Dystroglycan Mediates Homeostatic Synaptic Plasticity at Gabaergic Synapses
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Research Paper Expression of the Pokemon Gene and Pikachurin Protein in the Pokémon Pikachu
Academia Journal of Scientific Research 8(7): 235-238, July 2020 DOI: 10.15413/ajsr.2020.0503 ISSN 2315-7712 ©2020 Academia Publishing Research Paper Expression of the pokemon gene and pikachurin protein in the pokémon pikachu Accepted 13th July, 2020 ABSTRACT The proto-oncogene Pokemon is typically over expressed in cancers, and the protein Pikachurin is associated with ribbon synapses in the retina. Studying the Samuel Oak1; Ganka Joy2 and Mattan Schlomi1* former is of interest in molecular oncology and the latter in the neurodevelopment of vision. We quantified the expression levels of Pokemon and Pikachurin in the 1Okido Institute, Pallet Town, Kanto, Japan. 2Department of Opthalmology, Tokiwa City Pokémon Pikachu, where the gene and protein both act as in other vertebrates. Pokémon Center, Viridian City, Kanto, Japan. The controversy over their naming remains an issue. *Corresponding author. E-mail: [email protected]. Tel: +81 3-3529-1821 Key words: Pikachurin, EGFLAM, fibronectin, pokemon, Zbtb7, Pikachu. INTRODUCTION Pokemon is a proto-oncogene discovered in 2005 (Maeda et confusing, they do avoid the controversies associated with al., 2005). It is a “master gene” for cancer: over expression naming a disease-related gene after adorable, child-friendly of Pokemon is positively associated with multiple different creatures. [For more information, consider the forms of cancer, and some hypothesize that its expression is holoprosencephaly-associated gene sonic hedgehog and the a prerequisite for subsequent oncogenes [cancer-causing molecule that inhibits it, Robotnikin (Stanton et al., 2009)]. genes] to actually cause cancer (Gupta et al., 2020). The The gene Pokemon is thus not to be confused with name stands for POK erythroid myeloid ontogenic factor. -
Mouse Egflam Knockout Project (CRISPR/Cas9)
https://www.alphaknockout.com Mouse Egflam Knockout Project (CRISPR/Cas9) Objective: To create a Egflam knockout Mouse model (C57BL/6J) by CRISPR/Cas-mediated genome engineering. Strategy summary: The Egflam gene (NCBI Reference Sequence: NM_001289496 ; Ensembl: ENSMUSG00000042961 ) is located on Mouse chromosome 15. 23 exons are identified, with the ATG start codon in exon 1 and the TAA stop codon in exon 23 (Transcript: ENSMUST00000096494). Exon 2~3 will be selected as target site. Cas9 and gRNA will be co-injected into fertilized eggs for KO Mouse production. The pups will be genotyped by PCR followed by sequencing analysis. Note: Homozygous null mutants are viable and fertile under normal conditions. They exhibit abnormal photoreceptor ribbon synapses, resulting in alteration in synaptic signal transmission and visual function. Exon 2 starts from about 3.21% of the coding region. Exon 2~3 covers 6.36% of the coding region. The size of effective KO region: ~1952 bp. The KO region does not have any other known gene. Page 1 of 9 https://www.alphaknockout.com Overview of the Targeting Strategy Wildtype allele 5' gRNA region gRNA region 3' 1 2 3 23 Legends Exon of mouse Egflam Knockout region Page 2 of 9 https://www.alphaknockout.com Overview of the Dot Plot (up) Window size: 15 bp Forward Reverse Complement Sequence 12 Note: The 2000 bp section upstream of Exon 2 is aligned with itself to determine if there are tandem repeats. No significant tandem repeat is found in the dot plot matrix. So this region is suitable for PCR screening or sequencing analysis. -
The Roles of A-Dystroglycan in the Central Nervous System- Man Qi Li1 and Yi Luo2*
International Journal of Neurological Disorders Review Article The Roles of A-Dystroglycan in the Central Nervous System- Man Qi Li1 and Yi Luo2* 1Department of Foreign Language, Yangtze University College of Arts and Science, Jing zhou 434000, China 2Department of Neurology, The First People’s Hospital of Jingzhou, the First Affiliated Hospital of Yangtze University, Jing zhou 434000, China *Address for Correspondence: Yi Luo, Department of Neurology, The First People’s Hospital of Jingzhou, the First Affiliated Hospital of Yangtze University, Jing zhou 434000, China, E-mail: Submitted: 12 December 2019; Approved: 02 January 2020; Published: 04 January 2020 Cite this article: Li MQ, Luo Y. The Roles of Α-Dystroglycan in the Central Nervous System. Int J Neurol Dis. 