Bridging the Gap Between Cross-Lingual NLP and Dbpedia by Exploiting Wikipedia
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Information Extraction from Electronic Medical Records Using Multitask Recurrent Neural Network with Contextual Word Embedding
applied sciences Article Information Extraction from Electronic Medical Records Using Multitask Recurrent Neural Network with Contextual Word Embedding Jianliang Yang 1 , Yuenan Liu 1, Minghui Qian 1,*, Chenghua Guan 2 and Xiangfei Yuan 2 1 School of Information Resource Management, Renmin University of China, 59 Zhongguancun Avenue, Beijing 100872, China 2 School of Economics and Resource Management, Beijing Normal University, 19 Xinjiekou Outer Street, Beijing 100875, China * Correspondence: [email protected]; Tel.: +86-139-1031-3638 Received: 13 August 2019; Accepted: 26 August 2019; Published: 4 September 2019 Abstract: Clinical named entity recognition is an essential task for humans to analyze large-scale electronic medical records efficiently. Traditional rule-based solutions need considerable human effort to build rules and dictionaries; machine learning-based solutions need laborious feature engineering. For the moment, deep learning solutions like Long Short-term Memory with Conditional Random Field (LSTM–CRF) achieved considerable performance in many datasets. In this paper, we developed a multitask attention-based bidirectional LSTM–CRF (Att-biLSTM–CRF) model with pretrained Embeddings from Language Models (ELMo) in order to achieve better performance. In the multitask system, an additional task named entity discovery was designed to enhance the model’s perception of unknown entities. Experiments were conducted on the 2010 Informatics for Integrating Biology & the Bedside/Veterans Affairs (I2B2/VA) dataset. Experimental results show that our model outperforms the state-of-the-art solution both on the single model and ensemble model. Our work proposes an approach to improve the recall in the clinical named entity recognition task based on the multitask mechanism. -
The History and Recent Advances of Natural Language Interfaces for Databases Querying
E3S Web of Conferences 229, 01039 (2021) https://doi.org/10.1051/e3sconf/202122901039 ICCSRE’2020 The history and recent advances of Natural Language Interfaces for Databases Querying Khadija Majhadi1*, and Mustapha Machkour1 1Team of Engineering of Information Systems, Faculty of Sciences Agadir, Morocco Abstract. Databases have been always the most important topic in the study of information systems, and an indispensable tool in all information management systems. However, the extraction of information stored in these databases is generally carried out using queries expressed in a computer language, such as SQL (Structured Query Language). This generally has the effect of limiting the number of potential users, in particular non-expert database users who must know the database structure to write such requests. One solution to this problem is to use Natural Language Interface (NLI), to communicate with the database, which is the easiest way to get information. So, the appearance of Natural Language Interfaces for Databases (NLIDB) is becoming a real need and an ambitious goal to translate the user’s query given in Natural Language (NL) into the corresponding one in Database Query Language (DBQL). This article provides an overview of the state of the art of Natural Language Interfaces as well as their architecture. Also, it summarizes the main recent advances on the task of Natural Language Interfaces for databases. 1 Introduction of recent Natural Language Interfaces for databases by highlighting the architectures they used before For several years, databases have become the preferred concluding and giving some perspectives on our future medium for data storage in all information management work. -
Wikimedia Conferentie Nederland 2012 Conferentieboek
http://www.wikimediaconferentie.nl WCN 2012 Conferentieboek CC-BY-SA 9:30–9:40 Opening 9:45–10:30 Lydia Pintscher: Introduction to Wikidata — the next big thing for Wikipedia and the world Wikipedia in het onderwijs Technische kant van wiki’s Wiki-gemeenschappen 10:45–11:30 Jos Punie Ralf Lämmel Sarah Morassi & Ziko van Dijk Het gebruik van Wikimedia Commons en Wikibooks in Community and ontology support for the Wikimedia Nederland, wat is dat precies? interactieve onderwijsvormen voor het secundaire onderwijs 101wiki 11:45–12:30 Tim Ruijters Sandra Fauconnier Een passie voor leren, de Nederlandse wikiversiteit Projecten van Wikimedia Nederland in 2012 en verder Bliksemsessie …+discussie …+vragensessie Lunch 13:15–14:15 Jimmy Wales 14:30–14:50 Wim Muskee Amit Bronner Lotte Belice Baltussen Wikipedia in Edurep Bridging the Gap of Multilingual Diversity Open Cultuur Data: Een bottom-up initiatief vanuit de erfgoedsector 14:55–15:15 Teun Lucassen Gerard Kuys Finne Boonen Scholieren op Wikipedia Onderwerpen vinden met DBpedia Blijf je of ga je weg? 15:30–15:50 Laura van Broekhoven & Jan Auke Brink Jeroen De Dauw Jan-Bart de Vreede 15:55–16:15 Wetenschappelijke stagiairs vertalen onderzoek naar Structured Data in MediaWiki Wikiwijs in vergelijking tot Wikiversity en Wikibooks Wikipedia–lemma 16:20–17:15 Prijsuitreiking van Wiki Loves Monuments Nederland 17:20–17:30 Afsluiting 17:30–18:30 Borrel Inhoudsopgave Organisatie 2 Voorwoord 3 09:45{10:30: Lydia Pintscher 4 13:15{14:15: Jimmy Wales 4 Wikipedia in het onderwijs 5 11:00{11:45: Jos Punie -
