Path Integration, Continuous Attractors and Grid Cells ‘Path Integration’ in Mammals
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Grid Cells Are Ubiquitous in Neural Networks
Grid Cells Are Ubiquitous in Neural Networks Songlin Li1†, Yangdong Deng2*†, Zhihua Wang1 1 Department of Microelectronics and Nanoelectronics, Tsinghua University 2 School of Software, Tsinghua University * Corresponding author: Email [email protected] † The two authors contributed equally to this work. Abstract: Grid cells are believed to play an important role in both spatial and non-spatial cognition tasks. A recent study observed the emergence of grid cells in an LSTM for path integration. The connection between biological and artificial neural networks underlying the seemingly similarity, as well as the application domain of grid cells in deep neural networks (DNNs), expect further exploration. This work demonstrated that grid cells could be replicated in either pure vision based or vision guided path integration DNNs for navigation under a proper setting of training parameters. We also show that grid-like behaviors arise in feedforward DNNs for non-spatial tasks. Our findings support that the grid coding is an effective representation for both biological and artificial networks. Introduction: It has been long hypothesized that animals use a “cognitive map”1, namely, an internal knowledge representation to support intelligent behaviors. This proposal was later proved by neuroscience experiments on both spatial2,3 and non-spatial4,5 cognition tasks. Grid cells, which exhibit a spatial periodic firing pattern and thus constitute the hexagonal spatial representation as Fyhn et al has observed2, were discovered in the medial entorhinal cortex (MEC) of rodents2,3. Subsequent studies proposed models to characterize the behavior of grid cells in terms of spike-timing correlations6-8. The discovery of grid cells as well as the fact that different grid cells forms a multi-scale representation inspired the theory of vector-based navigation9. -
Activity Strength Within Optic Flow-Sensitive Cortical Regions Is Associated with Visual Path Integration Accuracy in Aged Adults
brain sciences Article Activity Strength within Optic Flow-Sensitive Cortical Regions Is Associated with Visual Path Integration Accuracy in Aged Adults Lauren Zajac 1,2,* and Ronald Killiany 1,2 1 Department of Anatomy & Neurobiology, Boston University School of Medicine, 72 East Concord Street (L 1004), Boston, MA 02118, USA; [email protected] 2 Center for Biomedical Imaging, Boston University School of Medicine, 650 Albany Street, Boston, MA 02118, USA * Correspondence: [email protected] Abstract: Spatial navigation is a cognitive skill fundamental to successful interaction with our envi- ronment, and aging is associated with weaknesses in this skill. Identifying mechanisms underlying individual differences in navigation ability in aged adults is important to understanding these age- related weaknesses. One understudied factor involved in spatial navigation is self-motion perception. Important to self-motion perception is optic flow–the global pattern of visual motion experienced while moving through our environment. A set of optic flow-sensitive (OF-sensitive) cortical regions was defined in a group of young (n = 29) and aged (n = 22) adults. Brain activity was measured in this set of OF-sensitive regions and control regions using functional magnetic resonance imaging while participants performed visual path integration (VPI) and turn counting (TC) tasks. Aged adults had stronger activity in RMT+ during both tasks compared to young adults. Stronger activity in the OF-sensitive regions LMT+ and RpVIP during VPI, not TC, was associated with greater VPI Citation: Zajac, L.; Killiany, R. accuracy in aged adults. The activity strength in these two OF-sensitive regions measured during Activity Strength within Optic VPI explained 42% of the variance in VPI task performance in aged adults. -
Marine Vehicles Localization Using Grid Cells for Path Integration
