Nicotinamide Mononucleotide Adenylyltransferase Expression in Mitochondrial Matrix Delays Wallerian Degeneration

Total Page:16

File Type:pdf, Size:1020Kb

Nicotinamide Mononucleotide Adenylyltransferase Expression in Mitochondrial Matrix Delays Wallerian Degeneration 6276 • The Journal of Neuroscience, May 13, 2009 • 29(19):6276–6284 Cellular/Molecular Nicotinamide Mononucleotide Adenylyltransferase Expression in Mitochondrial Matrix Delays Wallerian Degeneration Naoki Yahata,1 Shigeki Yuasa,2 and Toshiyuki Araki1 Departments of 1Peripheral Nervous System Research and 2Ultrastructural Research, National Institute of Neuroscience, National Center of Neurology and Psychiatry, Kodaira, Tokyo 187-8502, Japan Studies of naturally occurring mutant mice, wlds, showing delayed Wallerian degeneration phenotype, suggest that axonal degeneration is an active process. We previously showed that increased nicotinamide adenine dinucleotide (NAD)-synthesizing activity by overexpres- sion of nicotinamide mononucleotide adenylyltransferase (NMNAT) is the essential component of the Wld s protein, the expression of whichisresponsibleforthedelayedWalleriandegenerationphenotypeinwlds mice.Indeed,NMNAToverexpressioninculturedneurons providesrobustprotectiontoneurites,aswell.ToexaminetheeffectofNMNAToverexpressioninvivoandtoanalyzethemechanismthat causes axonal protection, we generated transgenic mice (Tg) overexpressing NMNAT1 (nuclear isoform), NMNAT3 (mitochondrial isoform), or the Wld s protein bearing a W258A mutation, which disrupts NAD-synthesizing activity of the Wld s protein. Wallerian degeneration delay in NMNAT3-Tg was similar to that in wlds mice, whereas axonal protection in NMNAT1-Tg or Wld s(W258A)-Tg was not detectable. Detailed analysis of subcellular localization of the overexpressed proteins revealed that the axonal protection phenotype was correlated with localization of NMNAT enzymatic activity to mitochondrial matrix. Furthermore, we found that isolated mitochon- dria from mice showing axonal protection expressed unchanged levels of respiratory chain components, but were capable of increased ATP production. These results suggest that axonal protection by NMNAT expression in neurons is provided by modifying mitochondrial function. Alteration of mitochondrial function may constitute a novel tool for axonal protection, as well as a possible treatment of diseases involving axonopathy. Introduction to the complete sequence of nicotinamide mononucleotide ad- Axonal degeneration is now regarded as a major component of enylyltransferase 1 (NMNAT1), an enzyme in the NAD biosyn- many neurodegenerative diseases, including Parkinson’s disease thetic pathway that generates NAD in the nucleus (Conforti et al., and Alzheimer’s disease (Raff et al., 2002). Therefore, the axonal 2000; Mack et al., 2001). We previously showed that overexpres- degeneration process could well be a therapeutic target against sion of NMNAT enzymatic activity is the essential mechanism s these diseases. The discovery of a spontaneous dominant muta- that causes the axonal protection phenotype in wld mice (Araki tion in mice that results in delayed axonal degeneration, the Wal- et al., 2004). NMNAT is a family of proteins that mediates NAD lerian degeneration slow (wlds) mice, strongly suggests that ax- synthesis by using nicotinamide mononucleotide (NMN) and onal degeneration is an active process of self-destruction (Lunn et ATP as substrates. In addition to NMNAT1, NMNAT2 (located al., 1989). The wlds mutation comprises an 85 kb tandem tripli- mostly in Golgi apparatus and expressed most highly in mamma- cation, which causes overexpression of a chimeric molecule lian brain) and NMNAT3 (located mostly in mitochondria) have (Wld s protein). This protein is composed of the N-terminal 70 aa been identified in mammals (Berger et al., 2005). We previously of Ufd2a (ubiquitin fusion degradation protein 2a)/Ube4b (ubiq- showed that not only NMNAT1 