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Implications in Parkinson's Disease
Journal of Clinical Medicine Review Lysosomal Ceramide Metabolism Disorders: Implications in Parkinson’s Disease Silvia Paciotti 1,2 , Elisabetta Albi 3 , Lucilla Parnetti 1 and Tommaso Beccari 3,* 1 Laboratory of Clinical Neurochemistry, Department of Medicine, University of Perugia, Sant’Andrea delle Fratte, 06132 Perugia, Italy; [email protected] (S.P.); [email protected] (L.P.) 2 Section of Physiology and Biochemistry, Department of Experimental Medicine, University of Perugia, Sant’Andrea delle Fratte, 06132 Perugia, Italy 3 Department of Pharmaceutical Sciences, University of Perugia, Via Fabretti, 06123 Perugia, Italy; [email protected] * Correspondence: [email protected] Received: 29 January 2020; Accepted: 20 February 2020; Published: 21 February 2020 Abstract: Ceramides are a family of bioactive lipids belonging to the class of sphingolipids. Sphingolipidoses are a group of inherited genetic diseases characterized by the unmetabolized sphingolipids and the consequent reduction of ceramide pool in lysosomes. Sphingolipidoses include several disorders as Sandhoff disease, Fabry disease, Gaucher disease, metachromatic leukodystrophy, Krabbe disease, Niemann Pick disease, Farber disease, and GM2 gangliosidosis. In sphingolipidosis, lysosomal lipid storage occurs in both the central nervous system and visceral tissues, and central nervous system pathology is a common hallmark for all of them. Parkinson’s disease, the most common neurodegenerative movement disorder, is characterized by the accumulation and aggregation of misfolded α-synuclein that seem associated to some lysosomal disorders, in particular Gaucher disease. This review provides evidence into the role of ceramide metabolism in the pathophysiology of lysosomes, highlighting the more recent findings on its involvement in Parkinson’s disease. Keywords: ceramide metabolism; Parkinson’s disease; α-synuclein; GBA; GLA; HEX A-B; GALC; ASAH1; SMPD1; ARSA * Correspondence [email protected] 1. -
Mannosidases Are the Putative Catabolic Enzymes Which
THE CHARACTERIZATION OF A NOVEL HUMAN CORE-SPECIFIC LYSOSOMAL α1-6MANNOSIDASE INVOLVED IN N-GLYCAN CATABOLISM by CHAEHO PARK (Under the Direction of Kelley W. Moremen) ABSTRACT In humans and rodents lysosomal catabolism of Man3GlcNAc2 core N-glycan structures results from the concerted actions of exoglycosidases including the broad specificity lysosomal α- mannosidase (LysMan), a core-specific α1-6mannosidase, and β-mannosidase, as well as the core chitobiose cleavage by an di-N-acetylchitobiase. In ungulates and carnivora, both the chitobiase and the α1-6mannosidase enzyme activities are absent suggesting a co-regulation of the two enzymes. We describe here the cloning, expression, purification and characterization of the human core-specific α1-6mannosidase with similarity to members of the glycosylhydrolase family 38. The recombinant enzyme had a pH optimum of 4.0, was potently inhibited by swainsonine and 1,4-dideoxy1,4-imino-D-mannitol, and was stimulated by Co+2. NMR-based time course substrate specificity studies comparing the α1-6mannosidase with human LysMan revealed that the former enzyme selectively cleaved the α1-6mannose residue from Man3GlcNAc, but not Man3GlcNAc2 or other larger high mannose structures, indicating the requirement for chitobiase action prior to α1-6mannosidase cleavage. In contrast, LysMan cleaved all of the α-linked mannose residues from Man9-5GlcNAc2, Man3GlcNAc2, or Man3GlcNAc structures except the core α1-6mannose residue. Transcripts encoding the α1-6mannosidase were ubiquitously expressed in human tissues and expressed sequence tag searches in various mammalian species demonstrated a similar distribution in species-specific expression as the chitobiase. No expressed sequence tags were identified for bovine α1-6mannosidase despite the identification of two homologs in the bovine genome. -
Understanding the Molecular Pathobiology of Acid Ceramidase Deficiency
