The Historical Biogeography of Coral Reef Fishes: Global Patterns Of
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Field Guide to the Nonindigenous Marine Fishes of Florida
Field Guide to the Nonindigenous Marine Fishes of Florida Schofield, P. J., J. A. Morris, Jr. and L. Akins Mention of trade names or commercial products does not constitute endorsement or recommendation for their use by the United States goverment. Pamela J. Schofield, Ph.D. U.S. Geological Survey Florida Integrated Science Center 7920 NW 71st Street Gainesville, FL 32653 [email protected] James A. Morris, Jr., Ph.D. National Oceanic and Atmospheric Administration National Ocean Service National Centers for Coastal Ocean Science Center for Coastal Fisheries and Habitat Research 101 Pivers Island Road Beaufort, NC 28516 [email protected] Lad Akins Reef Environmental Education Foundation (REEF) 98300 Overseas Highway Key Largo, FL 33037 [email protected] Suggested Citation: Schofield, P. J., J. A. Morris, Jr. and L. Akins. 2009. Field Guide to Nonindigenous Marine Fishes of Florida. NOAA Technical Memorandum NOS NCCOS 92. Field Guide to Nonindigenous Marine Fishes of Florida Pamela J. Schofield, Ph.D. James A. Morris, Jr., Ph.D. Lad Akins NOAA, National Ocean Service National Centers for Coastal Ocean Science NOAA Technical Memorandum NOS NCCOS 92. September 2009 United States Department of National Oceanic and National Ocean Service Commerce Atmospheric Administration Gary F. Locke Jane Lubchenco John H. Dunnigan Secretary Administrator Assistant Administrator Table of Contents Introduction ................................................................................................ i Methods .....................................................................................................ii -
Phylogeny of the Damselfishes (Pomacentridae) and Patterns of Asymmetrical Diversification in Body Size and Feeding Ecology
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.07.430149; this version posted February 8, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Phylogeny of the damselfishes (Pomacentridae) and patterns of asymmetrical diversification in body size and feeding ecology Charlene L. McCord a, W. James Cooper b, Chloe M. Nash c, d & Mark W. Westneat c, d a California State University Dominguez Hills, College of Natural and Behavioral Sciences, 1000 E. Victoria Street, Carson, CA 90747 b Western Washington University, Department of Biology and Program in Marine and Coastal Science, 516 High Street, Bellingham, WA 98225 c University of Chicago, Department of Organismal Biology and Anatomy, and Committee on Evolutionary Biology, 1027 E. 57th St, Chicago IL, 60637, USA d Field Museum of Natural History, Division of Fishes, 1400 S. Lake Shore Dr., Chicago, IL 60605 Corresponding author: Mark W. Westneat [email protected] Journal: PLoS One Keywords: Pomacentridae, phylogenetics, body size, diversification, evolution, ecotype Abstract The damselfishes (family Pomacentridae) inhabit near-shore communities in tropical and temperature oceans as one of the major lineages with ecological and economic importance for coral reef fish assemblages. Our understanding of their evolutionary ecology, morphology and function has often been advanced by increasingly detailed and accurate molecular phylogenies. Here we present the next stage of multi-locus, molecular phylogenetics for the group based on analysis of 12 nuclear and mitochondrial gene sequences from 330 of the 422 damselfish species. -
Sharkcam Fishes
SharkCam Fishes A Guide to Nekton at Frying Pan Tower By Erin J. Burge, Christopher E. O’Brien, and jon-newbie 1 Table of Contents Identification Images Species Profiles Additional Info Index Trevor Mendelow, designer of SharkCam, on August 31, 2014, the day of the original SharkCam installation. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 5th edition by Erin J. Burge, Christopher E. O’Brien, and jon-newbie is licensed under the Creative Commons Attribution-Noncommercial 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc/4.0/. For questions related to this guide or its usage contact Erin Burge. The suggested citation for this guide is: Burge EJ, CE O’Brien and jon-newbie. 2020. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 5th edition. Los Angeles: Explore.org Ocean Frontiers. 