Published OnlineFirst November 6, 2018; DOI: 10.1158/0008-5472.CAN-18-1938
Cancer Molecular Cell Biology Research
Inhibition of Thioredoxin/Thioredoxin Reductase Induces Synthetic Lethality in Lung Cancers with Compromised Glutathione Homeostasis Xiang Yan1,2, Xiaoshan Zhang1, Li Wang1, Ran Zhang1, Xingxiang Pu1, Shuhong Wu1, Lei Li3, Pan Tong4, Jing Wang4, Qing H. Meng5, Vanessa B. Jensen6, Luc Girard7, John D. Minna7, Jack A. Roth1, Stephen G. Swisher1, John V.Heymach8, and Bingliang Fang1
Abstract
Glutathione (GSH)/GSH reductase (GSR) and thioredoxin/ cancer (NSCLC) cell lines revealed that auranofin sensitivity thioredoxin reductase (TXNRD) are two major compensating correlated with the expression levels of the GSR, glutamate- thiol-dependent antioxidant pathways that maintain protein cysteine ligase catalytic subunit (GCLC), and NAD(P)H qui- dithiol/disulfide balance. We hypothesized that functional none dehydrogenase 1 (NQO1) genes. In NSCLC patient- deficiency in one of these systems would render cells depen- derived xenografts with reduced expression of GSR and/or dent on compensation by the other system for survival, pro- GCLC, growth was significantly suppressed by treatment with viding a mechanism-based synthetic lethality approach for auranofin. Together, these results provide a proof of concept treatment of cancers. The human GSR gene is located on that cancers with compromised expression of enzymes chromosome 8p12, a region frequently lost in human cancers. required for GSH homeostasis or with chromosome 8p dele- GSR deletion was detected in about 6% of lung adenocarci- tions that include the GSR gene may be targeted by a synthetic nomas in The Cancer Genome Atlas database. To test whether lethality strategy with inhibitors of TXNRD. loss of GSR sensitizes cancer cells to TXNRD inhibition, we knocked out or knocked down the GSR gene in human lung Significance:Thesefindings demonstrate that lung cancers cancer cells and evaluated their response to the TXNRD inhib- with compromised expression of enzymes required for glutathi- itor auranofin. GSR deficiency sensitized lung cancer cells to one homeostasis, including reduced GSR gene expression, may this agent. Analysis of a panel of 129 non–small cell lung be targeted by thioredoxin/thioredoxin reductase inhibitors.
Introduction maintain cellular thiol redox homeostasis and protein dithiol/ disulfide balance (1, 2). Both GSH and TXN catalyze the reduction Glutathione (GSH)/GSH reductase (GSR) and thioredoxin of disulfide bonds in proteins to dithiols, which is critical for (TXN)/thioredoxin reductase (TXNRD) are two parallel, compen- maintaining protein functions (Fig. 1A). Oxidized GSH (GSSG) sating thiol-dependent antioxidant pathways that regulate and and TXN generated during this catalytic process are converted to their reduced states by GSR and TXNRD, respectively, both using NADPH generated in the pentose phosphate cycle as the hydrogen 1Department of Thoracic and Cardiovascular Surgery, The University of Texas donor. Functional deficiency in one of these systems will render 2 MD Anderson Cancer Center, Houston, Texas. Department of Medical Oncol- cells dependent on compensation by the other system for survival. 3 ogy, Chinese PLA General Hospital, Beijing, China. Department of Experimental In GSR-deficient yeasts (3) and Drosophila (4), the TXN/TXNRD Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas. 4Department of Bioinformatics and Computational Biology, pathway is required for the reduction of GSSG to GSH. Similarly, The University of Texas MD Anderson Cancer Center, Houston, Texas. 5Depart- GSH acts as a backup for human TXNRD1 to reduce TXN, thereby ment of Laboratory Medicine, The University of Texas MD Anderson Cancer preventing cell death induced by gold compound–mediated Center, Houston, Texas. 6Department of Veterinary Medicine and Surgery, The TXNRD1 inhibition (5). Combined inhibition of the GSH and 7 University of Texas MD Anderson Cancer Center, Houston, Texas. Hamon TXN pathways has led to synergistic cancer cell death (6, 7). Center for Therapeutic Oncology, The Harold C. Simmons Comprehensive Because synthetic lethality interactions occur significantly more Cancer Center, University of Texas Southwestern Medical Center, Dallas, Texas. 8Department of Thoracic/Head and Neck Medical Oncology, The University of frequently among genes involved in similar biological processes, Texas MD Anderson Cancer Center, Houston, Texas. such as those in parallel or compensating pathways (8), we hypothesized that loss and/or reduced expression of enzymes Note: Supplementary data for this article are available at Cancer Research Online (http://cancerres.aacrjournals.org/). required for GSH homeostasis, including GSR and glutamate- cysteine ligase (the first rate-limiting enzyme of GSH synthesis), in X. Yan and X. Zhang contributed equally to this article. a subgroup of cancers predisposes them to vulnerability to treat- Corresponding Author: Bingliang Fang, The University of Texas MD Anderson ment with TXNRD inhibitors, providing a mechanism-based Cancer Center, 1515 Holcombe Blvd., Houston, TX 77030. Phone: 713-563-9147; synthetic lethality therapy for these cancers. Fax: 713-794-4901; E-mail: [email protected] The human GSR gene is located on chromosome 8p12, a region doi: 10.1158/0008-5472.CAN-18-1938 frequently lost in lung cancers (9, 10) and other types of cancers, 2018 American Association for Cancer Research. including breast (11), head and neck (12), prostate (13), bladder
