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Morphology and Phylogeny of Four Marine Scuticociliates (Protista, Ciliophora), with Descriptions of Two New Species: Pleuronema Elegans Spec
Acta Protozool. (2015) 54: 31–43 www.ejournals.eu/Acta-Protozoologica ACTA doi:10.4467/16890027AP.15.003.2190 PROTOZOOLOGICA Morphology and Phylogeny of Four Marine Scuticociliates (Protista, Ciliophora), with Descriptions of Two New Species: Pleuronema elegans spec. nov. and Uronema orientalis spec. nov. Xuming PAN1†, Jie HUANG2†, Xinpeng FAN3, Honggang MA1, Khaled A. S. AL-RASHEID4, Miao MIAO5 and Feng GAO1 1Laboratory of Protozoology, Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao 266003, China; 2Key Laboratory of Aquatic Biodiversity and Conservation of Chinese Academy of Science, Institute of Hydrobiology, Chinese Academy of Science, Wuhan 430072, China; 3School of Life Sciences, East China Normal University, Shanghai 200062, China; 4Zoology Department, King Saud University, Riyadh 11451, Saudi Arabia; 5College of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China †Contributed equally Abstract. The morphology and infraciliature of four marine scuticociliates, Pleuronema elegans spec. nov., P. setigerum Calkins, 1902, P. gro- lierei Wang et al., 2008 and Uronema orientalis spec. nov., collected from China seas, were investigated through live observation and protargol staining methods. Pleuronema elegans spec. nov. can be recognized by the combination of the following characters: size in vivo 90–115 × 45–60 µm, slender oval in outline with a distinctly pointed posterior end; about 10 prolonged caudal cilia; consistently two preoral kineties and 18 or 19 somatic kineties; membranelle 2a double-rowed with its posterior end straight; membranelle 3 three-rowed; one macronucleus; marine habitat. Uronema orientalis spec. nov. is distinguished by the following features: in vivo about 40–55 × 20–30 μm with a truncated apical plate; consis- tently twenty somatic kineties; membranelle 1 single-rowed and divided into two parts which comprise four and three basal bodies respectively; contractile vacuole pore positioned at the end of the second somatic kinety; marine habitat. -
Interactions Between the Parasite Philasterides Dicentrarchi and the Immune System of the Turbot Scophthalmus Maximus.A Transcriptomic Analysis
biology Article Interactions between the Parasite Philasterides dicentrarchi and the Immune System of the Turbot Scophthalmus maximus.A Transcriptomic Analysis Alejandra Valle 1 , José Manuel Leiro 2 , Patricia Pereiro 3 , Antonio Figueras 3 , Beatriz Novoa 3, Ron P. H. Dirks 4 and Jesús Lamas 1,* 1 Department of Fundamental Biology, Institute of Aquaculture, Campus Vida, University of Santiago de Compostela, 15782 Santiago de Compostela, Spain; [email protected] 2 Department of Microbiology and Parasitology, Laboratory of Parasitology, Institute of Research on Chemical and Biological Analysis, Campus Vida, University of Santiago de Compostela, 15782 Santiago de Compostela, Spain; [email protected] 3 Institute of Marine Research, Consejo Superior de Investigaciones Científicas-CSIC, 36208 Vigo, Spain; [email protected] (P.P.); antoniofi[email protected] (A.F.); [email protected] (B.N.) 4 Future Genomics Technologies, Leiden BioScience Park, 2333 BE Leiden, The Netherlands; [email protected] * Correspondence: [email protected]; Tel.: +34-88-181-6951; Fax: +34-88-159-6904 Received: 4 September 2020; Accepted: 14 October 2020; Published: 15 October 2020 Simple Summary: Philasterides dicentrarchi is a free-living ciliate that causes high mortality in marine cultured fish, particularly flatfish, and in fish kept in aquaria. At present, there is still no clear picture of what makes this ciliate a fish pathogen and what makes fish resistant to this ciliate. In the present study, we used transcriptomic techniques to evaluate the interactions between P. dicentrarchi and turbot leucocytes during the early stages of infection. The findings enabled us to identify some parasite genes/proteins that may be involved in virulence and host resistance, some of which may be good candidates for inclusion in fish vaccines. -