but also NMNAT3 overexpres- uitination factor E4b), a ubiquitin-chain assembly factor, fused sion in neurons is protective in an in vitro Wallerian degeneration model, which supports our hypothesis that NMNAT enzymatic activity is the key for axonal protection (Sasaki et al., 2006). Received Sept. 9, 2008; revised April 1, 2009; accepted April 13, 2009. There are conflicting results against our hypothesis. Coleman This work was supported by grants from Ministry of Health, Labour, and Welfare (Research on Psychiatric and and colleagues showed that the NAD content in wlds mouse tissue Neurological Diseases and Mental Health), National Institute of Biomedical Innovation (Program for Promotion of is similar to that in wild-type despite the increased NMNAT ac- FundamentalStudiesinHealthSciences),Kakenhi(19650089),TerumoLifeScienceFoundation,SuzukenMemorial s Foundation,KowaLifeScienceFoundation,SankyoFoundationforLifeScience,AstellasFoundationforResearchon tivity in wld mice (Mack et al., 2001). Furthermore, they recently Metabolic Disorders, Mishima Kaiun Memorial Foundation, and Takeda Science Foundation (T.A.). pCAGGS is a gift showed that NMNAT1-overexpressing transgenic mice do not from Dr. J. Miyazaki (Osaka University, Osaka, Japan). show delayed Wallerian degeneration observed in wlds mice Correspondence should be addressed to Toshiyuki Araki, Department of Peripheral Nervous System Research, (Conforti et al., 2007), which supports their hypothesis that National Institute of Neuroscience, National Center of Neurology and Psychiatry, 4-1-1 Ogawa-higashi, Kodaira, s Tokyo 187-8502, Japan. E-mail: [email protected]. N-terminal Ufd2a region of the Wld protein plays a role (Laser et DOI:10.1523/JNEUROSCI.4304-08.2009 al., 2006). These reports suggest that NMNAT activity may not be Copyright © 2009 Society for Neuroscience 0270-6474/09/296276-09$15.00/0 crucial for axonal protection. Yahata et al. • Delayed Wallerian Degeneration in NMNAT3-Tg Mice J. Neurosci., May 13, 2009 • 29(19):6276–6284 • 6277 In this study, to analyze the requirement of NMNAT activity 1-␮m-thick semithin sections were cut and stained with toluidine blue for axonal protection in vivo, we generated and analyzed the phe- for initial light-microscopic analysis. Subsequently, ultrathin sections notype of mice that overexpressed either NMNAT1 (NMNAT1- were prepared, stained with lead citrate and uranyl acetate, and analyzed Tg), NMNAT3 (NMNAT3-Tg), or the Wld s protein bearing a by a transmission electron microscope (Hitachi H-7000). W258A mutation that disrupts NAD producing activity of the For counting protected axons in injured nerve, the numbers of mor- Wld s protein [Wld s(W258A)-Tg]. We found that NMNAT3-Tg phologically intact axons (designated by preserved myelin sheath struc- ϭ mice demonstrated delayed Wallerian degeneration, similar to tures) in transected sciatic nerves of indicated genotypes (n 7 for each s s genotype) were determined on semithin transverse sections at 7 d after wld mice; whereas NMNAT1-Tg or Wld (W258A)-Tg mice did ϫ ␮ not show any axonal protection. In both NMNAT3-Tg and wlds injury. The entire axons in a 100 100 m square field were counted mice, significant amounts of NMNAT activity were found to be under a light microscopy for each sample. Assays of NMNAT enzymatic activities. Whole cerebrum was lysed in a located in the mitochondrial matrix. We further found that mi- buffer containing 50 mM Tris-HCl at pH 7.4, 300 mM NaCl, 5 mM EDTA, tochondrial localization of NMNAT activity resulted in increased and 1% Triton X-100 and protease inhibitor mixture EDTA-free ATP synthetic capacity without affecting the expression profile of (Roche). NMNAT activity was measured by SpectraMax M2 (Molecular mitochondrial enzymes of the respiratory chain. These data suggest Devices) at 37°C on 96-well plates, based on the procedure as previously that mitochondrial localization of NMNAT activity plays an impor- described (Balducci