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Paleobiogeography of Miocene to Pliocene Equinae of North America: a Phylogenetic
Paleobiogeography of Miocene to Pliocene Equinae of North America: A Phylogenetic Biogeographic and Niche Modeling Approach A thesis presented to the faculty of the College of Arts and Sciences of Ohio University In partial fulfillment of the requirements for the degree Master of Science Kaitlin Clare Maguire June 2008 2 This thesis titled Paleobiogeography of Miocene to Pliocene Equinae of North America: A Phylogenetic Biogeographic and Niche Modeling Approach by KAITLIN CLARE MAGUIRE has been approved for the Department of Geological Sciences and the College of Arts and Sciences by Alycia L. Stigall Assistant Professor of Geological Sciences Benjamin M. Ogles Dean, College of Arts and Sciences 3 ABSTRACT MAGUIRE, KAITLIN CLARE, M.S., June 2008, Geological Sciences Paleobiogeography of Miocene to Pliocene Equinae of North America: A Phylogenetic Biogeographic and Niche Modeling Approach (195 pp.) Director of Thesis: Alycia L. Stigall The biogeography and evolution of the subfamily Equinae is examined using two separate but related analyses, phylogenetic biogeography and ecological niche modeling. The evolution of Equinae is a classic example of an adaptive radiation during a time of environmental change. Both analyses employed here examine the biogeography of the equine species to interpret how environmental and historical variables led to the rise and fall of this clade. Results determine climate change is the primary factor driving the radiation of Equinae and geodispersal is the dominant mode of speciation between regions of North America. A case study in the Great Plains indicates distributional patterns are more patchy during the middle Miocene when speciation rates are high than in the late Miocene, when the clade is in decline. -
History and Geography of Neotropical Tree Diversity
ES50CH13_Dick ARjats.cls October 21, 2019 12:57 Annual Review of Ecology, Evolution, and Systematics History and Geography of Neotropical Tree Diversity Christopher W. Dick1,2 and R. Toby Pennington3,4 1Department of Ecology and Evolutionary Biology and Herbarium, University of Michigan, Ann Arbor, Michigan 48109, USA; email: [email protected] 2Smithsonian Tropical Research Institute, Balboa, Ancon, Panama 3Department of Geography, University of Exeter, Exeter EX4 4QE, United Kingdom; email: [email protected] 4Royal Botanic Garden Edinburgh, Edinburgh EH3 5LR, United Kingdom Annu. Rev. Ecol. Evol. Syst. 2019. 50:279–301 Keywords First published as a Review in Advance on tropical forest, savanna, Great American Biotic Interchange, GABI, August 12, 2019 Pleistocene refuge theory, PRT, long-distance dispersal, LDD, community The Annual Review of Ecology, Evolution, and assembly Systematics is online at ecolsys.annualreviews.org https://doi.org/10.1146/annurev-ecolsys-110617- Abstract 062314 Early botanical explorers invoked biogeographic history to explain the re- Access provided by CASA Institution Identity on 11/06/19. For personal use only. Copyright © 2019 by Annual Reviews. markable tree diversity of Neotropical forests. In this context, we review the Annu. Rev. Ecol. Evol. Syst. 2019.50:279-301. Downloaded from www.annualreviews.org All rights reserved history of Neotropical tree diversity over the past 100 million years, focusing on biomes with significant tree diversity. We evaluate hypotheses for rain forest origins, intercontinental disjunctions, and models of Neotropical tree diversification. To assess the impact of biotic interchange on the Amazon tree flora, we examined biogeographic histories of trees in Ecuador’s Yasuní Forest, which suggest that nearly 50% of its species descend from immigrant lineages that colonized South America during the Cenozoic. -
Distance Dispersal in the Custard Apple Family (Annonaceae)?