Disease of Aquatic Organisms 86:163
Vol. 86: 163–167, 2009 DISEASES OF AQUATIC ORGANISMS Published September 23 doi: 10.3354/dao02113 Dis Aquat Org NOTE DNA identification of ciliates associated with disease outbreaks in a New Zealand marine fish hatchery 1, 1 1 1 2 P. J. Smith *, S. M. McVeagh , D. Hulston , S. A. Anderson , Y. Gublin 1National Institute of Water and Atmospheric Research (NIWA), Private Bag 14901, Wellington, New Zealand 2NIWA, Station Road, Ruakaka, Northland 0166, New Zealand ABSTRACT: Ciliates associated with fish mortalities in a New Zealand hatchery were identified by DNA sequencing of the small subunit ribosomal RNA gene (SSU rRNA). Tissue samples were taken from lesions and gill tissues on freshly dead juvenile groper, brain tissue from adult kingfish, and from ciliate cultures and rotifers derived from fish mortality events between January 2007 and March 2009. Different mortality events were characterized by either of 2 ciliate species, Uronema marinum and Miamiensis avidus. A third ciliate, Mesanophrys carcini, was identified in rotifers used as food for fish larvae. Sequencing part of the SSU rRNA provided a rapid tool for the identification and mon- itoring of scuticociliates in the hatchery and allowed the first identification of these species in farmed fish in New Zealand. KEY WORDS: Small subunit ribosomal RNA gene · Scuticociliatosis · Uronema marinum · Miamiensis avidus · Mesanophrys carcini · Groper · Polyprion oxygeneios · Kingfish · Seriola lalandi Resale or republication not permitted without written consent of the publisher INTRODUCTION of ciliate pathogens in fin-fish farms (Kim et al. 2004a,b, Jung et al. 2007) and in crustacea (Ragan et The scuticociliates are major pathogens in marine al. -
Protozoologica Acta Doi:10.4467/16890027AP.15.027.3541 Protozoologica
Acta Protozool. (2015) 54: 325–330 www.ejournals.eu/Acta-Protozoologica ActA doi:10.4467/16890027AP.15.027.3541 Protozoologica Short Communication High-Density Cultivation of the Marine Ciliate Uronema marinum (Ciliophora, Oligohymenophorea) in Axenic Medium Weibo ZHENG1, Feng GAO1, Alan WARREN2 1 Laboratory of Protozoology, Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao 266003, China; 2 Department of Life Sciences, Natural History Museum, London SW7 5BD, UK Abstract. Uronema marinum is a cosmopolitan marine ciliate. It is a facultative parasite and the main causative agent of outbreaks of scuticociliatosis in aquaculture fish. This study reports a method for the axenic cultivation of U. marinum in high densities in an artificial medium comprising proteose peptone, glucose and yeast extract powder as its basic components. The absence of bacteria in the cultures was confirmed by fluorescence microscopy of DAPI-stained samples and the failure to recover bacterial SSU-rDNA using standard PCR methods. Using this axenic medium, a maximum cell density of 420,000 ciliate cells/ml was achieved, which is significantly higher than in cultures using living bacteria as food or in other axenic media reported previously. This method for high-density axenic cultivation of U. marinum should facilitate future research on this economically important facultative fish parasite. Key words: Axenic cultivation, ciliates, fish parasite, scuticociliatosis, Uronema marinum. INTRODUCTION fully cultivated axenically and was grown in a medium containing dead yeast cells, liver extract and kidney tis- sue (Glaser et al. 1933). Pure cultures of strains belong- Axenic cultures of ciliates have proved to be ex- ing to the “Colpidium-Glaucoma-Leucophrys-Tetrahy- tremely valuable in a wide range of research fields mena group” were subsequently established (Corliss including growth, nutrition, respiration, genetics, fac- 1952). -