et al., 1995). Briefly, a 100 ␮l mixture containing 28 tant role in NMNAT expression-mediated axonal protection. mM HEPES at pH 7.4, 46 mM ethanol, 16 mM semicarbazide-HCl, 10 mM MgCl2,2mM ATP,6Uofalcohol dehydrogenase (Sigma-Aldrich), and Materials and Methods lysate supernatant (30 ␮g protein) was made. The reaction was started by ␮ ␧ Generation of transgenic mice. The transgene was constructed by inserting adding 10 lof20mM NMN. Optical density at 340 nm ( 340 of NADH: ␮ the cDNA 3Ј downstream of the chicken ␤-actin promoter in the 3.0 mM/100 l in 96-well plate, one-half area) was measured for 1 h. One pCAGGS plasmid (a kind gift from Dr. J. Miyazaki, Osaka University, unit of activity was defined as the amount of protein that catalyzes the Osaka, Japan) (Niwa et al., 1991). The cDNAs for mouse NMNAT1 and synthesis of 1 mmol of NAD per hour. NMNAT3 used as transgenes were obtained from expressed sequence- Subcellular fractionation. Fractionation of adult mouse cerebrum to tagged clones (BC038133 for murine NMNAT1; BC005737 for murine obtain nucleus, mitochondria, lysosome/peroxysome, microsome, and NMNAT3). cDNA for Wld s protein bearing W258A mutation was gen- cytosol fractions was performed by sequential centrifugation as described erated as previously described (Araki et al., 2004). The integrity of each previously (Tateno et al., 2004) (also shown in Fig. 4A). Ten percent of each clone was verified by nucleotide sequence analysis. Transgenic constructs fraction was subjected to SDS-PAGE and immunoblotting with antibodies were microinjected into fertilized BDF1 mouse oocytes by following stan- against His tag, Wld-18, Nucleoporin p62 (BD Biosciences), Prohibitin dard procedure (Conner, 2004). Genomic integrations of transgenes were (NeoMarkers), Adaptin ␥ (BD Biosciences), PMP70 (Affinity Bioreagents), examined by Southern blot analysis and/or PCR with the following prim- and superoxide
Recommended publications
  • Nicotinamide Adenine Dinucleotide Is Transported Into Mammalian
    RESEARCH ARTICLE Nicotinamide adenine dinucleotide is transported into mammalian mitochondria Antonio Davila1,2†, Ling Liu3†, Karthikeyani Chellappa1, Philip Redpath4, Eiko Nakamaru-Ogiso5, Lauren M Paolella1, Zhigang Zhang6, Marie E Migaud4,7, Joshua D Rabinowitz3, Joseph A Baur1* 1Department of Physiology, Institute for Diabetes, Obesity, and Metabolism, Perelman School of Medicine, University of Pennsylvania, Philadelphia, United States; 2PARC, Perelman School of Medicine, University of Pennsylvania, Philadelphia, United States; 3Lewis-Sigler Institute for Integrative Genomics, Department of Chemistry, Princeton University, Princeton, United States; 4School of Pharmacy, Queen’s University Belfast, Belfast, United Kingdom; 5Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, United States; 6College of Veterinary Medicine, Northeast Agricultural University, Harbin, China; 7Mitchell Cancer Institute, University of South Alabama, Mobile, United States Abstract Mitochondrial NAD levels influence fuel selection, circadian rhythms, and cell survival under stress. It has alternately been argued that NAD in mammalian mitochondria arises from import of cytosolic nicotinamide (NAM), nicotinamide mononucleotide (NMN), or NAD itself. We provide evidence that murine and human mitochondria take up intact NAD. Isolated mitochondria preparations cannot make NAD from NAM, and while NAD is synthesized from NMN, it does not localize to the mitochondrial matrix or effectively support oxidative phosphorylation. Treating cells *For correspondence: with nicotinamide riboside that is isotopically labeled on the nicotinamide and ribose moieties [email protected] results in the appearance of doubly labeled NAD within mitochondria. Analogous experiments with †These authors contributed doubly labeled nicotinic acid riboside (labeling cytosolic NAD without labeling NMN) demonstrate equally to this work that NAD(H) is the imported species.
