Exposing Toxoplasma Gondii Hiding Inside the Vacuole: a Role for Gbps, Autophagy and Host Cell Death
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Guanine Nucleotidebinding Protein 1 Is One of the Key Molecules
Guanine nucleotide-binding protein 1 is one of the key molecules contributing to cancer cell radioresistance Motoi Fukumoto,1 Tatsuya Amanuma,1 Yoshikazu Kuwahara,1 Tsutomu Shimura,1 Masatoshi Suzuki,1 Shiro Mori,2 Hiroyuki Kumamoto,3 Yohei Saito,4 Yasuhito Ohkubo,4 Zhenfeng Duan,5 Kenji Sano,6 Tomohiro Oguchi,7 Kazuyuki Kainuma,7 Shinichi Usami,7 Kengo Kinoshita,8 Inchul Lee9 and Manabu Fukumoto1 1Department of Pathology, Institute of Development, Aging and Cancer, Tohoku University, Sendai; 2Department of Oral and Maxillofacial Surgery, Tohoku University, Sendai; 3Division of Oral Pathology, Department of Oral Medicine and Surgery, Graduate School of Dentistry, Tohoku University, Sendai; 4Department of Radiopharmacy, Tohoku Pharmaceutical University, Sendai, Japan; 5Department of Hematology/Oncology, Massachusetts General Hospital, Boston, Massachusetts, USA; 6Department of Pathology, School of Medicine, Shinshu University, Matsumoto; 7Department of Otorhinolaryngology, School of Medicine, Shinshu University, Matsumoto, Japan; 8Graduate School of Information Sciences, Tohoku University, Sendai; 9Department of Pathology, Asan Medical Center, Seoul, Korea Key words Standard fractionated radiotherapy for the treatment of cancer consists of daily GTP-binding proteins, head and neck neoplasms, irradiation of 2-Gy X-rays, 5 days a week for 5–8 weeks. To understand the char- neoplasms, radiation, radiation oncology acteristics of radioresistant cancer cells and to develop more effective radiother- Correspondence apy, we established a series of novel, clinically relevant radioresistant (CRR) cells Manabu Fukumoto, Department of Pathology, IDAC, that continue to proliferate with 2-Gy X-ray exposure every 24 h for more than Tohoku University, 4-1 Seiryou-machi, Aoba-ku, Sendai, 30 days in vitro. We studied three human and one murine cell line, and their CRR Japan. -
Autophagy: from Basic Science to Clinical Application
nature publishing group REVIEW See COMMENTARY page XX Autophagy: from basic science to clinical application J Va n L i m b e r g e n 1 , 2 , 3 , C S t e v e n s 4 , E R N i m m o 1 , D C W i l s o n 2 , 3 a n d J S a t s a n g i 1 Autophagy is a cellular pathway involved in protein and organelle degradation, which is likely to represent an innate adaptation to starvation. In times of nutrient deficiency, the cell can self-digest and recycle some nonessential components through nonselective autophagy, thus sustaining minimal growth requirements until a food source becomes available. Over recent years, autophagy has been implicated in an increasing number of clinical scenarios, notably infectious diseases, cancer, neurodegenerative diseases, and autoimmunity. The recent identification of the importance of autophagy genes in the genetic susceptibility to Crohn ’ s disease suggests that a selective autophagic response may play a crucial role in the pathogenesis of common complex immune-mediated diseases. In this review, we discuss the autophagic mechanisms, their molecular regulation, and summarize their clinical relevance. This progress has led to great interest in the therapeutic potential of manipulation of both selective and nonselective autophagy in established disease. INTRODUCTION The ability to adapt to environmental change is essential for sur- Autophagy encompasses several distinct processes involving vival. This is true for the organism as a whole and for individual the delivery of portions of the cytoplasm to the lysosome for cells alike. -
Duke University Dissertation Template
