Minding the Gaps in Regulation of Do-It-Yourself Biotechnology
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Diybio Things: Open Source Biology Tools As Platforms for Hybrid Knowledge Production and Scientific Participation
UC Berkeley UC Berkeley Previously Published Works Title DIYbio things: Open source biology tools as platforms for hybrid knowledge production and scientific participation Permalink https://escholarship.org/uc/item/90h1s0hf ISBN 9781450331456 Authors Kuznetsov, S Doonan, C Wilson, N et al. Publication Date 2015-04-18 DOI 10.1145/2702123.2702235 License https://creativecommons.org/licenses/by-nc-sa/4.0/ 4.0 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Social Media & Citizen Science CHI 2015, Crossings, Seoul, Korea DIYbio Things: Open Source Biology Tools as Platforms for Hybrid Knowledge Production and Scientific Participation Stacey Kuznetsov1, Carrie Doonan2, Nathan Wilson2, Swarna Mohan2, Scott E. Hudson1, Eric Paulos3 Human-Computer Interaction Institute1 Department of Biological Sciences Electrical Engineering and Carnegie Mellon University Carnegie Mellon University2 Computer Sciences3 Pittsburgh, PA, USA Pittsburgh, PA, USA University of California {stace, hudson}@cmu.edu {cbd, njwilson, Berkeley, CA, USA swm}@andrew.cmu.edu [email protected] ABSTRACT members of the general public in various practices that DIYbio (Do It Yourself Biology) is a growing movement of interpret, critique, and construct scientific knowledge. scientists, hobbyists, artists, and tinkerers who practice biology outside of professional settings. In this paper, we One way of orienting this space for HCI is in terms of present our work with several open source DIYbio tools, publics—groups of people who come together around including OpenPCR and Pearl Blue Transilluminator, issues and work towards resolving shared concerns [5]. which can be used to test DNA samples for specific Within this larger framing, we focus on DIYbio (Do It sequences. -
Of Us Research Program Ethical, Legal, and Social Implications (ELSI)
All of Us Research Program Ethical, Legal, and Social Implications (ELSI) Research Priorities Workshop June 24–25, 2019 Executive Summary The All of Us Research Program’s Ethical, Legal, and Social Implications (ELSI) Research Priorities Workshop was held on June 24–25, 2019. The workshop convened ELSI professionals and All of Us participant ambassadors to help identify ELSI research opportunities using the All of Us Research Program, provide feedback on how to advance ELSI research by using the program and its data resources, and suggest ELSI-related research use cases.1 On Day 1, attendees received information on the program’s research platform, scientific framework and priorities, commitment to diversity, participant engagement strategy, data access and privacy policies, and new activities that are being planned. They also received a demonstration of the All of Us public data browser. Attendees then divided into working groups organized around three themes: (1) genomics; (2) social determinants of health; and (3) legal, regulatory, and policy issues. In these groups, attendees participated in a facilitated activity where they discussed and recorded ELSI research questions of interest and the data needed to answer them, including data with planned availability through the program’s Research Hub. During an open discussion on Day 2, attendees raised significant concerns about the structure of Day 1 and asserted that the program could make better use of their deep and varied expertise by reframing the workshop to allow for exploration of some important ELSI considerations that the program raises, including protecting participants’ rights and privacy and ensuring that participants have a real voice in the program. -
'Do It Yourself Biotechnology' (Diybio) for Open, Inclusive
Do-it-Yourself Healthcare Clinic. Credit: Waag Society ‘Do It Yourself Biotechnology’ (DIYBio) for open, inclusive, responsible Biotechnology This policy brief assesses the potential and challenges of 1) Potential for Inclusivity and Openness in Science “Do-It-Yourself Biotechnology” (DIYBio) for the progression Practitioners of DIYBio, also known as biohackers or DIYBi- of Open Science and Responsible Research and Innovation ologists, aim to ultimately make biotechnology accessible (RRI). It makes recommendations to the European Commis- to anyone. This rapidly growing culture of inclusivity, which sion as to how it can integrate DIYBio into existing science emerged in the United States in the early 2000s, challeng- funding mechanisms and regulatory directives, thereby max- es more conventional academic and industry structures, by imising benefits for European stakeholders. promoting complete access to scientific resources such as in- struments, laboratories and publications. DIYBio activities are conducted in various private and public laboratories outside of traditional academic or corporate in- The aim for a more inclusive and transparent science is also stitutions and are therefore outside the scope of current poli- a key component of the Responsible Research and Innova- cy. The full spectrum of DIYBio activities is also much broader tion10 and Open Science11 policy agendas promoted by the than what is currently understood as Citizen Science. European Commission. As a community built around these values from its inception, the DIYBio movement can be a val- The re-evaluation of funding mechanisms and regulations for uable model for academia as it undergoes a transition to a DIYBio should: more open practice. Case Study 1 (below) describes how the DIYBio space “BioTehna” operationalised openness and inclu- • promote inclusiveness and openness in science, siveness. -