Received: 17 September 2018 | Revised: 28 January 2019 | Accepted: 16 February 2019 DOI: 10.1111/jbi.13552 SPECIAL ISSUE Which frugivory- related traits facilitated historical long- distance dispersal in the custard apple family (Annonaceae)? Renske E. Onstein1,2 | W. Daniel Kissling3 | Lars W. Chatrou4 | Thomas L. P. Couvreur5 | Hélène Morlon6 | Hervé Sauquet1,7 1Ecologie Systématique Evolution, AgroParisTech, University of Paris-Sud, Abstract CNRS, Orsay, France Aim: Long- distance dispersal has contributed to the disjunct biogeographical distri- 2 German Centre for Integrative Biodiversity bution of rain forest plants—something that has fascinated biogeographers since Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany Humboldt's time. However, the dispersal agent for these tropical plant lineages re- 3Institute for Biodiversity and Ecosystem mains puzzling. Here, we investigate which frugivory- related traits may have facili- Dynamics (IBED), University of Amsterdam, Amsterdam, The Netherlands tated past intercontinental long- distance dispersal in the custard apple family 4Systematic and Evolutionary Botany (Annonaceae), a major vertebrate- dispersed tropical plant family. We hypothesize lab, Ghent University, Ghent, Belgium that long- distance dispersal was associated with the evolution of traits related to 5IRD, DIADE, University of Montpellier, dispersal by large- bodied mammals (e.g., large, dull- coloured, “megafaunal” fruits) Montpellier, France 6Institut de Biologie, École Normale and strong- flying, ocean- crossing birds and bats (e.g., dehiscent, moniliform or cauli- Supérieure, Paris, France florous fruits). 7 National Herbarium of New South Wales Location: Global. (NSW), Royal Botanic Gardens and Domain Trust, Sydney, NSW, Australia Taxon: Annonaceae. Methods: We used a fossil- calibrated phylogenetic framework to infer the biogeo- Correspondence Renske E. -
Paleobiogeography of Miocene Equinae of North America: a Phylogenetic Biogeographic Analysis of the Relative Roles of Climate, Vicariance, and Dispersal
Palaeogeography, Palaeoclimatology, Palaeoecology 267 (2008) 175–184 Contents lists available at ScienceDirect Palaeogeography, Palaeoclimatology, Palaeoecology journal homepage: www.elsevier.com/locate/palaeo Paleobiogeography of Miocene Equinae of North America: A phylogenetic biogeographic analysis of the relative roles of climate, vicariance, and dispersal Kaitlin Clare Maguire a,⁎, Alycia L. Stigall b a Department of Geological Sciences, Ohio University, 316 Clippinger Laboratories, Athens, OH 45701, United States b Department of Geological Sciences and OHIO Center for Ecology and Evolutionary Studies, Ohio University, 316 Clippinger Laboratories, Athens, OH 45701, United States ARTICLE INFO ABSTRACT Article history: The horse subfamily Equinae underwent a major radiation during the Miocene in North America, diversifying Received 16 November 2007 from one species, Parahippus leonensis, to 70 species. This radiation has been linked to climatic and Received in revised form 19 May 2008 vegetation changes that occurred in North America during this time. However, the relationship between Accepted 18 June 2008 climate change and speciation has not previously been studied quantitatively using phylogenetic biogeography. Distribution and age-range data were collected for all North American species within Keywords: eighteen equine genera through a literature review and use of the Paleobiology Database. Fitch parsimony Radiation Geodispersal analysis of the taxon-area cladogram indicate that speciation by dispersal (Allopatry model II) was more Great Plains Grassland common in the evolution of the clade than speciation by vicariance (Allopatry model I). Distribution data Neogene were analyzed using the Lieberman-modified Brooks Parsimony Analysis (LBPA) to determine patterns of Climate Change vicariance and geodispersal, using four constrained biogeographic regions within North America in the analysis: the Great Plains, the Southwest, the Gulf Coast and the Southeast. -
Historical Biogeography: Evolution in Time and Space