    [Show full text]
  • Identification of Evolutionary and Kinetic Drivers of NAD-Dependent Signaling
    Identification of evolutionary and kinetic drivers of NAD-dependent signaling Mathias Bockwoldta, Dorothée Houryb, Marc Nierec, Toni I. Gossmannd,e, Ines Reinartzf,g, Alexander Schugh, Mathias Zieglerc, and Ines Heilanda,1 aDepartment of Arctic and Marine Biology, UiT The Arctic University of Norway, 9017 Tromsø, Norway; bDepartment of Biological Sciences, University of Bergen, 5006 Bergen, Norway; cDepartment of Biomedicine, University of Bergen, 5009 Bergen, Norway; dDepartment of Animal and Plant Sciences, Western Bank, University of Sheffield, S10 2TN Sheffield, United Kingdom; eDepartment of Animal Behaviour, Bielefeld University, 33501 Bielefeld, Germany; fDepartment of Physics, Karlsruhe Institute of Technology, 76131 Karlsruhe, Germany; gSteinbuch Centre for Computing, Karlsruhe Institute of Technology, 76344 Eggenstein-Leopoldshafen, Germany; and hJohn von Neumann Institute for Computing, Jülich Supercomputing Centre, Forschungszentrum Jülich, 52425 Jülich, Germany Edited by Richard H. Goodman, Vollum Institute, Portland, OR, and approved June 24, 2019 (received for review February 9, 2019) Nicotinamide adenine dinucleotide (NAD) provides an important The enzymes involved in these processes are sensitive to the link between metabolism and signal transduction and has emerged available NAD concentration. Therefore, NAD-dependent signal- as central hub between bioenergetics and all major cellular events. ing can act as a transmitter of changes in cellular energy ho- NAD-dependent signaling (e.g., by sirtuins and poly–adenosine meostasis, for example, to regulate gene expression or metabolic diphosphate [ADP] ribose polymerases [PARPs]) consumes consider- activity (30). able amounts of NAD. To maintain physiological functions, NAD The significance of NAD-dependent signaling for NAD ho- consumption and biosynthesis need to be carefully balanced. Using meostasis has long been underestimated.
    [Show full text]
  • An Alu-Mediated Duplication in NMNAT1, Involved in NAD Biosynthesis, Causes a Novel Syndrome, SHILCA, Affecting Multiple Tissues and Organs
    An Alu-mediated duplication in NMNAT1, involved in NAD biosynthesis, causes a novel syndrome, SHILCA, affecting multiple tissues and organs Nicola Bedoni1,2‡; Mathieu Quinodoz1,3,4,5‡; Michele Pinelli6,7*; Gerarda Cappuccio6,7; Annalaura Torella6,8; Vincenzo Nigro6,8; Francesco Testa9; Francesca Simonelli9; TUDP (Telethon Undiagnosed Disease Program); Marta Corton10,11; Susanna Lualdi12; Federica Lanza12; Giovanni Morana13; Carmen Ayuso10,11; Maja Di Rocco12; Mirella Filocamo12; Sandro Banfi6,8; Nicola Brunetti-Pierri6,7; Andrea Superti-Furga2‡; Carlo Rivolta3,4,5‡* 1Department of Computational Biology, University of Lausanne, Lausanne, Switzerland. 2Division of Genetic Medicine, Lausanne University Hospital, Lausanne, Switzerland. 3Department of Genetics and Genome Biology, University of Leicester, Leicester, United Kingdom. 4Institute of Molecular and Clinical Ophthalmology Basel, Basel, Switzerland. 5Department of Ophthalmology, University of Basel, Basel, Switzerland. 6Telethon Institute of Genetics and Medicine (TIGEM), Pozzuoli (Naples), Italy. 75Department of Translational Medicine, Section of Pediatrics, Federico II University, Naples, Italy. 8Medical Genetics, Department of Precision Medicine, University of Campania “Luigi Vanvitelli”, Naples, Italy. 9Eye Clinic, Multidisciplinary Department of Medical, Surgical and Dental Sciences, University of Campania “Luigi Vanvitelli”, Naples, Italy. 10Department of Genetics, Instituto de Investigación Sanitaria – Fundación Jiménez Díaz, University Hospital, Universidad Autónoma de Madrid
    [Show full text]
  • ADHD) Gene Networks in Children of Both African American and European American Ancestry
    G C A T T A C G G C A T genes Article Rare Recurrent Variants in Noncoding Regions Impact Attention-Deficit Hyperactivity Disorder (ADHD) Gene Networks in Children of both African American and European American Ancestry Yichuan Liu 1 , Xiao Chang 1, Hui-Qi Qu 1 , Lifeng Tian 1 , Joseph Glessner 1, Jingchun Qu 1, Dong Li 1, Haijun Qiu 1, Patrick Sleiman 1,2 and Hakon Hakonarson 1,2,3,* 1 Center for Applied Genomics, Children’s Hospital of Philadelphia, Philadelphia, PA 19104, USA; [email protected] (Y.L.); [email protected] (X.C.); [email protected] (H.-Q.Q.); [email protected] (L.T.); [email protected] (J.G.); [email protected] (J.Q.); [email protected] (D.L.); [email protected] (H.Q.); [email protected] (P.S.) 2 Division of Human Genetics, Department of Pediatrics, The Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA 3 Department of Human Genetics, Children’s Hospital of Philadelphia, Philadelphia, PA 19104, USA * Correspondence: [email protected]; Tel.: +1-267-426-0088 Abstract: Attention-deficit hyperactivity disorder (ADHD) is a neurodevelopmental disorder with poorly understood molecular mechanisms that results in significant impairment in children. In this study, we sought to assess the role of rare recurrent variants in non-European populations and outside of coding regions. We generated whole genome sequence (WGS) data on 875 individuals, Citation: Liu, Y.; Chang, X.; Qu, including 205 ADHD cases and 670 non-ADHD controls. The cases included 116 African Americans H.-Q.; Tian, L.; Glessner, J.; Qu, J.; Li, (AA) and 89 European Americans (EA), and the controls included 408 AA and 262 EA.