201 pp. Available online http://explore.org/live-cams/player/shark-cam. Guide version 5.0. 24 February 2020. 2 Table of Contents Identification Images Species Profiles Additional Info Index TABLE OF CONTENTS SILVERY FISHES (23) ........................... 47 African Pompano ......................................... 48 FOREWORD AND INTRODUCTION .............. 6 Crevalle Jack ................................................. 49 IDENTIFICATION IMAGES ...................... 10 Permit .......................................................... 50 Sharks and Rays ........................................ 10 Almaco Jack ................................................. 51 Illustrations of SharkCam -
Pomacentridae): Structural and Expression Variation in Opsin Genes
Molecular Ecology (2017) 26, 1323–1342 doi: 10.1111/mec.13968 Why UV vision and red vision are important for damselfish (Pomacentridae): structural and expression variation in opsin genes SARA M. STIEB,*† FABIO CORTESI,*† LORENZ SUEESS,* KAREN L. CARLETON,‡ WALTER SALZBURGER† and N. J. MARSHALL* *Sensory Neurobiology Group, Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia, †Zoological Institute, University of Basel, Basel 4051, Switzerland, ‡Department of Biology, The University of Maryland, College Park, MD 20742, USA Abstract Coral reefs belong to the most diverse ecosystems on our planet. The diversity in col- oration and lifestyles of coral reef fishes makes them a particularly promising system to study the role of visual communication and adaptation. Here, we investigated the evolution of visual pigment genes (opsins) in damselfish (Pomacentridae) and exam- ined whether structural and expression variation of opsins can be linked to ecology. Using DNA sequence data of a phylogenetically representative set of 31 damselfish species, we show that all but one visual opsin are evolving under positive selection. In addition, selection on opsin tuning sites, including cases of divergent, parallel, conver- gent and reversed evolution, has been strong throughout the radiation of damselfish, emphasizing the importance of visual tuning for this group. The highest functional variation in opsin protein sequences was observed in the short- followed by the long- wavelength end of the visual spectrum. Comparative gene expression analyses of a subset of the same species revealed that with SWS1, RH2B and RH2A always being expressed, damselfish use an overall short-wavelength shifted expression profile. Inter- estingly, not only did all species express SWS1 – a UV-sensitive opsin – and possess UV-transmitting lenses, most species also feature UV-reflective body parts. -
Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes
Old Dominion University ODU Digital Commons Biological Sciences Theses & Dissertations Biological Sciences Summer 2016 Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes Christi Linardich Old Dominion University, [email protected] Follow this and additional works at: https://digitalcommons.odu.edu/biology_etds Part of the Biodiversity Commons, Biology Commons, Environmental Health and Protection Commons, and the Marine Biology Commons Recommended Citation Linardich, Christi. "Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes" (2016). Master of Science (MS), Thesis, Biological Sciences, Old Dominion University, DOI: 10.25777/hydh-jp82 https://digitalcommons.odu.edu/biology_etds/13 This Thesis is brought to you for free and open access by the Biological Sciences at ODU Digital Commons. It has been accepted for inclusion in Biological Sciences Theses & Dissertations by an authorized administrator of ODU Digital Commons. For more information, please contact [email protected]. HOTSPOTS, EXTINCTION RISK AND CONSERVATION PRIORITIES OF GREATER CARIBBEAN AND GULF OF MEXICO MARINE BONY SHOREFISHES by Christi Linardich B.A. December 2006, Florida Gulf Coast University A Thesis Submitted to the Faculty of Old Dominion University in Partial Fulfillment of the Requirements for the Degree of MASTER OF SCIENCE BIOLOGY OLD DOMINION UNIVERSITY August 2016 Approved by: Kent E. Carpenter (Advisor) Beth Polidoro (Member) Holly Gaff (Member) ABSTRACT HOTSPOTS, EXTINCTION RISK AND CONSERVATION PRIORITIES OF GREATER CARIBBEAN AND GULF OF MEXICO MARINE BONY SHOREFISHES Christi Linardich Old Dominion University, 2016 Advisor: Dr. Kent E. Carpenter Understanding the status of species is important for allocation of resources to redress biodiversity loss. -