Probabilistic Topic Modelling with Semantic Graph
Probabilistic Topic Modelling with Semantic Graph B Long Chen( ), Joemon M. Jose, Haitao Yu, Fajie Yuan, and Huaizhi Zhang School of Computing Science, University of Glasgow, Sir Alwyns Building, Glasgow, UK [email protected] Abstract. In this paper we propose a novel framework, topic model with semantic graph (TMSG), which couples topic model with the rich knowledge from DBpedia. To begin with, we extract the disambiguated entities from the document collection using a document entity linking system, i.e., DBpedia Spotlight, from which two types of entity graphs are created from DBpedia to capture local and global contextual knowl- edge, respectively. Given the semantic graph representation of the docu- ments, we propagate the inherent topic-document distribution with the disambiguated entities of the semantic graphs. Experiments conducted on two real-world datasets show that TMSG can significantly outperform the state-of-the-art techniques, namely, author-topic Model (ATM) and topic model with biased propagation (TMBP). Keywords: Topic model · Semantic graph · DBpedia 1 Introduction Topic models, such as Probabilistic Latent Semantic Analysis (PLSA) [7]and Latent Dirichlet Analysis (LDA) [2], have been remarkably successful in ana- lyzing textual content. Specifically, each document in a document collection is represented as random mixtures over latent topics, where each topic is character- ized by a distribution over words. Such a paradigm is widely applied in various areas of text mining. In view of the fact that the information used by these mod- els are limited to document collection itself, some recent progress have been made on incorporating external resources, such as time [8], geographic location [12], and authorship [15], into topic models. -
A Topic-Aligned Multilingual Corpus of Wikipedia Articles for Studying Information Asymmetry in Low Resource Languages
Proceedings of the 12th Conference on Language Resources and Evaluation (LREC 2020), pages 2373–2380 Marseille, 11–16 May 2020 c European Language Resources Association (ELRA), licensed under CC-BY-NC A Topic-Aligned Multilingual Corpus of Wikipedia Articles for Studying Information Asymmetry in Low Resource Languages Dwaipayan Roy, Sumit Bhatia, Prateek Jain GESIS - Cologne, IBM Research - Delhi, IIIT - Delhi [email protected], [email protected], [email protected] Abstract Wikipedia is the largest web-based open encyclopedia covering more than three hundred languages. However, different language editions of Wikipedia differ significantly in terms of their information coverage. We present a systematic comparison of information coverage in English Wikipedia (most exhaustive) and Wikipedias in eight other widely spoken languages (Arabic, German, Hindi, Korean, Portuguese, Russian, Spanish and Turkish). We analyze the content present in the respective Wikipedias in terms of the coverage of topics as well as the depth of coverage of topics included in these Wikipedias. Our analysis quantifies and provides useful insights about the information gap that exists between different language editions of Wikipedia and offers a roadmap for the Information Retrieval (IR) community to bridge this gap. Keywords: Wikipedia, Knowledge base, Information gap 1. Introduction other with respect to the coverage of topics as well as Wikipedia is the largest web-based encyclopedia covering the amount of information about overlapping topics. -
Semantic Memory: a Review of Methods, Models, and Current Challenges
Psychonomic Bulletin & Review https://doi.org/10.3758/s13423-020-01792-x Semantic memory: A review of methods, models, and current challenges Abhilasha A. Kumar1 # The Psychonomic Society, Inc. 2020 Abstract Adult semantic memory has been traditionally conceptualized as a relatively static memory system that consists of knowledge about the world, concepts, and symbols. Considerable work in the past few decades has challenged this static view of semantic memory, and instead proposed a more fluid and flexible system that is sensitive to context, task demands, and perceptual and sensorimotor information from the environment. This paper (1) reviews traditional and modern computational models of seman- tic memory, within the umbrella of network (free association-based), feature (property generation norms-based), and distribu- tional semantic (natural language corpora-based) models, (2) discusses the contribution of these models to important debates in the literature regarding knowledge representation (localist vs. distributed representations) and learning (error-free/Hebbian learning vs. error-driven/predictive learning), and (3) evaluates how modern computational models (neural network, retrieval- based, and topic models) are revisiting the traditional “static” conceptualization of semantic memory and tackling important challenges in semantic modeling such as addressing temporal, contextual, and attentional influences, as well as incorporating grounding and compositionality into semantic representations. The review also identifies new challenges -