A Fool's Errand
COMMENT by the madness of mobs. Will a crowd- sourced scholarship be dominated by pro- vocative pap that fills without nourishing? Here we must recall first that schol- arship has always been a community MONROE BRENDAN enterprise, driven by building consen- sus among experts10. So the question is not ‘Should we crowdsource?’ but ‘How should we crowdsource?’. Second, we must dispose of the straw-man argument that hundreds of uninformed readers’ opinions will count for more than one Fields medallist’s recommendation. Authority and expertise are central in the Web era as they were in the journal era. The difference is that whereas the paper- based system used subjective criteria to identify authoritative voices, the Web- based one assesses authority recursively from the entire community. We now have a unique opportunity as scholars to guide the evolution of our tools in directions that honour our val- ues and benefit our communities. Here’s what to do. First, try new things: publish new kinds of products, share them in new places and brag about them using new metrics. Intellectual playfulness is a core scholarly virtue. Second, take risks (another scholarly virtue): publishing more papers may be safe, but scholars who establish early leadership in Web- native production will be ahead of the curve as these genres become dominant. A fool’s errand Finally, resist the urge to cling to the trap- pings of scientific excellence rather than Objections to the Creative Commons attribution excellence itself. ‘Publication’ is just one mode of making public and one way of licence are straw men raised by parties who want open validating scholarly excellence. -
Hackerspaces and Diybio in Asia: Connecting Science and Community with Open Data, Kits and Protocols
Journal of Peer Production New perspectives on the implications of peer production for social change http://peerproduction.net Hackerspaces and DIYbio in Asia: connecting science and community with open data, kits and protocols Denisa Kera Abstract: Different hacker, maker and DIY activities in recent years form a global culture with alternative networks of knowledge production and sharing, offering a more resilient and pragmatic response to various challenges. This growth of grassroots science and tinkering based on open data, protocols and DIY kits is often understood as part of a geek culture, which has little if any impact on the larger society. The aim here is to discuss hackerspaces as intermediaries and transnational sites offering unique opportunities for translation between scientific knowledge produced in the labs (official academic and research institutions) and the everyday interests, practices and problems of ordinary people in diverse local contexts around the globe. To demonstrate how hackerspaces function as sites of complex negotiations between various forms of knowledge and practice, and to understand how these global flows of kits and DIY protocols work in the local context, we will compare several examples from Asia (Indonesia, Singapore, and Japan). These emergent, alternative R&D centers revive a link between knowledge creation and community building, and problematize the common, “East - West”, “Modern (Industrial) - Post-industrial - Pre-modern (indigenous)” distinctions, often used when knowledge transfer is discussed. By integrating community building with prototype testing, hackerspaces embody a community based innovation that provides a more resilient policy model for societies facing emerging technologies and numerous deep and far reaching environmental and social challenges. -
The Fourth Paradigm
ABOUT THE FOURTH PARADIGM This book presents the first broad look at the rapidly emerging field of data- THE FOUR intensive science, with the goal of influencing the worldwide scientific and com- puting research communities and inspiring the next generation of scientists. Increasingly, scientific breakthroughs will be powered by advanced computing capabilities that help researchers manipulate and explore massive datasets. The speed at which any given scientific discipline advances will depend on how well its researchers collaborate with one another, and with technologists, in areas of eScience such as databases, workflow management, visualization, and cloud- computing technologies. This collection of essays expands on the vision of pio- T neering computer scientist Jim Gray for a new, fourth paradigm of discovery based H PARADIGM on data-intensive science and offers insights into how it can be fully realized. “The impact of Jim Gray’s thinking is continuing to get people to think in a new way about how data and software are redefining what it means to do science.” —Bill GaTES “I often tell people working in eScience that they aren’t in this field because they are visionaries or super-intelligent—it’s because they care about science The and they are alive now. It is about technology changing the world, and science taking advantage of it, to do more and do better.” —RhyS FRANCIS, AUSTRALIAN eRESEARCH INFRASTRUCTURE COUNCIL F OURTH “One of the greatest challenges for 21st-century science is how we respond to this new era of data-intensive -