Understanding the Molecular Pathobiology of Acid Ceramidase Deficiency By Fabian Yu A thesis submitted in conformity with the requirements for the degree of Doctor of Philosophy Institute of Medical Science University of Toronto © Copyright by Fabian PS Yu 2018 Understanding the Molecular Pathobiology of Acid Ceramidase Deficiency Fabian Yu Doctor of Philosophy Institute of Medical Science University of Toronto 2018 Abstract Farber disease (FD) is a devastating Lysosomal Storage Disorder (LSD) caused by mutations in ASAH1, resulting in acid ceramidase (ACDase) deficiency. ACDase deficiency manifests along a broad spectrum but in its classical form patients die during early childhood. Due to the scarcity of cases FD has largely been understudied. To circumvent this, our lab previously generated a mouse model that recapitulates FD. In some case reports, patients have shown signs of visceral involvement, retinopathy and respiratory distress that may lead to death. Beyond superficial descriptions in case reports, there have been no in-depth studies performed to address these conditions. To improve the understanding of FD and gain insights for evaluating future therapies, we performed comprehensive studies on the ACDase deficient mouse. In the visual system, we reported presence of progressive uveitis. Further tests revealed cellular infiltration, lipid buildup and extensive retinal pathology. Mice developed retinal dysplasia, impaired retinal response and decreased visual acuity. Within the pulmonary system, lung function tests revealed a decrease in lung compliance. Mice developed chronic lung injury that was contributed by cellular recruitment, and vascular leakage. Additionally, we report impairment to lipid homeostasis in the lungs. ii To understand the liver involvement in FD, we characterized the pathology and performed transcriptome analysis to identify gene and pathway changes. -
Genetic Ablation of Acid Ceramidase in Krabbe Disease Confirms the Psychosine Hypothesis and Identifies a New Therapeutic Target
Genetic ablation of acid ceramidase in Krabbe disease confirms the psychosine hypothesis and identifies a new therapeutic target Yedda Lia, Yue Xub, Bruno A. Beniteza, Murtaza S. Nagreec, Joshua T. Dearborna, Xuntian Jianga, Miguel A. Guzmand, Josh C. Woloszynekb, Alex Giaramitab, Bryan K. Yipb, Joseph Elsberndb, Michael C. Babcockb, Melanie Lob, Stephen C. Fowlere, David F. Wozniakf, Carole A. Voglerd, Jeffrey A. Medinc,g, Brett E. Crawfordb, and Mark S. Sandsa,h,1 aDepartment of Medicine, Washington University School of Medicine, St. Louis, MO 63110; bDepartment of Research, BioMarin Pharmaceutical Inc., Novato, CA 94949; cDepartment of Medical Biophysics, University of Toronto, Toronto, ON M5S, Canada; dDepartment of Pathology, St. Louis University School of Medicine, St. Louis, MO 63104; eDepartment of Pharmacology and Toxicology, University of Kansas, Lawrence, KS 66045; fDepartment of Psychiatry, Washington University School of Medicine, St. Louis, MO 63110; gPediatrics and Biochemistry, Medical College of Wisconsin, Milwaukee, WI 53226; and hDepartment of Genetics, Washington University School of Medicine, St. Louis, MO 63110 Edited by William S. Sly, Saint Louis University School of Medicine, St. Louis, MO, and approved August 16, 2019 (received for review July 15, 2019) Infantile globoid cell leukodystrophy (GLD, Krabbe disease) is a generated catabolically through the deacylation of galactosylceramide fatal demyelinating disorder caused by a deficiency in the lyso- by acid ceramidase (ACDase). This effectively dissociates GALC somal enzyme galactosylceramidase (GALC). GALC deficiency leads deficiency from psychosine accumulation, allowing us to test the to the accumulation of the cytotoxic glycolipid, galactosylsphingosine long-standing psychosine hypothesis. We demonstrate that genetic (psychosine). Complementary evidence suggested that psychosine loss of ACDase activity [Farber disease (FD) (8)] in the twitcher is synthesized via an anabolic pathway. -
Molecular Mechanism of Activation of the Immunoregulatory Amidase NAAA