A Meaningful Information Extraction System for Interactive Analysis of Documents Julien Maitre, Michel Ménard, Guillaume Chiron, Alain Bouju, Nicolas Sidère
A meaningful information extraction system for interactive analysis of documents Julien Maitre, Michel Ménard, Guillaume Chiron, Alain Bouju, Nicolas Sidère To cite this version: Julien Maitre, Michel Ménard, Guillaume Chiron, Alain Bouju, Nicolas Sidère. A meaningful infor- mation extraction system for interactive analysis of documents. International Conference on Docu- ment Analysis and Recognition (ICDAR 2019), Sep 2019, Sydney, Australia. pp.92-99, 10.1109/IC- DAR.2019.00024. hal-02552437 HAL Id: hal-02552437 https://hal.archives-ouvertes.fr/hal-02552437 Submitted on 23 Apr 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. A meaningful information extraction system for interactive analysis of documents Julien Maitre, Michel Menard,´ Guillaume Chiron, Alain Bouju, Nicolas Sidere` L3i, Faculty of Science and Technology La Rochelle University La Rochelle, France fjulien.maitre, michel.menard, guillaume.chiron, alain.bouju, [email protected] Abstract—This paper is related to a project aiming at discover- edge and enrichment of the information. A3: Visualization by ing weak signals from different streams of information, possibly putting information into perspective by creating representa- sent by whistleblowers. The study presented in this paper tackles tions and dynamic dashboards. -
Knowledge Graphs on the Web – an Overview Arxiv:2003.00719V3 [Cs
January 2020 Knowledge Graphs on the Web – an Overview Nicolas HEIST, Sven HERTLING, Daniel RINGLER, and Heiko PAULHEIM Data and Web Science Group, University of Mannheim, Germany Abstract. Knowledge Graphs are an emerging form of knowledge representation. While Google coined the term Knowledge Graph first and promoted it as a means to improve their search results, they are used in many applications today. In a knowl- edge graph, entities in the real world and/or a business domain (e.g., people, places, or events) are represented as nodes, which are connected by edges representing the relations between those entities. While companies such as Google, Microsoft, and Facebook have their own, non-public knowledge graphs, there is also a larger body of publicly available knowledge graphs, such as DBpedia or Wikidata. In this chap- ter, we provide an overview and comparison of those publicly available knowledge graphs, and give insights into their contents, size, coverage, and overlap. Keywords. Knowledge Graph, Linked Data, Semantic Web, Profiling 1. Introduction Knowledge Graphs are increasingly used as means to represent knowledge. Due to their versatile means of representation, they can be used to integrate different heterogeneous data sources, both within as well as across organizations. [8,9] Besides such domain-specific knowledge graphs which are typically developed for specific domains and/or use cases, there are also public, cross-domain knowledge graphs encoding common knowledge, such as DBpedia, Wikidata, or YAGO. [33] Such knowl- edge graphs may be used, e.g., for automatically enriching data with background knowl- arXiv:2003.00719v3 [cs.AI] 12 Mar 2020 edge to be used in knowledge-intensive downstream applications. -
Omnipedia: Bridging the Wikipedia Language
Omnipedia: Bridging the Wikipedia Language Gap Patti Bao*†, Brent Hecht†, Samuel Carton†, Mahmood Quaderi†, Michael Horn†§, Darren Gergle*† *Communication Studies, †Electrical Engineering & Computer Science, §Learning Sciences Northwestern University {patti,brent,sam.carton,quaderi}@u.northwestern.edu, {michael-horn,dgergle}@northwestern.edu ABSTRACT language edition contains its own cultural viewpoints on a We present Omnipedia, a system that allows Wikipedia large number of topics [7, 14, 15, 27]. On the other hand, readers to gain insight from up to 25 language editions of the language barrier serves to silo knowledge [2, 4, 33], Wikipedia simultaneously. Omnipedia highlights the slowing the transfer of less culturally imbued information similarities and differences that exist among Wikipedia between language editions and preventing Wikipedia’s 422 language editions, and makes salient information that is million monthly visitors [12] from accessing most of the unique to each language as well as that which is shared information on the site. more widely. We detail solutions to numerous front-end and algorithmic challenges inherent to providing users with In this paper, we present Omnipedia, a system that attempts a multilingual Wikipedia experience. These include to remedy this situation at a large scale. It reduces the silo visualizing content in a language-neutral way and aligning effect by providing users with structured access in their data in the face of diverse information organization native language to over 7.5 million concepts from up to 25 strategies. We present a study of Omnipedia that language editions of Wikipedia. At the same time, it characterizes how people interact with information using a highlights similarities and differences between each of the multilingual lens. -
Towards a Korean Dbpedia and an Approach for Complementing the Korean Wikipedia Based on Dbpedia
