Widespread Expression of Netrin-1 by Neurons and Oligodendrocytes in the Adult Mammalian Spinal Cord
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UNIVERSITY of CALIFORNIA, IRVINE Netrin-Mediated Signaling
UNIVERSITY OF CALIFORNIA, IRVINE Netrin-mediated signaling directs central neuron dendrite growth and connectivity in the developing vertebrate visual system DISSERTATION submitted in partial satisfaction of the requirements for the degree of DOCTOR OF PHILOSOPHY in Biological Sciences by Anastasia Nicole Nagel Dissertation Committee: Professor Susana Cohen-Cory, Chair Associate Professor Karina S. Cramer Professor Georg F. Striedter 2015 © 2015 Anastasia Nicole Nagel DEDICATION To those who have supported me in my pursuit of understanding the natural world: my husband, family, friends and those who we have lost along the way but who remain present in spirit. “There are naive questions, tedious questions, ill-phrased questions, questions put after inadequate self-criticism. But every question is a cry to understand the world. There is no such thing as a dumb question.” Carl Sagan, The Demon-Haunted World: Science as a Candle in the Dark ii TABLE OF CONTENTS Page LIST OF FIGURES iv ACKNOWLEDGMENTS vi CURRICULUM VITAE vii ABSTRACT OF THE DISSERTATION x INTRODUCTION 1 CHAPTER 1: Molecular signals regulate visual system development 4 Netrin regulates neurodevelopment through diverse receptor binding 9 The role of netrin-1 in retinotectal circuit formation 19 Summary and objectives 27 CHAPTER 2: Netrin directs dendrite growth and connectivity in vivo 29 Introduction 29 Materials and Methods 31 Results 36 Discussion 64 CHAPTER 3: DCC and UNC5 Netrin receptor signaling guides dendritogenesis 70 Introduction 70 Materials and Methods 72 Results 77 Discussion 102 CHAPTER 4: Decreases in Netrin signaling impact visual system function 113 Introduction 113 Materials and Methods 114 Results 116 Discussion 121 CHAPTER 5: Summary and Conclusions 122 REFERENCES 129 iii LIST OF FIGURES Page Figure 1.1 Neuron during general developmental processes 5 Figure 1.2 Signaling molecules that direct visual system formation 8 Figure 1.3 Schematic representation of a netrin-1 gradient in the spinal cord 13 Figure 1.4 Diagram of the X. -
Understanding Axon Guidance: Are We Nearly There Yet?
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2018 Understanding axon guidance: are we nearly there yet? Stoeckli, Esther T Abstract: During nervous system development, neurons extend axons to reach their targets and form functional circuits. The faulty assembly or disintegration of such circuits results in disorders of the nervous system. Thus, understanding the molecular mechanisms that guide axons and lead to neural circuit formation is of interest not only to developmental neuroscientists but also for a better comprehension of neural disorders. Recent studies have demonstrated how crosstalk between different families of guidance receptors can regulate axonal navigation at choice points, and how changes in growth cone behaviour at intermediate targets require changes in the surface expression of receptors. These changes can be achieved by a variety of mechanisms, including transcription, translation, protein-protein interactions, and the specific trafficking of proteins and mRNAs. Here, I review these axon guidance mechanisms, highlighting the most recent advances in the field that challenge the textbook model of axon guidance. DOI: https://doi.org/10.1242/dev.151415 Posted at the Zurich Open Repository and Archive, University of Zurich ZORA URL: https://doi.org/10.5167/uzh-166034 Journal Article Published Version Originally published at: Stoeckli, Esther T (2018). Understanding axon guidance: are we nearly there yet? Development, 145(10):dev151415. DOI: https://doi.org/10.1242/dev.151415 © 2018. Published by The Company of Biologists Ltd | Development (2018) 145, dev151415. doi:10.1242/dev.151415 REVIEW Understanding axon guidance: are we nearly there yet? Esther T. -
Promotion of Neurite Outgrowth and Axon Guidance in Spiral Ganglion Cells by Netrin-1