The Role of Irgm1 in Mitochondrial Dynamics and Metabolism by Elyse Schmidt Department of Molecular Genetics and Microbiology Duke University Date:_______________________ Approved: ___________________________ Gregory Taylor, Supervisor ___________________________ Jörn Coers ___________________________ Tso-Pang Yao ___________________________ Nancie MacIver ___________________________ David Pickup Dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Molecular Genetics and Microbiology in the Graduate School of Duke University 2017 i v ABSTRACT The Role of Irgm1 in Mitochondrial Dynamics and Metabolism by Elyse Schmidt Department of Molecular Genetics and Microbiology Duke University Date:_______________________ Approved: ___________________________ Gregory Taylor, Supervisor ___________________________ Jörn Coers ___________________________ Tso-Pang Yao ___________________________ Nancie MacIver ___________________________ David Pickup An abstract of a dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Molecular Genetics and Microbiology in the Graduate School of Duke University 2017 i v Copyright by Elyse Schmidt 2017 Abstract The Immunity-Related GTPases (IRG) are a family of proteins that are induced by interferon (IFN)-γ and play pivotal roles in immune and inflammatory responses. IRGs ostensibly function as dynamin-like proteins that bind to intracellular membranes, and promote remodeling and trafficking of those membranes. Prior studies have shown that loss of Irgm1 in mice leads to increased lethality to bacterial infections, as well as enhanced inflammation to non-infectious stimuli; however, the mechanisms underlying these phenotypes are unclear. In this dissertation, I studied the role of Irgm1 in mitochondrial biology and immunometabolism. Past studies of Irgm1’s human orthologue, IRGM, reported that IRGM localized to mitochondria and induced mitochondrial fragmentation. -
Contributes to Cell-Autonomous Immunity Against Toxoplasma Gondii Elizabeth M
Washington University School of Medicine Digital Commons@Becker Open Access Publications 2013 Guanylate-binding protein 1 (Gbp1) contributes to cell-autonomous immunity against Toxoplasma gondii Elizabeth M. Selleck Washington University School of Medicine in St. Louis Sarah J. Fentress Washington University School of Medicine in St. Louis Wandy L. Beatty Washington University School of Medicine in St. Louis Daniel Degrandi Heinrich-Heine-Universitat Dusseldorf Klaus Pfeffer Heinrich-Heine-Universitat Dusseldorf See next page for additional authors Follow this and additional works at: https://digitalcommons.wustl.edu/open_access_pubs Recommended Citation Selleck, Elizabeth M.; Fentress, Sarah J.; Beatty, Wandy L.; Degrandi, Daniel; Pfeffer, Klaus; Virgin, Herbert W. IV; MacMicking, John D.; and Sibley, L. David, ,"Guanylate-binding protein 1 (Gbp1) contributes to cell-autonomous immunity against Toxoplasma gondii." PLoS Pathogens.,. e1003320. (2013). https://digitalcommons.wustl.edu/open_access_pubs/1496 This Open Access Publication is brought to you for free and open access by Digital Commons@Becker. It has been accepted for inclusion in Open Access Publications by an authorized administrator of Digital Commons@Becker. For more information, please contact [email protected]. Authors Elizabeth M. Selleck, Sarah J. Fentress, Wandy L. Beatty, Daniel Degrandi, Klaus Pfeffer, Herbert W. Virgin IV, John D. MacMicking, and L. David Sibley This open access publication is available at Digital Commons@Becker: https://digitalcommons.wustl.edu/open_access_pubs/1496 Guanylate-binding Protein 1 (Gbp1) Contributes to Cell- autonomous Immunity against Toxoplasma gondii Elizabeth M. Selleck1, Sarah J. Fentress1, Wandy L. Beatty1, Daniel Degrandi2, Klaus Pfeffer2, Herbert W. Virgin IV3, John D. MacMicking4, L. David Sibley1* 1 Department of Molecular Microbiology, Washington University School of Medicine, St. -