Wainwright-Et-Al.-2012.Pdf
Copyedited by: ES MANUSCRIPT CATEGORY: Article Syst. Biol. 61(6):1001–1027, 2012 © The Author(s) 2012. Published by Oxford University Press, on behalf of the Society of Systematic Biologists. All rights reserved. For Permissions, please email: [email protected] DOI:10.1093/sysbio/sys060 Advance Access publication on June 27, 2012 The Evolution of Pharyngognathy: A Phylogenetic and Functional Appraisal of the Pharyngeal Jaw Key Innovation in Labroid Fishes and Beyond ,∗ PETER C. WAINWRIGHT1 ,W.LEO SMITH2,SAMANTHA A. PRICE1,KEVIN L. TANG3,JOHN S. SPARKS4,LARA A. FERRY5, , KRISTEN L. KUHN6 7,RON I. EYTAN6, AND THOMAS J. NEAR6 1Department of Evolution and Ecology, University of California, One Shields Avenue, Davis, CA 95616; 2Department of Zoology, Field Museum of Natural History, 1400 South Lake Shore Drive, Chicago, IL 60605; 3Department of Biology, University of Michigan-Flint, Flint, MI 48502; 4Department of Ichthyology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024; 5Division of Mathematical and Natural Sciences, Arizona State University, Phoenix, AZ 85069; 6Department of Ecology and Evolution, Peabody Museum of Natural History, Yale University, New Haven, CT 06520; and 7USDA-ARS, Beneficial Insects Introduction Research Unit, 501 South Chapel Street, Newark, DE 19713, USA; ∗ Correspondence to be sent to: Department of Evolution & Ecology, University of California, One Shields Avenue, Davis, CA 95616, USA; E-mail: [email protected]. Received 22 September 2011; reviews returned 30 November 2011; accepted 22 June 2012 Associate Editor: Luke Harmon Abstract.—The perciform group Labroidei includes approximately 2600 species and comprises some of the most diverse and successful lineages of teleost fishes. -
Andrew David Dorka Cobián Rojas Felicia Drummond Alain García Rodríguez
CUBA’S MESOPHOTIC CORAL REEFS Fish Photo Identification Guide ANDREW DAVID DORKA COBIÁN ROJAS FELICIA DRUMMOND ALAIN GARCÍA RODRÍGUEZ Edited by: John K. Reed Stephanie Farrington CUBA’S MESOPHOTIC CORAL REEFS Fish Photo Identification Guide ANDREW DAVID DORKA COBIÁN ROJAS FELICIA DRUMMOND ALAIN GARCÍA RODRÍGUEZ Edited by: John K. Reed Stephanie Farrington ACKNOWLEDGMENTS This research was supported by the NOAA Office of Ocean Exploration and Research under award number NA14OAR4320260 to the Cooperative Institute for Ocean Exploration, Research and Technology (CIOERT) at Harbor Branch Oceanographic Institute-Florida Atlantic University (HBOI-FAU), and by the NOAA Pacific Marine Environmental Laboratory under award number NA150AR4320064 to the Cooperative Institute for Marine and Atmospheric Studies (CIMAS) at the University of Miami. This expedition was conducted in support of the Joint Statement between the United States of America and the Republic of Cuba on Cooperation on Environmental Protection (November 24, 2015) and the Memorandum of Understanding between the United States National Oceanic and Atmospheric Administration, the U.S. National Park Service, and Cuba’s National Center for Protected Areas. We give special thanks to Carlos Díaz Maza (Director of the National Center of Protected Areas) and Ulises Fernández Gomez (International Relations Officer, Ministry of Science, Technology and Environment; CITMA) for assistance in securing the necessary permits to conduct the expedition and for their tremendous hospitality and logistical support in Cuba. We thank the Captain and crew of the University of Miami R/V F.G. Walton Smith and ROV operators Lance Horn and Jason White, University of North Carolina at Wilmington (UNCW-CIOERT), Undersea Vehicle Program for their excellent work at sea during the expedition. -
Halichoeres Bivittatus (Bloch, 1791) Frequent Synonyms / Misidentifications: None / Halichoeres Maculipinna (Müller and Troschel, 1848)