    [Show full text]
  • Nicotinamide Mononucleotide Adenylyl Transferase- Mediated Axonal Protection Requires Enzymatic Activity but Not Increased Level
    The Journal of Neuroscience, April 29, 2009 • 29(17):5525–5535 • 5525 Development/Plasticity/Repair Nicotinamide Mononucleotide Adenylyl Transferase- Mediated Axonal Protection Requires Enzymatic Activity But Not Increased Levels of Neuronal Nicotinamide Adenine Dinucleotide Yo Sasaki,1* Bhupinder P. S. Vohra,1* Frances E. Lund,4 and Jeffrey Milbrandt1,2,3 Departments of 1Pathology and Immunology and 2Neurology and 3Hope Center for Neurological Disorders, Washington University School of Medicine, St. Louis, Missouri 63110, and 4Division of Allergy, Immunology, and Rheumatology, University of Rochester, Rochester, New York 14642 Axonal degeneration is a hallmark of many neurological disorders. Studies in animal models of neurodegenerative diseases indicate that axonaldegenerationisanearlyeventinthediseaseprocess,anddelayingthisprocesscanleadtodecreasedprogressionofthediseaseand survival extension. Overexpression of the Wallerian degeneration slow (Wld s) protein can delay axonal degeneration initiated via axotomy, chemotherapeutic agents, or genetic mutations. The Wld s protein consists of the N-terminal portion of the ubiquitination factor Ube4b fused to the nicotinamide adenine dinucleotide (NAD ϩ) biosynthetic enzyme nicotinamide mononucleotide adenylyl transferase 1 (Nmnat1). We previously showed that the Nmnat1 portion of this fusion protein was the critical moiety for Wlds-mediated axonalprotection.Here,wedescribethedevelopmentofanautomatedquantitativeassayforassessingaxonaldegeneration.Thismethod successfullyshowedthatNmnat1enzymaticactivityisimportantforaxonalprotectionasmutantswithreducedenzymaticactivitylacked
    [Show full text]
  • Measuring NAD+ and Related Metabolites Using Liquid Chromatography Mass Spectrometry
    life Review NADomics: Measuring NAD+ and Related Metabolites Using Liquid Chromatography Mass Spectrometry Nady Braidy 1,2,* , Maria D. Villalva 1 and Ross Grant 3,4 1 Centre for Healthy Brain Ageing, School of Psychiatry, University of New South Wales, Sydney, NSW 2052, Australia; [email protected] 2 Euroa Centre, UNSW School of Psychiatry, NPI, Prince of Wales Hospital, Barker Street, Randwick, Sydney, NSW 2031, Australia 3 School of Medical Sciences, University of New South Wales, Sydney, NSW 2052, Australia; [email protected] 4 Australasian Research Institute, Sydney Adventist Hospital, Sydney, NSW 2076, Australia * Correspondence: [email protected]; Tel.: +61-2-9382-3763; Fax: +61-2-9382-3774 Abstract: Nicotinamide adenine dinucleotide (NAD+) and its metabolome (NADome) play impor- tant roles in preserving cellular homeostasis. Altered levels of the NADome may represent a likely indicator of poor metabolic function. Accurate measurement of the NADome is crucial for biochemi- cal research and developing interventions for ageing and neurodegenerative diseases. In this mini review, traditional methods used to quantify various metabolites in the NADome are discussed. Owing to the auto-oxidation properties of most pyridine nucleotides and their differential chemical stability in various biological matrices, accurate assessment of the concentrations of the NADome is an analytical challenge. Recent liquid chromatography mass spectrometry (LC-MS) techniques which overcome some of these technical challenges for quantitative assessment of the NADome in the blood, CSF, and urine are described. Specialised HPLC-UV, NMR, capillary zone electrophoresis, Citation: Braidy, N.; Villalva, M.D.; or colorimetric enzymatic assays are inexpensive and readily available in most laboratories but lack Grant, R.