Evo Edu Outreach (2012) 5:555–568 DOI 10.1007/s12052-012-0421-2 GEOGRAPHY AND EVOLUTION Historical Biogeography: Evolution in Time and Space Isabel Sanmartín Published online: 21 June 2012 # Springer Science+Business Media, LLC 2012 Abstract Biogeography is the discipline of biology that Introduction studies the present and past distribution patterns of biolog- ical diversity and their underlying environmental and his- Thanks to advances such as better exploration techniques, torical causes. For most of its history, biogeography has satellite cartography, or the use of geographic information been divided into proponents of vicariance explanations, systems (GIS), global patterns of biodiversity distribution who defend that distribution patterns can mainly be are now fairly well understood. Conversely, the causal fac- explained by geological, tectonic-isolating events; and dis- tors and processes underlying such patterns are still debated. persalists, who argue that current distribution patterns are Biogeography is the discipline of biology that attempts to largely the result of recent migration events. This paper reconstruct the patterns of distribution of biological diversi- provides an overview of the evolution of the discipline from ty and to identify the processes that have shaped those methods focused on finding general patterns of distribution distributions over time. Why are organisms distributed (cladistic biogeography), to those that integrate biogeo- where they are today? How have faunas and floras assem- graphic processes (event-based -
Not So Fast a New Take on the Great American Biotic Interchange
EIGHTEEN Not So Fast A New Take on the Great American Biotic Interchange PROSANTA CHAKRABARTY and JAMES S. ALBERT The completion of the Middle American land bridge resulted in some limited interchange of freshwater fishes. Again, the predominant direction of dispersal was from south to north. LOMOLINO ET AL. 2006, 379 14 The prevailing biological view of the closure of the Isthmus into two historical assemblages: members of an “Old South- of Panama is of a dominant South American fauna rapidly ern Element” (a Paleoichthyofauna) of Cretaceous or Paleo- expanding northward via the newly formed land bridge cene origins (including Hyphessobrycon, Gymnotus, Rhamdia, between the continents (Stehli and Webb 1985; Bermingham ‘Cichlasoma,’ Phallichthys, Alfaro, Rivulus) and a Neoichthyo- 15 and Martin 1998; Lomolino et al. 2006). The current diversity fauna of Plio-Pleistocene origins (including Astyanax, Brycon, of Central American and tropical North American (together Roeboides, Hypostomus, Trichomycterus, Brachyhypopomus, Apter- Middle American) freshwater fish lineages is largely explained onotus, Aequidens, Geophagus, Synbranchus). Under this view, to be the result of explosive radiations that were facilitated the current diversity of Central American fishes is the result by the invasion of South American fishes into new and unoc- of multiple temporally distinct waves of South American inva- cupied habitats on and across the isthmus. To the contrary, sions. Members of the Paleoichthyofauna may be regarded as we present data that suggest that the Isthmus acted as a “two- the ecosystem incumbents (sensu Vermeij and Dudley 2000), way street,” with an asymmetry favoring a dominant Central which were resistant to being displaced by potential invaders American freshwater fish fauna moving south. -
The Historical Origins of Palaeotropical Intercontinental Disjunctions in The
Perspectives in Plant Ecology, Evolution and Systematics 17 (2015) 1–16 Contents lists available at ScienceDirect Perspectives in Plant Ecology, Evolution and Systematics jo urnal homepage: www.elsevier.com/locate/ppees Research article The historical origins of palaeotropical intercontinental disjunctions in the pantropical flowering plant family Annonaceae a,b,c, d e f Daniel C. Thomas ∗, Lars W. Chatrou , Gregory W. Stull , David M. Johnson , g h b, David J. Harris , U-sa Thongpairoj , Richard M.K. Saunders ∗∗ a Naturalis Biodiversity Center, Darwinweg 4, Leiden, P.O. Box 9517, 2300 RA Leiden, The Netherlands b The University of Hong Kong, School of Biological Sciences, Pokfulam Road, Hong Kong, China c Singapore Botanic Gardens, 1 Cluny Road, Singapore 259569, Singapore d Wageningen University, Biosystematics