Molecular mechanism of activation of the immunoregulatory amidase NAAA Alexei Gorelika,1, Ahmad Gebaia,1, Katalin Illesa, Daniele Piomellib,c,d, and Bhushan Nagara,2 aDepartment of Biochemistry, McGill University, Montreal, H3G0B1, Canada; bDepartment of Anatomy and Neurobiology, University of California, Irvine, CA 92697; cDepartment of Biochemistry, University of California, Irvine, CA 92697; and dDepartment of Pharmacology, University of California, Irvine, CA 92697 Edited by David Baker, University of Washington, Seattle, WA, and approved September 13, 2018 (received for review July 8, 2018) Palmitoylethanolamide is a bioactive lipid that strongly alleviates No NAAA-targeting compound has yet reached clinical trials. pain and inflammation in animal models and in humans. Its On the other hand, FAAH inhibitors are currently being tested signaling activity is terminated through degradation by N- in humans for the treatment of anxiety and depression (18). acylethanolamine acid amidase (NAAA), a cysteine hydrolase These properties are mediated by the activity of the FAAH expressed at high levels in immune cells. Pharmacological inhibi- substrate anandamide on cannabinoid receptors (18). Whereas tors of NAAA activity exert profound analgesic and antiinflam- FAAH hydrolyzes long-chain polyunsaturated NAEs, including matory effects in rodent models, pointing to this protein as a anandamide, more efficiently than short unsaturated ones such potential target for therapeutic drug discovery. To facilitate these as PEA (34), NAAA demonstrates an opposite substrate preference efforts and to better understand the molecular mechanism of ac- in vivo (27, 28, 31, 33) and in vitro (35, 36), with PEA being tion of NAAA, we determined crystal structures of this enzyme in its optimal substrate (15, 37). -
Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase -
Glucocerebrosidase 2 Gene Deletion Rescues Type 1 Gaucher Disease
Glucocerebrosidase 2 gene deletion rescues type 1 Gaucher disease Pramod K. Mistrya,1, Jun Liua,2, Li Sunb,c,2, Wei-Lien Chuangd, Tony Yuenb,c,e, Ruhua Yanga, Ping Lub,c, Kate Zhangd, Jianhua Lib,c, Joan Keutzerd, Agnes Stachnikb,c, Albert Mennonea, James L. Boyera, Dhanpat Jaina, Roscoe O. Bradyf, Maria I. Newb,e,1, and Mone Zaidib,c,1 aDepartment of Medicine, Yale School of Medicine, New Haven, CT 06520; bMount Sinai Bone Program, cDepartment of Medicine, and eDepartment of Pediatrics, Mount Sinai School of Medicine, New York, NY 10029; dGenzyme Sanofi, Framingham, MA 01701; and fNational Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD 20824 Contributed by Maria I. New, February 19, 2014 (sent for review December 11, 2013) The inherited deficiency of the lysosomal glucocerebrosidase basis of phenotypic diversity, unravel disease mechanism, and (GBA) due to mutations in the GBA gene results in Gaucher disease develop therapies have prompted the generation of mouse (GD). A vast majority of patients present with nonneuronopathic, models that recapitulate human GD1 (7–9). To this end, we have + type 1 GD (GD1). GBA deficiency causes the accumulation of two developed a GD1 mouse, Mx1–Cre :GD1, in which the Gba gene key sphingolipids, glucosylceramide (GL-1) and glucosylsphingo- is deleted in hematopoietic and mesenchymal lineage cells (4, 10, sine (LysoGL-1), classically noted within the lysosomes of mono- 11). This mouse displays hepatosplenomegaly, cytopenia, osteope- nuclear phagocytes. How metabolites of GL-1 or LysoGL-1 produced nia, Th1/Th2 hypercytokinemia, and an array of defects in early T- by extralysosomal glucocerebrosidase GBA2 contribute to the GD1 cell maturation, B-cell recruitment, and antigen presentation (4, 10). -
Molecular Cloning and Knockdown of Galactocerebrosidase in Zebrafish
Biochimica et Biophysica Acta 1842 (2014) 665–675 Contents lists available at ScienceDirect Biochimica et Biophysica Acta journal homepage: www.elsevier.com/locate/bbadis Molecular cloning and knockdown of galactocerebrosidase in zebrafish: New insights into the pathogenesis of Krabbe's disease Daniela Zizioli a,1, Michela Guarienti a,1,ChiaraTobiab, Giuseppina Gariano b, Giuseppe Borsani c, Roberto Bresciani a,RobertoRoncab, Edoardo Giacopuzzi c, Augusto Preti a, Germano Gaudenzi d, Mirella Belleri b, Emanuela Di Salle b, Gemma Fabrias e, Josefina Casas e,DomenicoRibattif,g, Eugenio Monti a,MarcoPrestab,⁎ a Unit of Biotechnology, Department of Molecular and Translational Medicine, University of Brescia, Brescia, Italy b Unit of Oncology and Experimental Immunology, Department of Molecular and Translational Medicine, University of Brescia, Brescia, Italy c Unit of Biology and Genetics, Department of Molecular and Translational Medicine, University of Brescia, Brescia, Italy d Department of Biology, University of Milan, Milan, Italy e Research Unit on Bioactive Molecules (RUBAM), Department of Biomedicinal Chemistry, Institute for Advanced Chemistry of Catalonia (IQAC), Spanish Council