2020;4(1): 001-004. Copyright: © 2020 Li MQ, et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. ISSN: 2639-7021 International Journal of Neurological Disorders ISSN: 2639-7021 ABSTRACT Dystroglycan is a membrane protein, which is related to extracellular matrix in various mammalian tissues. α-subunit of Dystroglycan (α-DG) is highly glycosylated, including a special O-mannose group, depending on this unique glycosylation to bind its ligands. Diff erent groups of muscular dystrophies are caused by a low glycosylation of α-DG, accompanied by the involvement of the central nervous system, from the brain malformation to intellectual retardation. More and more literatures discuss α-DG in the central nervous system, from the brain development to the maintenance of synapses. -
Dystroglycan Is a Scaffold for Extracellular Axon Guidance Decisions L Bailey Lindenmaier1, Nicolas Parmentier2, Caiying Guo3, Fadel Tissir2, Kevin M Wright1*
RESEARCH ARTICLE Dystroglycan is a scaffold for extracellular axon guidance decisions L Bailey Lindenmaier1, Nicolas Parmentier2, Caiying Guo3, Fadel Tissir2, Kevin M Wright1* 1Vollum Institute, Oregon Health & Science University, Portland, United States; 2Institiute of Neuroscience, Universite´ Catholique de Louvain, Brussels, Belgium; 3Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, United States Abstract Axon guidance requires interactions between extracellular signaling molecules and transmembrane receptors, but how appropriate context-dependent decisions are coordinated outside the cell remains unclear. Here we show that the transmembrane glycoprotein Dystroglycan interacts with a changing set of environmental cues that regulate the trajectories of extending axons throughout the mammalian brain and spinal cord. Dystroglycan operates primarily as an extracellular scaffold during axon guidance, as it functions non-cell autonomously and does not require signaling through its intracellular domain. We identify the transmembrane receptor Celsr3/ Adgrc3 as a binding partner for Dystroglycan, and show that this interaction is critical for specific axon guidance events in vivo. These findings establish Dystroglycan as a multifunctional scaffold that coordinates extracellular matrix proteins, secreted cues, and transmembrane receptors to regulate axon guidance. DOI: https://doi.org/10.7554/eLife.42143.001 Introduction During neural circuit development, extending axons encounter distinct combinations of cues and *For correspondence: growth substrates that guide their trajectory. These cues can be attractive or repulsive, secreted [email protected] and/or anchored to cell membranes, and signal through cell surface receptors on the growth cones of axons (Kolodkin and Tessier-Lavigne, 2011). Receptors also recognize permissive and non-per- Competing interest: See missive growth substrates formed by the extracellular matrix (ECM), surrounding cells, and other page 21 axons (Raper and Mason, 2010). -
Promoter Alteration Causes Transcriptional Repression of the POMGNT1 Gene in Limb-Girdle Muscular Dystrophy Type 2O
European Journal of Human Genetics (2012) 20, 945–952 & 2012 Macmillan Publishers Limited All rights reserved 1018-4813/12 www.nature.com/ejhg ARTICLE Promoter alteration causes transcriptional repression of the POMGNT1 gene in limb-girdle muscular dystrophy type 2O Madalina Raducu1, Jonathan Baets2,3, Oihane Fano1, Rudy Van Coster4 and Jesu´s Cruces*,1 Limb-girdle muscular dystrophy type 2O (LGMD2O) belongs to a group of rare muscular dystrophies named dystroglycanopathies, which are characterized molecularly by hypoglycosylation of a-dystroglycan (a-DG). Here, we describe the first dystroglycanopathy patient carrying an alteration in the promoter region of the POMGNT1 gene (protein O-mannose b-1,2-N-acetylglucosaminyltransferase 1), which involves a homozygous 9-bp duplication (-83_-75dup). Analysis of the downstream effects of this mutation revealed a decrease in the expression of POMGNT1 mRNA and protein because of negative regulation of the POMGNT1 promoter by the transcription factor ZNF202 (zinc-finger protein 202). By functional analysis of various luciferase constructs, we localized a proximal POMGNT1 promoter and we found a 75% decrease in luciferase activity in the mutant construct when compared with the wild type. Electrophoretic mobility shift assay (EMSA) revealed binding sites for the Sp1, Ets1 and GATA transcription factors. Surprisingly, the mutation generated an additional ZNF202 binding site and this transcriptional repressor bound strongly to the mutant promoter while failing to recognize the wild-type promoter. Although the genetic causes of dystroglycanopathies are highly variable, they account for only 50% of the cases described. Our results emphasize the importance of extending the mutational screening outside the gene-coding region in dystroglycanopathy patients of unknown aetiology, because mutations in noncoding regions may be the cause of disease. -
