A Cladistic Approach for the Classification of Oligotrichid Ciliates (Ciliophora: Spirotricha)
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Faculdade De Biociências
FACULDADE DE BIOCIÊNCIAS PROGRAMA DE PÓS-GRADUAÇÃO EM ZOOLOGIA ANÁLISE FILOGENÉTICA DE DORADIDAE (PISCES, SILURIFORMES) Maria Angeles Arce Hernández TESE DE DOUTORADO PONTIFÍCIA UNIVERSIDADE CATÓLICA DO RIO GRANDE DO SUL Av. Ipiranga 6681 - Caixa Postal 1429 Fone: (51) 3320-3500 - Fax: (51) 3339-1564 90619-900 Porto Alegre - RS Brasil 2012 PONTIFÍCIA UNIVERSIDADE CATÓLICA DO RIO GRANDE DO SUL FACULDADE DE BIOCIÊNCIAS PROGRAMA DE PÓS-GRADUAÇÃO EM ZOOLOGIA ANÁLISE FILOGENÉTICA DE DORADIDAE (PISCES, SILURIFORMES) Maria Angeles Arce Hernández Orientador: Dr. Roberto E. Reis TESE DE DOUTORADO PORTO ALEGRE - RS - BRASIL 2012 Aviso A presente tese é parte dos requisitos necessários para obtenção do título de Doutor em Zoologia, e como tal, não deve ser vista como uma publicação no senso do Código Internacional de Nomenclatura Zoológica, apesar de disponível publicamente sem restrições. Dessa forma, quaisquer informações inéditas, opiniões, hipóteses e conceitos novos apresentados aqui não estão disponíveis na literatura zoológica. Pessoas interessadas devem estar cientes de que referências públicas ao conteúdo deste estudo somente devem ser feitas com aprovação prévia do autor. Notice This thesis is presented as partial fulfillment of the dissertation requirement for the Ph.D. degree in Zoology and, as such, is not intended as a publication in the sense of the International Code of Zoological Nomenclature, although available without restrictions. Therefore, any new data, opinions, hypothesis and new concepts expressed hererin are not available -
Molecular Parasitology Protozoan Parasites and Their Molecules Molecular Parasitology Julia Walochnik • Michael Duchêne Editors
Julia Walochnik Michael Duchêne Editors Molecular Parasitology Protozoan Parasites and their Molecules Molecular Parasitology Julia Walochnik • Michael Duchêne Editors Molecular Parasitology Protozoan Parasites and their Molecules Editors Julia Walochnik Michael Duchêne Institute of Specifi c Prophylaxis Institute of Specifi c Prophylaxis and Tropical Medicine and Tropical Medicine Center for Pathophysiology, Infectiology Center for Pathophysiology, Infectiology and Immunology and Immunology Medical University of Vienna Medical University of Vienna Vienna Vienna Austria Austria ISBN 978-3-7091-1415-5 ISBN 978-3-7091-1416-2 (eBook) DOI 10.1007/978-3-7091-1416-2 Library of Congress Control Number: 2016947730 © Springer-Verlag Wien 2016 This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifi cally the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfi lms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specifi c statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. The publisher, the authors and the editors are safe to assume that the advice and information in this book are believed to be true and accurate at the date of publication. Neither the publisher nor the authors or the editors give a warranty, express or implied, with respect to the material contained herein or for any errors or omissions that may have been made. -
Morphology, Ontogeny and Molecular Phylogeny of a New Urostylid Ciliate, Bakuella (Pseudobakuella) Guangdongica N
Morphology, Ontogeny and Molecular Phylogeny of a New Urostylid Ciliate, Bakuella (Pseudobakuella) Guangdongica n. sp. (Protista, Ciliophora, Hypotrichia) from Southern China Jingyi Wang Shaanxi Normal University Jingbao Li Northwestern Polytechnical University Yurui Wang Ocean University of China Saleh A. Al-Farraj King Saud University Chen Shao ( [email protected] ) Shanxi Normal University https://orcid.org/0000-0001-8474-3204 Research article Keywords: Morphology, Morphogenesis, New ciliate, Phylogeny, Soil Posted Date: August 20th, 2020 DOI: https://doi.org/10.21203/rs.3.rs-55284/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/23 Abstract Background: Spirotrich ciliates are one of the most diverse groupsin the phylum Ciliophora and are widely distributed in marine, freshwater, and terrestrial biotopes. Many nominal species are, however, poorly known and their systematic positions remain uncertain due to the lack of information concerning their infraciliature, morphogenesis, and gene sequences. In this paper, the morphology and morphogenesis of Bakuella (Pseudobakuella) guangdongica n. sp. were studied, in addition, genomic DNA was extracted in order to sequence the small subunit rDNA. Results: Bakuella (Pseudobakuella) guangdongica n. sp. is characterized by 150–225 µm in vivo; 35–42 adoral membranelles; three to ve buccal, two frontoterminal and eight to 13 transverse + pretransverse cirri; midventral complex comprised of 10–20 midventral pairs and two -
