Taxonomy and Phylogeny of Animals
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Species Concepts Should Not Conflict with Evolutionary History, but Often Do
ARTICLE IN PRESS Stud. Hist. Phil. Biol. & Biomed. Sci. xxx (2008) xxx–xxx Contents lists available at ScienceDirect Stud. Hist. Phil. Biol. & Biomed. Sci. journal homepage: www.elsevier.com/locate/shpsc Species concepts should not conflict with evolutionary history, but often do Joel D. Velasco Department of Philosophy, University of Wisconsin-Madison, 5185 White Hall, 600 North Park St., Madison, WI 53719, USA Department of Philosophy, Building 90, Stanford University, Stanford, CA 94305, USA article info abstract Keywords: Many phylogenetic systematists have criticized the Biological Species Concept (BSC) because it distorts Biological Species Concept evolutionary history. While defences against this particular criticism have been attempted, I argue that Phylogenetic Species Concept these responses are unsuccessful. In addition, I argue that the source of this problem leads to previously Phylogenetic Trees unappreciated, and deeper, fatal objections. These objections to the BSC also straightforwardly apply to Taxonomy other species concepts that are not defined by genealogical history. What is missing from many previous discussions is the fact that the Tree of Life, which represents phylogenetic history, is independent of our choice of species concept. Some species concepts are consistent with species having unique positions on the Tree while others, including the BSC, are not. Since representing history is of primary importance in evolutionary biology, these problems lead to the conclusion that the BSC, along with many other species concepts, are unacceptable. If species are to be taxa used in phylogenetic inferences, we need a history- based species concept. Ó 2008 Elsevier Ltd. All rights reserved. When citing this paper, please use the full journal title Studies in History and Philosophy of Biological and Biomedical Sciences 1. -
Acanthopterygii, Bone, Eurypterygii, Osteology, Percomprpha
Research in Zoology 2014, 4(2): 29-42 DOI: 10.5923/j.zoology.20140402.01 Comparative Osteology of the Jaws in Representatives of the Eurypterygian Fishes Yazdan Keivany Department of Natural Resources (Fisheries Division), Isfahan University of Technology, Isfahan, 84156-83111, Iran Abstract The osteology of the jaws in representatives of 49 genera in 40 families of eurypterygian fishes, including: Aulopiformes, Myctophiformes, Lampridiformes, Polymixiiformes, Percopsiformes, Mugiliformes, Atheriniformes, Beloniformes, Cyprinodontiformes, Stephanoberyciformes, Beryciformes, Zeiformes, Gasterosteiformes, Synbranchiformes, Scorpaeniformes (including Dactylopteridae), and Perciformes (including Elassomatidae) were studied. Generally, in this group, the upper jaw consists of the premaxilla, maxilla, and supramaxilla. The lower jaw consists of the dentary, anguloarticular, retroarticular, and sesamoid articular. In higher taxa, the premaxilla bears ascending, articular, and postmaxillary processes. The maxilla usually bears a ventral and a dorsal articular process. The supramaxilla is present only in some taxa. The dentary is usually toothed and bears coronoid and posteroventral processes. The retroarticular is small and located at the posteroventral corner of the anguloarticular. Keywords Acanthopterygii, Bone, Eurypterygii, Osteology, Percomprpha following method for clearing and staining bone and 1. Introduction cartilage provided in reference [18]. A camera lucida attached to a Wild M5 dissecting stereomicroscope was used Despite the introduction of modern techniques such as to prepare the drawings. The bones in the first figure of each DNA sequencing and barcoding, osteology, due to its anatomical section are arbitrarily shaded and labeled and in reliability, still plays an important role in the systematic the others are shaded in a consistent manner (dark, medium, study of fishes and comprises a major percent of today’s and clear) to facilitate comparison among the taxa. -
Phylogenetic Trees and Cladograms Are Graphical Representations (Models) of Evolutionary History That Can Be Tested