Marine Vehicles Localization Using Grid Cells for Path Integration Ignacio Carluchoa, Manuel F. Baileya, Mariano De Paulab, Corina Barbalataa [email protected], [email protected], mariano.depaula@fio.unicen.edu.ar, [email protected] a Department of Mechanical Engineering, Louisiana State University, Baton Rouge, USA b INTELYMEC Group, Centro de Investigaciones en F´ısica e Ingenier´ıa del Centro CIFICEN – UNICEN – CICpBA – CONICET, 7400 Olavarr´ıa, Argentina Abstract—Autonomous Underwater Vehicles (AUVs) are plat- forms used for research and exploration of marine environments. However, these types of vehicles face many challenges that hinder their widespread use in the industry. One of the main limitations is obtaining accurate position estimation, due to the lack of GPS signal underwater. This estimation is usually done with Kalman filters. However, new developments in the neuroscience field have shed light on the mechanisms by which mammals are able to obtain a reliable estimation of their current position based on external and internal motion cues. A new type of neuron, called Grid cells, has been shown to be part of path integration system in the brain. In this article, we show how grid cells can be used for obtaining a position estimation of underwater vehicles. The model of grid cells used requires only the linear velocities together with heading orientation and provides a reliable estimation of the vehicle’s position. We provide simulation results for an AUV which show the feasibility of our proposed methodology. Index Terms—Grid cells, Navigation, Neuro inspired agents, Autonomous underwater vehicles Fig. 1. A modified BlueROV2 used for experiments I. INTRODUCTION In recent years, the interest in exploring our oceans has that strongly correlates with the animal position in space [5]. -
Position–Theta-Phase Model of Hippocampal Place Cell Activity Applied to Quantification of Running Speed Modulation of Firing Rate
Position–theta-phase model of hippocampal place cell activity applied to quantification of running speed modulation of firing rate Kathryn McClaina,b,1, David Tingleyb, David J. Heegera,c,1, and György Buzsákia,b,1 aCenter for Neural Science, New York University, New York, NY 10003; bNeuroscience Institute, New York University, New York, NY 10016; and cDepartment of Psychology, New York University, New York, NY 10003 Edited by Terrence J. Sejnowski, Salk Institute for Biological Studies, La Jolla, CA, and approved November 18, 2019 (received for review July 24, 2019) Spiking activity of place cells in the hippocampus encodes the Another challenge in understanding this system is the dynamic animal’s position as it moves through an environment. Within a interaction between the rate code and phase code. As these codes cell’s place field, both the firing rate and the phase of spiking in combine, different formats of information are conveyed simulta- the local theta oscillation contain spatial information. We propose a neously in place cell spiking. The interaction can produce unin- – position theta-phase (PTP) model that captures the simultaneous tuitive, although entirely predictable, results in traditional analyses expression of the firing-rate code and theta-phase code in place cell of place cell activity. These practical challenges have hindered the spiking. This model parametrically characterizes place fields to com- pare across cells, time, and conditions; generates realistic place cell effort to explain variability in hippocampal firing rates. A com- simulation data; and conceptualizes a framework for principled hy- putational tool is needed that accounts for the well-established pothesis testing to identify additional features of place cell activity. -
Beta Oscillations and Hippocampal Place Cell Learning During
Beta Oscillations and Hippocampal Place Cell Learning during Exploration of Novel Environments Stephen Grossberg1 1Department of Cognitive and Neural Systems Center for Adaptive Systems, and Center of Excellence for Learning in Education, Science and Technology Boston University 677 Beacon St Boston, Massachusetts 02215 [email protected] Telephone: 617-353-7858/7 Fax: 617-353-7755 http://www.cns.bu.edu/~steve July 29, 2008 Revised: November 24, 2008 CAS/CNS-TR-08-003 Hippocampus, in press Running head: Beta Oscillations during Hippocampal Place Cell Learning Corresponding author: Stephen Grossberg, [email protected] Keywords: grid cells, category learning, spatial navigation, adaptive resonance theory, entorhinal cortex 1 Abstract The functional role of synchronous oscillations in various brain processes has attracted a lot of experimental interest. Berke et