ORIGINAL ARTICLE Promotion of Neurite Outgrowth and Axon Guidance in Spiral Ganglion Cells by Netrin-1 Kenneth H. Lee, MD, PhD; Mark E. Warchol, PhD Objective: To identify the expression of netrin-1, a Results: Netrin-1 and DCC mRNA expression were found diffusible chemoattractive molecule, and its receptor, in the mouse organ of Corti and spiral ganglion cells by deleted in colorectal carcinoma (DCC), in the devel- RT-PCR. Application of exogenous netrin-1 led to a dos- opmentally mature inner ear, and to determine its age-dependent increase in neurite length in cultured spi- effects on axon length and guidance in cultured auditory ral ganglion cells. Chick acoustic ganglion cells cocul- neurons. tured with netrin-1–secreting cells demonstrated statistically significant preferential extension toward the source of netrin-1 (P =.04). Design: Messenger RNA (mRNA) and protein expres- sion of netrin-1 and DCC were identified in the organ of Conclusions: Netrin-1 and DCC are expressed in the or- Corti and spiral ganglion cells using reverse transcription– gan of Corti and spiral ganglion cells of developmen- polymerase chain reaction (RT-PCR) and fluorescence tally mature mice. Exogenous netrin-1 promotes dosage- immunohistochemical analysis. In vitro experiments ex- dependent neurite growth in vitro. Mature auditory amined the effects of exogenous netrin-1 on spiral gan- neurons preferentially direct neurite extension toward glion cell axon length. Auditory neurons were cocul- netrin-1 released in culture. These findings may lead to tured with a cell line secreting netrin-1 to determine the the development of strategies to optimize the interface effect on direction of axon extension. -
Integrinɑ3 Is Required for Late Postnatal Stability of Dendrite
6742 • The Journal of Neuroscience, April 17, 2013 • 33(16):6742–6752 Cellular/Molecular Integrin ␣3 Is Required for Late Postnatal Stability of Dendrite Arbors, Dendritic Spines and Synapses, and Mouse Behavior Meghan E. Kerrisk,1 Charles A. Greer,2,3,4 and Anthony J. Koleske1,2,4,5 Departments of 1Molecular Biophysics and Biochemistry, 2Neurobiology, and 3Neurosurgery, and 4Interdepartmental Neuroscience Program, Yale University, New Haven, Connecticut 06520, and 5Program in Cellular Neuroscience, Neurodegeneration, and Repair, Yale University, New Haven, Connecticut 06536 Most dendrite branches and a large fraction of dendritic spines in the adult rodent forebrain are stable for extended periods of time. Destabilization of these structures compromises brain function and is a major contributing factor to psychiatric and neurodegenerative diseases. Integrins are a class of transmembrane extracellular matrix receptors that function as ␣ heterodimers and activate signaling cascades regulating the actin cytoskeleton. Here we identify integrin ␣3 as a key mediator of neuronal stability. Dendrites, dendritic spines, and synapses develop normally in mice with selective loss of integrin ␣3 in excitatory forebrain neurons, reaching their mature sizes and densities through postnatal day 21 (P21). However, by P42, integrin ␣3 mutant mice exhibit significant reductions in hippocam- pal dendrite arbor size and complexity, loss of dendritic spine and synapse densities, and impairments in hippocampal-dependent behavior. Furthermore, gene-dosage experiments demonstrate that integrin ␣3 interacts functionally with the Arg nonreceptor tyrosine kinase to activate p190RhoGAP, which inhibits RhoA GTPase and regulates hippocampal dendrite and synapse stability and mouse behavior. Together, our data support a fundamental role for integrin ␣3 in regulating dendrite arbor stability, synapse maintenance, and proper hippocampal function. -
Turning of Retinal Growth Cones in a Netrin-1 Gradient Mediated by the Netrin Receptor DCC
Neuron, Vol. 19, 1211±1224, December, 1997, Copyright 1997 by Cell Press Turning of Retinal Growth Cones in a Netrin-1 Gradient Mediated by the Netrin Receptor DCC Jose R. de la Torre,* Veit H. HoÈ pker,² Guo-li Ming,² project to the midline (Harris et al., 1996; Mitchell et al., Mu-ming Poo,² Marc Tessier-Lavigne,*§ 1996). In addition to their apparent roles in attraction, ³ ² Ali Hemmati-Brivanlou, and Christine E. Holt k the netrins have been implicated as repellents of axons *Howard Hughes Medical Institute that migrate away from the midline in both C. elegans Departments of Anatomy and vertebrates (Colamarino and Tessier-Lavigne, 1995; and of Biochemistry and Biophysics Wadsworth et al., 1996; Varela-Echavarria et al., 1997). University of California Furthermore, genetic and biochemical evidence sug- San Francisco, California 94143-0452 gests that the attractive and repulsive actions of netrin ² Department of Biology proteins might involve different functional domains of University of California the netrin molecules and may be mediated by distinct San Diego, California 92039 receptor mechanisms (Hedgecock et al., 1990; Leung- ³ The Rockefeller