Discovery of a Small Molecule TUBB3/Βiii-Tubulin Modulator in Lung Cancer
Discovery of a small molecule TUBB3/βIII-tubulin modulator in lung cancer Felicity Chao Lin Kao A thesis submitted in fulfilment of the requirements for the degree of Doctor of Philosophy School of Women’s and Children’s Health Faculty of Medicine The University of New South Wales March 2016 TH E UNIVERSITY OF NEW SOUTH WALES Thesis/Dissertation Sheet Surname or Family name: Kao First name: Felicity Other name/s: Chao Lin Abbreviation for degree as g iven in the University calendar: PhD School: School of Women's and Children's Health Faculty: Faculty of Medicine Title: Discovery of a small molecule TU883/I311 1·tubulin modulator in lung cancer Abstract Non-small Cell Lung Cancer (NSCLC) survival rates are dismal and chemotherapy resistance is a significant clinical problem. 13111-tubulin (encoded by TUBB3 gene) is aberranlly expressed and is associated with chemoresistance and tumour aggressiveness in NSCLC, where it has been identified as a bona fide target for chemosensitisation. Currently, there is no commercially available TUB83J13111-tubulin inhibitor. Regulation of 13111 -tubulin is poorly understood, making it difficult to target this protein. We sought to identify a chemical modulator of TU883J1311Hubulin expression, as it will be a valuable research tool to probe TU883J!3111-tubulin regulation . A novel small molecule TU883/13111-tubulin enhancer, WECC0017371 , was identified in our high throughput screen, based on its ability to modulate TUBB3 promoter activity. WECC001 7371 demonstrated the ability to significantly enhance TUBB3 mRNA and 13111-tubulin protein expression in a time· and dose-dependent manner. Additionally, WECC0017371 did not alter microtubule morphology but enhanced 13111-tubuli n immunostaining in two independent NSCLC cell lines, H460 and H1299, compared to control. -
Detection and Manipulation of Live Antigen-Expressing Cells Using
1 Title: Detection and manipulation of live antigen-expressing cells using 2 conditionally stable nanobodies 3 4 Authors: Jonathan C.Y. Tang1,2†, Eugene Drokhlyansky1,2†, Behzad Etemad3, 5 Stephanie Rudolph4, Binggege Guo1,2, Sui Wang1,2, Emily G, Ellis4, Jonathan Z. Li3, 6 Constance L. Cepko1,2* 7 8 Affiliations: 9 1Howard Hughes Medical Institute 10 2Departments of Genetics and Ophthalmology 11 Harvard Medical School, Boston, MA 02115, USA 12 3Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA 13 4Department of Neurobiology 14 Harvard Medical School, Boston, MA 02115, USA 15 16 †These authors contributed equally to this work 17 *Corresponding author: [email protected] 18 19 Competing Interests: 20 J.C.Y.T, E.D., S.W. and C.L.C. have submitted a U.S. patent application regarding 21 destabilized nanobodies: International Application No. PCT/US2016/027749. Priority: 22 US Prov. Appl. No. 62/148,595. 23 24 25 26 Abstract: The ability to detect and/or manipulate specific cell populations based upon 27 the presence of intracellular protein epitopes would enable many types of studies and 28 applications. Protein binders such as nanobodies (Nbs) can target untagged proteins 29 (antigens) in the intracellular environment. However, genetically expressed protein 30 binders are stable regardless of antigen expression, complicating their use for 31 applications that require cell-specificity. Here, we created a conditional system in which 32 the stability of an Nb depends upon an antigen of interest. We identified Nb framework 33 mutations that can be used to rapidly create destabilized Nbs. -