Miamiensis Avidus
Parasitology Research https://doi.org/10.1007/s00436-018-6010-8 ORIGINAL PAPER Development of a safe antiparasitic against scuticociliates (Miamiensis avidus) in olive flounders: new approach to reduce the toxicity of mebendazole by material remediation technology using full-overlapped gravitational field energy Jung-Soo Seo1 & Na-Young Kim2 & Eun-Ji Jeon2 & Nam-Sil Lee2 & En-Hye Lee3 & Myoung-Sug Kim2 & Hak-Je Kim4 & Sung-Hee Jung2 Received: 5 March 2018 /Accepted: 6 July 2018 # The Author(s) 2018 Abstract The olive flounder (Paralychthys olivaceus) is a representative farmed fish species in South Korea, which is cultured in land-based tanks and accounts for approximately 50% of total fish farming production. However, farmed olive flounder are susceptible to infection with parasitic scuticociliates, which cause scuticociliatosis, a disease resulting in severe economic losses. Thus, there has been a longstanding imperative to develop a highly stable and effective antiparasitic drug that can be rapidly administered, both orally and by bath, upon infection with scuticociliates. Although the efficacy of commercially available mebendazole (MBZ) has previously been established, this compound cannot be used for olive flounder due to hematological, biochemical, and histopathological side effects. Thus, we produced material remediated mebendazole (MR MBZ), in which elements comprising the molecule wereARTICLE remediated by using full-overlapped grav- itational field energy, thereby reducing the toxicity of the parent material. The antiparasitic effect of MR MBZ against scuticociliates in olive flounder was either similar to or higher than that of MBZ under the same conditions. Oral (100 and500mg/kgB.W.)andbath(100and500mg/L) administrations of MBZ significantly (p < 0.05) increased the values of hematological and biochemical parameters, whereas these values showed no increase in the MR MBZ administration group. -
Biodiversity of Marine Scuticociliates (Protozoa, Ciliophora) from China
Available online at www.sciencedirect.com ScienceDirect European Journal of Protistology 51 (2015) 142–157 Biodiversity of marine scuticociliates (Protozoa, Ciliophora) from China: Description of seven morphotypes including a new species, Philaster sinensis spec. nov. a,b a,∗ a b Xuming Pan , Zhenzhen Yi , Jiqiu Li , Honggang Ma , c c Saleh A. Al-Farraj , Khaled A.S. Al-Rasheid a Key Laboratory of Ecology and Environmental Science in Guangdong Higher Education, South China Normal University, Guangzhou 510631, China b Laboratory of Protozoology, Institute of Evolution & Marine Biodiversity, Ocean University of China, Qingdao 266003, China c Zoology Department, King Saud University, Riyadh 11451, Saudi Arabia Received 21 August 2014; received in revised form 17 February 2015; accepted 18 February 2015 Available online 25 February 2015 Abstract Seven marine scuticociliates, Philaster sinensis spec. nov., Pseudocohnilembus hargisi Evans and Thompson, 1964. J. Pro- tozool. 11, 344, Parauronema virginianum Thompson, 1967. J. Protozool. 14, 731, Uronemella filificum (Kahl, 1931. Tierwelt. Dtl. 21, 181) Song and Wilbert, 2002. Zool. Anz. 241, 317, Cohnilembus verminus Kahl, 1931, Parauronema longum Song, 1995. J. Ocean Univ. China. 25, 461 and Glauconema trihymene Thompson, 1966. J. Protozool. 