Phylogenomic Analysis of Balantidium Ctenopharyngodoni (Ciliophora, Litostomatea) Based on Single-Cell Transcriptome Sequencing
Parasite 24, 43 (2017) © Z. Sun et al., published by EDP Sciences, 2017 https://doi.org/10.1051/parasite/2017043 Available online at: www.parasite-journal.org RESEARCH ARTICLE Phylogenomic analysis of Balantidium ctenopharyngodoni (Ciliophora, Litostomatea) based on single-cell transcriptome sequencing Zongyi Sun1, Chuanqi Jiang2, Jinmei Feng3, Wentao Yang2, Ming Li1,2,*, and Wei Miao2,* 1 Hubei Key Laboratory of Animal Nutrition and Feed Science, Wuhan Polytechnic University, Wuhan 430023, PR China 2 Institute of Hydrobiology, Chinese Academy of Sciences, No. 7 Donghu South Road, Wuchang District, Wuhan 430072, Hubei Province, PR China 3 Department of Pathogenic Biology, School of Medicine, Jianghan University, Wuhan 430056, PR China Received 22 April 2017, Accepted 12 October 2017, Published online 14 November 2017 Abstract- - In this paper, we present transcriptome data for Balantidium ctenopharyngodoni Chen, 1955 collected from the hindgut of grass carp (Ctenopharyngodon idella). We evaluated sequence quality and de novo assembled a preliminary transcriptome, including 43.3 megabits and 119,141 transcripts. Then we obtained a final transcriptome, including 17.7 megabits and 35,560 transcripts, by removing contaminative and redundant sequences. Phylogenomic analysis based on a supermatrix with 132 genes comprising 53,873 amino acid residues and phylogenetic analysis based on SSU rDNA of 27 species were carried out herein to reveal the evolutionary relationships among six ciliate groups: Colpodea, Oligohymenophorea, Litostomatea, Spirotrichea, Hetero- trichea and Protocruziida. The topologies of both phylogenomic and phylogenetic trees are discussed in this paper. In addition, our results suggest that single-cell sequencing is a sound method of obtaining sufficient omics data for phylogenomic analysis, which is a good choice for uncultivable ciliates. -
Phylogenetic Relationships of the South American Doradoidea (Ostariophysi: Siluriformes)
Neotropical Ichthyology, 12(3): 451-564, 2014 Copyright © 2014 Sociedade Brasileira de Ictiologia DOI: 10.1590/1982-0224-20120027 Phylogenetic relationships of the South American Doradoidea (Ostariophysi: Siluriformes) José L. O. Birindelli A phylogenetic analysis based on 311 morphological characters is presented for most species of the Doradidae, all genera of the Auchenipteridae, and representatives of 16 other catfish families. The hypothesis that was derived from the six most parsimonious trees support the monophyly of the South American Doradoidea (Doradidae plus Auchenipteridae), as well as the monophyly of the clade Doradoidea plus the African Mochokidae. In addition, the clade with Sisoroidea plus Aspredinidae was considered sister to Doradoidea plus Mochokidae. Within the Auchenipteridae, the results support the monophyly of the Centromochlinae and Auchenipterinae. The latter is composed of Tocantinsia, and four monophyletic units, two small with Asterophysus and Liosomadoras, and Pseudotatia and Pseudauchenipterus, respectively, and two large ones with the remaining genera. Within the Doradidae, parsimony analysis recovered Wertheimeria as sister to Kalyptodoras, composing a clade sister to all remaining doradids, which include Franciscodoras and two monophyletic groups: Astrodoradinae (plus Acanthodoras and Agamyxis) and Doradinae (new arrangement). Wertheimerinae, new subfamily, is described for Kalyptodoras and Wertheimeria. Doradinae is corroborated as monophyletic and composed of four groups, one including Centrochir and Platydoras, the other with the large-size species of doradids (except Oxydoras), another with Orinocodoras, Rhinodoras, and Rhynchodoras, and another with Oxydoras plus all the fimbriate-barbel doradids. Based on the results, the species of Opsodoras are included in Hemidoras; and Tenellus, new genus, is described to include Nemadoras trimaculatus, N. -