The Machine That Would Predict the Future
TECHNOLOGY SPECIAL REPORT The Machine That Would Predic t the If you dropped all the world’s data into a black box, could it become a crystal ball that Futurewould let you see the future—even test what would happen if you chose A over B? One researcher thinks so, and he could soon get a billion euros to build it By David Weinberger In the summer and fall of last year, the Greek financial crisis tore at the seams of the global economy. Having run up a debt that it would never be able to repay, the country faced a number of poten- tial outcomes, all unpleasant. Efforts to slash spending spurred riots in the streets of Athens, while threats of default rattled global financial markets. Many economists argued that Greece should leave the euro zone and devalue its currency, a move that would in theory help the economy grow. “Make no mistake: an orderly euro exit will be hard,” wrote New York Universi- ty economist Nouriel Roubini in the Financial Times. “But watching the slow disorderly implo- sion of the Greek economy and society will be much worse.” No one was sure exactly how the scenario would play out, limit the spread of infectious disease. Altered trade routes could though. Fear spread that if Greece were to abandon the euro, disrupt native ecosystems. The question itself is simple— Spain and Italy might do the same, weakening the central bond Should Greece drop the euro?—but the potential fallout is so of the European Union. Yet the Economist opined that the crisis far-reaching and complex that even the world’s sharpest minds would “bring more fiscal-policy control from Brussels, turning found themselves unable to grasp all the permutations. -
Build Your Own Lab: Do-It-Yourself Biology and the Rise of Citizen Biotech-Economies Morgan Meyer
Build your own lab: Do-it-yourself biology and the rise of citizen biotech-economies Morgan Meyer To cite this version: Morgan Meyer. Build your own lab: Do-it-yourself biology and the rise of citizen biotech-economies. Journal of Peer Production, 2012, 2 (online), 4 p. hal-00710829 HAL Id: hal-00710829 https://hal-mines-paristech.archives-ouvertes.fr/hal-00710829 Submitted on 28 Jun 2013 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Build your own lab » Journal of Peer Production http://peerproduction.net/issues/issue-2/invited-comments/build-... ABOUT ISSUES PEER REVIEW NEWS CONTACT NEW PERSPECTIVES ON THE IMPLICATIONS OF PEER PRODUCTION FOR SOCIAL CHANGE BUILD YOUR OWN LAB Where you are: Home · Issues · Issue #2: Bio/Hardware Hacking · Invited Comments · Build your own lab BUILD YOUR OWN LAB: DO-IT-YOURSELF BIOLOGY AND THE RISE OF CITIZEN BIOTECH-ECONOMIES MORGAN MEYER 1. INTRODUCTION Most articles on garage biology and do-it-yourself (DIY) biology – whether academic papers or media reports – highlight its somewhat “immaterial” cultures or ideologies. The issues usually raised include: the ways in which do-it-yourself biology potentially democratizes science and fosters a citizen science (Wolinsky, 2009), that its practitioners are a “creative proof of the hacker principle” (Ledford, 2010: 650), that the field is an illustration of the open source movement, that concerns about control, security and safety need to be addressed (Sawyer, 2011). -
The Legal Framework for Reproducible Scientific Research Licensing and Copyright
R EPRODUCIBLE RESEARCH The Legal Framework for Reproducible Scientific Research Licensing and Copyright As computational researchers increasingly make their results available in a reproducible way, questions naturally arise regarding copyright, subsequent use and citation, and ownership rights in general. The author proposes the Reproducible Research Standard for all components of scientific researchers’ scholarship, which should encourage replicable scientific investigation through attribution, the facilitation of greater collaboration, and the promotion of the engagement of the larger community in scientific learning and discovery. n the US, when scientists put their original computational work because researchers often research on the Web, it automatically falls need more than just the published article to re- under copyright. However, copyright is produce the results. an unsuitable legal structure for scientific Although this trend seems to be changing, the Iworks. Scientific norms guide scientists to repro- typical journal publishing format doesn’t allow for duce and build on others’ research, and default transmission of supporting files such as accom- copyright law by its very purpose runs counter panying images, source code, or demonstrations to these goals. In this article, I present a meth- of work to interested readers—although some odology for scientists to rescind copyright from journals are beginning to require that code or their work in such a way that it realigns scientific data be released as a precondition for publication, information sharing with long-established scien- (for example, Nature [www.nature.com/authors/ tific norms. editorial_policies/availability.html], The Insight Journal [www.insight-journal.org], and Annals of Options for Researchers Internal Medicine [www.annals.org/cgi/content/ Computational research is becoming more per- full/0000605-200703200-00154v1]). -
Open Source Hardware (OSHW) for Open Science in the Global South: Geek Diplomacy?