13, 393, collected from Chinese coastal waters, were investigated using live observations, silver impregnation methods, and, in the case of the new species, SSU rDNA sequencing. Philaster sinensis spec. nov. can be recognized by the combination of the following characters: body cylindrical, approximately 130–150 × 35–55 m in vivo; apical end slightly to distinctly pointed, posterior generally rounded; 19–22 somatic kineties; M1 triangular, consisting of 13 or 14 transverse rows of kinetosomes; M2 comprising 10–12 longitudi- nal rows; CVP positioned at end of SK1; marine habitat. -
Systematic Studies on Ciliates (Alveolata, Ciliophora) in China: Progress
Available online at www.sciencedirect.com ScienceDirect European Journal of Protistology 61 (2017) 409–423 Review Systematic studies on ciliates (Alveolata, Ciliophora) in China: Progress and achievements based on molecular information a,1 a,b,1 a,c,1 a,d,1 a,e,1 Feng Gao , Jie Huang , Yan Zhao , Lifang Li , Weiwei Liu , a,f,1 a,g,1 a,1 a,h,∗ Miao Miao , Qianqian Zhang , Jiamei Li , Zhenzhen Yi , i j a,k Hamed A. El-Serehy , Alan Warren , Weibo Song a Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao 266003, China b Key Laboratory of Aquatic Biodiversity and Conservation, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China c Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China d Marine College, Shandong University, Weihai 264209, China e Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Science, Guangzhou 510301, China f College of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China g Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, China h Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, South China Normal University, Guangzhou 510631, China i Department of Zoology, King Saud University, Riyadh 11451, Saudi Arabia j Department of Life Sciences, Natural History Museum, London SW7 5BD, UK k Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266003, China Available online 6 May 2017 Abstract Due to complex morphological and convergent morphogenetic characters, the systematics of ciliates has long been ambiguous. -
Miamiensis Avidus (Ciliophora: Scuticociliatida) Causes Systemic
DISEASES OF AQUATIC ORGANISMS Vol. 73: 227–234, 2007 Published January 18 Dis Aquat Org Miamiensis avidus (Ciliophora: Scuticociliatida) causes systemic infection of olive flounder Paralichthys olivaceus and is a senior synonym of Philasterides dicentrarchi Sung-Ju Jung*, Shin-Ichi Kitamura, Jun-Young Song, Myung-Joo Oh Department of Aqualife Medicine, Chonnam National University, Chonnam 550-749, Korea ABSTRACT: The scuticociliate Miamiensis avidus was isolated from olive flounder Paralichthys oli- vaceus showing typical symptoms of ulceration and hemorrhages in skeletal muscle and fins. In an infection experiment, olive flounder (mean length: 14.9 cm; mean weight: 26.8 g) were immersion challenged with 2.0 × 103, 2.0 × 104 and 2.0 × 105 ciliates ml–1 of the cloned YS1 strain of M. avidus. Cumulative mortalities were 85% in the 2.0 × 103 cells ml–1 treatment group and 100% in the other 2 infection groups. Many ciliates, containing red blood cells in the cytoplasm, were observed in the gills, skeletal muscle, skin, fins and brains of infected fish, which showed accompanying hemorrhagic and necrotic lesions. Ciliates were also observed in the lamina propria of the digestive tract, pharynx and cornea. The fixed ciliates were 31.5 ± 3.87 µm in length and 18.5 ± 3.04 µm in width, and were ovoid and slightly elongated in shape, with a pointed anterior and a rounded posterior, presenting a caudal cilium. Other morphological characteristics were as follows: 13 to 14 somatic kineties, oral cil- iature comprising membranelles M1, M2, M3, and paroral membranes PM1 and PM2, contractile vacuole at the posterior end of kinety 2, shortened last somatic kinety and a buccal field to body length ratio of 0.47 ± 0.03. -
