PP Chapter 05 Experiments and Observational Studies-Revised
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Data Collection: Randomized Experiments
9/2/15 STAT 250 Dr. Kari Lock Morgan Knee Surgery for Arthritis Researchers conducted a study on the effectiveness of a knee surgery to cure arthritis. Collecting Data: It was randomly determined whether people got Randomized Experiments the knee surgery. Everyone who underwent the surgery reported feeling less pain. SECTION 1.3 Is this evidence that the surgery causes a • Control/comparison group decrease in pain? • Clinical trials • Placebo Effect (a) Yes • Blinding • Crossover studies / Matched pairs (b) No Statistics: Unlocking the Power of Data Lock5 Statistics: Unlocking the Power of Data Lock5 Control Group Clinical Trials Clinical trials are randomized experiments When determining whether a treatment is dealing with medicine or medical interventions, effective, it is important to have a comparison conducted on human subjects group, known as the control group Clinical trials require additional aspects, beyond just randomization to treatment groups: All randomized experiments need a control or ¡ Placebo comparison group (could be two different ¡ Double-blind treatments) Statistics: Unlocking the Power of Data Lock5 Statistics: Unlocking the Power of Data Lock5 Placebo Effect Study on Placebos Often, people will experience the effect they think they should be experiencing, even if they aren’t actually Blue pills are better than yellow pills receiving the treatment. This is known as the placebo effect. Red pills are better than blue pills Example: Eurotrip 2 pills are better than 1 pill One study estimated that 75% of the -
Chapter 4: Fisher's Exact Test in Completely Randomized Experiments
1 Chapter 4: Fisher’s Exact Test in Completely Randomized Experiments Fisher (1925, 1926) was concerned with testing hypotheses regarding the effect of treat- ments. Specifically, he focused on testing sharp null hypotheses, that is, null hypotheses under which all potential outcomes are known exactly. Under such null hypotheses all un- known quantities in Table 4 in Chapter 1 are known–there are no missing data anymore. As we shall see, this implies that we can figure out the distribution of any statistic generated by the randomization. Fisher’s great insight concerns the value of the physical randomization of the treatments for inference. Fisher’s classic example is that of the tea-drinking lady: “A lady declares that by tasting a cup of tea made with milk she can discriminate whether the milk or the tea infusion was first added to the cup. ... Our experi- ment consists in mixing eight cups of tea, four in one way and four in the other, and presenting them to the subject in random order. ... Her task is to divide the cups into two sets of 4, agreeing, if possible, with the treatments received. ... The element in the experimental procedure which contains the essential safeguard is that the two modifications of the test beverage are to be prepared “in random order.” This is in fact the only point in the experimental procedure in which the laws of chance, which are to be in exclusive control of our frequency distribution, have been explicitly introduced. ... it may be said that the simple precaution of randomisation will suffice to guarantee the validity of the test of significance, by which the result of the experiment is to be judged.” The approach is clear: an experiment is designed to evaluate the lady’s claim to be able to discriminate wether the milk or tea was first poured into the cup. -
Removing Hidden Confounding by Experimental Grounding
Removing Hidden Confounding by Experimental Grounding Nathan Kallus Aahlad Manas Puli Uri Shalit Cornell University and Cornell Tech New York University Technion New York, NY New York, NY Haifa, Israel [email protected] [email protected] [email protected] Abstract Observational data is increasingly used as a means for making individual-level causal predictions and intervention recommendations. The foremost challenge of causal inference from observational data is hidden confounding, whose presence cannot be tested in data and can invalidate any causal conclusion. Experimental data does not suffer from confounding but is usually limited in both scope and scale. We introduce a novel method of using limited experimental data to correct the hidden confounding in causal effect models trained on larger observational data, even if the observational data does not fully overlap with the experimental data. Our method makes strictly weaker assumptions than existing approaches, and we prove conditions under which it yields a consistent estimator. We demonstrate our method’s efficacy using real-world data from a large educational experiment. 1 Introduction In domains such as healthcare, education, and marketing there is growing interest in using observa- tional data to draw causal conclusions about individual-level effects; for example, using electronic healthcare records to determine which patients should get what treatments, using school records to optimize educational policy interventions, or using past advertising campaign data to refine targeting and maximize lift. Observational datasets, due to their often very large number of samples and exhaustive scope (many measured covariates) in comparison to experimental datasets, offer a unique opportunity to uncover fine-grained effects that may apply to many target populations. -