Protistology an International Journal Vol
Protistology An International Journal Vol. 10, Number 2, 2016 ___________________________________________________________________________________ CONTENTS INTERNATIONAL SCIENTIFIC FORUM «PROTIST–2016» Yuri Mazei (Vice-Chairman) Welcome Address 2 Organizing Committee 3 Organizers and Sponsors 4 Abstracts 5 Author Index 94 Forum “PROTIST-2016” June 6–10, 2016 Moscow, Russia Website: http://onlinereg.ru/protist-2016 WELCOME ADDRESS Dear colleagues! Republic) entitled “Diplonemids – new kids on the block”. The third lecture will be given by Alexey The Forum “PROTIST–2016” aims at gathering Smirnov (Saint Petersburg State University, Russia): the researchers in all protistological fields, from “Phylogeny, diversity, and evolution of Amoebozoa: molecular biology to ecology, to stimulate cross- new findings and new problems”. Then Sandra disciplinary interactions and establish long-term Baldauf (Uppsala University, Sweden) will make a international scientific cooperation. The conference plenary presentation “The search for the eukaryote will cover a wide range of fundamental and applied root, now you see it now you don’t”, and the fifth topics in Protistology, with the major focus on plenary lecture “Protist-based methods for assessing evolution and phylogeny, taxonomy, systematics and marine water quality” will be made by Alan Warren DNA barcoding, genomics and molecular biology, (Natural History Museum, United Kingdom). cell biology, organismal biology, parasitology, diversity and biogeography, ecology of soil and There will be two symposia sponsored by ISoP: aquatic protists, bioindicators and palaeoecology. “Integrative co-evolution between mitochondria and their hosts” organized by Sergio A. Muñoz- The Forum is organized jointly by the International Gómez, Claudio H. Slamovits, and Andrew J. Society of Protistologists (ISoP), International Roger, and “Protists of Marine Sediments” orga- Society for Evolutionary Protistology (ISEP), nized by Jun Gong and Virginia Edgcomb. -
Hydrothermal Activity and Water Mass Composition Shape Microbial Eukaryote Diversity and Biogeography in the Okinawa Trough Margaret Mars Brisbina, Asa E
bioRxiv preprint doi: https://doi.org/10.1101/714816; this version posted July 25, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Hydrothermal activity and water mass composition shape microbial eukaryote diversity and biogeography in the Okinawa Trough Margaret Mars Brisbina, Asa E. Conovera, Satoshi Mitaraia 5 a Marine Biophysics Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan Correspondance M. Mars Brisbin, Marine Biophysics Unit, Okinawa Institute of Science and Technology 10 Graduate University, 1919-1 Tancha, Onna-son, Okinawa, Japan e-mail: [email protected] Abstract Microbial eukaryotes (protists) contribute substantially to ecological functioning in 15 marine ecosystems, but factors shaping protist diversity, such as dispersal barriers and environmental selection, remain difficult to parse. Deep-sea water masses, which form geographic barriers, and hydrothermal vents, which represent isolated productivity hotspots, are ideal opportunities for studying the effects of dispersal barriers and environmental selection on protist communities. The Okinawa Trough, a deep, back-arc 20 spreading basin, contains distinct water masses in the northern and southern regions and at least twenty-five active hydrothermal vents. In this study we used metabarcoding to characterize protistan communities from fourteen stations spanning the length of the Okinawa Trough, including three hydrothermal vent sites. Significant differences in community by region and water mass were present, and protist communities in 25 hydrothermally-influenced bottom-water were significantly different from communities in other bottom waters. -
Succession of Primary Producers and Micrograzers in a Coastal Ecosystem Dominated by Phaeocystis Globosa Blooms