al. (2008) reported beta oscillations during the learning of hippocampal place cell receptive fields in novel environments. Such place cell selectivity can develop within seconds to minutes, and can remain stable for months. Paradoxically, beta power was very low during the first lap of exploration, grew to full strength as a mouse traversed a lap for the second and third times, and became low again after the first two minutes of exploration. Beta oscillation power also correlated with the rate at which place cells became spatially selective, and not with theta oscillations. These beta oscillation properties are explained by a neural model of how place cell receptive fields may be learned and stably remembered as spatially selective categories due to feedback interactions between entorhinal cortex and hippocampus. This explanation allows the learning of place cell receptive fields to be understood as a variation of category learning processes that take place in many brain systems, and challenges hippocampal models in which beta oscillations and place cell stability cannot be explained. -
Emergence of Grid-Like Representations by Training
Published as a conference paper at ICLR 2018 EMERGENCE OF GRID-LIKE REPRESENTATIONS BY TRAINING RECURRENT NEURAL NETWORKS TO PERFORM SPATIAL LOCALIZATION Christopher J. Cueva,∗ Xue-Xin Wei∗ Columbia University New York, NY 10027, USA fccueva,[email protected] ABSTRACT Decades of research on the neural code underlying spatial navigation have re- vealed a diverse set of neural response properties. The Entorhinal Cortex (EC) of the mammalian brain contains a rich set of spatial correlates, including grid cells which encode space using tessellating patterns. However, the mechanisms and functional significance of these spatial representations remain largely mysterious. As a new way to understand these neural representations, we trained recurrent neural networks (RNNs) to perform navigation tasks in 2D arenas based on veloc- ity inputs. Surprisingly, we find that grid-like spatial response patterns emerge in trained networks, along with units that exhibit other spatial correlates, including border cells and band-like cells. All these different functional types of neurons have been observed experimentally. The order of the emergence of grid-like and border cells is also consistent with observations from developmental studies. To- gether, our results suggest that grid cells, border cells and others as observed in EC may be a natural solution for representing space efficiently given the predominant recurrent connections in the neural circuits. 1 INTRODUCTION Understanding the neural code in the brain has long been driven by studying feed-forward -
Models of Grid Cells and Theta Oscillations
BRIEF COMMUNICATIONS ARISING Models of grid cells and theta oscillations ARISING FROM M. M.Yartsev, M. P. Witter & N. Ulanovsky Nature 479, 103–107 (2011) Grid cells recorded in the medial entorhinal cortex (MEC) of freely and in putative velocity-controlled oscillatory inputs identified as inter- moving rodents show a markedly regular spatial firing pattern whose neurons within the septohippocampal circuit7. underlying mechanism has been the subject of intense interest. Yartsev et al.1 recorded the firing of grid cells from bats trained to Yartsev et al.1 report that the firing of grid cells in crawling bats does crawl within the recording environment, a behaviour that they per- not show theta rhythmicity ‘‘causally disproving a major class of form very slowly (a mean speed of 3.7 cm s21 versus 17.6 cm s21 in computational models’’ of grid cell firing that rely on oscillatory our rat data), often stopping entirely (supplementary figure 11 in interference2–7. However, their data may be consistent with these ref. 1). The authors found grid cells with very low firing rates (a mean models, with the apparent lack of theta rhythmicity reflecting slow peak rate of 0.56 Hz versus 5.14 Hz in our data) and little significant movement speeds and low firing rates. Thus, the conclusion of theta modulation. However, matching movement speed is important Yartsev et al. is not supported by their data. for comparisons involving theta. At low speeds movement-related In oscillatory interference models, path integration is performed by theta rhythmicity is strongly attenuated12 and the need for path velocity-dependent variation in the frequencies of theta-band oscilla- integration is reduced. -
