Genetic Deletion of PKR Abrogates TNF-Induced Activation of Ijba Kinase, JNK, Akt and Cell Proliferation but Potentiates P44/P42 MAPK and P38 MAPK Activation

Total Page:16

File Type:pdf, Size:1020Kb

Genetic Deletion of PKR Abrogates TNF-Induced Activation of Ijba Kinase, JNK, Akt and Cell Proliferation but Potentiates P44/P42 MAPK and P38 MAPK Activation Oncogene (2007) 26, 1201–1212 & 2007 Nature Publishing Group All rights reserved 0950-9232/07 $30.00 www.nature.com/onc ORIGINAL ARTICLE Genetic deletion of PKR abrogates TNF-induced activation of IjBa kinase, JNK, Akt and cell proliferation but potentiates p44/p42 MAPK and p38 MAPK activation Y Takada1, H Ichikawa1, A Pataer2, S Swisher2 and BB Aggarwal1 1Cytokine Research Laboratory, Department of Experimental Therapeutics, The University of Texas MD Anderson Cancer Center, Houston, TX, USA and 2Department of Thoracic and Cardiovascular Surgery, The University of Texas MD Anderson Cancer Center, Houston, TX, USA Double-stranded RNA-dependent protein kinase (PKR), a positively regulated, whereas p44/p42 MAPK and p38 ubiquitously expressed serine/threonine kinase, has been MAPK were negatively regulated. implicated in the regulation or modulation of cell growth Oncogene (2007) 26, 1201–1212. doi:10.1038/sj.onc.1209906; through multiple signaling pathways, but how PKR published online 21 August 2006 regulates tumor necrosis factor (TNF)-induced signaling pathways is poorly understood. In the present study, we Keywords: PKR; Akt; MAPK; JNK; NF-kB; TNF; used fibroblasts derived from PKR gene-deleted mice to survival; apoptosis investigate the role of PKR in TNF-induced activation of nuclear factor-jB (NF-jB), mitogen-activated protein kinases (MAPKs) and growth modulation. We found that in wild-type mouse embryonic fibroblast (MEF), TNF induced NF-jB activation as measured by DNA binding Introduction but deletion of PKR abolished this activation. This inhibition was associated with suppression of inhibitory Double-stranded RNA (dsRNA)-dependent protein subunit of NF-jB(IjB)a kinase (IKK) activation, IjBa kinase (PKR), a ubiquitously expressed serine/threonine phosphorylation and degradation, p65 phosphorylation and kinase, has been implicated as a signal integrator in nuclear translocation, and NF-jB-dependent reporter gene translational and transcriptional control pathways transcription. TNF-induced Akt activation needed for IKK (Williams, 2001). It was initially identified as an activation was also abolished by deletion of PKR. NF-jB interferon (IFN)-induced translational inhibitor in the activation was diminished in PKR-deleted cells transfected IFN-induced antiviral pathway. However, more re- with TNF receptor (TNFR) 1, TNFR-associated death cently, PKR has been shown to mediate cell growth domain and TRAF2 plasmids; NF-jB activated by NF-jB- and stress response. It has two distinct domains, an inducing kinase, IKK or p65, however, was minimally N-terminal dsRNA-binding regulatory domain and a affected. Among the MAPKs, it was interesting that C-terminal kinase catalytic domain. Besides dsRNA and whereas TNF-induced c-Jun N-terminal kinase (JNK) IFNs, PKR has been shown to be activated by cytokines activation was abolished, activation of p44/p42 MAPK (e.g. tumor necrosis factor (TNF), interleukin (IL)-3 and and p38 MAPK was potentiated in PKR-deleted cells. platelet-derived growth factor) (Ito et al., 1994; TNF induced the expression of NF-jB-regulated gene Mundschau and Faller, 1995; Yeung et al., 1996) and products cyclin D1, c-Myc, matrix metalloproteinase-9, bacterial products (e.g. lipopolysaccharide (LPS) and survivin, X-linked inhibitor-of-apoptosis protein (IAP), lipoprotein) (Gusella et al., 1995; Jiang et al., 2003). IAP1, Bcl-xL, A1/Bfl-1 and Fas-associated death domain Once activated, PKR can phosphorylate downstream protein-like IL-1b-converting enzyme-inhibitory protein in À/À substrates, including protein phosphatase 2A (Xu and wild-type MEF but not in PKR cells. Similarly, TNF Williams, 2000) and