Observational Clinical Research
E REVIEW ARTICLE Clinical Research Methodology 2: Observational Clinical Research Daniel I. Sessler, MD, and Peter B. Imrey, PhD * † Case-control and cohort studies are invaluable research tools and provide the strongest fea- sible research designs for addressing some questions. Case-control studies usually involve retrospective data collection. Cohort studies can involve retrospective, ambidirectional, or prospective data collection. Observational studies are subject to errors attributable to selec- tion bias, confounding, measurement bias, and reverse causation—in addition to errors of chance. Confounding can be statistically controlled to the extent that potential factors are known and accurately measured, but, in practice, bias and unknown confounders usually remain additional potential sources of error, often of unknown magnitude and clinical impact. Causality—the most clinically useful relation between exposure and outcome—can rarely be defnitively determined from observational studies because intentional, controlled manipu- lations of exposures are not involved. In this article, we review several types of observa- tional clinical research: case series, comparative case-control and cohort studies, and hybrid designs in which case-control analyses are performed on selected members of cohorts. We also discuss the analytic issues that arise when groups to be compared in an observational study, such as patients receiving different therapies, are not comparable in other respects. (Anesth Analg 2015;121:1043–51) bservational clinical studies are attractive because Group, and the American Society of Anesthesiologists they are relatively inexpensive and, perhaps more Anesthesia Quality Institute. importantly, can be performed quickly if the required Recent retrospective perioperative studies include data O 1,2 data are already available. -
Confounding Bias, Part I
ERIC NOTEBOOK SERIES Second Edition Confounding Bias, Part I Confounding is one type of Second Edition Authors: Confounding is also a form a systematic error that can occur in bias. Confounding is a bias because it Lorraine K. Alexander, DrPH epidemiologic studies. Other types of can result in a distortion in the systematic error such as information measure of association between an Brettania Lopes, MPH bias or selection bias are discussed exposure and health outcome. in other ERIC notebook issues. Kristen Ricchetti-Masterson, MSPH Confounding may be present in any Confounding is an important concept Karin B. Yeatts, PhD, MS study design (i.e., cohort, case-control, in epidemiology, because, if present, observational, ecological), primarily it can cause an over- or under- because it's not a result of the study estimate of the observed association design. However, of all study designs, between exposure and health ecological studies are the most outcome. The distortion introduced susceptible to confounding, because it by a confounding factor can be large, is more difficult to control for and it can even change the apparent confounders at the aggregate level of direction of an effect. However, data. In all other cases, as long as unlike selection and information there are available data on potential bias, it can be adjusted for in the confounders, they can be adjusted for analysis. during analysis. What is confounding? Confounding should be of concern Confounding is the distortion of the under the following conditions: association between an exposure 1. Evaluating an exposure-health and health outcome by an outcome association. -
The Theory of the Design of Experiments
The Theory of the Design of Experiments D.R. COX Honorary Fellow Nuffield College Oxford, UK AND N. REID Professor of Statistics University of Toronto, Canada CHAPMAN & HALL/CRC Boca Raton London New York Washington, D.C. C195X/disclaimer Page 1 Friday, April 28, 2000 10:59 AM Library of Congress Cataloging-in-Publication Data Cox, D. R. (David Roxbee) The theory of the design of experiments / D. R. Cox, N. Reid. p. cm. — (Monographs on statistics and applied probability ; 86) Includes bibliographical references and index. ISBN 1-58488-195-X (alk. paper) 1. Experimental design. I. Reid, N. II.Title. III. Series. QA279 .C73 2000 001.4 '34 —dc21 00-029529 CIP This book contains information obtained from authentic and highly regarded sources. Reprinted material is quoted with permission, and sources are indicated. A wide variety of references are listed. Reasonable efforts have been made to publish reliable data and information, but the author and the publisher cannot assume responsibility for the validity of all materials or for the consequences of their use. Neither this book nor any part may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopying, microfilming, and recording, or by any information storage or retrieval system, without prior permission in writing from the publisher. The consent of CRC Press LLC does not extend to copying for general distribution, for promotion, for creating new works, or for resale. Specific permission must be obtained in writing from CRC Press LLC for such copying. Direct all inquiries to CRC Press LLC, 2000 N.W. -
