentrations in Mexican Americans Michael P. Stern, 1'4 Ravindranath Duggirala, 1 Braxton D. Mitchell, 2 Laurie J. Reinhart, ~ Sailaja Shivakumar, ~ Patricia A. Shipman, 3 Olga C. Uresandi, 3 Edgardo Benavides, 3 John Blangero, 2 and Peter O'Connell 3 1Division of Clinical Epidemiology, Department of Medicine, and 3Department of Pathology, University of Texas Health Science Center, San Antonio, Texas 78284; 2Department of Genetics, Southwest Foundation for Biomedical Research, San Antonio, Texas 78245 The genetic factors involved in type I1 diabetes are still unknown. To address this problem, we are creating a I0 to 15; cM genetic map on 444 individuals from 32 Mexican American families ascertained on a type !I diabetic proband. Using highly polymorphic microsatellite markers and a multipoint variance components method, we found evidence for linkage of plasma glucose concentration 2 hr after oral glucose administration to two regions on chromosome I1: Ig-hemoglobin (HBB} and markers DllS899/DIISI324 near the sulfonylurea receptor (SUR) gene. lod scores at these two loci were 2.77 and 3.37, respectively. The SUR gene region accounted for 4-4.7% of the phenotypic variance. Evidence for linkage to fasting glucose concentration was also observed for two loci on chromosome 6, one of which is identical to a proposed susceptibility locus for type I diabetes {D6S290). When diabetics were excluded from the analyses, all lod scores became zero, suggesting that the observed linkages were with the trait diabetes rather than with normal variation in glucose levels.
    [Show full text]
  • Application of Microarray-Based Comparative Genomic Hybridization in Prenatal and Postnatal Settings: Three Case Reports
    SAGE-Hindawi Access to Research Genetics Research International Volume 2011, Article ID 976398, 9 pages doi:10.4061/2011/976398 Case Report Application of Microarray-Based Comparative Genomic Hybridization in Prenatal and Postnatal Settings: Three Case Reports Jing Liu, Francois Bernier, Julie Lauzon, R. Brian Lowry, and Judy Chernos Department of Medical Genetics, University of Calgary, 2888 Shaganappi Trail NW, Calgary, AB, Canada T3B 6A8 Correspondence should be addressed to Judy Chernos, [email protected] Received 16 February 2011; Revised 20 April 2011; Accepted 20 May 2011 Academic Editor: Reha Toydemir Copyright © 2011 Jing Liu et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Microarray-based comparative genomic hybridization (array CGH) is a newly emerged molecular cytogenetic technique for rapid evaluation of the entire genome with sub-megabase resolution. It allows for the comprehensive investigation of thousands and millions of genomic loci at once and therefore enables the efficient detection of DNA copy number variations (a.k.a, cryptic genomic imbalances). The development and the clinical application of array CGH have revolutionized the diagnostic process in patients and has provided a clue to many unidentified or unexplained diseases which are suspected to have a genetic cause. In this paper, we present three clinical cases in both prenatal and postnatal settings. Among all, array CGH played a major discovery role to reveal the cryptic and/or complex nature of chromosome arrangements. By identifying the genetic causes responsible for the clinical observation in patients, array CGH has provided accurate diagnosis and appropriate clinical management in a timely and efficient manner.
    [Show full text]
  • Non-Random X-Chromosome Inactivation in Mouse X-Autosome Translocation Embryos—Location of the Inactivation Centre
    J. Embryol. exp. Morph. 78, 1-22 (1983) Printed in Great Britain (E) The Company of Biologists Limited 1983 Non-random X-chromosome inactivation in mouse X-autosome translocation embryos—location of the inactivation centre By SOHAILA RASTAN1 From the Division of Comparative Medicine, Clinical Research Centre, Harrow SUMMARY X-chromosome inactivation was investigated cytologically using the modified Katida method which differentially stains inactive X-chromosome material at metaphase in balanced 13|-day female embryos heterozygous for four X-autosome rearrangements, reciprocal trans- locations T(X;4)37H, T(X;11)38H and T(X;16)16H (Searle's translocation) and the insertion translocation Is(7;X)lCt (Cattanach's translocation). In all cases non-random inactivation was found. In the reciprocal translocation heterozygotes only one translocation product ever showed Kanda staining. In addition in a proportion of cells from T(X;4)37H, T(X;11)38H &nd Is(7;X)lCt the Kanda staining revealed differential staining of X-chromosome material and attached autosomal material within the translocation product. In a study of 8£-day female embryos doubly heterozygous for Searle's translocation and Cattanach's translocation two unbalanced types of embryo were found. In one type of unbalanced female embryo of the karyotype 40(X(7)/X16;16/16) no inactivated X- chromosomal material is found. A second unbalanced type of female embryo, of the presump- tive karyotype 40(X(7)/XN;16x/l6) was found in which two inactivated chromosomes were present in the majority of metaphase spreads. A simple model for the initiation of X- chromosome inactivation based on the presence of a single inactivation centre distal to the breakpoint in Searle's translocation explains these findings.