initiation factor eIF-2 (Carroll induced the proliferation of wild-type cells, but this et al., 1993). proliferation was completely suppressed in PKR-deleted Besides protein phosphatase 2A and eIF-2, PKR has cells. Overall, our results indicate that PKR differentially alsobeen showntophysically interact with signal regulates TNF signaling; IKK, Akt and JNK were transducers and activators of transcription (STAT) 1 (Wong et al., 1997), STAT3 (Deb et al., 2001), inhibitory Correspondence: Professor BB Aggarwal, Cytokine Research Labora- subunit of NF-kB(IkB)a (Kumar et al., 1994), IkBa tory, Department of Experimental Therapeutics, The University of kinase (IKK) (Bonnet et al., 2000; Gil et al., 2000; Texas MD Anderson Cancer Center, 1515 Holcombe Boulevard, Unit Zamanian-Daryoush et al., 2000), MAPK kinase kinase 143, Houston, TX 77030, USA. E-mail: [email protected] 6 (Silva et al., 2004), cellular protein activator of PKR Received 25 April 2006; revised 11 July 2006; accepted 11 July 2006; (Patel and Sen, 1998; Peters et al., 2001), PKR- published online 21 August 2006 associated protein X (Ito et al., 1999), TNF receptor Role of PKR in TNF signaling Y Takada et al 1202 (TNFR)-associated factor (TRAF) (Gil et al., 2004), TNF induces PKR activation apoptosis signal-regulating kinase-1 (Takizawa et al., We first examined the effect of TNF on PKR activation 2002) and p53 (Cuddihy et al., 1999). PKR has alsobeen by Western blot analysis. PKR protein was only shown to regulate the expression of cyclin D1 (Kron- detected in wild-type MEF, and TNF induced the feld-Kinar et al., 1999), c-Myc (Raveh et al., 1996), activation of PKR in a time-dependent manner matrix metalloproteinase (MMP)-9 (Gilbert et al., 2004) (Figure 1b). In PKRÀ/À fibroblasts, neither activation and E-selectin (Bandyopadhyay et al., 2000), and of PKR by TNF nor expression of PKR protein was activate NF-kB (Kumar et al., 1994; Cheshire et al., detected. 1999; Zamanian-Daryoush et al., 2000; Gil et al., 2001) by a wide variety of agents (Demarchi et al., 1999; Deb PKR is required for TNF-dependent NF-kB activation et al., 2001) possibly through the activation of IKK (Gil We examined the effect of PKR deletion on TNF- et al., 2000; Ishii et al., 2001). The role of PKR in the induced NF-kB activation. Cells were stimulated with activation of p38 mitogen-activated protein kinase TNF, nuclear extracts were prepared and analysed for (MAPK) (Goh et al., 2000; Iordanov et al., 2000) and NF-kB activation by electrophoretic mobility shift c-Jun N-terminal kinase (JNK) (Iordanov et al., 2000) assays (EMSA). As shown in Figure 1c, TNF induced has also been reported. PKR has been found to be a NF-kB activation in a time-dependent manner in mediator of apoptosis induced by various agents (Yeung control fibroblasts. However, TNF-induced NF-kB et al., 1996; Balachandran et al., 1998; Srivastava et al., activation was significantly suppressed in the PKRÀ/À 1998; Gil et al., 2000). fibroblasts. TNF is a proinflammatory cytokine produced pri- Because activation of NF-kB by TNF is more robust marily by macrophages that is known to activate at higher concentrations (Chaturvedi et al., 1994), we apoptosis, NF-kB, JNK, p44/p42 MAPK and Akt determined the effect of PKR deletion on NF-kB (Aggarwal, 2003, 2004). In some cells, TNF has been activation induced by higher concentrations of TNF shown to promote proliferation of cells. Sequential (Figure 1d). At a concentration of 1000 pM, TNF recruitment of TNFR, TNFR-associated death domain induced NF-kB activity strongly in wild-type cells but (TRADD), TRAF2, receptor-interacting protein and not in PKRÀ/À cells. These results show that PKR is IKK leads toNF- kB activation by TNF; TRAF2 is also required for TNF-induced NF-kB activation. required for the activation of various MAPKs by TNF Because various combinations of Rel/NF-kB protein (Aggarwal, 2003, 2004). Similarly, sequential interaction can constitute an active NF-kB heterodimer that binds of TNF with TNFR, TRADD, Fas-associated