Group, NL-6708 PB Wageningen, The Netherlands e University of Florida, Department of Biology, Gainesville, FL 32611, USA f Ohio Wesleyan University, Department of Botany and Microbiology, Delaware, OH 43015, USA g Royal Botanic Garden Edinburgh, Edinburgh EH3 5LR, Scotland, UK h Mahasarakham University, Department of Biology, Khamriang Subdistrict, Kantarawichai District, Maha Sarakham 44150, Thailand a r t i c l e i n f o a b s t r a c t Article history: Geographic isolation of sister taxa in the African and Asian tropics (palaeotropical intercontinental dis- Received 4 April 2014 junction; PID) is a major biogeographic pattern explained by four competing hypotheses: rafting on Received in revised form 30 October 2014 the Indian tectonic plate (‘Gondwanan vicariance hypothesis’); migration facilitated by a northern mid- Accepted 3 November 2014 latitude corridor of frost-free climates during the Eocene (‘boreotropical migration hypothesis’); overland Available online 10 November 2014 dispersal across Arabia associated with the Miocene Climatic Optimum; and transoceanic dispersal. -
Paleobiogeography Topics in Geobiology Series Editor: Neil H
Paleobiogeography Topics in Geobiology Series Editor: Neil H. Landman, American Museum of Natural History, New York, New York Douglas S. Jones, University of Horida, Gainesville, Florida Current volumes in this series Volume 4 THE GREAT AMERICAN BIOTIC INTERCHANGE Edited by Francis G. Stehli and S. David Webb Volume 5 MAGNETTE BIOMINERALIZATION AND MAGNETORECEPTION IN ORGANISMS A New Biomagnetism Edited by Joseph L. Kirschvink, Douglas S. Jones and Bruce J. McFadden Volume 6 NAUTILUS The Biology and Paleobiology of a Living Fossil Edited by W. Bruce Saunders and Neil H. Landman Volume 7 HETEROCHRONY IN EVOLUTION A Multidisciplinary Approach Edited by Michael L. McKinney Volume 8 GALApAGOS MARINE INVERTEBRATES Taxonomy, Biogeography and Evolution in Darwin's Islands Edited by Matthew 1. James Volume 9 TAPHONOMY Releasing the Data Locked in the Fossil Record Edited by Peter A. Allison and Derek E. G. Briggs Volume 10 ORIGIN AND EARLY EVOLUTION OF THE METAZOA Edited by Jere H. Lipps and Philip W. Signor Volume II ORGANIC GEOCHEMISTRY Principles and Applications Edited by Michael H. Engel and Stephen A. Macko Volume 12 THE TERTIARY RECORD OF RODENTS IN NORTH AMERICA William Korth Volume 13 AMMONOID PALEOBIOGRAPHY Edited by Neil H. Landman, Kazushige Tanabe and Richard Arnold Davis Volume 14 NEOGENE PALEONTOLOGY OF THE MANONGA VALLEY, TANZANIA A Window into the Evolutionary History of East Africa Edited by Terry Harrison Volume IS ENVIRONMENTAL MICROPALEONTOLOGY Edited by Ronald E. Martin Volume 16 PALEOBIOGEOGRAPHY Bruce S. Lieberman Paleobiogeography Bruce S. Lieberman University 0/ Kansas Lawrence. Kansas Springer Science+Business Media, LLC Library of Congress Cataloging-in-Publication Data Liebennan, Bruce S. -
Paleobiogeographic Analyses of Late Ordovician Faunal Migrations: Assessing Regional
Paleobiogeographic Analyses of Late Ordovician Faunal Migrations: Assessing Regional and Continental Pathways and Mechanisms A thesis presented to the faculty of the College of Arts and Sciences of Ohio University In partial fulfillment of the requirements for the degree Master of Science Adriane R. Lam May 2015 © 2015 Adriane R. Lam. All Rights Reserved. 2 This thesis titled Paleobiogeographic Analyses of Late Ordovician Faunal Migrations: Assessing Regional and Continental Pathways and Mechanisms by ADRIANE R. LAM has been approved for the Department of Geological Sciences and the College of Arts and Sciences by Alycia L. Stigall Associate Professor of Geological Sciences Robert Frank Dean, College of Arts and Sciences 3 ABSTRACT LAM, ADRIANE R., M.S., May 2015, Geological Sciences Paleobiogeographic Analyses of Late Ordovician Faunal Migrations: Assessing Regional and Continental Pathways and Mechanisms Director ofThesis: Alycia L. Stigall Late Ordovician strata of the Cincinnati Basin record an invasion during the Richmondian Age. Competing hypotheses exist in the literature about the origin and dispersal routes used by the invasive taxa. In this thesis, a suite of traditional and novel paleobiogeographic methods are