Microarray Analysis of Novel Genes Involved in HSV- 2 Infection
Microarray analysis of novel genes involved in HSV- 2 infection Hao Zhang Nanjing University of Chinese Medicine Tao Liu ( [email protected] ) Nanjing University of Chinese Medicine https://orcid.org/0000-0002-7654-2995 Research Article Keywords: HSV-2 infection,Microarray analysis,Histospecic gene expression Posted Date: May 12th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-517057/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/19 Abstract Background: Herpes simplex virus type 2 infects the body and becomes an incurable and recurring disease. The pathogenesis of HSV-2 infection is not completely clear. Methods: We analyze the GSE18527 dataset in the GEO database in this paper to obtain distinctively displayed genes(DDGs)in the total sequential RNA of the biopsies of normal and lesioned skin groups, healed skin and lesioned skin groups of genital herpes patients, respectively.The related data of 3 cases of normal skin group, 4 cases of lesioned group and 6 cases of healed group were analyzed.The histospecic gene analysis , functional enrichment and protein interaction network analysis of the differential genes were also performed, and the critical components were selected. Results: 40 up-regulated genes and 43 down-regulated genes were isolated by differential performance assay. Histospecic gene analysis of DDGs suggested that the most abundant system for gene expression was the skin, immune system and the nervous system.Through the construction of core gene combinations, protein interaction network analysis and selection of histospecic distribution genes, 17 associated genes were selected CXCL10,MX1,ISG15,IFIT1,IFIT3,IFIT2,OASL,ISG20,RSAD2,GBP1,IFI44L,DDX58,USP18,CXCL11,GBP5,GBP4 and CXCL9.The above genes are mainly located in the skin, immune system, nervous system and reproductive system. -
Download Validation Data
PrimePCR™Assay Validation Report Gene Information Gene Name guanylate binding protein 1, interferon-inducible Gene Symbol GBP1 Organism Human Gene Summary Guanylate binding protein expression is induced by interferon. Guanylate binding proteins are characterized by their ability to specifically bind guanine nucleotides (GMP GDP and GTP) and are distinguished from the GTP-binding proteins by the presence of 2 binding motifs rather than 3. Gene Aliases Not Available RefSeq Accession No. NC_000001.10, NT_032977.9 UniGene ID Hs.62661 Ensembl Gene ID ENSG00000117228 Entrez Gene ID 2633 Assay Information Unique Assay ID qHsaCED0002187 Assay Type SYBR® Green Detected Coding Transcript(s) ENST00000370473 Amplicon Context Sequence AATAAACTTCTCCTGAGTGGTACCAGCTTATGAGATTTCCTGAGTTGATACAGAG GTAAATGCATCTTTGTTGCACAATTTACAGTCTTTTTTTTTTTTTAAGAAAAAACAT GATTTTGATCATTGTACCACATGCCTTTATAAACTTTTGGTG Amplicon Length (bp) 124 Chromosome Location 1:89518779-89518932 Assay Design Exonic Purification Desalted Validation Results Efficiency (%) 96 R2 0.9999 cDNA Cq 22.48 cDNA Tm (Celsius) 77.5 gDNA Cq 23.04 Page 1/5 PrimePCR™Assay Validation Report Specificity (%) 100 Information to assist with data interpretation is provided at the end of this report. Page 2/5 PrimePCR™Assay Validation Report GBP1, Human Amplification Plot Amplification of cDNA generated from 25 ng of universal reference RNA Melt Peak Melt curve analysis of above amplification Standard Curve Standard curve generated using 20 million copies of template diluted 10-fold to 20 copies Page 3/5 PrimePCR™Assay Validation Report Products used to generate validation data Real-Time PCR Instrument CFX384 Real-Time PCR Detection System Reverse Transcription Reagent iScript™ Advanced cDNA Synthesis Kit for RT-qPCR Real-Time PCR Supermix SsoAdvanced™ SYBR® Green Supermix Experimental Sample qPCR Human Reference Total RNA Data Interpretation Unique Assay ID This is a unique identifier that can be used to identify the assay in the literature and online. -
