Inhibition of Hedgehog Signaling Suppresses Proliferation And
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Rare Variant Analysis of Human and Rodent Obesity Genes in Individuals with Severe Childhood Obesity Received: 11 November 2016 Audrey E
www.nature.com/scientificreports OPEN Rare Variant Analysis of Human and Rodent Obesity Genes in Individuals with Severe Childhood Obesity Received: 11 November 2016 Audrey E. Hendricks1,2, Elena G. Bochukova3,4, Gaëlle Marenne1, Julia M. Keogh3, Neli Accepted: 10 April 2017 Atanassova3, Rebecca Bounds3, Eleanor Wheeler1, Vanisha Mistry3, Elana Henning3, Published: xx xx xxxx Understanding Society Scientific Group*, Antje Körner5,6, Dawn Muddyman1, Shane McCarthy1, Anke Hinney7, Johannes Hebebrand7, Robert A. Scott8, Claudia Langenberg8, Nick J. Wareham8, Praveen Surendran9, Joanna M. Howson9, Adam S. Butterworth9,10, John Danesh1,9,10, EPIC-CVD Consortium*, Børge G Nordestgaard11,12, Sune F Nielsen11,12, Shoaib Afzal11,12, SofiaPa padia3, SofieAshford 3, Sumedha Garg3, Glenn L. Millhauser13, Rafael I. Palomino13, Alexandra Kwasniewska3, Ioanna Tachmazidou1, Stephen O’Rahilly3, Eleftheria Zeggini1, UK10K Consortium*, Inês Barroso1,3 & I. Sadaf Farooqi3 Obesity is a genetically heterogeneous disorder. Using targeted and whole-exome sequencing, we studied 32 human and 87 rodent obesity genes in 2,548 severely obese children and 1,117 controls. We identified 52 variants contributing to obesity in 2% of cases including multiple novel variants in GNAS, which were sometimes found with accelerated growth rather than short stature as described previously. Nominally significant associations were found for rare functional variants inBBS1 , BBS9, GNAS, MKKS, CLOCK and ANGPTL6. The p.S284X variant in ANGPTL6 drives the association signal (rs201622589, MAF~0.1%, odds ratio = 10.13, p-value = 0.042) and results in complete loss of secretion in cells. Further analysis including additional case-control studies and population controls (N = 260,642) did not support association of this variant with obesity (odds ratio = 2.34, p-value = 2.59 × 10−3), highlighting the challenges of testing rare variant associations and the need for very large sample sizes. -
The Bbsome Assembly Is Spatially Controlled by BBS1 and BBS4 in Human Cells
bioRxiv preprint doi: https://doi.org/10.1101/2020.03.20.000091; this version posted March 20, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. The BBSome assembly is spatially controlled by BBS1 and BBS4 in human cells Avishek Prasai1, Marketa Schmidt Cernohorska1, Klara Ruppova1, Veronika Niederlova1, Monika Andelova1, Peter Draber1, Ondrej Stepanek1#, Martina Huranova1# 1 Laboratory of Adaptive Immunity, Institute of Molecular Genetics of the Czech Academy of Sciences, 14220 Prague, Czech Republic # Correspondence to Martina Huranova [email protected] or Ondrej Stepanek [email protected] Laboratory of Adaptive Immunity Institute of Molecular Genetics Czech Academy of Sciences Videnska 1083 14220 Prague Czech Republic 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.03.20.000091; this version posted March 20, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Key words: Bardet-Biedl Syndrome, BBSome, assembly, cilium, ciliopathy, protein sorting Abstract Bardet-Biedl Syndrome (BBS) is a pleiotropic ciliopathy caused by dysfunction of primary cilia. Most BBS patients carry mutations in one of eight genes encoding for subunits of a protein complex, BBSome, which mediates the trafficking of ciliary cargoes. Although, the structure of the BBSome has been resolved recently, the mechanism of assembly of this complicated complex in living cells is poorly understood. -