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Figure 1. GSR gene deletions in human cancers from TCGA database. A, GSH/GSR and TXN/ TXNRD pathways in regulating protein dithiol/disulfide balance. Both GSH and TXN catalyze the reduction of disulfide bonds in proteins to dithiols, which is critical for maintaining protein functions. B, Alterations in GSR and other selected genes in lung adenocarcinomas. The mutation frequencies are shown on the left side of the graph. Deletions of the GRS gene overlap mostly with the deletion of TUSC3, a gene located in chromosome 8p22, indicating co- occurrence of GSR deletion and chromosome 8p loss. C, Frequencies of GSR gene deletions in different types of cancers. The data were obtained by using the cBioPortal for Cancer Genomics.
(14), and gastric/colorectal (10) cancers and lymphoma (15). PCR Detection Kit (Sigma-Aldrich) and authenticated per rou- Accumulating evidence has shown that loss of chromosome 8p tine at our institution's Characterized Cell Line Core using a increases tumor invasiveness and metastasis potential (16–18) short tandem repeat DNA fingerprint assay with a PowerPlex 16 and confers resistance to chemotherapy and poor survival HS kit (Promega). in patients with cancer (13, 18). Targeted deletion of chromosome 8p yielded altered lipid metabolism and increased autophagy, Gene knockout and knockdown in lung cancer cells which trigger invasiveness and confer tumor growth under stress A549–GSR-knockout cells were generated by using the CRISPR/ conditions (18). Unfortunately, therapeutic strategies for cancers Cas9 genome editing system. Briefly, GSR-specific guide RNA with chromosome 8p loss have yet to be developed. Loss of (gRNA) expression vectors were generated as described (20). the GSR gene may offer a unique opportunity for treatment of LentiCas9-Blast (plasmid 52962) and gRNA cloning vector lenti- cancer in a subgroup of patients whose cancer has chromosome Guide-Puro (plasmid 52963) were obtained from Addgene. The 8p aberrations. CRISPR guide sequences targeting GSR were GATCATGCAT- To explore the concept of targeting cancers in which expression GAATTCAGAG (gRNA1) and GTGAGGGTAAATTCAATTGG of enzymes required for GSH homeostasis is reduced or lost, we (gRNA2). A549 cells were cotransfected with lentiCas9-Blast and searched The Cancer Genome Atlas (TCGA) database for genetic gRNA expression vectors. The transfected cells were selected using alterations and found that deep GSR deletion was detected in 6% puromycin (2 mg/mL) for 48 hours. Isolated single colonies were of lung adenocarcinomas, 3.5% of squamous cell lung cancers, analyzed by Western blot. The colonies without GSR expression and 4% to 9% of prostate, breast, liver, ovarian, and colon cancers, were subjected to detection of genomic mutations by DNA suggesting that loss of the GSR gene occurs in a subset of human sequencing. cancers. We then tested whether loss of GSR in cancer cells will For siRNA-mediated gene knockdown, scramble control siRNA result in their vulnerability to auranofin, a TXNRD inhibitor (19). or siRNA targeting the GSR or the glutamate-cysteine ligase Our results show that reduced expression of enzymes required for catalytic subunit (GCLC) gene (all, Sigma-Aldrich) was trans- GSH homeostasis sensitized cancer cells to TXNRD inhibitor fected into cells with oligofectamine (Sigma-Aldrich) according auranofin. to the manufacturer's instructions. Plasmids for lentiviral vectors expressing cDNA or short-hairpin RNA (shRNA) used in this study were obtained from Open Biosystems through our institution's Materials and Methods shRNA and ORFeome Core facility. Lentiviral vectors were pack- Cell lines and cell culture aged in 293 cells after cotransfection with lentiviral packaging Human non–smallcelllungcancer(NSCLC)celllines, plasmids by using Fugene 6 as directed by the manufacturer including A549, H2023, H1993, and DFC1024, were obtained (Promega). The medium from the transfected 293 cells was from Dr. John Minna's laboratory (University of Texas South- filtered through a sterile 0.22-mm filter and used to infect target western Medical Center) and propagated in monolayer culture cells in the presence of 8 mg/mL polybrene. After selection with in DMEM supplemented with 10% FBS, 100 units/mL penicil- puromycin (1–2 mg/mL) or blasticidin (2–10 mg/mL), the cells lin, and 100 mg/mL streptomycin. All cells were maintained in a were pooled together for subsequent studies. The proportion of humidified atmosphere containing 5% CO2 at 37 C. Cell lines stably transfected cells (expressing GFP or RFP in the lentiviral were tested for mycoplasma with the LookOut Mycoplasma backbone) was usually >85% after selection.