LARGE Expression in Different Types of Muscular Dystrophies Other Than Dystroglycanopathy Burcu Balci-Hayta1*, Beril Talim2, Gulsev Kale2 and Pervin Dincer1
Balci-Hayta et al. BMC Neurology (2018) 18:207 https://doi.org/10.1186/s12883-018-1207-0 RESEARCHARTICLE Open Access LARGE expression in different types of muscular dystrophies other than dystroglycanopathy Burcu Balci-Hayta1*, Beril Talim2, Gulsev Kale2 and Pervin Dincer1 Abstract Background: Alpha-dystroglycan (αDG) is an extracellular peripheral glycoprotein that acts as a receptor for both extracellular matrix proteins containing laminin globular domains and certain arenaviruses. An important enzyme, known as Like-acetylglucosaminyltransferase (LARGE), has been shown to transfer repeating units of -glucuronic acid-β1,3-xylose-α1,3- (matriglycan) to αDG that is required for functional receptor as an extracellular matrix protein scaffold. The reduction in the amount of LARGE-dependent matriglycan result in heterogeneous forms of dystroglycanopathy that is associated with hypoglycosylation of αDG and a consequent lack of ligand-binding activity. Our aim was to investigate whether LARGE expression showed correlation with glycosylation of αDG and histopathological parameters in different types of muscular dystrophies, except for dystroglycanopathies. Methods: The expression level of LARGE and glycosylation status of αDG were examined in skeletal muscle biopsies from 26 patients with various forms of muscular dystrophy [Duchenne muscular dystrophy (DMD), Becker muscular dystrophy (BMD), sarcoglycanopathy, dysferlinopathy, calpainopathy, and merosin and collagen VI deficient congenital muscular dystrophies (CMDs)] and correlation of results with different histopathological features was investigated. Results: Despite the fact that these diseases are not caused by defects of glycosyltransferases, decreased expression of LARGE was detected in many patient samples, partly correlating with the type of muscular dystrophy. Although immunolabelling of fully glycosylated αDG with VIA4–1 was reduced in dystrophinopathy patients, no significant relationship between reduction of LARGE expression and αDG hypoglycosylation was detected. -
New Dystrophin/Dystroglycan Interactors Control Neuron Behavior
Marrone et al. BMC Neuroscience 2011, 12:93 http://www.biomedcentral.com/1471-2202/12/93 RESEARCHARTICLE Open Access New Dystrophin/Dystroglycan interactors control neuron behavior in Drosophila eye April K Marrone1†, Mariya M Kucherenko1†, Valentyna M Rishko1,2† and Halyna R Shcherbata1* Abstract Background: The Dystrophin Glycoprotein Complex (DGC) is a large multi-component complex that is well known for its function in muscle tissue. When the main components of the DGC, Dystrophin (Dys) and Dystroglycan (Dg) are affected cognitive impairment and mental retardation in addition to muscle degeneration can occur. Previously we performed an array of genetic screens using a Drosophila model for muscular dystrophy in order to find novel DGC interactors aiming to elucidate the signaling role(s) in which the complex is involved. Since the function of the DGC in the brain and nervous system has not been fully defined, we have here continued to analyze the DGC modifiers’ function in the developing Drosophila brain and eye. Results: Given that disruption of Dys and Dg leads to improper photoreceptor axon projections into the lamina and eye neuron elongation defects during development, we have determined the function of previously screened components and their genetic interaction with the DGC in this tissue. Our study first found that mutations in chif, CG34400, Nrk, Lis1, capt and Cam cause improper axon path-finding and loss of SP2353, Grh, Nrk, capt, CG34400, vimar, Lis1 and Cam cause shortened rhabdomere lengths. We determined that Nrk, mbl, capt and Cam genetically interact with Dys and/or Dg in these processes. It is notable that most of the neuronal DGC interacting components encountered are involved in regulation of actin dynamics. -