Diagnostic Test: OBESITÀ GENETICHE MENDELIANE
Diagnostic test: OBESITÀ GENETICHE MENDELIANE MENDELIAN OBESITY Panel / Illumina Custom panel, Nextera Enrichment Technology / Coding exons and flanking regions of genes List of gene(s) and disease(s) tested: ALMS1, ARL6, BBIP1, BBS1, BBS10, BBS12, BBS2, BBS4, BBS5, BBS7, BBS9, C8orf37, CARTPT, CEP19, CEP290, DYRK1B, GNAS, HDAC8, IFT172, IFT27, INPP5E, INSR, KSR2, LEP, LEPR, LZTFL1, MC3R, MC4R, MCHR1, MEGF8, MKKS, MKS1, NR0B2, PCSK1, PHF6, POMC, PPARG, PPP1R3A, RAB23, SDCCAG8, SH2B1, SIM1, TRIM32, TTC8, UCP3, VPS13B, WDPCP ORPHA:98267 Obesità non sindromica genetica Obesità sindromica Tabella Elenco delle forme di OBESITÀ GENETICHE MENDELIANE e la loro eziologia genetica Phenotype OMIM# Gene OMIM# Phenotype Gene Alstrom syndrome 203800 ALMS1 606844 Bardet-Biedl syndrome 3 600151 ARL6 608845 Bardet-Biedl syndrome 18 615995 BBIP1 613605 Bardet-Biedl syndrome 1 209900 BBS1 209901 Bardet-Biedl syndrome 10 615987 BBS10 610148 Bardet-Biedl syndrome 12 615989 BBS12 610683 Bardet-Biedl syndrome 2 615981 BBS2 606151 Bardet-Biedl syndrome 4 615982 BBS4 600374 Bardet-Biedl syndrome 5 615983 BBS5 603650 Bardet-Biedl syndrome 7 615984 BBS7 607590 Bardet-Biedl syndrome 21 617406 C8orf37 614477 Obesity, severe HGMD CARTPT 602606 Morbid obesity and spermatogenic failure; Bardet-Biedl syndrome; Morbid obesity 615703; HGMD CEP19 615586 Bardet-Biedl syndrome 14 615991 CEP290 610142 Abdominal obesity-metabolic syndrome 3 615812 DYRK1B 604556 Pseudohypoparathyroidism Ia; Pseudohypoparathyroidism Ic 103580; 612462 GNAS 139320 Cornelia de Lange syndrome 5 300882 -
Loss of C. Elegans BBS-7 and BBS-8 Protein Function Results in Cilia Defects and Compromised Intraflagellar Transport
Downloaded from genesdev.cshlp.org on September 29, 2021 - Published by Cold Spring Harbor Laboratory Press Loss of C. elegans BBS-7 and BBS-8 protein function results in cilia defects and compromised intraflagellar transport Oliver E. Blacque,1 Michael J. Reardon,2 Chunmei Li,1 Jonathan McCarthy,1 Moe R. Mahjoub,3 Stephen J. Ansley,4 Jose L. Badano,4 Allan K. Mah,1 Philip L. Beales,6 William S. Davidson,1 Robert C. Johnsen,1 Mark Audeh,2 Ronald H.A. Plasterk,7 David L. Baillie,1 Nicholas Katsanis,4,5 Lynne M. Quarmby,3 Stephen R. Wicks,2 and Michel R. Leroux1,8 1Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, B.C. V5A 1S6, Canada; 2Department of Biology, Boston College, Chestnut Hill, Massachusetts 02467, USA; 3Department of Biological Sciences, Simon Fraser University, Burnaby, B.C. V5A 1S6, Canada; 4Institute of Genetic Medicine and 5Wilmer Eye Institute, Johns Hopkins University, Baltimore, Maryland 21287, USA; 6Molecular Medicine Unit, Institute of Child Health, University College London, London WC1 1EH, UK; 7The Hubrecht Laboratory, Netherlands Institute of Developmental Biology, Uppsalalaan 8, 3584CT, Utrecht, The Netherlands Bardet-Biedl syndrome (BBS) is a genetically heterogeneous developmental disorder whose molecular basis is largely unknown. Here, we show that mutations in the Caenorhabditis elegans bbs-7 and bbs-8 genes cause structural and functional defects in cilia. C. elegans BBS proteins localize predominantly at the base of cilia, and like proteins involved in intraflagellar transport (IFT), a process necessary for cilia biogenesis and maintenance, move bidirectionally along the ciliary axoneme. Importantly, we demonstrate that BBS-7 and BBS-8 are required for the normal localization/motility of the IFT proteins OSM-5/Polaris and CHE-11, and to a notably lesser extent, CHE-2. -