Resonating Neurons Stabilize Heterogeneous Grid-Cell Networks
bioRxiv preprint doi: https://doi.org/10.1101/2020.12.10.419200; this version posted December 11, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Resonating neurons stabilize heterogeneous grid-cell networks 2 3 Divyansh Mittal and Rishikesh Narayanan* 4 5 Cellular Neurophysiology Laboratory, Molecular Biophysics Unit, Indian Institute of 6 Science, Bangalore, India. 7 8 *Corresponding Author 9 10 Rishikesh Narayanan, Ph.D. 11 Molecular Biophysics Unit 12 Indian Institute of Science 13 Bangalore 560 012, India. 14 15 e-mail: [email protected] 16 Phone: +91-80-22933372 17 Fax: +91-80-23600535 18 Number of words: 250 (abstract), 120 (significance statement) 19 20 Abbreviated title: Resonating neurons stabilize heterogeneous networks 21 22 Keywords: grid cells, entorhinal cortex, continuous attractor network, resonance, 23 heterogeneities 24 25 Author contributions 26 D. M. and R. N. designed experiments; D. M. performed experiments and carried out data 27 analysis; D. M. and R. N. co-wrote the paper. 28 29 Competing financial interests 30 The authors declare no conflict of interest. 31 32 Acknowledgments 33 This work was supported by the Wellcome Trust-DBT India Alliance (Senior fellowship to 34 RN; IA/S/16/2/502727), Human Frontier Science Program (HFSP) Organization (RN), the 35 Department of Biotechnology through the DBT-IISc partnership program (RN), the Revati 36 and Satya Nadham Atluri Chair Professorship (RN), and the Ministry of Human Resource 37 Development (RN & DM). The authors thank Dr. Poonam Mishra, Dr. -
Behavioral Strategies, Sensory Cues, and Brain Mechanisms
Intro to Neuroscience: Behavioral Neuroscience Animal Navigation: Behavioral strategies, sensory cues, and brain mechanisms Nachum Ulanovsky Department of Neurobiology, Weizmann Institute of Science Outline of today’s lecture • Introduction: Feats of animal navigation • Navigational strategies: • Beaconing • Route following • Path integration • Map and Compass / Cognitive Map • Sensory cues for navigation: • Compass mechanisms • Map mechanisms • Brain mechanisms of Navigation (brief introduction) • Summary Outline of today’s lecture • Introduction: Feats of animal navigation • Navigational strategies: • Beaconing • Route following • Path integration • Map and Compass / Cognitive Map • Sensory cues for navigation: • Compass mechanisms • Map mechanisms • Brain mechanisms of Navigation (brief introduction) • Summary Shearwater migration across the pacific יסעור Population data from 19 birds 3 pairs of birds Recaptured at their breeding Shaffer et al. PNAS 103:12799-12802 (2006) grounds in New Zealand Some other famous examples • Wandering Albatross: finding a tiny island in the vast ocean • Salmon: returning to the river of birth after years in the ocean • Sea Turtles • Monarch Butterflies • Spiny Lobsters • … And many other examples (some of them we will see later) Mammals can also do it… Medium-scale navigation: Egyptian fruit bats navigating to an individual tree Tsoar, Nathan, Bartan, Vyssotski, Dell’Omo & Ulanovsky (PNAS, 2011) GPS movie: Bat 079 A typical example of a full night flight of an individual bat released @ cave Bat roost Foraging tree 5 Km Characteristics of the bats’ commuting flights: • Long-distance flights (often > 15 km one-way) • Very straight flights (straightness index > 0.9 for almost all bats) • Very fast (typically 30–40 km/hr, and up to 63 km/hr) • Very high (typically 100–200 meters, and up to 643 m) • Bats returned to the same individual tree night after night, for many nights tree cave Tsoar, Nathan, Bartan, With Vyssotski, Dell’Omo & Y. -
Spatial Linear Navigation: Is Vision Necessary? Isabelle Israël, Aurore Capelli, Anne-Emmanuelle Priot, I