Observational Studies and Bias in Epidemiology
The Young Epidemiology Scholars Program (YES) is supported by The Robert Wood Johnson Foundation and administered by the College Board. Observational Studies and Bias in Epidemiology Manuel Bayona Department of Epidemiology School of Public Health University of North Texas Fort Worth, Texas and Chris Olsen Mathematics Department George Washington High School Cedar Rapids, Iowa Observational Studies and Bias in Epidemiology Contents Lesson Plan . 3 The Logic of Inference in Science . 8 The Logic of Observational Studies and the Problem of Bias . 15 Characteristics of the Relative Risk When Random Sampling . and Not . 19 Types of Bias . 20 Selection Bias . 21 Information Bias . 23 Conclusion . 24 Take-Home, Open-Book Quiz (Student Version) . 25 Take-Home, Open-Book Quiz (Teacher’s Answer Key) . 27 In-Class Exercise (Student Version) . 30 In-Class Exercise (Teacher’s Answer Key) . 32 Bias in Epidemiologic Research (Examination) (Student Version) . 33 Bias in Epidemiologic Research (Examination with Answers) (Teacher’s Answer Key) . 35 Copyright © 2004 by College Entrance Examination Board. All rights reserved. College Board, SAT and the acorn logo are registered trademarks of the College Entrance Examination Board. Other products and services may be trademarks of their respective owners. Visit College Board on the Web: www.collegeboard.com. Copyright © 2004. All rights reserved. 2 Observational Studies and Bias in Epidemiology Lesson Plan TITLE: Observational Studies and Bias in Epidemiology SUBJECT AREA: Biology, mathematics, statistics, environmental and health sciences GOAL: To identify and appreciate the effects of bias in epidemiologic research OBJECTIVES: 1. Introduce students to the principles and methods for interpreting the results of epidemio- logic research and bias 2. -
Study Types Transcript
Study Types in Epidemiology Transcript Study Types in Epidemiology Welcome to “Study Types in Epidemiology.” My name is John Kobayashi. I’m on the Clinical Faculty at the Northwest Center for Public Health Practice, at the School of Public Health and Community Medicine, University of Washington in Seattle. From 1982 to 2001, I was the state epidemiologist for Communicable Diseases at the Washington State Department of Health. Since 2001, I’ve also been the foreign adviser for the Field Epidemiology Training Program of Japan. About this Module The modules in the epidemiology series from the Northwest Center for Public Health Practice are intended for people working in the field of public health who are not epidemiologists, but who would like to increase their understanding of the epidemiologic approach to health and disease. This module focuses on descriptive and analytic epide- miology and their respective study designs. Before you go on with this module, we recommend that you become familiar with the following modules, which you can find on the Center’s Web site: What is Epidemiology in Public Health? and Data Interpretation for Public Health Professionals. We introduce a number of new terms in this module. If you want to review their definitions, the glossary in the attachments link at the top of the screen may be useful. Objectives By now, you should be familiar with the overall approach of epidemiology, the use of various kinds of rates to measure disease frequency, and the various ways in which epidemiologic data can be presented. This module offers an overview of descriptive and analytic epidemiology and the types of studies used to review and investigate disease occurrence and causes. -
Beyond Controlling for Confounding: Design Strategies to Avoid Selection Bias and Improve Efficiency in Observational Studies
September 27, 2018 Beyond Controlling for Confounding: Design Strategies to Avoid Selection Bias and Improve Efficiency in Observational Studies A Case Study of Screening Colonoscopy Our Team Xabier Garcia de Albeniz Martinez +34 93.3624732 [email protected] Bradley Layton 919.541.8885 [email protected] 2 Poll Questions Poll question 1 Ice breaker: Which of the following study designs is best to evaluate the causal effect of a medical intervention? Cross-sectional study Case series Case-control study Prospective cohort study Randomized, controlled clinical trial 3 We All Trust RCTs… Why? • Obvious reasons – No confusion (i.e., exchangeability) • Not so obvious reasons – Exposure represented at all levels of potential confounders (i.e., positivity) – Therapeutic intervention is well defined (i.e., consistency) – … And, because of the alignment of eligibility, exposure assignment and the start of follow-up (we’ll soon see why is this important) ? RCT = randomized clinical trial. 4 Poll Questions We just used the C-word: “causal” effect Poll question 2 Which of the following is true? In pharmacoepidemiology, we work to ensure that drugs are effective and safe for the population In pharmacoepidemiology, we want to know if a drug causes an undesired toxicity Causal inference from observational data can be questionable, but being explicit about the causal goal and the validity conditions help inform a scientific discussion All of the above 5 In Pharmacoepidemiology, We Try to Infer Causes • These are good times to be an epidemiologist -