Succession of primary producers and micrograzers in a coastal ecosystem dominated by Phaeocystis globosa blooms Jean-David Grattepanche, Elsa Breton, Jean-Michel Brylinski, Eric Lecuyer, Urania Christaki To cite this version: Jean-David Grattepanche, Elsa Breton, Jean-Michel Brylinski, Eric Lecuyer, Urania Christaki. Suc- cession of primary producers and micrograzers in a coastal ecosystem dominated by Phaeocystis glo- bosa blooms. Journal of Plankton Research, Oxford University Press (OUP), 2010, 33 (1), pp.37. 10.1093/plankt/FBQ097. hal-00614852 HAL Id: hal-00614852 https://hal.archives-ouvertes.fr/hal-00614852 Submitted on 17 Aug 2011 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Journal of Plankton Research Succession of primary producers and micrograzers in a coastal ecosystem dominated by Phaeocystis globosa blooms For Peer Review Journal: Journal of Plankton Research Manuscript ID: JPR-2010-077.R2 Manuscript Type: Original Article Date Submitted by the 02-Jul-2010 Author: Complete List of Authors: Grattepanche, Jean-David; Univ Lille Nord -
(Monogenea: Dactylogyridae) and a Redescription of D
Journal of Helminthology (2018) 92, 228–243 doi:10.1017/S0022149X17000256 © Cambridge University Press 2017 Morphology and molecular characterization of Demidospermus spirophallus n. sp., D. prolixus n. sp. (Monogenea: Dactylogyridae) and a redescription of D. anus in siluriform catfish from Brazil L. Franceschini1*, A.C. Zago1, M.I. Müller1, C.J. Francisco1, R.M. Takemoto2 and R.J. da Silva1 1São Paulo State University (Unesp), Institute of Biosciences, Botucatu, Brazil, CEP 18618-689: 2State University of Maringá (UEM), Limnology, Ichthyology and Aquaculture Research Center (Nupélia), Maringá, Brazil, CEP 87020-900 (Received 29 September 2016; Accepted 26 February 2017; First published online 6 April 2017) Abstract The present study describes Demidospermus spirophallus n. sp. and Demidosper- mus prolixus n. sp. (Monogenea, Dactylogyridae) from the siluriform catfish Loricaria prolixa Isbrücker & Nijssen, 1978 (Siluriformes, Loricariidae) from the state of São Paulo, Brazil, supported by morphological and molecular data. In add- ition, notes on the circumscription of the genus with a redescription of Demisdospermus anus are presented. Demidospermus spirophallus n. sp. differed from other congeners mainly because of the morphology of the male copulatory organ (MCO), which exhibited 2½ counterclockwise rings, a tubular accessory piece with one bifurcated end and a weakly sclerotized vagina with sinistral open- ing. Demidospermus prolixus n. sp. presents a counterclockwise-coiled MCO with 1½ rings, an ovate base, a non-articulated groove-like accessory piece serving as an MCO guide, two different hook shapes, inconspicuous tegumental annulations, a non-sclerotized vagina with sinistral opening and the absence of eyes or acces- sory eyespots. The present study provides, for the first time, molecular character- ization data using the partial ribosomal gene (28S) of two new species of Demidospermus from Brazil (D. -
Impact on the Life of Common People for the Floods in Coloneal Period (1770 Ad-1900Ad) & Recent Time (1995 Ad-2016 Ad): a Case Study of Nadia District, West Bengal
© 2019 JETIR June 2019, Volume 6, Issue 6 www.jetir.org (ISSN-2349-5162) IMPACT ON THE LIFE OF COMMON PEOPLE FOR THE FLOODS IN COLONEAL PERIOD (1770 AD-1900AD) & RECENT TIME (1995 AD-2016 AD): A CASE STUDY OF NADIA DISTRICT, WEST BENGAL. Ujjal Roy Research Scholar (T.M.B.U), Department of Geography. Abstract: Hazard is a harmful incident for human life which can destroy so many precious things like crops, houses, cattle, others wealth like money, furniture, valuable documents and human lives also. So many hazards are happens like earthquake, tsunamis, drought, volcanic eruption, floods etc for natural reasons. Global warming, human interferences increase those incidents of hazard. Flood is a one of the hazard which basically happens for natural reason but human interferences increase the frequency and depth of this which is very destructive for human society. Nadia is a historically very famous district lies between 22053’ N and 24011’ N latitude and longitude from 88009 E to 88048 