death toa specific DNA sequence (Ghosh and Karin, 2002), domain protein (FADD), FADD-like IL-1b-converting we next determined whether the retarded band visua- enzyme (FLICE) and caspase-3 leads to apoptosis lized by EMSA in TNF-treated cells was indeed NF-kB. (Aggarwal, 2003, 2004). The signals required for the We incubated nuclear extracts from TNF-stimulated induction of cell proliferation by TNF, however, are cells with antibodies to either the p50 (NF-kB1) or p65 less well understood. p44/p42 MAPK is most likely (RelA) subunit of NF-kB. Both shifted the band to a needed for the TNF-induced proliferation of fibroblasts higher molecular mass (Figure 1e), suggesting that the (Aggarwal, 2003, 2004), but the role PKR plays in this TNF-activated complex consisted of p50 and p65 aspect of TNF signaling is less clear. Although there are subunits. Preimmune serum had noeffect. Excess un- some reports implicating PKR in TNF-induced apopto- labeled NF-kB (100-fold) caused complete disappearance sis, its role in TNF-induced NF-kB and MAPK activa- of the band, but the mutant oligonucleotide of NF-kB tion is controversial (Maran et al., 1994; Kumar et al., did not affect NF-kB-binding activity. 1997; Cheshire et al., 1999; Zamanian-Daryoush et al., 2000). In the current report, we used genetically PKR- deleted cells tosystematically investigate the role ofPKR PKR is required for TNF-dependent IkBa degradation in TNF signaling. Our results indicate that PKR plays a Translocation of NF-kB tothe nucleus is preceded by differential role in TNF-induced signal transduction. proteolytic degradation of IkBa (Ghosh and Karin, 2002). To determine whether inhibition of TNF-induced NF-kB activation in PKRÀ/À cells was due toinhibition Results ofIkBa degradation, we exposed cells to TNF for the indicated intervals and assayed for degradation of IkBa The aim of this study was to investigate the effects of by Western blot analysis. TNF induced IkBa degrada- PKR on TNF signaling. This proinflammatory cytokine tion, which preceded NF-kB translocation by as much À/À has been shown to activate NF-kB through IKK and to as 10 min in wild-type fibroblasts.
Recommended publications
  • Signaling in the Type I Interferon Antiviral Innate Immune Response
    Signaling in the type I interferon antiviral innate Most vertebrate cells respond to viral infection by producing and sensing NF-κB, transcription factors that trigger the expression of genes encod- immune response type I interferon (IFN), which establishes an antiviral state characterized ing type I IFN proteins and other mediators of innate immune activation. by inhibition of viral replication, apoptosis of infected cells, and stimu- Type I IFN proteins bind to the type I IFN receptor and activate Janus ki- David E Levy & Isabelle J Marié lation of innate immune mechanisms that augment subsequent adaptive nase–signal transducer and activator of transcription (Jak-STAT) signaling 4,2 immune responses. Vertebrate cells detect virus infection either via the and formation of the trimeric transcription factor complex ISGF3, which #$ cytoplasmic RNA helicase sensors RIG-I and MDA-5, the cytoplasmic promotes expression of antiviral effector proteins as well as proteins that -$ DNA-dependent activator of IFN-regulatory factor (DAI), and/or via a positively and negatively modulate subsequent signaling. This poster high- pathway initiated by transmembrane Toll-like receptors (TLRs). All path- lights common and distinct components of these pathways that together ways culminate in activation of interferon regulatory factor (IRF) and lead to a highly orchestrated innate immune response to viral infection. 42!- -!, 42)& -Y$ Pathogen recognition: the cytosolic pathway and TYK2 kinases, respectively. IFN binding results in kinase Many viruses replicate in the cell cytoplasm after invading cells activation, receptor phosphorylation, and STAT protein recruit- )2!+ 2)0 by fusion either with the plasma membrane or with endosomal ment and tyrosine phosphorylation.