    [Show full text]
  • NMNAT1 Mutations Cause Leber Congenital Amaurosis
    NMNAT1 Mutations Cause Leber Congenital Amaurosis The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Falk, Marni J., Qi Zhang, Eiko Nakamaru-Ogiso, Chitra Kannabiran, Zoe Kelly, Christina Chakarova, Isabelle Audo, et al. 2012. NMNAT1 mutations cause Leber congenital amaurosis. Nature Genetics 44(9): 1040-1045. Published Version doi:10.1038/ng.2361 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:10622980 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA NIH Public Access Author Manuscript Nat Genet. Author manuscript; available in PMC 2013 March 01. NIH-PA Author ManuscriptPublished NIH-PA Author Manuscript in final edited NIH-PA Author Manuscript form as: Nat Genet. 2012 September ; 44(9): 1040–1045. doi:10.1038/ng.2361. NMNAT1 mutations cause Leber congenital amaurosis Marni J Falk1,2,22, Qi Zhang3,4,22, Eiko Nakamaru-Ogiso5, Chitra Kannabiran6, Zoe Fonseca- Kelly3,4, Christina Chakarova7, Isabelle Audo8,9,10,11, Donna S Mackay7, Christina Zeitz8,9,10, Arundhati Dev Borman7,12, Magdalena Staniszewska3,4, Rachna Shukla6, Lakshmi Palavalli6, Saddek Mohand-Said8,9,10,11, Naushin H Waseem7, Subhadra Jalali6,13, Juan C Perin14, Emily Place1,3,4, Julian Ostrovsky1, Rui Xiao15, Shomi S Bhattacharya7,16, Mark Consugar3,4, Andrew R Webster7,12, José-Alain Sahel8,9,10,11,17,18, Anthony T Moore7,12,19, Eliot L Berson4, Qin Liu3,4, Xiaowu Gai20,21,23, and Eric A.
    [Show full text]
  • Potential Therapeutic Benefit of NAD+ Supplementation for Glaucoma And
    nutrients Review Potential Therapeutic Benefit of NAD+ Supplementation for Glaucoma and Age-Related Macular Degeneration 1,2 2,3 2,4 1, , Gloria Cimaglia , Marcela Votruba , James E. Morgan , Helder André * y and 1, , Pete A. Williams * y 1 Department of Clinical Neuroscience, Division of Eye and Vision, St. Erik Eye Hospital, Karolinska Institutet, 112 82 Stockholm, Sweden; CimagliaG@cardiff.ac.uk 2 School of Optometry and Vision Sciences, Cardiff University, Cardiff CF24 4HQ, Wales, UK; VotrubaM@cardiff.ac.uk (M.V.); morganje3@cardiff.ac.uk (J.E.M.) 3 Cardiff Eye Unit, University Hospital Wales, Cardiff CF14 4XW, Wales, UK 4 School of Medicine, Cardiff University, Cardiff CF14 4YS, Wales, UK * Correspondence: [email protected] (H.A.); [email protected] (P.A.W.) These authors contributed equally to this work. y Received: 25 August 2020; Accepted: 17 September 2020; Published: 19 September 2020 Abstract: Glaucoma and age-related macular degeneration are leading causes of irreversible blindness worldwide with significant health and societal burdens. To date, no clinical cures are available and treatments target only the manageable symptoms and risk factors (but do not remediate the underlying pathology of the disease). Both diseases are neurodegenerative in their pathology of the retina and as such many of the events that trigger cell dysfunction, degeneration, and eventual loss are due to mitochondrial dysfunction, inflammation, and oxidative stress. Here, we critically review how a decreased bioavailability of nicotinamide adenine dinucleotide (NAD; a crucial metabolite in healthy and disease states) may underpin many of these aberrant mechanisms. We propose how exogenous sources of NAD may become a therapeutic standard for the treatment of these conditions.