University Hagesteijn et al., 1992; Chan et al., 1996; Keino-Masu New York, New York 10021-6399 et al., 1996; Kolodziej et al., 1996; Wadsworth et al., 1996; Ackerman et al., 1997; Leonardo et al., 1997). In addition to this role in midline guidance, studies in a Summary variety of vertebrate species have implicated netrins in guidance in many different regions of the nervous sys- Netrin-1 promotes outgrowth of axons in vitro through tem apart from midline regions (Kennedy et al., 1994; the receptor Deleted in Colorectal Cancer (DCC) and Serafini et al., 1996; Shirasaki et al., 1996; Lauderdale elicits turning of axons within embryonic explants et al., 1997; Livesey and Hunt, 1997; Me tin et al., 1997; when presented as a point source. -
The Role of Pioneer Neurons in Guidance and Fasciculation in the CNS of Drosophila
Development 124, 3253-3262 (1997) 3253 Printed in Great Britain © The Company of Biologists Limited 1997 DEV1201 Targeted neuronal ablation: the role of pioneer neurons in guidance and fasciculation in the CNS of Drosophila A. Hidalgo† and A. H. Brand* The Wellcome/CRC Institute, and Department of Genetics, Cambridge University, Tennis Court Road, Cambridge, CB2 1QR, UK *Author for correspondence †Present address: Department of Genetics, Cambridge University, Downing Street, Cambridge CB2 3EH, UK SUMMARY Although pioneer neurons are the first to delineate the axon formation, (2) the interaction between two pioneers is pathways, it is uncertain whether they have unique necessary for the establishment of each fascicle and (3) pathfinding abilities. As a first step in defining the role of pioneer neurons function synergistically to establish the pioneer neurons in the Drosophila embryonic CNS, we longitudinal axon tracts, to guide the fasciculation of describe the temporal profile and trajectory of the axons of follower neurons along specific fascicles and to prevent four pioneer neurons and show that they differ from pre- axons from crossing the midline. viously published reports. We show, by targeted ablation of one, two, three or four pioneer neurons at a time, that (1) Key words: pioneer neurons, cell ablation, CNS, Drosophila, axon no single pioneer neuron is essential for axon tract pathway, neuron INTRODUCTION P pioneer neurons, or that the timing of axon outgrowth is crucial. For example, the A and P neurons may follow cues on The first neurons to extend their axons, the ‘pioneer’ neurons glial cells that the G neuron cannot recognise, or that are not (Bate, 1976), navigate in an environment devoid of other present at the time the G axon grows out. -
Phosphorylation of DCC by ERK2 Is Facilitated By&Nbsp;Direct Docking of the Receptor P1 Domain To&Nbsp;The&Nbsp;Kina
Structure Article Phosphorylation of DCC by ERK2 Is Facilitated by Direct Docking of the Receptor P1 Domain to the Kinase Wenfu Ma,1,2 Yuan Shang,3 Zhiyi Wei,3 Wenyu Wen,1,2 Wenning Wang,1,2,* and Mingjie Zhang1,2,3,* 1Department of Chemistry 2Institute of Biomedical Sciences Fudan University, Shanghai, P.R. China 3Division of Life Science, Molecular Neuroscience Center, State Key Laboratory of Molecular Neuroscience, Hong Kong University of Science and Technology, Clearwater Bay, Kowloon, Hong Kong, P. R. China *Correspondence: [email protected] (W.W.), [email protected] (M.Z.) DOI 10.1016/j.str.2010.08.011 SUMMARY domains or catalytic activity have been identified thus far for the DCC cytoplasmic domain. Both in vitro and in vivo studies Netrin receptor DCC plays critical roles in many have demonstrated that the attractive response of DCC to cellular processes, including axonal outgrowth and netrins specifically originates from the cytoplasmic domain of migration, angiogenesis, and apoptosis, but the the receptor, as a chimera DCC in which the extracellular portion molecular basis of DCC-mediated signaling is largely of DCC is fused with the cytoplasmic part of UNC5 elicited unclear. ERK2, a member of the MAPK family, is one repulsive responses to netrin (Hong et al., 1999; Keleman and of the few proteins known to be involved in DCC- Dickson, 2001). Due to the lack of catalytic motifs in its intracel- lular domain, DCC is thought to transmit its signal by binding to mediated signaling. Here, we report that ERK2 its downstream proteins. Identification of DCC intracellular directly interacts with DCC, and the ERK2-binding domain binding partners has helped in understanding netrin/ region was mapped to the conserved intracellular DCC downstream signaling events. -