    [Show full text]
  • Abx651433 Datasheet.Pdf
    Datasheet Version: 3.0.0 Revision date: 23 Apr 2021 Human Protein Kinase R (PKR) Protein (Active) Catalogue No.:abx651433 SDS-PAGE analysis of recombinant Human PKR. Western blot analysis of recombinant Human PKR, using PKR antibody (abx128520). Gene sequencing extract of recombinant Human PKR. Binding activity of PKR with CDK1. For Reference Only Human Protein Kinase R (PKR) Protein (Active) is a recombinant active Human protein expressed in E. coli. Target: Protein Kinase R (PKR) Origin: Human Tested Applications: WB, SDS-PAGE v1.0.0 Abbexa LTD, Cambridge, UK · Phone: +44 (0) 1223 755950 · Fax: +44 (0) 1223 755951 1 of 3 Abbexa LLC, Houston, TX USA · Phone: +1 832 327 7413 Website: www.abbexa.com · Email: [email protected] Datasheet Version: 3.0.0 Revision date: 23 Apr 2021 Host: E. coli Conjugation: Unconjugated Form: Lyophilized Purity: > 80% Reconstitution: Reconstitute to the original concentration in ddH2O. If further dilutions are required, dilute in 20 mM Tris, 150 mM NaCl, pH 8.0, to a concentration of 0.1-1.0 mg/ml. Do not vortex. Storage: Store at 2-8 °C for up to one month. Store at -80 °C for up to one year. Avoid repeated freeze/thaw cycles. UniProt Primary AC: P19525 (UniProt, ExPASy) KEGG: hsa:5610 String: 9606.ENSP00000233057 Molecular Weight: Calculated MW: 35.8 kDa Observed MW: 32 kDa Possible reasons why the actual band size differs from the predicted band size: 1. Splice variants. Alternative splicing may create different sized proteins from the same gene. 2. Relative charge. The composition of amino acids may affect the charge of the protein.
    [Show full text]
  • Muscle Wasting in Myotonic Dystrophies: a Model of Premature Aging
    REVIEW published: 09 July 2015 doi: 10.3389/fnagi.2015.00125 Muscle wasting in myotonic dystrophies: a model of premature aging Alba Judith Mateos-Aierdi 1,2, Maria Goicoechea 1,2, Ana Aiastui 2,3, Roberto Fernández-Torrón 1,2,4, Mikel Garcia-Puga 5, Ander Matheu 5 and Adolfo López de Munain 1,2,4,6* 1 Neuroscience Area, Biodonostia Health Research Institute, San Sebastián, Spain, 2 CIBERNED, Instituto Carlos III, Ministerio de Economía y Competitividad, Madrid, Spain, 3 Cell Culture Platform, Biodonostia Health Research Institute, San Sebastián, Spain, 4 Department of Neurology, Hospital Universitario Donostia, San Sebastián, Spain, 5 Oncology Area, Biodonostia Health Research Institute, San Sebastián, Spain, 6 Department of Neuroscience, Universidad del País Vasco UPV-EHU, San Sebastián, Spain Myotonic dystrophy type 1 (DM1 or Steinert’s disease) and type 2 (DM2) are multisystem disorders of genetic origin. Progressive muscular weakness, atrophy and myotonia are the most prominent neuromuscular features of these diseases, while other clinical manifestations such as cardiomyopathy, insulin resistance and cataracts are also common. From a clinical perspective, most DM symptoms are interpreted as a result of an accelerated aging (cataracts, muscular weakness and atrophy, cognitive decline, metabolic dysfunction, etc.), including an increased Edited by: Jaime J. Carvajal, risk of developing tumors. From this point of view, DM1 could be described as Centro Andaluz de Biología del a progeroid syndrome since a notable age-dependent dysfunction of all systems Desarrollo, Spain occurs. The underlying molecular disorder in DM1 consists of the existence of Reviewed by: a pathological (CTG) triplet expansion in the 3’ untranslated region (UTR) of the John Charles McDermott, York University, Canada Dystrophia Myotonica Protein Kinase (DMPK) gene, whereas (CCTG)n repeats in Daniela Palacios, the first intron of the Cellular Nucleic acid Binding Protein/Zinc Finger Protein Fondazione Santa Lucia, Italy 9 (CNBP/ZNF9) gene cause DM2.