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Targeting Cancers with Glutathione Reductase Deficiency
Cell viability assay overnight. After washing with PBS containing 0.05% Tween 2 The cell viability was determined using the sulforhodamine B (PBST), the membrane was incubated with IRDye infrared sec- assay as previously described (21) or using a CellTiter-Glo assay ondary antibody (Li-Cor) for 1 hour at room temperature. The kit (Promega) according to the manufacturer's instructions. Cell membrane was washed with PBST again, and protein expression viability following siRNA transfection was assayed as follows: cells was detected with the Odyssey Infrared Imaging System. were seeded in 96-well plates at 2,000 cells/per well for 24 hours. siRNA transfection was performed with 50 mL/well siRNA trans- Animal experiments fection mix in OptiMEM containing 0.2 mL of oligofectamine and Animals were maintained and experiments carried out in 200 nmol/L of siRNA; after 4-hour incubation at 37 C, another 50 accordance with the Guidelines for the Care and Use of Laboratory mL of regular culture medium containing 20% FBS was added to Animals (National Institutes of Health Publication 85-23) and each well. Auranofin was added 12 hours after siRNA transfection, the institutional guidelines of MD Anderson Cancer Center. and cell viability was assayed 72 hours later. The percentage of Patient-derived xenografts (PDX) were established from clinical viable cells was determined relative to the viability of the controls, surgically resected specimens or from pleural fluid as we previ- which was set at 100%. Each experiment was performed in ously reported (22), except that NOD-SCID mice with null triplicate and repeated 3 times. Number of apoptotic cells mutations of the gene encoding the IL2 receptor g (NSG) obtained (sub-G ) were measured using fluorescence-activated cell sorting 1 from The Jackson Laboratory were used instead of regular NOD- after Annexin V/propidium iodide staining. SCID for generation and passaging of PDXs. This study is approved by Institutional Animal Care and Use Committee and Western blot analysis Institutional Review Board at The University of Texas MD Ander- Antibodies for detecting human GSR, GCLC, glutamate-cyste- son Cancer Center. All clinical samples were collected with ine ligase modifier subunit (GCLM), TNXRD1, NAD(P)H qui- informed consent from the patients. Each PDX was subcutane- none dehydrogenase 1 (NQO1), and beta-actin were obtained ously inoculated into the dorsal flank of nude mice. When the from Santa Cruz Biotechnology or Abcam. Cells were harvested tumors had grown to 3 to 5 mm in diameter, the mice were after stable selection or at 48 hours after siRNA transfection. In assigned randomly into two groups (n ¼ 5/group) and treated brief, cells were washed in PBS solution, collected, and then with intraperitoneal administration of auranofin (10 mg/kg) in a subjected to lysis in RIPA buffer containing proteinase inhibitor solvent comprising 2% dimethylsulfoxide, 10% ethanol, and 5% cocktail and phosphatase inhibitor cocktail (Roche). The lysates polyethylene glycol 400 or the solvent without auranofinas were subjected to centrifugation at 10,000 g at 4 C for 10 controls. Treatment was administered daily for the first week, minutes and the supernatants removed. The total protein (30 mg) then twice a week for the duration of the experiment. Tumor was fractioned by 10% SDS-PAGE and electrophoretically trans- growth was monitored every 2 to 3 days and was normalized to ferred to Immobilon-FL PVDF membranes. The membrane was tumor volume at the beginning of treatment, which was set to 1. blocked with blocking buffer (Li-Cor) at room temperature for Subcutaneous tumors were measured with calipers, and tumor 1 hour, and then incubated with goat anti-human P53 IgG volume was calculated according to the formula V ¼ ab2/2, where (1:1,000) for 2 hours or with the primary antibody at 4 C a is the largest diameter and b is the smallest. The experiment was
Figure 2. Effect of GSR knockout on auranofin activity in lung cancer cells. A, Schema of CRISPR/Cas9-mediated knockout of the GSR gene. B, Western blot verification of GSR- knockout clones 1–5. Wt, controls. C, Dose responses of A549 and A549/GSR / cells to auranofin treatment. D–E, Apoptosis in response to treatment with auranofin in A549 and A549/GSR / cells. , P < 0.05 between two cell lines. F, PARP cleavage detected by Western blot analysis. b-Actin was used as loading control.