Experimental Validation of the Regulated Expression of Large Numbers of Non-Coding Rnas from the Mouse Genome
Downloaded from genome.cshlp.org on September 30, 2021 - Published by Cold Spring Harbor Laboratory Press Article Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome Timothy Ravasi,1,4,5 Harukazu Suzuki,2,4 Ken C. Pang,1,3,4 Shintaro Katayama,2,4 Masaaki Furuno,2,4,6 Rie Okunishi,2 Shiro Fukuda,2 Kelin Ru,1 Martin C. Frith,1,2 M. Milena Gongora,1 Sean M. Grimmond,1 David A. Hume,1 Yoshihide Hayashizaki,2 and John S. Mattick1,7 1ARC Special Research Centre for Functional and Applied Genomics, Institute for Molecular Bioscience, University of Queensland, Brisbane QLD 4072, Australia; 2Laboratory for Genome Exploration Research Group, RIKEN Genomic Science Center, RIKEN Yokohama Institute, Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan; 3T Cell Laboratory, Ludwig Institute for Cancer Research, Austin & Repatriation Medical Centre, Heidelberg VIC 3084, Australia Recent large-scale analyses of mainly full-length cDNA libraries generated from a variety of mouse tissues indicated that almost half of all representative cloned sequences did not contain an apparent protein-coding sequence, and were putatively derived from non-protein-coding RNA (ncRNA) genes. However, many of these clones were singletons and the majority were unspliced, raising the possibility that they may be derived from genomic DNA or unprocessed pre-mRNA contamination during library construction, or alternatively represent nonspecific “transcriptional noise.” Here we show, using reverse transcriptase-dependent PCR, microarray, and Northern blot analyses, that many of these clones were derived from genuine transcripts of unknown function whose expression appears to be regulated. -
Lysosomal Function and Axon Guidance: Is There a Meaningful Liaison?
biomolecules Review Lysosomal Function and Axon Guidance: Is There a Meaningful Liaison? Rosa Manzoli 1,2,†, Lorenzo Badenetti 1,3,4,†, Michela Rubin 1 and Enrico Moro 1,* 1 Department of Molecular Medicine, University of Padova, 35121 Padova, Italy; [email protected] (R.M.); [email protected] (L.B.); [email protected] (M.R.) 2 Department of Biology, University of Padova, 35121 Padova, Italy 3 Department of Women’s and Children’s Health, University of Padova, 35121 Padova, Italy 4 Pediatric Research Institute “Città della Speranza”, 35127 Padova, Italy * Correspondence: [email protected]; Tel.: +39-04-98276341 † These authors contributed equally to this paper. Abstract: Axonal trajectories and neural circuit activities strongly rely on a complex system of molec- ular cues that finely orchestrate the patterning of neural commissures. Several of these axon guidance molecules undergo continuous recycling during brain development, according to incompletely un- derstood intracellular mechanisms, that in part rely on endocytic and autophagic cascades. Based on their pivotal role in both pathways, lysosomes are emerging as a key hub in the sophisticated regulation of axonal guidance cue delivery, localization, and function. In this review, we will attempt to collect some of the most relevant research on the tight connection between lysosomal function and axon guidance regulation, providing some proof of concepts that may be helpful to understanding the relation between lysosomal storage disorders and neurodegenerative diseases. Citation: Manzoli, R.; Badenetti, L.; Keywords: axon guidance; lysosomal storage disorders; neuronal circuit Rubin, M.; Moro, E. Lysosomal Function and Axon Guidance: Is There a Meaningful Liaison? Biomolecules 2021, 11, 191. -
Discovery of a Functional Protein Complex of Netrin-4, Laminin 1 Chain
Discovery of a functional protein complex of netrin-4, laminin ␥1 chain, and integrin ␣61 in mouse neural stem cells Fernanda I. Staquicinia, Emmanuel Dias-Netoa, Jianxue Lib, Evan Y. Snyderc,d,e, Richard L. Sidmanb,1, Renata Pasqualinia,1, and Wadih Arapa,1 aDavid H. Koch Center, The University of Texas M. D. Anderson Cancer Center, Houston, TX 77030; bHarvard Medical School and Department of Neurology, Beth Israel Deaconess Medical Center, Boston, MA 02215; cStem Cell and Regeneration Program, Center for Neuroscience and Aging Research, Burnham Institute for Medical Research, La Jolla, CA 92037; dDepartment of Pediatrics, University of California, School of Medicine, La Jolla, CA 92093; and eSan Diego Consortium for Regenerative Medicine, La Jolla, CA 92037 Contributed by Richard L. Sidman, December 29, 2008 (sent for review