    [Show full text]
  • Double Stranded RNA Dependent Protein Kinase (PKR) and Type 2 Diabetes
    Pharmacy & Pharmacology International Journal Mini Review Open Access Double stranded RNA dependent protein kinase (PKR) and type 2 diabetes Abstract Volume 2 Issue 2 - 2015 Type 2 diabetes greatly increases the risk for developing cardiovascular and metabolic Arti Dhar,1 Priyanka Reddy,1 Audesh Bhat,2 disorders. Despite recent development in medical science, scientific understandings 3 on the root mechanisms of type 2 diabetes are still not fully understood, and such Indu Dhar 1Department of Pharmacy, Birla Institute of Technology and insufficient understanding contributes to the relative lack of effective treatments Sciences Pilani, India for such diseases. Protein Kinase R (PKR) is a serine threonine kinase activated 2Department of Microbiology & Immunology, University of during various stress conditions. Activation of PKR can increase reactive oxygen Saskatchewan, Canada species generation, inflammation and induce oxidative stress. In this review we 3Department of Pharmacology, University of Saskatchewan, discuss the potential role of PKR in type 2 diabetes, pathways activated by it and Canada the interrelationship between pathways activated. Specific and effective inhibitors of PKR are being developed and can become potential treatment for type 2 diabetes and Correspondence: Arti Dhar, Department of Pharmacy, Birla prevent many diseases. Institute of Technology and Sciences Pilani, Jawahar Nagar, Shameerpet, Hyderabad, Andhra Pradesh 500078, India, Tel Keywords: PKR, type 2 diabetes, inflammation, insulin resistance 04066303647, Email [email protected] Received: February 28, 2015 | Published: March 26, 2015 Abbreviations: PKR, protein kinase r; ER, endoplasmic reti- Type 2 diabetes is associated with elevated blood glucose levels, culum; Nfkb, nuclear factor kappa-light-chain-enhancer of activated b which in turn will affect plasma insulin levels.
    [Show full text]
  • Pre-Mrna Splicing and Human Disease
    Downloaded from genesdev.cshlp.org on October 1, 2021 - Published by Cold Spring Harbor Laboratory Press REVIEW Pre-mRNA splicing and human disease Nuno Andre´Faustino1,3 and Thomas A.Cooper 1,2,4 Departments of 1Pathology and 2Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas 77030, USA; 3Graduate Program in Basic and Applied Biology, ICBAS, University of Oporto, Portugal The precision and complexity of intron removal during snRNP binds the branch site via RNA:RNA interactions pre-mRNA splicing still amazes even 26 years after the between the snRNA and the pre-mRNA (Fig. 1B). Spli- discovery that the coding information of metazoan genes ceosome assembly is highly dynamic in that complex is interrupted by introns (Berget et al. 1977; Chow et al. rearrangements of RNA:RNA, RNA:protein, and pro- 1977). Adding to this amazement is the recent realiza- tein:protein interactions take place within the spliceo- tion that most human genes express more than one some. Coinciding with these internal rearrangements, mRNA by alternative splicing, a process by which func- both splice sites are recognized multiple times by inter- tionally diverse protein isoforms can be expressed ac- actions with different components during the course of cording to different regulatory programs. Given that the spliceosome assembly (for example, see Burge et al. 1999; vast majority of human genes contain introns and that Du and Rosbash 2002; Lallena et al. 2002; Liu 2002). The most pre-mRNAs undergo alternative splicing, it is not catalytic component is likely to be U6 snRNP, which surprising that disruption of normal splicing patterns joins the spliceosome as a U4/U6 · U5 tri-snRNP (Villa can cause or modify human disease.