Weight Patterns and Genetics in a Rare Obesity Syndrome
Received: 22 May 2020 Accepted: 30 June 2020 DOI: 10.1111/ijpo.12703 ORIGINAL RESEARCH Bardet-Biedl syndrome: Weight patterns and genetics in a rare obesity syndrome Jeremy Pomeroy1 | Anthony D. Krentz2 | Jesse G. Richardson1 | Richard L. Berg1 | Jeffrey J. VanWormer1 | Robert M. Haws1,3 1Clinical Research Center, Marshfield Clinic Research Institute, Marshfield, Wisconsin Summary 2Prevention Genetics, Marshfield, Wisconsin Background: Bardet-Biedl syndrome (BBS) is a rare genetic disorder that severely 3Department of Pediatrics, Marshfield Clinic inhibits primary cilia function. BBS is typified by obesity in adulthood, but pediatric Health System, Marshfield, Wisconsin weight patterns, and thus optimal periods of intervention, are poorly understood. Correspondence Objectives: To examine body mass differences by age, gender, and genotype in chil- Jeremy Pomeroy, Marshfield Clinic Research Institute, 1000 North Oak Ave, Marshfield, WI dren and adolescents with BBS. 54449. Methods: We utilized the largest international registry of BBS phenotypes. Anthro- Email: [email protected] pometric and genetic data were obtained from medical records or participant/family interviews. Participants were stratified by age and sex categories. Genotype and obe- sity phenotype were investigated in a subset of participants with available data. Results: Height and weight measurements were available for 552 unique individuals with BBS. The majority of birth weights were in the normal range, but rates of over- weight or obesity rapidly increased in early childhood, exceeding 90% after age 5. Weight z-scores in groups >2 years were above 2.0, while height z-scores approached 1.0, but were close to 0.0 in adolescents. Relative to those with the BBS10 genotype, the BBS1 cohort had a lower BMI z-score in the 2-5 and 6-11 age groups, with similar BMI z-scores thereafter. -
Supporting Information
Supporting Information Seo et al. 10.1073/pnas.0910268107 SI Materials and Methods of Iowa Proteomics Facility and analyzed with LTQ XL linear Plasmids and Antibodies. All expression plasmids were constructed ion trap mass spectrometer (Thermo Scientific). with human BBS genes in pCS2 and phCMV2 backbone with fi fi fi indicated tags at the N terminus. Deletion and point mutagenesis Tandem Af nity Puri cation. Constructs for tandem af nity puri- fi was performed using PfuUltra II Fusion HS DNA polymerase cation of BBS5 and BBS7 were generated with N-terminal (Stratagene) and appropriate primers (Integrated DNA Tech- 3xFLAG tag and S tag in CS2 plasmid (FS-BBS5 and FS-BBS7, nology). Primer sequences are available upon request. For RNAi respectively). Stable HEK293T cell lines expressing these genes of BBS6 and BBS12, we generated stable HEK293T cell lines were established and proteins associated with BBS5 and BBS7 fi fi expressing shRNAs against these genes (GIPZ shRNAmir; were tandem af nity puri ed using anti-FLAG and S-protein OpenBiosystems). Expression of BBS10, CCT1, CCT2, and (Novagen) affinity gels. Others are same as above. Protein CCT3 was blocked by transient transfection of siRNAs (ON- identities were determined by Western blotting. TARGETplus SMARTpool; Dharmacon). For RNAi control, we used Nonsilencing GIPZ vector (OpenBiosystems) and ON- Quantitative RT-PCR. Total RNA was extracted from HEK293T TARGETplus Non-Targeting Pool siRNAs (Dharmacon). Anti- cells or mouse testis and eye with TRIzol Reagent (Invitrogen) ’ μ bodies against BBS1, BBS2, BBS4, and BBS7 were described following the manufacturer s instructions. A 1- g quantity of previously (1). -