Study Designs in Biomedical Research
STUDY DESIGNS IN BIOMEDICAL RESEARCH INTRODUCTION TO CLINICAL TRIALS SOME TERMINOLOGIES Research Designs: Methods for data collection Clinical Studies: Class of all scientific approaches to evaluate Disease Prevention, Diagnostics, and Treatments. Clinical Trials: Subset of clinical studies that evaluates Investigational Drugs; they are in prospective/longitudinal form (the basic nature of trials is prospective). TYPICAL CLINICAL TRIAL Study Initiation Study Termination No subjects enrolled after π1 0 π1 π2 Enrollment Period, e.g. Follow-up Period, e.g. three (3) years two (2) years OPERATION: Patients come sequentially; each is enrolled & randomized to receive one of two or several treatments, and followed for varying amount of time- between π1 & π2 In clinical trials, investigators apply an “intervention” and observe the effect on outcomes. The major advantage is the ability to demonstrate causality; in particular: (1) random assigning subjects to intervention helps to reduce or eliminate the influence of confounders, and (2) blinding its administration helps to reduce or eliminate the effect of biases from ascertainment of the outcome. Clinical Trials form a subset of cohort studies but not all cohort studies are clinical trials because not every research question is amenable to the clinical trial design. For example: (1) By ethical reasons, we cannot assign subjects to smoking in a trial in order to learn about its harmful effects, or (2) It is not feasible to study whether drug treatment of high LDL-cholesterol in children will prevent heart attacks many decades later. In addition, clinical trials are generally expensive, time consuming, address narrow clinical questions, and sometimes expose participants to potential harm. -
Design of Engineering Experiments Blocking & Confounding in the 2K
Design of Engineering Experiments Blocking & Confounding in the 2 k • Text reference, Chapter 7 • Blocking is a technique for dealing with controllable nuisance variables • Two cases are considered – Replicated designs – Unreplicated designs Chapter 7 Design & Analysis of Experiments 1 8E 2012 Montgomery Chapter 7 Design & Analysis of Experiments 2 8E 2012 Montgomery Blocking a Replicated Design • This is the same scenario discussed previously in Chapter 5 • If there are n replicates of the design, then each replicate is a block • Each replicate is run in one of the blocks (time periods, batches of raw material, etc.) • Runs within the block are randomized Chapter 7 Design & Analysis of Experiments 3 8E 2012 Montgomery Blocking a Replicated Design Consider the example from Section 6-2 (next slide); k = 2 factors, n = 3 replicates This is the “usual” method for calculating a block 3 B2 y 2 sum of squares =i − ... SS Blocks ∑ i=1 4 12 = 6.50 Chapter 7 Design & Analysis of Experiments 4 8E 2012 Montgomery 6-2: The Simplest Case: The 22 Chemical Process Example (1) (a) (b) (ab) A = reactant concentration, B = catalyst amount, y = recovery ANOVA for the Blocked Design Page 305 Chapter 7 Design & Analysis of Experiments 6 8E 2012 Montgomery Confounding in Blocks • Confounding is a design technique for arranging a complete factorial experiment in blocks, where the block size is smaller than the number of treatment combinations in one replicate. • Now consider the unreplicated case • Clearly the previous discussion does not apply, since there -
Chapter 5 Experiments, Good And
Chapter 5 Experiments, Good and Bad Point of both observational studies and designed experiments is to identify variable or set of variables, called explanatory variables, which are thought to predict outcome or response variable. Confounding between explanatory variables occurs when two or more explanatory variables are not separated and so it is not clear how much each explanatory variable contributes in prediction of response variable. Lurking variable is explanatory variable not considered in study but confounded with one or more explanatory variables in study. Confounding with lurking variables effectively reduced in randomized comparative experiments where subjects are assigned to treatments at random. Confounding with a (only one at a time) lurking variable reduced in observational studies by controlling for it by comparing matched groups. Consequently, experiments much more effec- tive than observed studies at detecting which explanatory variables cause differences in response. In both cases, statistically significant observed differences in average responses implies differences are \real", did not occur by chance alone. Exercise 5.1 (Experiments, Good and Bad) 1. Randomized comparative experiment: effect of temperature on mice rate of oxy- gen consumption. For example, mice rate of oxygen consumption 10.3 mL/sec when subjected to 10o F. temperature (Fo) 0 10 20 30 ROC (mL/sec) 9.7 10.3 11.2 14.0 (a) Explanatory variable considered in study is (choose one) i. temperature ii. rate of oxygen consumption iii. mice iv. mouse weight 25 26 Chapter 5. Experiments, Good and Bad (ATTENDANCE 3) (b) Response is (choose one) i. temperature ii. rate of oxygen consumption iii.