    [Show full text]
  • PDF Hosted at the Radboud Repository of the Radboud University Nijmegen
    PDF hosted at the Radboud Repository of the Radboud University Nijmegen The following full text is a publisher's version. For additional information about this publication click this link. http://hdl.handle.net/2066/85871 Please be advised that this information was generated on 2021-09-29 and may be subject to change. ISOFORMS IN MUSCLE AND BRAIN CELLS localization and function • ralph j.a. oude ophuis • 2011 9 789088 912344 > ISBN 978-90-8891234,-4 DMPK ISOFORMS IN MUSCLE AND BRAIN CELLS LOCALIZATION AND FUNCTION Voor het bijwonen van de openbare verdediging van het proefschrift van RALPH J.A. OUDE OPHUIS DMPK ISOFORMS IN MUSCLE AND BRAIN CELLS LOCALIZATION AND FUNCTION op vrijdag 1 april 2011 om 13:00u precies in de Aula van de Radboud Universiteit Nijmegen aan de Comeniuslaan 2 te Nijmegen Na afloop van de verdediging is er een receptie ter plaatse PARANIMFEN Susan Mulders [email protected] Rinske van de Vorstenbosch r.vandevorstenbosch(§) ncmls.ru.nl DMPK ISOFORMS IN MUSCLE AND BRAIN CELLS LOCALIZATION AND FUNCTION ISBN-13 978-90-8891234-4 ISBN-10 90-8891-234-3 Printed by Proefsohriftmaken.nl || Printyourthesis.com Published by Uitgeverij BOXPress, Oisterwijk DMPK ISOFORMS IN MUSCLE AND BRAIN CELLS LOCALIZATION AND FUNCTION Een wetenschappelijke proeve op het gebied van de Medische Wetenschappen Proefschrift ter verkrijging van de graad van doctor aan de Radboud Universiteit Nijmegen op gezag van de rector magnificus prof. mr. S.C.J.J. Kortmann, volgens besluit van het college van decanen in het openbaar te verdedigen op vrijdag 1 april 2011 om 13:00 uur precies door Raphaël Johannes Antonius Oude Ophuis geboren op 24 oktober 1978 te Sint-Oedenrode Promotor Prof.
    [Show full text]
  • Stress Granules in Infected Cells Regulation of PKR Phosphorylation
    NF90 Exerts Antiviral Activity through Regulation of PKR Phosphorylation and Stress Granules in Infected Cells This information is current as Xi Wen, Xiaofeng Huang, Bobo Wing-Yee Mok, Yixin of September 28, 2021. Chen, Min Zheng, Siu-Ying Lau, Pui Wang, Wenjun Song, Dong-Yan Jin, Kwok-Yung Yuen and Honglin Chen J Immunol published online 12 March 2014 http://www.jimmunol.org/content/early/2014/03/12/jimmun ol.1302813 Downloaded from Why The JI? Submit online. http://www.jimmunol.org/ • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average by guest on September 28, 2021 Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2014 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. Published March 12, 2014, doi:10.4049/jimmunol.1302813 The Journal of Immunology NF90 Exerts Antiviral Activity through Regulation of PKR Phosphorylation and Stress Granules in Infected Cells Xi Wen,*,† Xiaofeng Huang,*,† Bobo Wing-Yee Mok,*,† Yixin Chen,‡ Min Zheng,*,† Siu-Ying Lau,*,† Pui Wang,*,† Wenjun Song,*,† Dong-Yan Jin,x Kwok-Yung Yuen,*,† and Honglin Chen*,† NF90 was shown to exhibit broad antiviral activity against several viruses, but detailed mechanisms remain unclear.