Antibodieseses F F Orforor Neuroscience Neurneoscieuroscienncece
antibodiantibodiantibodieseses f f orforor neuroscience neurneoscieuroscienncece ptglab.coptglab.comm antibodies people trust ptglab.com antibodies people trust ptglab.com antibodies people trust Antibodies for Neuroscience 3 PROTEINTECH: SETTING THE BENCHMARK IN ANTIBODIES ORIGINAL MANUFACTURER Part of Proteintech’s early vision was to make all its own products, to the highest standards possible, thus assuming ultimate responsibility for their quality. In addition ORIGINAL PRODUCTS to its founders’ refusal to source a single antibody from any other provider, they also refused to supply any other provider. When you receive your antibody and see the Proteintech logo on the vial, know that you hold something that is truly unique. As an original manufacturer, Proteintech can offer you: • 100% original products; each product is unique and can only be bought directly or through approved distributors. • Antibodies now tested in siRNA–treated samples to demonstrate antibody specificity. • Guaranteed to work in any species and any applications, or get your money back. siRNA Recently, Proteintech has pledged to undertake siRNA knockdown validation of most of its antibodies by the end of 2015. The specificities of over 550 of its antibodies VALIDATION have already been confirmed by customers using siRNA knockdown, and published in over 650 journal papers. In adding its own siRNA data to those previously available in the literature, Proteintech’s aim is to make a gold standard of antibody validation more accessible to its customers. • Help set a -
Temporal Properties of Cone Ergs of Pikachurin Null Mutant Mouse
Visual Neuroscience Temporal Properties of Cone ERGs of Pikachurin Null Mutant Mouse Taro Kominami,1 Shinji Ueno,1 Ayami Nakanishi,1 Azusa Kominami,1 Mineo Kondo,2 Takahisa Furukawa,3 and Hiroko Terasaki1 1Department of Ophthalmology, Nagoya University Graduate School of Medicine, Nagoya, Japan 2Department of Ophthalmology, Mie University Graduate School of Medicine, Tsu, Japan 3Laboratory for Molecular and Developmental Biology, Institute for Protein Research, Osaka University, Osaka, Japan Correspondence: Shinji Ueno, 65 PURPOSE. Pikachurin is an extracellular matrix-like protein located in the synaptic cleft of Tsuruma-cho, Showa-ku, Nagoya photoreceptors. Pikachurin null mutant (PikaÀ/À) mice have abnormal ON bipolar cell 466-8550, Japan; function. This study aimed to determine the contribution of the ON bipolar cell pathway (ON [email protected]. pathway) of PikaÀ/À mice to the flicker ERG response and, using vector analysis, identify how Submitted: July 16, 2015 the contribution varies with the stimulus frequency. Accepted: February 8, 2016 METHODS. Flicker ERGs were recorded from wild-type (WT), PikaÀ/À, and mGluR6 null mutant Citation: Kominami T, Ueno S, Naka- (mGluR6À/À) mice. The frequency of stimulation was 3.906 to 31.250 Hz. The amplitude and nishi A, et al. Temporal properties of phase of the fundamental components were obtained by harmonic and vector model analysis. cone ERGs of Pikachurin null mutant The mGluR6À/À mice were used as a model wherein the ON pathway is known to be absent. mouse. Invest Ophthalmol Vis Sci. 2016;57:1264–1269. DOI:10.1167/ RESULTS. The amplitudes of the fundamental components of the PikaÀ/À mice were iovs.15-17708 significantly smaller than those of WT mice for stimulation frequencies between 3.906 and 17.578 Hz. -
Identification of Genes Responsible for Maintenance of Differentiation Capability in Dental Pulp Stem Cells Michael B
Louisiana State University LSU Digital Commons LSU Doctoral Dissertations Graduate School 2013 Identification of genes responsible for maintenance of differentiation capability in dental pulp stem cells Michael B. Flanagan Louisiana State University and Agricultural and Mechanical College Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_dissertations Part of the Medicine and Health Sciences Commons Recommended Citation Flanagan, Michael B., "Identification of genes responsible for maintenance of differentiation capability in dental pulp stem cells" (2013). LSU Doctoral Dissertations. 