October 13, 2008) Molecular and cellular interactions coordinating the origin and fate timeric complex functions as an integrated supramolecular of neural stem cells (NSCs) in the adult brain are far from being switch that regulates NSC fate. understood. We present a protein complex that controls prolifer- ation and migration of adult NSCs destined for the mouse olfactory Results and Discussion bulb (OB). Combinatorial selection based on phage display tech- Isolation of Peptides Binding to NSCs and Receptor Identification. We nology revealed a previously unrecognized complex between the profiled (16–18) the surface of a representative prototypical soluble protein netrin-4 and laminin ␥1 subunit that in turn clone of murine NSCs (C17.2) that can self-renew, differentiate activates an ␣61 integrin-mediated signaling pathway in NSCs. into all neural lineages, and populate developing or degenerating Differentiation of NSCs is accompanied by a decrease in netrin-4 regions of the central nervous system (19, 20). -
Supplementary Table 1: Adhesion Genes Data Set
Supplementary Table 1: Adhesion genes data set PROBE Entrez Gene ID Celera Gene ID Gene_Symbol Gene_Name 160832 1 hCG201364.3 A1BG alpha-1-B glycoprotein 223658 1 hCG201364.3 A1BG alpha-1-B glycoprotein 212988 102 hCG40040.3 ADAM10 ADAM metallopeptidase domain 10 133411 4185 hCG28232.2 ADAM11 ADAM metallopeptidase domain 11 110695 8038 hCG40937.4 ADAM12 ADAM metallopeptidase domain 12 (meltrin alpha) 195222 8038 hCG40937.4 ADAM12 ADAM metallopeptidase domain 12 (meltrin alpha) 165344 8751 hCG20021.3 ADAM15 ADAM metallopeptidase domain 15 (metargidin) 189065 6868 null ADAM17 ADAM metallopeptidase domain 17 (tumor necrosis factor, alpha, converting enzyme) 108119 8728 hCG15398.4 ADAM19 ADAM metallopeptidase domain 19 (meltrin beta) 117763 8748 hCG20675.3 ADAM20 ADAM metallopeptidase domain 20 126448 8747 hCG1785634.2 ADAM21 ADAM metallopeptidase domain 21 208981 8747 hCG1785634.2|hCG2042897 ADAM21 ADAM metallopeptidase domain 21 180903 53616 hCG17212.4 ADAM22 ADAM metallopeptidase domain 22 177272 8745 hCG1811623.1 ADAM23 ADAM metallopeptidase domain 23 102384 10863 hCG1818505.1 ADAM28 ADAM metallopeptidase domain 28 119968 11086 hCG1786734.2 ADAM29 ADAM metallopeptidase domain 29 205542 11085 hCG1997196.1 ADAM30 ADAM metallopeptidase domain 30 148417 80332 hCG39255.4 ADAM33 ADAM metallopeptidase domain 33 140492 8756 hCG1789002.2 ADAM7 ADAM metallopeptidase domain 7 122603 101 hCG1816947.1 ADAM8 ADAM metallopeptidase domain 8 183965 8754 hCG1996391 ADAM9 ADAM metallopeptidase domain 9 (meltrin gamma) 129974 27299 hCG15447.3 ADAMDEC1 ADAM-like, -
Molecular Biology Meeting Review of Axon Guidance
CORE Metadata, citation and similar papers at core.ac.uk Provided by Elsevier - Publisher Connector Neuron, Vol. 17, 1039±1048, December, 1996, Copyright 1996 by Cell Press Molecular Biology Meeting Review of Axon Guidance M. Angela Nieto of a very exciting and intensive meeting that took place Instituto Cajal, CSIC on September 12±14, 1996, at the EMBL in Heidelberg. 28002 Madrid The workshop, entitled ªMolecular Biology of Axon Spain Guidance,º gathered a forum of 26 speakers and some 90 people in total, who enthusiastically presented and discussed the recent advances in the field. I will summa- More than a century ago, Cajal published one of his rize the meeting in this review, emphasizing some of the most significant contributions, the discovery of the new data presented. growth cone as the terminal structure of the developing The topics of the meeting were quite varied but many neuronal cell. This finding was a crucial step in the estab- of the speakers concentrated on axonal guidance in the lishment of the theory that neurons develop as individual two models used to describe the growth cone and the cells. chemoaffinity theory, namely the midline and the retino- tectal system; the starring molecules were members of ª.. This fibre [of the commissural neuron] ends...in an the collapsin/semaphorin family, the netrins, and the enlargement which may be rounded and subtle, but that Eph-related receptor family and their ligands. may also adopt a conical appearance. This latter we shall name the growth cone, that at times displays fine and short extensions...which appear to insinuate them- The Eph-Related Receptor Family selves between the surrounding elements, relentlessly and Their Ligands forging a path through the interstitial matrixº (Ramo ny Receptor tyrosine kinases (RTKs) have been subdivided Cajal, 1890a, Figure 1).