Knockdown of the BBS10 Gene Product
ndrom Sy es tic & e G n e e n G e f T o Zacchia et al., J Genet Syndr Gene Ther 2014, 5:3 Journal of Genetic Syndromes h l e a r n a DOI: 10.4172/2157-7412.1000222 r p u y o J ISSN: 2157-7412 & Gene Therapy Research Article Open Access Knockdown of the BBS10 Gene Product Affects Apical Targeting of AQP2 in Renal Cells: A Possible Explanation for the Polyuria Associated with Bardet-Biedl Syndrome Miriam Zacchia1, Gabriella Esposito2,3, Monica Carmosino7, Claudia Barbieri7, Enza Zacchia1,5, Alessia Anna Crispo2, Tiziana Fioretti2,3, Francesco Trepiccione1, Valentina Di Iorio6, Francesca Simonelli6, Francesco Salvatore2,4, Giovambattista Capasso1, Maria Svelto7,8 and Giuseppe Procino7,8* 1Chair of Nephrology, Second University of Naples, Italy 2CEINGE-Biotecnologie Avanzate s.c. a r.l., Naples, Italy 3Department of Molecular Medicine and Medical Biotechnologies, University of Naples Federico II, Italy 4IRCCS SDN Foundation Naples, Italy 5Institute of Genetics and Biophysics of the National Research Council (CNR), Naples, Italy 6Eye Clinic, Multidisciplinary Department of Medical, Surgical and Dental Sciences - Second University of Naples, Italy 7Department of Biosciences, Biotechnologies and Biopharmaceutics, University of Bari, Italy 8Center of Excellence in Comparative Genomics, Bari, Italy Abstract Objective: Bardet-Biedl syndrome (BBS) is a rare genetic disorder whose clinical features include renal abnormalities, which ranges from renal malformations to renal failure. Polyuria and iso-hyposthenuria are common renal dysfunctions in BBS patients even in the presence of normal GFR. The mechanism underlying this defect is unknown and no genotype-phenotype correlation has yet been reported. -
Mouse Mutants As Models for Congenital Retinal Disorders
Experimental Eye Research 81 (2005) 503–512 www.elsevier.com/locate/yexer Review Mouse mutants as models for congenital retinal disorders Claudia Dalke*, Jochen Graw GSF-National Research Center for Environment and Health, Institute of Developmental Genetics, D-85764 Neuherberg, Germany Received 1 February 2005; accepted in revised form 1 June 2005 Available online 18 July 2005 Abstract Animal models provide a valuable tool for investigating the genetic basis and the pathophysiology of human diseases, and to evaluate therapeutic treatments. To study congenital retinal disorders, mouse mutants have become the most important model organism. Here we review some mouse models, which are related to hereditary disorders (mostly congenital) including retinitis pigmentosa, Leber’s congenital amaurosis, macular disorders and optic atrophy. q 2005 Elsevier Ltd. All rights reserved. Keywords: animal model; retina; mouse; gene mutation; retinal degeneration 1. Introduction Although mouse models are a good tool to investigate retinal disorders, one should keep in mind that the mouse Mice suffering from hereditary eye defects (and in retina is somehow different from a human retina, particular from retinal degenerations) have been collected particularly with respect to the number and distribution of since decades (Keeler, 1924). They allow the study of the photoreceptor cells. The mouse as a nocturnal animal molecular and histological development of retinal degener- has a retina dominated by rods; in contrast, cones are small ations and to characterize the genetic basis underlying in size and represent only 3–5% of the photoreceptors. Mice retinal dysfunction and degeneration. The recent progress of do not form cone-rich areas like the human fovea. -