Metagenomic Next-Generation Sequencing Reveals Miamiensis Avidus (Ciliophora: Scuticociliatida)
bioRxiv preprint doi: https://doi.org/10.1101/301556; this version posted April 15, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Retallack et al., mNGS reveals M. avidus in epizootic of leopard sharks 1 Metagenomic next-generation sequencing reveals Miamiensis avidus (Ciliophora: Scuticociliatida) in the 2017 epizootic of leopard sharks (Triakis semifasciata) in San Francisco Bay, California Hanna Retallack1, Mark S. Okihiro*2, Elliot Britton3, Sean Van Sommeran4, Joseph L. DeRisi1,5 1 Department of Biochemistry and Biophysics, University of California San Francisco, 1700 4th St., San Francisco, CA 94158 2 Fisheries Branch, Wildlife and Fisheries Division, California Department of Fish and Wildlife, 1880 Timber Trail, Vista, CA 92081 3 San Francisco University High School, 3065 Jackson St., San Francisco CA 94115 4 Pelagic Shark Research Foundation, 750 Bay Ave. #2108, Capitola CA 95010 5 Chan-Zuckerberg Biohub, 499 Illinois St., San Francisco, CA 94158 *Corresponding author: Mark S. Okihiro California Department of Fish and Wildlife Wildlife and Fisheries Division, Fisheries Branch 1880 Timber Trail Vista, California 92081 Phone: (760) 310-4212 Email: [email protected] Word count: 4042 bioRxiv preprint doi: https://doi.org/10.1101/301556; this version posted April 15, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Further Analyses on the Phylogeny of the Subclass Scuticociliatia (Protozoa, Ciliophora) Based on Both Nuclear and Mitochondrial
Molecular Phylogenetics and Evolution 139 (2019) 106565 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Further analyses on the phylogeny of the subclass Scuticociliatia (Protozoa, Ciliophora) based on both nuclear and mitochondrial data T ⁎ Tengteng Zhanga,b,1, Xinpeng Fanc,1, Feng Gaoa,b, , Saleh A. Al-Farrajd, Hamed A. El-Serehyd, ⁎ Weibo Songa,b,e, a Institute of Evolution & Marine Biodiversity, Ocean University of China, Qingdao 266003, China b Key Laboratory of Mariculture (Ocean University of China), Ministry of Education, Qingdao 266003, China c School of Life Sciences, East China Normal University, Shanghai 200241 China d Zoology Department, College of Science, King Saud University, Riyadh 11451, Saudi Arabia e Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266003, China ARTICLE INFO ABSTRACT Keywords: So far, the phylogenetic studies on ciliated protists have mainly based on single locus, the nuclear ribosomal Scuticociliatia DNA (rDNA). In order to avoid the limitations of single gene/genome trees and to add more data to systematic COI analyses, information from mitochondrial DNA sequence has been increasingly used in different lineages of mtSSU-rDNA ciliates. The systematic relationships in the subclass Scuticociliatia are extremely confused and largely un- nSSU-rDNA resolved based on nuclear genes. In the present study, we have characterized 72 new sequences, including 40 Phylogeny mitochondrial cytochrome oxidase c subunit I (COI) sequences, 29 mitochondrial small subunit ribosomal DNA Secondary structure (mtSSU-rDNA) sequences and three nuclear small subunit ribosomal DNA (nSSU-rDNA) sequences from 47 isolates of 44 morphospecies. -
Phylogenetic Relationship