    [Show full text]
  • (NF1) As a Breast Cancer Driver
    INVESTIGATION Comparative Oncogenomics Implicates the Neurofibromin 1 Gene (NF1) as a Breast Cancer Driver Marsha D. Wallace,*,† Adam D. Pfefferle,‡,§,1 Lishuang Shen,*,1 Adrian J. McNairn,* Ethan G. Cerami,** Barbara L. Fallon,* Vera D. Rinaldi,* Teresa L. Southard,*,†† Charles M. Perou,‡,§,‡‡ and John C. Schimenti*,†,§§,2 *Department of Biomedical Sciences, †Department of Molecular Biology and Genetics, ††Section of Anatomic Pathology, and §§Center for Vertebrate Genomics, Cornell University, Ithaca, New York 14853, ‡Department of Pathology and Laboratory Medicine, §Lineberger Comprehensive Cancer Center, and ‡‡Department of Genetics, University of North Carolina, Chapel Hill, North Carolina 27514, and **Memorial Sloan-Kettering Cancer Center, New York, New York 10065 ABSTRACT Identifying genomic alterations driving breast cancer is complicated by tumor diversity and genetic heterogeneity. Relevant mouse models are powerful for untangling this problem because such heterogeneity can be controlled. Inbred Chaos3 mice exhibit high levels of genomic instability leading to mammary tumors that have tumor gene expression profiles closely resembling mature human mammary luminal cell signatures. We genomically characterized mammary adenocarcinomas from these mice to identify cancer-causing genomic events that overlap common alterations in human breast cancer. Chaos3 tumors underwent recurrent copy number alterations (CNAs), particularly deletion of the RAS inhibitor Neurofibromin 1 (Nf1) in nearly all cases. These overlap with human CNAs including NF1, which is deleted or mutated in 27.7% of all breast carcinomas. Chaos3 mammary tumor cells exhibit RAS hyperactivation and increased sensitivity to RAS pathway inhibitors. These results indicate that spontaneous NF1 loss can drive breast cancer. This should be informative for treatment of the significant fraction of patients whose tumors bear NF1 mutations.
    [Show full text]
  • Mutations in NMNAT1 Cause Leber Congenital Amaurosis and Identify a New Disease Pathway for Retinal Degeneration
    LETTERS Mutations in NMNAT1 cause Leber congenital amaurosis and identify a new disease pathway for retinal degeneration Robert K Koenekoop1,20, Hui Wang2,3,20, Jacek Majewski4, Xia Wang3, Irma Lopez1, Huanan Ren1, Yiyun Chen3, Yumei Li2,3, Gerald A Fishman5, Mohammed Genead5, Jeremy Schwartzentruber4, Naimesh Solanki2, Elias I Traboulsi6, Jingliang Cheng3, Clare V Logan7, Martin McKibbin8, Bruce E Hayward7, David A Parry7, Colin A Johnson7, Mohammed Nageeb1, Finding of Rare Disease Genes (FORGE) Canada Consortium9, James A Poulter7, Moin D Mohamed10, Hussain Jafri11, Yasmin Rashid12, Graham R Taylor7, Vafa Keser1, Graeme Mardon3,13–17, Huidan Xu3, Chris F Inglehearn7, Qing Fu1,18, Carmel Toomes7 & Rui Chen2,3,19 Leber congenital amaurosis (LCA) is a blinding retinal disease due to the expression of a unique chimeric protein, named the Wlds that presents within the first year after birth. Using exome fusion protein, that is composed of ubiquitination factor E4B (Ube4b) sequencing, we identified mutations in the nicotinamide and full-length Nmnat1 (refs. 8,9), a highly conserved protein that is adenine dinucleotide (NAD) synthase gene NMNAT1 encoding present throughout evolution from archaebacteria to humans. Recent nicotinamide mononucleotide adenylyltransferase 1 in eight work has shown that the Nmnat1 portion of the Wlds fusion protein families with LCA, including the family in which LCA was is responsible for the observed delay in axonal degeneration10. originally linked to the LCA9 locus. Notably, all individuals NMNAT1 is an essential enzyme in NAD biosynthesis. Despite the with NMNAT1 mutations also have macular colobomas, intense interest in and importance of NMNAT1, the mechanism by which are severe degenerative entities of the central retina which NMNAT1 protects against neurodegeneration remains contro- (fovea) devoid of tissue and photoreceptors.