7 Open source hardware (OSHW) for open science in the global south: geek diplomacy? Denisa Kera INTRODUCTION The Do-It-Youself biology (DIYbio) movement originated in the U.S. in approximately 2009 around student iGEM synthetic biology competitions (durrett; field 2011; kuznetsov et al. 2012) as well as parallel open biology efforts in Europe and Asia with their connections to bioart and critical science practices in the late 1990s (bureaud; malina; whiteley, 2014). This movement merged in recent years with other movements coming from professional scientists advocating eScience, Open Science, Open Access and Open Data (neylon; wu, 2009; molloy, 2011; uhlir; schröder, 2007). The calls for changing the publishing model and opening the datasets while supporting online collaboration and crowdsourcing are starting to merge with attempts to reduce the cost of experimental research and increase reproducibility by building low cost customizable laboratory equipment (pearce, 2014; landrain et al. 2013). This convergence of hackerspace and makerspace OSHW interests with open science goals (open data, open access, online collaboration) created some unique opportunities to involve 134 Denisa Kera citizen scientists, but also scientists from the developing countries in alternative global research networks (kera, 2012A; kera, 2013). In this paper we want to reflect upon the critical role of open hardware in forming these unique South to South and South to North networks and research cooperation. We will analyse the issue as a form of “geek diplomacy” over open science. Geek diplomacy is a citizen, grassroots involvement in science which bridges various knowledge and infrastructural divides to create a more inclusive R&D response to challenging international political, social and scientific issues. -
Another Reason for Opening Access to Research
Downloaded from bmj.com on 16 February 2007 Another reason for opening access to research John Wilbanks BMJ 2006;333;1306-1308 doi:10.1136/sbmj.39063.730660.F7 Updated information and services can be found at: http://bmj.com/cgi/content/full/333/7582/1306 These include: Rapid responses 3 rapid responses have been posted to this article, which you can access for free at: http://bmj.com/cgi/content/full/333/7582/1306#responses You can respond to this article at: http://bmj.com/cgi/eletter-submit/333/7582/1306 Email alerting Receive free email alerts when new articles cite this article - sign up in the service box at the top left of the article Notes To order reprints follow the "Request Permissions" link in the navigation box To subscribe to BMJ go to: http://resources.bmj.com/bmj/subscribers Downloaded from bmj.com on 16 February 2007 Inspiration Another reason for opening access to research John Wilbanks Science Commons Much of the debate about open access has focused on Project, Creative Commons, c/o the principle of access for scientists and the economics Massachusetts of such a change. There is a second principle to Institute of consider: the full power of new technological Technology Computer Science approaches such as text mining, collaborative filtering, and Artificial and semantic indexing, are not resulting in powerful Intelligence new public resources. Despite real success in the open Laboratory, Cambridge, MA access movement, most scholarly research is unavailable, 02127, USA either for study or for processing by software. wilbanks@ creativecommons.org According to the Budapest open access initiative, John Wilbanks “There are many degrees and kinds of wider and easier executive director access to this literature. -
Tweets from the Trans-NIH Workshop to Explore the Ethical, Legal And
Trans-NIH Workshop to Explore the Ethical, Legal and Social Implications (ELSI) of Citizen Science #CitSciELSI Tweets January 13-14, 2015 Date Screen Name User Name Tweet Text 1/16/2015 4:13:30 @NCIPhySci NCI PhysicalSciences The #CitSciELSI workshop has been storified! http://t.co/6CHPksBUkU via @storify RT @CCPHconference: Hope you'll continue the #CitSciELSI conversation in #Canada this spring! @cuexpo 1/16/2015 2:57:48 @CUEUVic CUE UVic http://t.co/TRgq3ioHYg #CBPR #engaged… MT @CitSciAssoc: Concerned about #publichealth? Check out these #citizenscience sessions at #CitSci2015 1/15/2015 23:07:56 @CCPH2010 CCPH http://t.co/Z9wxqjcHoB #CitSciELSI Concerned about #publichealth? Sessions about role of #citizenscience in #communityhealth at #CitSci2015 1/15/2015 22:30:14 @CitSciAssoc CitSciAssoc http://t.co/pasVrGCIFX #CitSciELSI RT @engagedethics: Let's keep sharing #CitSciELSI resources, like this blogspot (thanks @CoopSciScoop for 1/15/2015 20:39:44 @JackieJCreedon Jackie James-Creedon workshop tweets). http://t.co/avD… RT @engagedethics: Let's keep sharing #CitSciELSI resources, like this blogspot (thanks @CoopSciScoop for 1/15/2015 19:08:51 @CoopSciScoop Caren Cooper workshop tweets). http://t.co/avD… RT @HealthcareWen: Jan13-4 webcast: Ethical-Legal-Social Implications of CITIZEN SCIENCE 1/15/2015 18:52:49 @AlisynGayle Alisyn Gayle http://t.co/nils5MhgJ5 #CitSciELSI @genome_gov @ST… RT @CCPH2010: Ah ha! There IS a Journal of Negative Results! http://t.co/kjBXTUCfHx @AndreaWiggins 1/15/2015 12:23:30 @KTAustralia Tamika Heiden #CitSciELSI #research RT @CitSciAssoc: Re-imagining #CitizenScience: Knowledge for #equality? New #citsci2015 blog post! 1/15/2015 9:42:13 @nmdammann Nancy M.