    [Show full text]
  • Chromosome 10
    Chromosome 10 Description Humans normally have 46 chromosomes in each cell, divided into 23 pairs. Two copies of chromosome 10, one copy inherited from each parent, form one of the pairs. Chromosome 10 spans more than 133 million DNA building blocks (base pairs) and represents between 4 and 4.5 percent of the total DNA in cells. Identifying genes on each chromosome is an active area of genetic research. Because researchers use different approaches to predict the number of genes on each chromosome, the estimated number of genes varies. Chromosome 10 likely contains 700 to 800 genes that provide instructions for making proteins. These proteins perform a variety of different roles in the body. Health Conditions Related to Chromosomal Changes The following chromosomal conditions are associated with changes in the structure or number of copies of chromosome 10. 10q26 deletion syndrome 10q26 deletion syndrome is a condition that results from the loss (deletion) of a small piece of chromosome 10 in each cell. The deletion occurs on the long (q) arm of the chromosome at a position designated 10q26. The signs and symptoms of 10q26 deletion syndrome vary widely, even among affected members of the same family. Affected individuals may have distinctive facial features, growth problems, mild to moderate intellectual disability, developmental delay, genital abnormalities in males, or skeletal or heart defects. People with 10q26 deletion syndrome are missing between 3.5 million and 17 million DNA building blocks (base pairs), also written as 3.5 and 17 megabases (Mb), at position q26 on chromosome 10. The exact size of the deletion varies, and it is unclear what exact region needs to be deleted to cause the condition.
    [Show full text]
  • The Nuclear Position of Pericentromeric DNA of Chromosome 11 Appears to Be Random in G<Subscript>O</Subscript> and N
    UvA-DARE (Digital Academic Repository) The nuclear position of pericentromeric DNA of chromosome 11 appears to be random in G0 and non-random in G1 human lymphocytes Hulspas, R.; Houtsmuller, A.; Krijtenburg, P.-J.; Bauman, J.G.J.; Nanninga, N. DOI 10.1007/BF00352253 Publication date 1994 Published in Chromosoma Link to publication Citation for published version (APA): Hulspas, R., Houtsmuller, A., Krijtenburg, P-J., Bauman, J. G. J., & Nanninga, N. (1994). The nuclear position of pericentromeric DNA of chromosome 11 appears to be random in G0 and non-random in G1 human lymphocytes. Chromosoma, 103, 286-292. https://doi.org/10.1007/BF00352253 General rights It is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), other than for strictly personal, individual use, unless the work is under an open content license (like Creative Commons). Disclaimer/Complaints regulations If you believe that digital publication of certain material infringes any of your rights or (privacy) interests, please let the Library know, stating your reasons. In case of a legitimate complaint, the Library will make the material inaccessible and/or remove it from the website. Please Ask the Library: https://uba.uva.nl/en/contact, or a letter to: Library of the University of Amsterdam, Secretariat, Singel 425, 1012 WP Amsterdam, The Netherlands. You will be contacted as soon as possible. UvA-DARE is a service provided by the library of the University of Amsterdam (https://dare.uva.nl) Download date:01 Oct 2021 Chromosoma (1994) 103:286-292 CHROMOSOMA Springer-Verlag 1994 The nuclear position of pericentromeric DNA of chromosome 11 appears to be random in G Oand non-random in G 1 human lymphocytes R.