ABSTRACT Title of Document: PHYLOGENETIC RELATIONSHIP AMONG POLYMORPHIC OLIGOHYMENOPHOREAN CILIATES, WITH GENE EXPRESSION IN LIFE-HISTORY STAGES OF MIAMIENSIS AVIDUS (CILIOPHORA, OLIGOHYMENOPHOREA) Glenn Frederick Gebler Doctor of Philosophy, 2007 Directed By: Dr. Eugene B. Small Department of Biology The Class Oligohymenophorea is a monophyletic group possessing polymorphic taxa. Thus far, relationships within subclasses of oligohymenophorean ciliates and between polymorphic taxa within families are not well resolved. Here, nuclear small subunit rRNA (SSU rRNA) gene sequences from 63 representative taxa, including several polymorphic species, were used to construct phylogenies and test monophyly of the subclass Scuticociliatia and of the polymorphic taxa within the Oligohymenophorea. In addition, suppression subtraction hybridization (SSH) was used to test the hypothesis that genes are differentially expressed during microstome- to-macrostome and tomite-to-microstome transformation in the polymorphic scuticociliate Miamiensis avidus . Phylogenetic analyses confirmed monophyly of the subclasses Peritrichia and Hymenostomatia. The monophyletic scuticociliates encompassed most, but not all, taxa included in this study. The conditional acceptance of the hypothesis supporting monophyly of the Scuticociliatia was due to the ambiguous placement of three taxa, the apostome Anoplophrya marylandensis , the scuticociliate Dexitrichides pangi , and the peniculine Urocentrum turbo . The polymorphic trait most likely arose on at least four, and perhaps on as many as six, separate occasions within the oligohymenophorean ciliates. Several genes previously implicated in morphogenetic processes in eukaryotes were upregulated during microstome-to-macrostome transformation in M. avidus . Those genes were, elongation factor-1 alpha ( Ef-1α), Constans, Constans-like TOC1 (CCT) transcription factor, a disulfide isomerase, heat shock protein 70, step II splicing factor ( Slu7 ), U1 zinc finger protein, and WD40-16 repeat protein. -
Zooplankton of the Open Baltic Sea: Extended Atlas
LEIBNIZ-INSTITUT FÜR OSTSEEFORSCHUNG WARNEMÜNDE LEIBNIZ INSTITUTE FOR BALTIC SEA RESEARCH Meereswissenschaftliche Marine Science Berichte Reports No. 76 2009 Zooplankton of the Open Baltic Sea: Extended Atlas by Irena Telesh, Lutz Postel, Reinhard Heerkloss, Ekaterina Mironova, Sergey Skarlato "Meereswissenschaftliche Berichte" veröffentlichen Monographien und Ergebnis- berichte von Mitarbeitern des Leibniz-Instituts für Ostseeforschung Warnemünde und ihren Kooperationspartnern. Die Hefte erscheinen in unregelmäßiger Folge und in fortlaufender Nummerierung. Für den Inhalt sind allein die Autoren verantwortlich. "Marine Science Reports" publishes monographs and data reports written by scien- tists of the Leibniz-Institute for Baltic Sea Research Warnemünde and their co- workers. Volumes are published at irregular intervals and numbered consecutively. The content is entirely in the responsibility of the authors. Schriftleitung: Dr. Lutz Postel ([email protected]) Bezugsadresse / address for orders: Leibniz–Institut für Ostseeforschung Warnemünde Bibliothek Seestr. 15 D-18119 Warnemünde Germany ([email protected]) Eine elektronische Version ist verfügbar unter / An electronic version is available on: http://www.io-warnemuende.de/research/mebe.html This volume is listed as The Baltic Marine Biologists Publication No.21 and should be cited: Telesh, I., Postel, L., Heerkloss, R., Mironova, E., Skarlato, S., 2009. Zooplankton of the Open Baltic Sea: Extended Atlas. BMB Publication No. 21 – Meereswiss. Ber., Warnemünde, 76, 1 - 290. ISSN 0939 -396X Meereswissenschaftliche Berichte MARINE SCIENCE REPORTS No. 76 Zooplankton of the Open Baltic Sea: Extended Atlas By Irena Telesh1, Lutz Postel2, Reinhard Heerkloss3 Ekaterina Mironova4, Sergey Skarlato4 1 Zoological Institute, Russian Academy of Sciences, Universitetskaya Emb. 1, 199034 St. Petersburg, Russia 2 Leibniz – Institute for Baltic Sea Research (IOW), Seestr.