for Scientific Research (CSIC), Barcelona, Spain f Department of Basic Biomedical Sciences, Unit of Human Anatomy and Histology, University of Bari, Bari, Italy g National Cancer Institute, Giovanni Paolo II, Bari, Italy article info abstract Article history: The lysosomal hydrolase galactocerebrosidase (GALC) catalyzes the removal of galactose from galactosylceramide Received 2 September 2013 and from other sphingolipids. GALC deficiency is responsible for globoid cell leukodystrophy (GLD), or Krabbe's Received in revised form 17 December 2013 disease, an early lethal inherited neurodegenerative disorder characterized by the accumulation of the neurotoxic Accepted 15 January 2014 metabolite psychosine in the central nervous system (CNS). -
ASAH1 Variant Causing a Mild SMA Phenotype with No Myoclonic Epilepsy: a Clinical, Biochemical and Molecular Study
European Journal of Human Genetics (2016) 24, 1578–1583 & 2016 Macmillan Publishers Limited, part of Springer Nature. All rights reserved 1018-4813/16 www.nature.com/ejhg ARTICLE ASAH1 variant causing a mild SMA phenotype with no myoclonic epilepsy: a clinical, biochemical and molecular study Massimiliano Filosto*,1, Massimo Aureli2, Barbara Castellotti3, Fabrizio Rinaldi1, Domitilla Schiumarini2, Manuela Valsecchi2, Susanna Lualdi4, Raffaella Mazzotti4, Viviana Pensato3, Silvia Rota1, Cinzia Gellera3, Mirella Filocamo4 and Alessandro Padovani1 ASAH1 gene encodes for acid ceramidase that is involved in the degradation of ceramide into sphingosine and free fatty acids within lysosomes. ASAH1 variants cause both the severe and early-onset Farber disease and rare cases of spinal muscular atrophy (SMA) with progressive myoclonic epilepsy (SMA-PME), phenotypically characterized by childhood onset of proximal muscle weakness and atrophy due to spinal motor neuron degeneration followed by occurrence of severe and intractable myoclonic seizures and death in the teenage years. We studied two subjects, a 30-year-old pregnant woman and her 17-year-old sister, affected with a very slowly progressive non-5q SMA since childhood. No history of seizures or myoclonus has been reported and EEG was unremarkable. The molecular study of ASAH1 gene showed the presence of the homozygote nucleotide variation c.124A4G (r.124a4g) that causes the amino acid substitution p.Thr42Ala. Biochemical evaluation of cultured fibroblasts showed both reduction in ceramidase activity and accumulation of ceramide compared with the normal control. This study describes for the first time the association between ASAH1 variants and an adult SMA phenotype with no myoclonic epilepsy nor death in early age, thus expanding the phenotypic spectrum of ASAH1-related SMA. -
Glycosphingolipids Are Modulators of Disease Pathogenesis in Amyotrophic Lateral Sclerosis
Glycosphingolipids are modulators of disease pathogenesis in amyotrophic lateral sclerosis James C. Dodgea,1, Christopher M. Treleavena, Joshua Pachecoa, Samantha Coopera,ChannaBaoa, Marissa Abrahama, Mandy Cromwella, S. Pablo Sardia, Wei-Lien Chuanga, Richard L. Sidmanb,1,2,SengH.Chenga, and Lamya S. Shihabuddina aRare Diseases Science, Genzyme, a Sanofi Company, Framingham, MA 01701; and bBeth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215 Contributed by Richard L. Sidman, May 7, 2015 (sent for review January 12, 2015; reviewed by David V. Schaffer) Recent genetic evidence suggests that aberrant glycosphingolipid mediates the hydrolysis of Cer, are linked to forms of spinal metabolism plays an important role in several neuromuscular muscular atrophy that are not caused by the more frequent mu- diseases including hereditary spastic paraplegia, hereditary sen- tations in the survival motor neuron 1 gene (non-5q SMA) (15). sory neuropathy type 1, and non-5q spinal muscular atrophy. Here, Moreover, hereditary spastic paraplegia (HSP), a disease with cor- we investigated whether altered glycosphingolipid metabolism is ticospinal tract and in some cases, spinal cord MN degeneration, a modulator of disease course in amyotrophic lateral sclerosis (ALS). is attributed to mutations in GM2 synthase (16) and the non- Levels of ceramide, glucosylceramide, galactocerebroside, lactosyl- lysosomal glucosylceramidase, GBA2 (17). Last, patients with adult- ceramide, globotriaosylceramide, and the gangliosides GM3 and onset Tay-Sachs disease (GM2 gangliosidosis), a disease triggered GM1 were significantly elevated in spinal cords of ALS patients. by a deficiency in hexosaminidase (HEX), a lysosomal enzyme Moreover, enzyme activities (glucocerebrosidase-1, glucocerebrosi- that hydrolyzes GM2 to GM3, have been reported in some in- dase-2, hexosaminidase, galactosylceramidase, α-galactosidase, and stances to display a disease phenotype that closely mimics ALS β-galactosidase) mediating glycosphingolipid hydrolysis were also (18–20). -