Towards a Korean DBpedia and an Approach for Complementing the Korean Wikipedia based on DBpedia Eun-kyung Kim1, Matthias Weidl2, Key-Sun Choi1, S¨orenAuer2 1 Semantic Web Research Center, CS Department, KAIST, Korea, 305-701 2 Universit¨at Leipzig, Department of Computer Science, Johannisgasse 26, D-04103 Leipzig, Germany [email protected], [email protected] [email protected], [email protected] Abstract. In the first part of this paper we report about experiences when applying the DBpedia extraction framework to the Korean Wikipedia. We improved the extraction of non-Latin characters and extended the framework with pluggable internationalization components in order to fa- cilitate the extraction of localized information. With these improvements we almost doubled the amount of extracted triples. We also will present the results of the extraction for Korean. In the second part, we present a conceptual study aimed at understanding the impact of international resource synchronization in DBpedia. In the absence of any informa- tion synchronization, each country would construct its own datasets and manage it from its users. Moreover the cooperation across the various countries is adversely affected. Keywords: Synchronization, Wikipedia, DBpedia, Multi-lingual 1 Introduction Wikipedia is the largest encyclopedia of mankind and is written collaboratively by people all around the world. Everybody can access this knowledge as well as add and edit articles. Right now Wikipedia is available in 260 languages and the quality of the articles reached a high level [1]. However, Wikipedia only offers full-text search for this textual information. For that reason, different projects have been started to convert this information into structured knowledge, which can be used by Semantic Web technologies to ask sophisticated queries against Wikipedia. -
Span Model for Open Information Extraction on Accurate Corpus
Span Model for Open Information Extraction on Accurate Corpus Junlang Zhan1,2,3, Hai Zhao1,2,3,∗ 1Department of Computer Science and Engineering, Shanghai Jiao Tong University 2 Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering, Shanghai Jiao Tong University, Shanghai, China 3 MoE Key Lab of Artificial Intelligence, AI Institute, Shanghai Jiao Tong University [email protected], [email protected] Abstract Sentence Repeat customers can purchase luxury items at reduced prices. Open Information Extraction (Open IE) is a challenging task Extraction (A0: repeat customers; can purchase; especially due to its brittle data basis. Most of Open IE sys- A1: luxury items; A2: at reduced prices) tems have to be trained on automatically built corpus and evaluated on inaccurate test set. In this work, we first alle- viate this difficulty from both sides of training and test sets. Table 1: An example of Open IE in a sentence. The extrac- For the former, we propose an improved model design to tion consists of a predicate (in bold) and a list of arguments, more sufficiently exploit training dataset. For the latter, we separated by semicolons. present our accurately re-annotated benchmark test set (Re- OIE2016) according to a series of linguistic observation and analysis. Then, we introduce a span model instead of previ- ous adopted sequence labeling formulization for n-ary Open long short-term memory (BiLSTM) labeler and BIO tagging IE. Our newly introduced model achieves new state-of-the-art scheme which built the first supervised learning model for performance on both benchmark evaluation datasets. -
Large Semantic Network Manual Annotation 1 Introduction
Large Semantic Network Manual Annotation V´aclav Nov´ak Institute of Formal and Applied Linguistics Charles University, Prague [email protected] Abstract This abstract describes a project aiming at manual annotation of the content of natural language utterances in a parallel text corpora. The formalism used in this project is MultiNet – Multilayered Ex- tended Semantic Network. The annotation should be incorporated into Prague Dependency Treebank as a new annotation layer. 1 Introduction A formal specification of the semantic content is the aim of numerous semantic approaches such as TIL [6], DRT [9], MultiNet [4], and others. As far as we can tell, there is no large “real life” text corpora manually annotated with such markup. The projects usually work only with automatically generated annotation, if any [1, 6, 3, 2]. We want to create a parallel Czech-English corpora of texts annotated with the corresponding semantic network. 1.1 Prague Dependency Treebank From the linguistic viewpoint there language resources such as Prague Dependency Treebank (PDT) which contain a deep manual analysis of texts [8]. PDT contains annotations of three layers, namely morpho- logical, analytical (shallow dependency syntax) and tectogrammatical (deep dependency syntax). The units of each annotation level are linked with corresponding units on the preceding level. The morpho- logical units are linked directly with the original text. The theoretical basis of the treebank lies in the Functional Gener- ative Description of language system [7]. PDT 2.0 is based on the long-standing Praguian linguistic tradi- tion, adapted for the current computational-linguistics research needs. The corpus itself is embedded into the latest annotation technology.