used to (1) identify geographic source regions for the invasive taxa, (2) reconstruct dispersal paths used, and (3) analyze speciation patterns that influenced biogeographic evolution of taxa. Parsimony Analysis of Endemicity (PAE) applied to over 60 genera that participated in the invasion interval for the C1-C5 depositional sequences supported multiple dispersal routes within Laurentia and between Laurentia and Baltica. Larval type for invasive taxa was dominantly planktotrophic or planula larvae; both have high dispersal potential. Phylogenetic biogeographic analyses using parsimony and model-based approaches were applied to ten clades of Middle-Late Ordovician taxa to compare ancestral range reconstructions characterized speciation type and identify dispersal paths. -
Integrating, Developing, and Testing Methods to Generate More Cohesive Approaches to Biogeographic Inference
UNLV Theses, Dissertations, Professional Papers, and Capstones 5-1-2013 Integrating, Developing, and Testing Methods to Generate More Cohesive Approaches to Biogeographic Inference Mallory Elizabeth Eckstut University of Nevada, Las Vegas Follow this and additional works at: https://digitalscholarship.unlv.edu/thesesdissertations Part of the Biodiversity Commons, Climate Commons, Desert Ecology Commons, Geography Commons, and the Zoology Commons Repository Citation Eckstut, Mallory Elizabeth, "Integrating, Developing, and Testing Methods to Generate More Cohesive Approaches to Biogeographic Inference" (2013). UNLV Theses, Dissertations, Professional Papers, and Capstones. 1821. http://dx.doi.org/10.34917/4478231 This Dissertation is protected by copyright and/or related rights. It has been brought to you by Digital Scholarship@UNLV with permission from the rights-holder(s). You are free to use this Dissertation in any way that is permitted by the copyright and related rights legislation that applies to your use. For other uses you need to obtain permission from the rights-holder(s) directly, unless additional rights are indicated by a Creative Commons license in the record and/or on the work itself. This Dissertation has been accepted for inclusion in UNLV Theses, Dissertations, Professional Papers, and Capstones by an authorized administrator of Digital Scholarship@UNLV. For more information, please contact [email protected]. INTEGRATING, DEVELOPING, AND TESTING METHODS TO GENERATE MORE COHESIVE APPROACHES TO BIOGEOGRAPHIC INFERENCE -
Fish Biodiversity and Conservation in South America
Journal of Fish Biology (2016) 89, 12–47 doi:10.1111/jfb.13016, available online at wileyonlinelibrary.com Fish biodiversity and conservation in South America R. E. Reis*†, J. S. Albert‡, F. Di Dario§, M. M. Mincarone§, P. Petry‖ and L. A. Rocha¶ *PUCRS, Laboratory of Vertebrate Systematics, Av. Ipiranga, 6681, 90619-900 Porto Alegre, Brazil, ‡University of Louisiana at Lafayette, Lafayette, LA 70504-2451, U.S.A., §Universidade Federal do Rio de Janeiro (UFRJ), Núcleo em Ecologia e Desenvolvimento Socioambiental de Macaé (NUPEM), Grupo de Sistemática e Biologia Evolutiva, Caixa Postal 119331, 27910-970, Macaé, RJ, Brazil, ‖Museum of Comparative Zoology, Harvard University, 26 Oxford St Cambridge, MA, 02138, U.S.A. and ¶Section of Ichthyology, California Academy of Sciences, 55 Music Concourse Dr, San Francisco, CA 94118, U.S.A. The freshwater and marine fish faunas of South America are the most diverse on Earth, with current species richness estimates standing above 9100 species. In addition, over the last decade at least 100 species were described every year. There are currently about 5160 freshwater fish species, and the estimate for the freshwater fish fauna alone points to a final diversity between 8000 and 9000 species. South America also has c. 4000 species of marine fishes. The mega-diverse fish faunas of South Amer- ica evolved over a period of >100 million years, with most lineages tracing origins to Gondwana and the adjacent Tethys Sea. This high diversity was in part maintained by escaping the mass extinctions and biotic turnovers associated with Cenozoic climate cooling, the formation of boreal and temperate zones at high latitudes and aridification in many places at equatorial latitudes.