Chapter 9 a New Avenue to Investigate: the Autophagic Process
Chapter 9 A new avenue to investigate: the autophagic process. From Crohn’s disease to Chlamydia A.S. Peña, O. Karimi, and J.B.A. Crusius Chapter 9 R1 Summary R2 R3 The finding that a variant (T300A) of the autophagy related 16-like 1 (ATG16L1) gene is R4 associated with Crohn’s disease suggests that the inability to eliminate intestinal intracellular R5 microbes via (macro)autophagy may be involved in the pathogenesis of this disease. The R6 variant induces an autophagy-associated defect in Paneth cells, specialized cells in the R7 crypts of Lieberkühn within the small intestine that secrete defensins and other antimicrobial R8 peptides. Moreover, other loci, IRGM and LRRK2 involved in autophagy and implicated in R9 clearance of intracellular bacteria have been found to be associated with Crohn’s disease. R10 These unexpected findings have changed the focus of research in Crohn’s disease and have R11 stimulated an in-depth study of the complex process of autophagy. Autophagy is regulated by R12 many genes and is emerging as a central player in the immunologic control of intracellular R13 bacteria. Chlamydia trachomatis is able to inhibit apoptosis and the production of nuclear R14 factor -k B (NF-kB) in order to survive in the host. Extensive studies on association of genes R15 regulating the inflammatory response in experimental models and in humans as revised in R16 208 other sections of this supplement have failed to explain the long term complications of C. R17 trachomatis infection. The advances in the molecular pathways of Chlamydia infection and R18 their effects on the Golgi apparatus and other cytoplasmic organelles suggests that defects R19 in autophagic genes may predispose the host to chronic infection and be responsible for the R20 long-term complications. -
Viperin, and Its Ability to Enervate RNA Virus Transcription and Replication in Vitro K.A.S.N
Fish and Shellfish Immunology 92 (2019) 655–666 Contents lists available at ScienceDirect Fish and Shellfish Immunology journal homepage: www.elsevier.com/locate/fsi Full length article Molecular characterization and expression analysis of rockfish (Sebastes T schlegelii) viperin, and its ability to enervate RNA virus transcription and replication in vitro K.A.S.N. Shanakaa, M.D. Neranjan Tharukaa,b, Thanthrige Thiunuwan Priyathilakaa, ∗ Jehee Leea,b, a Department of Marine Life Sciences & Fish Vaccine Research Center, Jeju National University, Jeju Self-Governing Province, 63243, Republic of Korea b Marine Science Institute, Jeju National University, Jeju Self-Governing Province, 63333, Republic of Korea ARTICLE INFO ABSTRACT Keywords: Viperin, also known as RSAD2 (Radical S-adenosyl methionine domain containing 2), is an interferon-induced Sebastes schlegelii endoplasmic reticulum-associated antiviral protein. Previous studies have shown that viperin levels are elevated Viperin in the presence of viral RNA, but it has rarely been characterized in marine organisms. This study was designed Antiviral protein to functionally characterize rockfish viperin (SsVip), to examine the effects of different immune stimulants onits Immune challenge expression, and to determine its subcellular localization. SsVip is a 349 amino acid protein with a predicted Subcellular localization molecular mass of 40.24 kDa. It contains an S-adenosyl L-methionine binding conserved domain with a CNYK- mRNA expression Innate immunity CGFC sequence. Unchallenged tissue expression analysis using quantitative real time PCR (qPCR) revealed SsVip expression to be the highest in the blood, followed by the spleen. When challenged with poly I:C, SsVip was upregulated by approximately 60-fold in the blood after 24 h, and approximately 50-fold in the spleen after 12 h. -