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ended, and the mice were euthanized when the largest tumors which encode the two protein subunits of glutamate-cysteine reached 15 mm in diameter. This in vivo experiment was per- ligase, were detected occasionally in lung adenocarcinoma or formed 3 times. squamous cell cancer (about 1%). Deletion of GCLM was relatively more frequent (about 2%–3%) in prostate and pan- Statistical analysis creatic cancers. This result indicates that there is a subset of The half-maximal effective dose (IC50) values were calculated human cancers that are likely compromised in GSH homeo- with the best-fit dose-response model selected by the residual stasis. Deletion of the GSR gene in a lung adenocarcinoma did standard error using the drexplorer package (23). The mRNA not overlap significantly with EGFR mutation or amplification levels determined by microarray assay were available for 76 of but did overlap TP53 and KRAS gene mutations, suggesting that 129 NSCLC cell lines tested for auranofin sensitivity. Association available targeted agents for cancer are not effective in cancers between gene expression and IC50 value was assessed using the with GSR, GCLC,orGCLM mutation. Spearman rank correlation. All statistical analyses were performed using the R software. P values were obtained using computed t Loss of GSR sensitizes cancer cells to TXNRD inhibitor statistics. The significance of the in vivo animal study data was auranofin determined by using the Mann–Whitney U test for two treatment To test whether loss of enzymes required for GSH homeostasis groups (two tailed). A P < 0.05 was considered statistically sensitizes cancer cells to TXNRD inhibition, we knocked out significant. the GSR gene in auranofin-resistant A549 lung cancer cells using CRISPR/Cas9 technology with two GSR-specific gRNAs (Fig. 2A). Results We identified five A549 clones with loss of GSR expression by Deep deletion of GSH homeostasis genes in human cancers Western blot analysis and verified genomic deletions in both To test the concept of targeting cancers with compromised alleles of the GSR gene using PCR-mediated genomic sequencing GSH homeostasis, we searched the TCGA database for altera- of the target sequence in one of the clones (Fig. 2B). A dose- tions of the GSR, GCLC,andGCLM genes using the cBioPortal dependent cell viability assay on two of the five clones demon- website (http://cBioPortal.org). We found that deep GSR dele- strated that knockout of the GSR gene led to a dramatic increase in tion was detected in 6% of lung adenocarcinomas, 3.5% of the sensitivity of A549 cells to auranofin (Fig. 2C). According to squamous cell lung cancers, and 4% to 9% of prostate, breast, Annexin V/propidium iodide staining, the rate of auranofin- liver, ovarian, and colon cancers (Fig. 1B and C). In both lung induced apoptosis was markedly higher in A549/GSR / cells adenocarcinoma and squamous cell cancer, most deletions of (16.4%) than in A549 cells wild-type for GSR (3.8%; Fig. 2D–F). A GSR are concurrent with deletions of TUSC3, a gene located in similar dose-dependent cytotoxic effect was observed for another chromosome 8p22, indicating coexistence of GSR deletion and TXNRD inhibitor aurothioglucose (5) in A549/ GSR / cells but chromosome 8p loss. Deletions of the GCLC and GCLM genes, not in the parental A549 cells (Supplementary Fig. S1).
Figure 3. Auranofin sensitivity in lung cancer cells after knockdown of GSR and/or GCLC genes with shRNA (A–D) or siRNA (E–H). Western blot (A, C, E,andG) analysis confirmed knockdown of GSR and/or GCLC in DFC1024 and H2023 lung cancer cell lines. B, D, F,andH, Auranofin sensitivity of the knockdown cells and of the parental and control cells (shControl and siControl) was determined by a quadruplicate assay. The values represent mean SD.
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Targeting Cancers with Glutathione Reductase Deficiency