click for previous page 1710 Bony Fishes Halichoeres bivittatus (Bloch, 1791) Frequent synonyms / misidentifications: None / Halichoeres maculipinna (Müller and Troschel, 1848). FAO names: En - Slippery dick. Diagnostic characters: Body slender, depth 3.3 to 4.6 in standard length.Head rounded and scaleless;snout blunt; 1 pair of enlarged canine teeth at front of upper jaw and a small canine posteriorly near corner of mouth; 2 pairs of enlarged canine teeth anteriorly in lower jaw. Gill rakers on first arch 16 to 19. Dorsal fin continu- ous, with 9 spines and 11 soft rays;anal fin with 3 spines and 9 soft rays;caudal fin rounded;pectoral-fin rays 13. Lateral line continuous with an abrupt downward bend beneath soft portion of dorsal fin, and 27 pored scales. Colour: body colour variable, primarily pale green to white ground colour with a dark midbody stripe, a second lower stripe often present but less distinct; small green and yellow bicoloured spot above pectoral fin; pinkish or orange markings on the head, these sometimes outlined with pale blue; in adults, the tips of the cau- dal-fin lobes are black. Size: Maximum length to about 20 cm. Habitat, biology, and fisheries: Inhabits a di- versity of habitats from coral reef to rocky reef and seagrass beds. Any disturbance of the bot- tom, such as the overturning of a rock will attract a swarm of them, all hoping to find food uncov- ered. Feeds omnivorously on crabs, fishes, sea urchins, polychaetes, molluscs, and brittle stars. This species is not marketed for food, but is com- monly seen in the aquarium trade. -
Cruise Report W-37 R/V Westward Draft Copy
CRUISE REPORT W-37 Scientific Activities San Juan - Miami November 30, 1977 - January 11, 1978 R/V WESTWARD Sea Education Association Woods Hole, Massachusetts DRAFT COPY " (l Contents Summary Introduction 1 Itinerary 2 Cruise track 3 Ship's complement 5 Academic Program 7 Reeearch Activities Cooperatiye Programs 12 Cooperative Ship Weather Observation Program 12 Shark Tagging 12 Collection of shipworms from floating driftwood 12 Weather Recording and Forecasting on W-37 (Burnham) 14 Ocean Thermal Energy Conversion 15 In-House Programs, W-37 1. Observations of numbers and behavior of marine mammals in their winter mating/calving grounds on N~vidad Bank and the relationship of marine mammals to their environment Cetacean Behavior (Postman) 16 Cetacean play behavior (Guild) 16 Krill density on Navidad Banks (Eddings) 19 2. Distribution and migration of leptocephalus larvae of the American eel, Anguilla rostrata Distribution and abundance of lepto cephalus larvae with particular emphasis on those of the American eel, Anguilla rostrata (Afflixio) 19 ii 3. Avifauna Observations Bifd Studies (Gordon) 22 4. Systematics, distribution and ecology of midwater fauna Zoogeography of the midwater fish family, Myctophidae (Korn) 22 Scarlet prawns and the deep scattering layer (Boyle) 27 pH and bioluminescence (Cook) 29 Vertical migration of zooplankton (Russell) 30 5. Neuston studies Tarballs and encrustation on Sargassum weed (Sloatman) 31 Distribution of tarballs in relation to proximity of shipping lanes (Round) 31 Biology of the Sargassum fish, -
Reef-Associated Fishes from the Offshore Reefs of Western Campeche Bank, Mexico, with a Discussion of Mangroves and Seagrass Beds As Nursery Habitats
A peer-reviewed open-access journal ZooKeys 843:Reef-associated 71–115 (2019) fishes from the offshore reefs of western Campeche Bank, Mexico, with... 71 doi: 10.3897/zookeys.843.33873 RESEARCH ARTICLE http://zookeys.pensoft.net Launched to accelerate biodiversity research Reef-associated fishes from the offshore reefs of western Campeche Bank, Mexico, with a discussion of mangroves and seagrass beds as nursery habitats D. Ross Robertson1, Omar Domínguez-Dominguez2, Yareli Margarita López Aroyo2, Rigoberto Moreno Mendoza3, Nuno Simões3,4,5 1 Smithsonian Tropical Research Institute, Balboa, Panamá 2 Laboratorio de Biologia Acuatica, Facultad de Biologia, Universidad Michoacana de San Nicolás de Hidalgo, Morelia, Michoacan, Mexico 3 Unidad Multidisciplinaria de Docencia e Investigación Sisal (UMDI-SISAL), Facultad de Ciencias, Universidad Na- cional Autónoma de México, Puerto de Abrigo s/n, Sisal, CP 97356 Yucatán, Mexico 4 International Chair for Coastal and Marine Studies, Harte Research Institute for Gulf of Mexico Studies, Texas A and M Univer- sity – Corpus Christi,Texas, USA 5 Laboratorio Nacional de Resiliencia Costera, Laboratorios Nacionales, CONACYT, Mexico Corresponding author: D. Ross Robertson ([email protected]) Academic editor: Kyle Piller | Received 14 February 2019 | Accepted 29 March 2019 | Published 9 May 2019 http://zoobank.org/CC93CC69-4682-4B45-8504-4C354B694C22 Citation: Robertson DR, Domínguez-Dominguez O, Aroyo YML, Mendoza RM, Simões N (2019) Reef-associated fishes from the offshore reefs of western Campeche Bank, Mexico, with a discussion of mangroves and seagrass beds as nursery habitats. ZooKeys 843: 71–115. https://doi.org/10.3897/zookeys.843.33873 Abstract A series of small emergent coral reefs and shallow, submerged coralliferous banks are scattered along the western edge of Campeche Bank (southwest Gulf of Mexico), 150–200 km offshore from the Yucatán Peninsula, Mexico. -