Structure and Expression Analyses of SVA Elements in Relation to Functional Genes
pISSN 1598-866X eISSN 2234-0742 Genomics Inform 2013;11(3):142-148 G&I Genomics & Informatics http://dx.doi.org/10.5808/GI.2013.11.3.142 ORIGINAL ARTICLE Structure and Expression Analyses of SVA Elements in Relation to Functional Genes Yun-Jeong Kwon, Yuri Choi, Jungwoo Eo, Yu-Na Noh, Jeong-An Gim, Yi-Deun Jung, Ja-Rang Lee, Heui-Soo Kim* Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Korea SINE-VNTR-Alu (SVA) elements are present in hominoid primates and are divided into 6 subfamilies (SVA-A to SVA-F) and active in the human population. Using a bioinformatic tool, 22 SVA element-associated genes are identified in the human genome. In an analysis of genomic structure, SVA elements are detected in the 5′ untranslated region (UTR) of HGSNAT (SVA-B), MRGPRX3 (SVA-D), HYAL1 (SVA-F), TCHH (SVA-F), and ATXN2L (SVA-F) genes, while some elements are observed in the 3′UTR of SPICE1 (SVA-B), TDRKH (SVA-C), GOSR1 (SVA-D), BBS5 (SVA-D), NEK5 (SVA-D), ABHD2 (SVA-F), C1QTNF7 (SVA-F), ORC6L (SVA-F), TMEM69 (SVA-F), and CCDC137 (SVA-F) genes. They could contribute to exon extension or supplying poly A signals. LEPR (SVA-C), ALOX5 (SVA-D), PDS5B (SVA-D), and ABCA10 (SVA-F) genes also showed alternative transcripts by SVA exonization events. Dominant expression of HYAL1_SVA appeared in lung tissues, while HYAL1_noSVA showed ubiquitous expression in various human tissues. Expression of both transcripts (TDRKH_SVA and TDRKH_noSVA) of the TDRKH gene appeared to be ubiquitous. -
Composition and Function of the C1b/C1f Region in the Ciliary Central
www.nature.com/scientificreports OPEN Composition and function of the C1b/C1f region in the ciliary central apparatus Ewa Joachimiak 1*, Anna Osinka 1, Hanan Farahat 1, Bianka Świderska 2, Ewa Sitkiewicz 2, Martyna Poprzeczko 1,3, Hanna Fabczak 1 & Dorota Wloga 1* Motile cilia are ultrastructurally complex cell organelles with the ability to actively move. The highly conserved central apparatus of motile 9 × 2 + 2 cilia is composed of two microtubules and several large microtubule-bound projections, including the C1b/C1f supercomplex. The composition and function of C1b/C1f subunits has only recently started to emerge. We show that in the model ciliate Tetrahymena thermophila, C1b/C1f contains several evolutionarily conserved proteins: Spef2A, Cfap69, Cfap246/ LRGUK, Adgb/androglobin, and a ciliate-specifc protein Tt170/TTHERM_00205170. Deletion of genes encoding either Spef2A or Cfap69 led to a loss of the entire C1b projection and resulted in an abnormal vortex motion of cilia. Loss of either Cfap246 or Adgb caused only minor alterations in ciliary motility. Comparative analyses of wild-type and C1b-defcient mutant ciliomes revealed that the levels of subunits forming the adjacent C2b projection but not C1d projection are greatly reduced, indicating that C1b stabilizes C2b. Moreover, the levels of several IFT and BBS proteins, HSP70, and enzymes that catalyze the fnal steps of the glycolytic pathway: enolase ENO1 and pyruvate kinase PYK1, are also reduced in the C1b-less mutants. Motile cilia and structurally homologous eukaryotic fagella are complex biological nanomachines that propagate fuids and particles along the surface of ciliated epithelia, and power cell motility of protists, zoospores, and male gametes. -
Progressive Characterization of Visual Phenotype in Bardet-Biedl Syndrome Mutant Mice