    [Show full text]
  • 1011.Full.Pdf
    Supplemental material to this article can be found at: http://molpharm.aspetjournals.org/content/suppl/2015/10/05/mol.115.100917.DC1 1521-0111/88/6/1011–1023$25.00 http://dx.doi.org/10.1124/mol.115.100917 MOLECULAR PHARMACOLOGY Mol Pharmacol 88:1011–1023, December 2015 Copyright ª 2015 by The American Society for Pharmacology and Experimental Therapeutics Long-Range Inhibitor-Induced Conformational Regulation of Human IRE1a Endoribonuclease Activity s Nestor O. Concha, Angela Smallwood, William Bonnette, Rachel Totoritis, Guofeng Zhang, Kelly Federowicz, Jingsong Yang, Hongwei Qi, Stephanie Chen, Nino Campobasso, Anthony E. Choudhry, Leanna E. Shuster, Karen A. Evans, Jeff Ralph, Sharon Sweitzer, Dirk A. Heerding, Carolyn A. Buser, Dai-Shi Su, and M. Phillip DeYoung Oncology R&D (K.F., J.Y., L.E.S., K.A.E., J.R., D.A.H., C.A.B., D.S.S, M.P.D.), Biological Sciences (R.T., G.Z., H.Q., S.C., A.E.C., S.S.), and Chemical Sciences, GlaxoSmithKline Research and Development, Collegeville, Pennsylvania (N.O.C., A.S., W.B., N.C.) Downloaded from Received July 20, 2015; accepted September 25, 2015 ABSTRACT Activation of the inositol-requiring enzyme-1 alpha (IRE1a) pro- kinase activation loop to the DFG-out conformation. Inactiva- tein caused by endoplasmic reticulum stress results in the tion of IRE1a RNase activity appears to be caused by a molpharm.aspetjournals.org homodimerization of the N-terminal endoplasmic reticulum conformational change, whereby the aC helix is displaced, luminal domains, autophosphorylation of the cytoplasmic ki- resulting in the rearrangement of the kinase domain-dimer nase domains, and conformational changes to the cytoplasmic interface and a rotation of the RNase domains away from each endoribonuclease (RNase) domains, which render them func- other.
    [Show full text]
  • Microrna Regulation and Human Protein Kinase Genes
    MICRORNA REGULATION AND HUMAN PROTEIN KINASE GENES REQUIRED FOR INFLUENZA VIRUS REPLICATION by LAUREN ELIZABETH ANDERSEN (Under the Direction of Ralph A. Tripp) ABSTRACT Human protein kinases (HPKs) have profound effects on cellular responses. To better understand the role of HPKs and the signaling networks that influence influenza replication, a siRNA screen of 720 HPKs was performed. From the screen, 17 “hit” HPKs (NPR2, MAP3K1, DYRK3, EPHA6, TPK1, PDK2, EXOSC10, NEK8, PLK4, SGK3, NEK3, PANK4, ITPKB, CDC2L5, CALM2, PKN3, and HK2) were validated as important for A/WSN/33 influenza virus replication, and 6 HPKs (CDC2L5, HK2, NEK3, PANK4, PLK4 and SGK3) identified as important for A/New Caledonia/20/99 influenza virus replication. Meta-analysis of the hit HPK genes identified important for influenza virus replication showed a level of overlap, most notably with the p53/DNA damage pathway. In addition, microRNAs (miRNAs) predicted to target the validated HPK genes were determined based on miRNA seed site predictions from computational analysis and then validated using a panel of miRNA agonists and antagonists. The results identify miRNA regulation of hit HPK genes identified, specifically miR-148a by targeting CDC2L5 and miR-181b by targeting SGK3, and suggest these miRNAs also have a role in regulating influenza virus replication. Together these data advance our understanding of miRNA regulation of genes critical for virus replication and are important for development novel influenza intervention strategies. INDEX WORDS: Influenza virus,
    [Show full text]
  • Correction of RNA-Binding Protein CUGBP1 and GSK3 Signaling As
    International Journal of Molecular Sciences Review Correction of RNA-Binding Protein CUGBP1 and GSK3β Signaling as Therapeutic Approach for Congenital and Adult Myotonic Dystrophy Type 1 Lubov Timchenko Departments of Neurology and Pediatrics, Cincinnati Children’s Hospital Medical Center and the University of Cincinnati, Cincinnati, OH 45229, USA; [email protected]; Tel.: +1-513-803-0768 Received: 26 November 2019; Accepted: 17 December 2019; Published: 21 December 2019 Abstract: Myotonic dystrophy type 1 (DM1) is a complex genetic disease affecting many tissues. DM1 is caused by an expansion of CTG repeats in the 30-UTR of the DMPK gene. The mechanistic studies of DM1 suggested that DMPK mRNA, containing expanded CUG repeats, is a major therapeutic target in DM1. Therefore, the removal of the toxic RNA became a primary focus of the therapeutic development in DM1 during the last decade. However, a cure for this devastating disease has not been found. Whereas the degradation of toxic RNA remains a preferential approach for the reduction of DM1 pathology, other approaches targeting early toxic events downstream of the mutant RNA could be also considered. In this review, we discuss the beneficial role of the restoring of the RNA-binding protein, CUGBP1/CELF1, in the correction of DM1 pathology. It has been recently found that the normalization of CUGBP1 activity with the inhibitors of GSK3 has a positive effect on the reduction of skeletal muscle and CNS pathologies in DM1 mouse models. Surprisingly,the inhibitor of GSK3, tideglusib also reduced the toxic CUG-containing RNA. Thus, the development of the therapeutics, based on the correction of the GSK3β-CUGBP1 pathway, is a promising option for this complex disease.