E, covering an area of 3,927 square km under the State of West Bengal in India but regular incidents of floods almost every year in time of monsoon is a big problem here. Unscientific development works from British Period hamper the drainage systems of Nadia and create many incidents of flood in colonial period. Still now millions of people face this problem in various blocks of Nadia. Development in scientific way, preservation of water bodies & river, dig new ponds & canals, increase awareness programme between publics, modernise flood warning system, obey the safety precaution rules in time of flood can save the people from this hazard. -
Research Paper Zoology Abundance of Pisces and Status of Water of Mathabhanga- Churni River in Indo-Bangla Border Region
Volume-3, Issue-7, July-2014 • ISSN No 2277 - 8160 Research Paper Zoology Abundance of Pisces and Status of Water of mathabhanga- Churni River in Indo-Bangla Border Region. Bidhan Chandra Research Scholar (Assistant Professor, Govt. K. C. College, Bangladesh) Fisheries and Aquaculture Extension Laboratory Department Of Zoology, Biswas University Of Kalyani,Kalyani-741235, Nadia, West Bengal, India. Ashis kumar Associate professor,Fisheries and Aquaculture Extension Laboratory Department Of Zoology, University Of Kalyani,Kalyani-741235, Nadia, West Panigrahi Bengal, India. ABSTRACT Measurement of water quality parameters plays a vital role in determining the pollutional load and correctness of a particular water body for aquatic organisms. The present investigations was carried out to measure the physiochemical parameters of Mathabhanga- Churni river in Indo-Bangla Border region to assess the pollution status for a period of one year from June 2012-to May 2013. The calculated physiochemical parameters revealed that the average ranges of Temperature, pH, DO, BOD, COD, Hardness, Alkalinity, Nitrate, Organic carbon and Freeco2 were 33.150c and 19.260c, 8.4 and 6.4, 5.1mg/l and 0.88mg/l, 46mg/l and 2.04mg/l, 420mg/l and 250mg/l, 660mg/l and 322mg/l, 560mg/l 380, 95mg/l and0.99 mg/l, 54mg/l and 16.4mg/l, 22mg/l and 05mg/l respectively. The results obtained from study showed that the measured parameters exhibit a great seasonal variation in different months of the year during the investigation and showed great difference in standard criteria of water quality indicates huge pollution effect on aquatic organisms especially on fish faunal diversity.33 fishes were identified during the investigation from one year and most of the species were carps and cat fishes. -
Food Ecology of Hassar Affinis (Actinopterygii: Doradidae)
Research, Society and Development, v. 10, n. 8, e10110816973, 2021 (CC BY 4.0) | ISSN 2525-3409 | DOI: http://dx.doi.org/10.33448/rsd-v10i8.16973 Food ecology of Hassar affinis (Actinopterygii: Doradidae) in two lakes of a wet zone of international importance in Northeast Brazil Ecologia alimentar de Hassar affinis (Actinopterygii: Doradidae) em dois lagos de uma zona úmida de importância internacional no Nordeste do Brasil Ecología alimentaria de Hassar affinis (Actinopterygii: Doradidae) en dos lagos de una zona húmeda de importancia internacional en el Noreste de Brasil Received: 06/08/2021 | Reviewed: 06/16/2021 | Accept: 06/21/2021 | Published: 07/07/2021 Maria Fabiene de Sousa Barros ORCID https://orcid.org/0000-0003-4280-443X Universidade Estadual do Maranhão, Brazil E-mail: [email protected] Zafira da Silva de Almeida ORCID https://orcid.org/0000-0002-8295-5040 Universidade Estadual do Maranhão, Brazil E-mail: [email protected] Marina Bezerra Figueiredo ORCID http://orcid.org/0000-0001-7485-8593 Universidade Estadual do Maranhão, Brazil E-mail: [email protected] Jorge Luiz Silva Nunes ORCID https://orcid.org/0000-0001-6223-1785 Universidade Estadual do Maranhão, Brazil E-mail: [email protected] Raimunda Nonata Fortes Carvalho Neta ORCID http://orcid.org/0000-0002-3519-5237 Universidade Estadual do Maranhão, Brazil E-mail: [email protected] Abstract The study aimed to describe the aspects of trophic ecology and feeding strategy of the Hassar affinis species in two lakes in the Baixada Maranhense region a wetland of international ecological interest (Site Ramsar). Individuals were collected monthly for one year.