The Taxonomy and Biology of Fishes of the Genus Parapercis (Teleostei: Mugiloididae) in Great Barrier Reef Waters
ResearchOnline@JCU This file is part of the following reference: Stroud, Gregory John (1982) The taxonomy and biology of fishes of the genus Parapercis (Teleostei: Mugiloididae) in Great Barrier Reef waters. PhD thesis, James Cook University. Access to this file is available from: http://researchonline.jcu.edu.au/33041/ If you believe that this work constitutes a copyright infringement, please contact [email protected] and quote http://researchonline.jcu.edu.au/33041/ The taxonomy and biology of fishes of the genus (Teleostei: Mugiloididae) in Great Barrier Reef waters Thesis submitted by Gregory John Stroud BSc (Hons) (Mona2h) in June 1982 for the degree of Doctor of Philosophy in the Department of Marine Biology at the James Cook University of North Queensland RESUBMISS ION This thesis was lodged for resubmission on September 6, 1984 after certain modifications suggested by the examiners had been carried out G.J. Stroud ABSTRACT This study was initiated as an investigation into the taxonomy and biology of fishes of the inugiloidid genus Pa/Lctpe/LCL6 from the Great Barrier Reef Province. Nine species of JLctpeXcL6 were found to inhabit Great Barrier Reef waters: PW.cLpe'Lci4 yfLnctLeLt, P. heXOphAamct, P. aephcopanetw&, P. cahjuvta, P. xanthozona., P. nebweo4a., P. diptospitus, P. 4nydeL, plus one undescribed species. Detailed descriptions and a key to these species are presented. The habitats in which PaAa'peAcZ5 are most commonly encountered and the pattern of species occupancy within each of these habitats are described along with seasonal patterns of abundance. The interrelationships between the morphology of the alimentary tract, the food taken, and feeding behaviour were investigated. -
Baseline Multispecies Coral Reef Fish Stock Assessment for the Dry Tortugas
NOAA Technical Memorandum NMFS-SEFSC-487 Baseline Multispecies Coral Reef Fish Stock Assessment for the Dry Tortugas Jerald S. Ault, Steven G. Smith, Geoffrey A. Meester, Jiangang Luo, James A. Bohnsack, and Steven L. Miller U.S. Department of Commerce National Oceanic and Atmospheric Administration National Marine Fisheries Service Southeast Fisheries Science Center 75 Virginia Beach Drive Miami, Florida 33149 August 2002 NOAA Technical Memorandum NMFS-SEFSC-487 Baseline Multispecies Coral Reef Fish Stock Assessment for the Dry Tortugas Jerald S. Ault 1, Steven G. Smith 1, Geoffrey A. Meester 1, Jiangang Luo 1, James A. Bohnsack 2 , and Steven L. Miller3 with significant contributions by Douglas E. Harper2, Dione W. Swanson3, Mark Chiappone3, Erik C. Franklin1, David B. McClellan2, Peter Fischel2, and Thomas W. Schmidt4 _____________________________ U.S. DEPARTMENT OF COMMERCE Donald L. Evans, Secretary National Oceanic and Atmospheric Administration Conrad C. Lautenbacher, Jr., Under Secretary for Oceans and Atmosphere National Marine Fisheries Service William T. Hogarth, Assistant Administrator for Fisheries August 2002 This technical memorandum series is used for documentation and timely communication of preliminary results, interim reports, or special purpose information. Although the memoranda are not subject to complete formal review, editorial control, or detailed editing, they are expected to reflect sound professional work. 1 University of Miami, Rosenstiel School of Marine and Atmospheric Sciences, Miami, FL 2 NOAA/Fisheries Southeast Fisheries Science Center, Miami, FL 3 National Undersea Research Center, Key Largo, FL 4 National Park Service, Homestead, FL NOTICE The National Marine Fisheries Service (NMFS) does not approve, recommend, or endorse any proprietary product or material mentioned in this publication.