    [Show full text]
  • Satellite DNA at the Centromere Is Dispensable for Segregation Fidelity
    G C A T T A C G G C A T genes Brief Report Satellite DNA at the Centromere Is Dispensable for Segregation Fidelity Annalisa Roberti, Mirella Bensi, Alice Mazzagatti, Francesca M. Piras, Solomon G. Nergadze , Elena Giulotto * and Elena Raimondi * Department of Biology and Biotechnology “L. Spallanzani”, University of Pavia, Via Ferrata 1, 27100 Pavia, Italy; [email protected] (A.R.); [email protected] (M.B.); [email protected] (A.M.); [email protected] (F.M.P.); [email protected] (S.G.N.) * Correspondence: [email protected] (E.G.); [email protected] (E.R.) Received: 7 June 2019; Accepted: 19 June 2019; Published: 20 June 2019 Abstract: The typical vertebrate centromeres contain long stretches of highly repeated DNA sequences (satellite DNA). We previously demonstrated that the karyotypes of the species belonging to the genus Equus are characterized by the presence of satellite-free and satellite-based centromeres and represent a unique biological model for the study of centromere organization and behavior. Using horse primary fibroblasts cultured in vitro, we compared the segregation fidelity of chromosome 11, whose centromere is satellite-free, with that of chromosome 13, which has similar size and a centromere containing long stretches of satellite DNA. The mitotic stability of the two chromosomes was compared under normal conditions and under mitotic stress induced by the spindle inhibitor, nocodazole. Two independent molecular-cytogenetic approaches were used—the interphase aneuploidy analysis and the cytokinesis-block micronucleus assay. Both assays were coupled to fluorescence in situ hybridization with chromosome specific probes in order to identify chromosome 11 and chromosome 13, respectively.
    [Show full text]
  • Diatom Centromeres Suggest a Mechanism for Nuclear DNA Acquisition
    Diatom centromeres suggest a mechanism for nuclear PNAS PLUS DNA acquisition Rachel E. Dinera,b, Chari M. Noddingsc, Nathan C. Lianc, Anthony K. Kangc, Jeffrey B. McQuaida,b, Jelena Jablanovicb, Josh L. Espinozab, Ngocquynh A. Nguyenc, Miguel A. Anzelmatti Jr.b, Jakob Janssonc, Vincent A. Bielinskic, Bogumil J. Karasc,1, Christopher L. Dupontb, Andrew E. Allena,b, and Philip D. Weymanc,2 aIntegrative Oceanography Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA 92037; bMicrobial and Environmental Genomics Group, J. Craig Venter Institute, La Jolla, CA 92037; and cSynthetic Biology and Bioenergy Group, J. Craig Venter Institute, La Jolla, CA 92037 Edited by James A. Birchler, Division of Biological Sciences, University of Missouri, Columbia, MO, and approved June 13, 2017 (received for review January 17, 2017) Centromeres are essential for cell division and growth in all eukary- transposons, which can vary substantially in copy number and otes, and knowledge of their sequence and structure guides the organization (16). A common feature of centromeric DNA in many development of artificial chromosomes for functional cellular biol- eukaryotes is low-GC content. Centromeres of Schizosaccharomyces ogy studies. Centromeric proteins are conserved among eukaryotes; pombe and other yeast species feature an unconserved core of AT- however, centromeric DNA sequences are highly variable. We rich DNA sequence often surrounded by inverted repeats (17–20). combined forward and reverse genetic approaches with chromatin The centromeres of the protist Plasmodium have no apparent se- immunoprecipitation to identify centromeres of the model diatom quence similarity besides being 2–4-kb regions of extremely low-GC Phaeodactylum tricornutum .
    [Show full text]
  • Loss of Heterozygosity on Chromosomes 11 and 17 Are Markers of Recurrence in TCC of the Bladder
    British Journal of Cancer (2001) 85(12), 1894–1899 © 2001 Cancer Research Campaign doi: 10.1054/ bjoc.2001.2159, available online at http://www.idealibrary.com on http://www.bjcancer.com Loss of heterozygosity on chromosomes 11 and 17 are markers of recurrence in TCC of the bladder J Edwards1, P Duncan1, JJ Going2, KM Grigor3, AD Watters1 and JMS Bartlett1 1University Department of Surgery and 2University Department of Pathology, Glasgow Royal Infirmary, Glasgow, G31 2ER; and 3University Department of Pathology, Edinburgh Royal Infirmary, Edinburgh, EH8 9AG, UK Summary Approximately 2/3 of patients diagnosed with superficial transitional cell carcinoma of the urinary bladder (TCC) will recur within 2 years. Loss of chromosome 9 and loss of heterozygosity (LOH) at 9q34 in index TCCs identify a subset of patients at high risk of recurrence. This study explores genetic alterations on chromosomes 4, 8, 11 and 17 as predictors of recurrence. A total of 109 carcinomas were investigated at 26 loci. DNA was extracted from microdissected archival normal/tumour tissue and was analysed for loss of heterozygosity (LOH). Fluorescent PCR was performed and genotyping carried out on a Perkin Elmer ABI377 sequencer. LOH of D11S490 or D17S928 was significantly more frequent in index carcinomas of patients who experienced recurrence compared to those with no recurrence (P = 0.004 and 0.019 respectively). These results suggest that loss of these regions is associated with recurrence of TCC. Further investigation is required to identify genes in these regions,
    [Show full text]