GBP5 Repression Suppresses the Metastatic Potential and PD-L1 Expression in Triple-Negative Breast Cancer
biomedicines Article GBP5 Repression Suppresses the Metastatic Potential and PD-L1 Expression in Triple-Negative Breast Cancer Shun-Wen Cheng 1, Po-Chih Chen 2,3,4 , Min-Hsuan Lin 5, Tzong-Rong Ger 1, Hui-Wen Chiu 5,6,7,* and Yuan-Feng Lin 5,8,* 1 Department of Biomedical Engineering, Chung Yuan Christian University, Taoyuan City 32023, Taiwan; [email protected] (S.-W.C.); [email protected] (T.-R.G.) 2 Neurology Department, Shuang-Ho Hospital, Taipei Medical University, New Taipei City 23561, Taiwan; [email protected] 3 Taipei Neuroscience Institute, Taipei Medical University, New Taipei City 23561, Taiwan 4 Department of Neurology, School of Medicine, College of Medicine, Taipei Medical University, Taipei 11031, Taiwan 5 Graduate Institute of Clinical Medicine, College of Medicine, Taipei Medical University, Taipei 11031, Taiwan; [email protected] 6 Department of Medical Research, Shuang Ho Hospital, Taipei Medical University, New Taipei City 23561, Taiwan 7 TMU Research Center of Urology and Kidney, Taipei Medical University, Taipei 11031, Taiwan 8 Cell Physiology and Molecular Image Research Center, Wan Fang Hospital, Taipei Medical University, Taipei 11696, Taiwan * Correspondence: [email protected] (H.-W.C.); [email protected] (Y.-F.L.); Tel.: +886-2-22490088 (H.-W.C.); +886-2-2736-1661 (ext. 3106) (Y.-F.L.) Citation: Cheng, S.-W.; Chen, P.-C.; Abstract: Triple-negative breast cancer (TNBC) is the most aggressive breast cancer subtype because Lin, M.-H.; Ger, T.-R.; Chiu, H.-W.; of its high metastatic potential. Immune evasion due to aberrant expression of programmed cell Lin, Y.-F. -
Original Article Nek6 and Hif-1Α Cooperate with the Cytoskeletal Gateway of Drug Resistance to Drive Outcome in Serous Ovarian Cancer
Am J Cancer Res 2015;5(6):1862-1877 www.ajcr.us /ISSN:2156-6976/ajcr0007583 Original Article Nek6 and Hif-1α cooperate with the cytoskeletal gateway of drug resistance to drive outcome in serous ovarian cancer Marta De Donato1, Mara Fanelli2, Marisa Mariani3, Giuseppina Raspaglio1, Deep Pandya3, Shiquan He3, Paul Fiedler3, Marco Petrillo1, Giovanni Scambia1, Cristiano Ferlini3 1Department of Gynecology, Catholic University of The Sacred Heart, Largo Agostino Gemelli 8. 00168 Rome, Italy; 2Laboratory of Molecular Oncology, Jean Paul IInd Research Foundation, Largo Agostino Gemelli 1. 86100 Campobasso, Italy; 3Danbury Hospital Research Institute, 131 West Street 06810 Danbury, CT, USA Received March 4, 2015; Accepted May 10, 2015; Epub May 15, 2015; Published June 1, 2015 Abstract: Hypoxia selects the most aggressive and drug-resistant clones in solid malignancies. One of the pivotal transcription factors induced by hypoxia is Hif-1α. However, in serous ovarian cancer (SEOC), Hif-1α expression is not a prognostic biomarker. This study aims to assess the hypothesis that the serine-threonine kinase Nek6 functions as a downstream effector cooperating with Hif-1α in driving ovarian cancer aggressiveness. Nek6 was overexpressed and Hif-1α was silenced in A2780 cells. Nek6 was also stably silenced in Hey cells. The dependence of Nek6 expression on Hif-1α was assayed as a function of hypoxic growth conditions. Nek6 interaction with the cytoskeletal gateway of drug resistance was investigated with far western blot. The co-expression of NEK6, HIF1A, TUBB3 and GBP1 transcripts was quantified with qPCR in two cohorts of SEOC patients (346 locally treated patients and 344 from the TCGA dataset).