Spatial linear navigation: Is vision necessary? Isabelle Israël, Aurore Capelli, Anne-Emmanuelle Priot, I. Giannopulu To cite this version: Isabelle Israël, Aurore Capelli, Anne-Emmanuelle Priot, I. Giannopulu. Spatial linear navigation: Is vision necessary?. Neuroscience Letters, Elsevier, 2013, 554, pp.34-38. 10.1016/j.neulet.2013.08.060. hal-02395669 HAL Id: hal-02395669 https://hal.archives-ouvertes.fr/hal-02395669 Submitted on 5 Dec 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Elsevier Editorial System(tm) for Neuroscience Letters Manuscript Draft Manuscript Number: Title: Spatial linear navigation : is vision necessary ? Article Type: Research Paper Keywords: Path integration; self-motion perception; multisensory integration Corresponding Author: Dr. Isabelle Israel, PhD Corresponding Author's Institution: CNRS First Author: Isabelle ISRAEL, PhD Order of Authors: Isabelle ISRAEL, PhD; Aurore CAPELLI, PhD; Anne-Emmanuelle PRIOT, MD, PhD; Irini GIANNOPULU, PhD, D.Sc. Abstract: In order to analyze spatial linear navigation through a task of self-controlled reproduction, healthy participants were passively transported on a mobile robot at constant velocity, and then had to reproduce the imposed distance of 2 to 8 m in two conditions: "with vision" and "without vision". -
Models of Grid Cells and Theta Oscillations
Publisher: NPG; Journal: Nature: Nature; Article Type: BCA DOI: 10.1038/nature11276 Models of grid cells and theta oscillations ARISING FROM M. M.Yartsev, M. P. Witter & N. Ulanovsky Nature 479, 103–107 (2011) Grid cells recorded in the medial entorhinal cortex (MEC) of freely moving rodents show a strikingly regular spatial firing pattern whose underlying mechanism has been the subject of intense interest. Yartsev et al.1 report that the firing of grid cells in crawling bats does not show theta rhythmicity “causally disproving a major class of computational models” of grid cell firing that rely on oscillatory interference2–7. However, their data may be consistent with these models, with the apparent lack of theta rhythmicity reflecting slow movement speeds and low firing rates. Thus, Yartsev et al.’s conclusion is not supported by their data. In oscillatory interference models, path integration is performed by velocity- dependent variation in the frequencies of theta-band oscillations, which combine to generate the grid-cell pattern2–4,6,7. In addition, learned associations to environmental sensory inputs (possibly mediated by place cells) ensure that grids are spatially stable over time and are sufficient to maintain firing in familiar environments2,3,8. In rats, the majority of grid cells show theta-modulated firing9,10, and the model predicts specific relationships between modulation frequency, running velocity and grid scale4, which have been verified in grid cells11 and in putative velocity-controlled oscillatory inputs identified as interneurons within the septohippocampal circuit7. Yartsev et al.1 recorded the firing of grid cells from bats trained to crawl within the recording environment, a behaviour that they perform very slowly (a mean speed of 3.7 cm s−1 versus 17.6 cm s−1 in our rat data), often stopping entirely (supplementary figure 11 in ref. -
Path Integration Deficits During Linear Locomotion After Human Medial Temporal Lobectomy
Path Integration Deficits during Linear Locomotion after Human Medial Temporal Lobectomy John W.Philbeck 1,Marlene Behrmann 2,Lucien Levy 3, Samuel J.Potolicchio 3,andAnthony J.Caputy 3 Abstract & Animalnavigation studies have implicated structures inand both adecrease inthe consistency ofpath integration and a around the hippocampal formation as crucialin performing systematic underregistration oflinear displacement (and/or path integration (amethod ofdetermining one’s position by velocity) during walking.Moreover, the deficits were observable monitoring internally generated self-motion signals). Less is even when there were virtually no angular acceleration known about the role ofthese structures forhuman path vestibular signals. Theresults suggest that structures inthe integration. We tested path integration inpatients whohad medial temporal lobe participate inhuman path integration undergone left orright medial temporal lobectomy as therapy when individuals walkalong linearpaths and that thisis so to forepilepsy. Thisprocedure removed approximately 50% ofthe agreater extent inright hemisphere structures than left. anterior portion ofthe hippocampus, as wellas the amygdala Thisinformation is relevant forfuture research investigating and lateral temporal lobe. Participants attempted to walk the neural substrates ofnavigation, not only inhumans without vision to apreviously viewed target 2–6 mdistant. (e.g.,functional neuroimaging and neuropsychological studies), Patients withright, but not left,hemisphere lesions exhibited but also