    [Show full text]
  • [Frontiers in Bioscience 14, 410-431, January 1, 2009] 410 the NMN/Namn Adenylyltransferase (NMNAT) Protein Family Corinna Lau
    [Frontiers in Bioscience 14, 410-431, January 1, 2009] The NMN/NaMN adenylyltransferase (NMNAT) protein family Corinna Lau, Marc Niere, Mathias Ziegler Department of Molecular Biology, University of Bergen, Thormøhlensgate 55, N-5008 Bergen, Norway TABLE OF CONTENTS 1. Abstract 2. Introduction 3. Structure, physicochemical and catalytic properties of NMNATs 3.1. Overview 3.2. Physicochemical properties of NMNATs 3.2.1. Bacterial NMNATs – NadD, NadR, and NadM 3.2.2. Yeast NMNATs – scNMA1 and scNMA2 3.2.3. Plant NMNAT 3.2.4. Vertebrate NMNATs – human NMNAT1, 2, and 3 3.3. NMNAT protein structure and substrate binding 3.3.1. NMNATs – globular α/β-proteins 3.3.2. The dinucleotide binding Rossmann fold represents the core structure of NMNATs 3.3.3. ATP binding is highly conserved 3.3.4. Structural water molecules facilitate mononucleotide binding and dual substrate specificity 3.3.5. Homo-oligomeric assembly of NMNATs 3.4. Catalytic properties and substrate specificities of the human NMNATs 3.4.1. Pyridine nucleotide substrates 3.4.2. Purine nucleotide substrates 3.5. The mechanism of adenylyltransfer by NMNATs 3.5.1. A ternary complex and a nucleophilic attack 3.5.2. Substrate binding order 3.6. Small molecule effectors of NMNATs 4. The Biology of NMNATs 4.1. Tissue and subcellular distribution of human NMNAT isoforms 4.1.1. Tissue specific expression 4.1.2. Subcellular distribution and compartment-specific functions 4.2. Gene structure and expression 4.2.1. Identification of NMNATs from unicellular organisms 4.2.2. Human NMNAT1 4.2.3. Human NMNAT2 4.2.4.
    [Show full text]
  • NMNAT1 Mutations Cause Leber Congenital Amaurosis
    NMNAT1 Mutations Cause Leber Congenital Amaurosis The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Falk, Marni J., Qi Zhang, Eiko Nakamaru-Ogiso, Chitra Kannabiran, Zoe Kelly, Christina Chakarova, Isabelle Audo, et al. 2012. NMNAT1 mutations cause Leber congenital amaurosis. Nature Genetics 44(9): 1040-1045. Published Version doi:10.1038/ng.2361 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:10622980 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA NIH Public Access Author Manuscript Nat Genet. Author manuscript; available in PMC 2013 March 01. NIH-PA Author ManuscriptPublished NIH-PA Author Manuscript in final edited NIH-PA Author Manuscript form as: Nat Genet. 2012 September ; 44(9): 1040–1045. doi:10.1038/ng.2361. NMNAT1 mutations cause Leber congenital amaurosis Marni J Falk1,2,22, Qi Zhang3,4,22, Eiko Nakamaru-Ogiso5, Chitra Kannabiran6, Zoe Fonseca- Kelly3,4, Christina Chakarova7, Isabelle Audo8,9,10,11, Donna S Mackay7, Christina Zeitz8,9,10, Arundhati Dev Borman7,12, Magdalena Staniszewska3,4, Rachna Shukla6, Lakshmi Palavalli6, Saddek Mohand-Said8,9,10,11, Naushin H Waseem7, Subhadra Jalali6,13, Juan C Perin14, Emily Place1,3,4, Julian Ostrovsky1, Rui Xiao15, Shomi S Bhattacharya7,16, Mark Consugar3,4, Andrew R Webster7,12, José-Alain Sahel8,9,10,11,17,18, Anthony T Moore7,12,19, Eliot L Berson4, Qin Liu3,4, Xiaowu Gai20,21,23, and Eric A.
    [Show full text]