Fiber Specific Changes in Sphingolipid Metabolism in Skeletal
Lipids (2013) 48:697–704 DOI 10.1007/s11745-013-3769-3 ORIGINAL ARTICLE Fiber Specific Changes in Sphingolipid Metabolism in Skeletal Muscles of Hyperthyroid Rats A. Chabowski • M. Zendzian-Piotrowska_ • A. Mikłosz • B. Łukaszuk • K. Kurek • J. Go´rski Received: 1 September 2012 / Accepted: 22 January 2013 / Published online: 7 March 2013 Ó The Author(s) 2013. This article is published with open access at Springerlink.com Abstract Thyroid hormones (T3,T4) are well known SPA Sphinganine modulators of different cellular signals including the SPH Sphingosine sphingomyelin pathway. However, studies regarding S-1-P Sphingosine-1-phosphate downstream effects of T3 on sphingolipid metabolism in CER Ceramide skeletal muscle are scarce. In the present work we sought SM Sphingomyelin to investigate the effects of hyperthyroidism on the activity aSM-ase Acid sphingomyelinase of the key enzymes of ceramide metabolism as well as nSM-ase Neutral sphingomyelinase the content of fundamental sphingolipids. Based on fiber/ alCDase Alkaline ceramidase metabolic differences, we chose three different skeletal nCDase Neutral ceramidase muscles, with diverse fiber compositions: soleus (slow- SPT Serine palmitoyltransferase twitch oxidative), red (fast-twitch oxidative-glycolytic) THR Thyroid hormone receptor and white (fast-twitch glycolytic) section of gastrocne- mius. We demonstrated that T3 induced accumulation of sphinganine, ceramide, sphingosine, as well as sphingo- myelin, mostly in soleus and in red, but not white section of gastrocnemius. Concomitantly, the activity of serine Introduction palmitoyltransferase and acid/neutral ceramidase was increased in more oxidative muscles. In conclusion, Thyroid hormones (T3,T4) are well known modulators of hyperthyroidism induced fiber specific changes in the whole body energy utilization. -
GALC Gene Galactosylceramidase
GALC gene galactosylceramidase Normal Function The GALC gene provides instructions for making an enzyme called galactosylceramidase. Through a process called hydrolysis, this enzyme uses water molecules to break down certain fats called galactolipids, which are found primarily in the nervous system and kidneys. Within cells, galactosylceramidase is found in enzyme-filled sacs called lysosomes where it hydrolyzes specific galactolipids, including galactosylceramide and psychosine. Galactosylceramide is an important component of myelin, the protective covering around certain nerve cells that ensures the rapid transmission of nerve impulses. Its breakdown by galactosylceramidase is part of the normal turnover of myelin that occurs throughout life. Psychosine, which is toxic to cells, forms during the production of myelin and is quickly broken down by galactosylceramidase. Under normal conditions, tissues contain very little psychosine. Health Conditions Related to Genetic Changes Krabbe disease More than 200 GALC gene mutations that cause Krabbe disease have been identified. Krabbe disease is a brain disorder that usually begins in infancy (infantile Krabbe disease) and causes movement and eating problems, impaired development, and seizures. The most common mutation in affected individuals of European ancestry ( often called 30-kb del) deletes a large segment of the GALC gene. Other mutations insert additional DNA building blocks (nucleotides) into the GALC gene, delete a small number of nucleotides from the gene, or replace single nucleotides with incorrect nucleotides. These GALC gene mutations severely reduce or eliminate the activity of the galactosylceramidase enzyme. As a result, galactosylceramide and psychosine cannot be broken down. The accumulation of these galactolipids causes damage to myelin- forming cells, which impairs the formation of myelin and leads to the loss of myelin ( demyelination) in the nervous system.