3709. https://digitalcommons.lsu.edu/gradschool_dissertations/3709 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Doctoral Dissertations by an authorized graduate school editor of LSU Digital Commons. For more information, please [email protected]. IDENTIFICATION OF GENES RESPONSIBLE FOR MAINTENANCE OF DIFFERENTIATION CAPABILITY IN DENTAL PULP STEM CELLS A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Doctor of Philosophy in The Interdepartmental Program in Veterinary Medical Science through The Department of Comparative Biomedical Sciences by Michael Brian Flanagan B.S., Spring Hill College, 2003 December 2013 ACKNOWLEDGEMENTS The accomplishments and milestones I have reached during my studies are not mine alone. I would not be here without a strong array of supporters. I’d like to begin by thanking my advisor, Dr. Shaomian Yao. Over the years his patience, guidance, and tireless support have continued to help me grow into a better researcher. -
The Roles of the Dystrophin-Associated Glycoprotein Complex at the Synapse
Mol Neurobiol (2010) 41:1–21 DOI 10.1007/s12035-009-8089-5 The Roles of the Dystrophin-Associated Glycoprotein Complex at the Synapse Gonneke S. K. Pilgram & Saranyapin Potikanond & Richard A. Baines & Lee G. Fradkin & Jasprina N. Noordermeer Received: 24 August 2009 /Accepted: 15 October 2009 /Published online: 9 November 2009 # The Author(s) 2009. This article is published with open access at Springerlink.com Abstract Duchenne muscular dystrophy is caused by muta- Keywords Dystrophin . DGC . NMJ . CNS . PNS . Retina . tions in the dystrophin gene and is characterized by Duchenne muscular dystrophy . Mammals . Drosophila . progressive muscle wasting. A number of Duchenne patients C. elegans also present with mental retardation. The dystrophin protein is part of the highly conserved dystrophin-associated glyco- Abbreviations protein complex (DGC) which accumulates at the neuromus- ACh Acetylcholine cular junction (NMJ) and at a variety of synapses in the AChR Acetylcholine receptor peripheral and central nervous systems. Many years of Akt Protein kinase B research into the roles of the DGC in muscle have revealed BMP Bone morphogenetic protein its structural function in stabilizing the sarcolemma. In Ca2+ Calcium ion addition, the DGC also acts as a scaffold for various signaling CaMKII Ca2+/calmodulin-dependent protein kinase II pathways. Here, we discuss recent advances in understanding cGMP Cyclic guanosine monophosphate DGC roles in the nervous system, gained from studies in both CNS Central nervous system vertebrate and invertebrate model systems. From these DGC Dystrophin-associated glycoprotein complex studies, it has become clear that the DGC is important for DMD Duchenne muscular dystrophy the maturation of neurotransmitter receptor complexes and for EPSP Excitatory postsynaptic potential the regulation of neurotransmitter release at the NMJ and ERG Electroretinogram central synapses. -
Determining the Causes of Recessive Retinal Dystrophy
Determining the causes of recessive retinal dystrophy By Mohammed El-Sayed Mohammed El-Asrag BSc (hons), MSc (hons) Genetics and Molecular Biology Submitted in accordance with the requirements for the degree of Doctor of Philosophy The University of Leeds School of Medicine September 2016 The candidate confirms that the work submitted is his own, except where work which has formed part of jointly- authored publications has been included. The contribution of the candidate and the other authors to this work has been explicitly indicated overleaf. The candidate confirms that appropriate credit has been given within the thesis where reference has been made to the work of others. This copy has been supplied on the understanding that it is copyright material and that no quotation from the thesis may be published without proper acknowledgement. The right of Mohammed El-Sayed Mohammed El-Asrag to be identified as author of this work has been asserted by his in accordance with the Copyright, Designs and Patents Act 1988. © 2016 The University of Leeds and Mohammed El-Sayed Mohammed El-Asrag Jointly authored publications statement Chapter 3 (first results chapter) of this thesis is entirely the work of the author and appears in: Watson CM*, El-Asrag ME*, Parry DA, Morgan JE, Logan CV, Carr IM, Sheridan E, Charlton R, Johnson CA, Taylor G, Toomes C, McKibbin M, Inglehearn CF and Ali M (2014). Mutation screening of retinal dystrophy patients by targeted capture from tagged pooled DNAs and next generation sequencing. PLoS One 9(8): e104281. *Equal first- authors. Shevach E, Ali M, Mizrahi-Meissonnier L, McKibbin M, El-Asrag ME, Watson CM, Inglehearn CF, Ben-Yosef T, Blumenfeld A, Jalas C, Banin E and Sharon D (2015).