    [Show full text]
  • PKR Is Activated by Cellular Dsrnas During Mitosis and Acts As a Mitotic Regulator
    Downloaded from genesdev.cshlp.org on September 29, 2021 - Published by Cold Spring Harbor Laboratory Press PKR is activated by cellular dsRNAs during mitosis and acts as a mitotic regulator Yoosik Kim,1,2 Jung Hyun Lee,1,2 Jong-Eun Park,1,2 Jun Cho,1,2 Hyerim Yi,1,2 and V. Narry Kim1,2,3 1Center for RNA Research, Institute for Basic Science, Seoul 151-742, Korea; 2School of Biological Sciences, Seoul National University, Seoul 151-742, Korea dsRNA-dependent protein kinase R (PKR) is a ubiquitously expressed enzyme well known for its roles in immune response. Upon binding to viral dsRNA, PKR undergoes autophosphorylation, and the phosphorylated PKR (pPKR) regulates translation and multiple signaling pathways in infected cells. Here, we found that PKR is activated in uninfected cells, specifically during mitosis, by binding to dsRNAs formed by inverted Alu repeats (IRAlus). While PKR and IRAlu-containing RNAs are segregated in the cytosol and nucleus of interphase cells, respectively, they interact during mitosis when nuclear structure is disrupted. Once phosphorylated, PKR suppresses global translation by phosphorylating the a subunit of eukaryotic initiation factor 2 (eIF2a). In addition, pPKR acts as an upstream kinase for c-Jun N-terminal kinase and regulates the levels of multiple mitotic factors such as CYCLINS A and B and POLO-LIKE KINASE 1 and phosphorylation of HISTONE H3. Disruption of PKR activation via RNAi or expression of a transdominant-negative mutant leads to misregulation of the mitotic factors, delay in mitotic progression, and defects in cytokinesis. Our study unveils a novel function of PKR and endogenous dsRNAs as signaling molecules during the mitosis of uninfected cells.
    [Show full text]
  • The Structure, Activation and Signaling of IRE1 and Its Role in Determining Cell Fate
    biomedicines Review The Structure, Activation and Signaling of IRE1 and Its Role in Determining Cell Fate Natalia Siwecka 1, Wioletta Rozp˛edek-Kami´nska 1 , Adam Wawrzynkiewicz 1, Dariusz Pytel 1,2, J. Alan Diehl 2,3 and Ireneusz Majsterek 1,* 1 Department of Clinical Chemistry and Biochemistry, Medical University of Lodz, 90-419 Lodz, Poland; [email protected] (N.S.); [email protected] (W.R.-K.); [email protected] (A.W.); [email protected] or [email protected] (D.P.) 2 Hollings Cancer Center, Department of Biochemistry and Molecular Biology, Medical University of South Carolina, Charleston, SC 29425, USA; [email protected] 3 Department of Biochemistry, School of Medicine, Case Western Reserve University, Cleveland, OH 44106, USA * Correspondence: [email protected]; Tel.: +48-42-272-53-00 Abstract: Inositol-requiring enzyme type 1 (IRE1) is a serine/threonine kinase acting as one of three branches of the Unfolded Protein Response (UPR) signaling pathway, which is activated upon endoplasmic reticulum (ER) stress conditions. It is known to be capable of inducing both pro-survival and pro-apoptotic cellular responses, which are strictly related to numerous human pathologies. Among others, IRE1 activity has been confirmed to be increased in cancer, neurodegeneration, inflammatory and metabolic disorders, which are associated with an accumulation of misfolded proteins within ER lumen and the resulting ER stress conditions. Emerging evidence suggests that genetic or pharmacological modulation of IRE1 may have a significant impact on cell viability, and thus may be a promising step forward towards development of novel therapeutic strategies.
    [Show full text]