Genetics Progressive Characterization of Visual Phenotype in Bardet-Biedl Syndrome Mutant Mice Viola Kretschmer,1 Sarita Rani Patnaik,1 Friedrich Kretschmer,2 Mira Manilal Chawda,3 Victor Hernandez-Hernandez,3,4 and Helen Louise May-Simera1 1Cilia Cell Biology, Institute of Molecular Physiology, Johannes Gutenberg University, Mainz, Germany 2Scientific Computing Facility, Max Planck Institute for Brain Research, Frankfurt, Germany 3Genetics and Genomic Medicine Programme, Great Ormond Street Institute of Child Health, University College London, London, United Kingdom 4Department of Life Sciences, College of Health and Life Sciences, Brunel University London, London, United Kingdom Correspondence: Helen Louise May- PURPOSE. Bardet-Biedl syndrome (BBS) is an archetypical ciliopathy caused by defective ciliary Simera, Institute of Molecular Physi- trafficking and consequent function. Insights gained from BBS mouse models are applicable to ology, Johannes Gutenberg Universi- other syndromic and nonsyndromic retinal diseases. This progressive characterization of the ty, Johann-Joachim-Becher-Weg 13- visual phenotype in three BBS mouse models sets a baseline for testing therapeutic 15, Raum 1-521, Mainz 55128, Ger- interventions. many; [email protected]. METHODS. Longitudinal acquisition of electroretinograms, optical coherence tomography Submitted: July 6, 2018 scans, and visual acuity using the optomotor reflex in Bbs6/Mkks, Bbs8/Ttc8, and Bbs5 Accepted: February 17, 2019 knockout mice. Gene and protein expression analysis in vivo and in vitro. Citation: Kretschmer V, Patnaik SR, RESULTS. Complete loss of BBS5, BBS6, or BBS8 leads to different rates of retinal degeneration Kretschmer F, Chawda MM, Hernan- and visual function over time. BBS8-deficient mice showed the fastest rate of degeneration, dez-Hernandez V, May-Simera HL. -
BBS6, BBS10, and BBS12 Form a Complex with CCT/Tric Family Chaperonins and Mediate Bbsome Assembly
BBS6, BBS10, and BBS12 form a complex with CCT/TRiC family chaperonins and mediate BBSome assembly Seongjin Seoa,c, Lisa M. Bayeb, Nathan P. Schulza,c, John S. Becka,c, Qihong Zhanga,c, Diane C. Slusarskib, and Val C. Sheffielda,c,1 aDepartment of Pediatrics, bDepartment of Biology, and cHoward Hughes Medical Institute, University of Iowa, Iowa City, IA 52242 Edited by Kathryn V. Anderson, Sloan-Kettering Institute, New York, NY, and approved November 25, 2009 (received for review September 9, 2009) Bardet-Biedl syndrome (BBS) is a human genetic disorder resulting one component of the BBSome, BBS1, directly interacts with the in obesity, retinal degeneration, polydactyly, and nephropathy. leptin receptor and that leptin signaling is attenuated in BBS Recent studies indicate that trafficking defects to the ciliary mem- gene knockout mice, implicating BBS function in a broad range brane are involved in this syndrome. Here, we show that a novel of membrane receptor signaling (33). complex composed of three chaperonin-like BBS proteins (BBS6, Three of the remaining BBS proteins (BBS6, BBS10, and BBS10, and BBS12) and CCT/TRiC family chaperonins mediates BBS12) have sequence homology to the CCT (also known as BBSome assembly, which transports vesicles to the cilia. Chaperonin- TRiC) family of group II chaperonins (17, 24, 25). CCT proteins like BBS proteins interact with a subset of BBSome subunits and form an ≈900 kDa hetero-oligomeric complex that mediates promote their association with CCT chaperonins. CCT activity is protein folding in an ATP-dependent manner (34, 35). The CCT essential for BBSome assembly, and knockdown of CCT chaperonins complex consists of two stacked rings, each of which is composed in zebrafish results in BBS phenotypes.