AP Biology Lab/Cladograms and Phylogenetic Trees Name _______________________________ Relationship to the AP Biology Curriculum Framework Big Idea 1: The process of evolution drives the diversity and unity of life. Essential knowledge 1.B.2: Phylogenetic trees and cladograms are graphical representations (models) of evolutionary history that can be tested. Learning Objectives: LO 1.17 The student is able to pose scientific questions about a group of organisms whose relatedness is described by a phylogenetic tree or cladogram in order to (1) identify shared characteristics, (2) make inferences about the evolutionary history of the group, and (3) identify character data that could extend or improve the phylogenetic tree. LO 1.18 The student is able to evaluate evidence provided by a data set in conjunction with a phylogenetic tree or a simple cladogram to determine evolutionary history and speciation. LO 1.19 The student is able create a phylogenetic tree or simple cladogram that correctly represents evolutionary history and speciation from a provided data set. [Introduction] Cladistics is the study of evolutionary classification. Cladograms show evolutionary relationships among organisms. Comparative morphology investigates characteristics for homology and analogy to determine which organisms share a recent common ancestor. A cladogram will begin by grouping organisms based on a characteristics displayed by ALL the members of the group. Subsequently, the larger group will contain increasingly smaller groups that share the traits of the groups before them. However, they also exhibit distinct changes as the new species evolve. Further, molecular evidence from genes which rarely mutate can provide molecular clocks that tell us how long ago organisms diverged, unlocking the secrets of organisms that may have similar convergent morphology but do not share a recent common ancestor. -
Orangutan…Taxonomy…And…Nomenclature
«««« ORANGUTAN…TAXONOMY…AND…NOMENCLATURE« « Craig«D em itros« « The«taxonom y«of«the«orangutan«has«been«confusing«and«is«still«the«subject«of« m uch«debate.«Q uestions«at«the«specific«and«subspecific«level«are«still«being« investigated«(Courtenay«et«al.«1988).«The«follow ing«taxonom ic«inform ation«is« taken«prim arily«from «G roves,«1971.« « H IG H ER«LEVEL«TAXO N O M Y:« O rder:«Prim ates« Suborder:«A nthropoidea« Superfam ily:«H om inoidea« Fam ily:«Pongidae«(Includes«extant«genera«Pan,…Gorilla…and…Pongo).« « H ISTO RICA L«TAXO N O M Y«AT«TH E«G EN U S«A N D «G EN U S«SPECIES«LEVEL:«« G enus« Pongo«Lacepede,«1799.« O urangus«Zim m erm an,«1777«(N am e«invalidated).« « G enus«species«(Pongo…pygm aeus«H oppius,«1763).« Sim ia…pygm aeus«H oppius,«1763.««Type«locality«Sum atra.« Sim ia…satyrus«Linnaeus,«1766.« O urangus…outangus«Zim m erm an,«1777.« Pongo…borneo«Lacepede,«1799.««Type«locality«Borneo.« Sim ia…Agrais«Schreber,«1779.««Type«locality«Borneo.« Pongo…W urm bii«Tiedem ann,«1808.««Type«locality«Borneo.« Pongo…Abelii«Lesson,«1827.««Type«locality«Sum atra.« Sim ia…M orio«O w en,«1836.««Type«locality«Borneo.« Pithecus…bicolor«I.«G eoffroy,«1841.««Type«locality«Sum atra.« Sim ia…Gargantica«Pearson,«1841.««Type«locality«Sum atra.« Pithecus…brookei«Blyth,«1853.««Type«locality«Saraw ak.« Pithecus…ow enii«Blyth,«1853.««Type«locality«Saraw ak.« Pithecus…curtus«Blyth,«1855.««Type«locality«Saraw ak.« Satyrus…Knekias«M eyer,«1856.««Type«locality«Borneo.« Pithecus…W allichii«G ray,«1870.««Type«locality«Borneo.« Pithecus…sum atranus«Selenka,«1896.««Type«locality«Sum atra.« Pongo…pygm aeus«Rothschild,«1904.««First«use«of«this«com bination.« Ptihecus…w allacei«Elliot,«1913.««Type«locality«Borneo.« « CURRENT…TAXONOMY« « The«current«and«m ost«accepted«taxonom y«of«the«G enus«Pongo«includes«one« species«Pongo…pygm aeus«and«tw o«subspecies«P.p.…pygm aeus«(the«Bornean« subspecies)«and«P.p.…abelii«(the«Sum atran«subspecies)«(Bem m el«1968;«Jones« 1969;«G roves«1971;«Jacobshagen«1979;«Seuarez«et«al.«1979«and«G roves«1993).« 5« « . -
Studbook Gibbons 07
European Studbook Number 2 (data 31.12.2006) Edited by Pierre Moisson & Mélanie Berthet Northern White-cheeked Gibbon - Nomascus leucogenys Southern White-cheeked Gibbon - Nomascus siki Red-cheeked Gibbon - Nomascus gabriellae With Nutrition guidelines by David Gomis and a summary of Hylobatidae diseases 1 Nutrition guidelines for “Concolor” gibbons by David Gomis, DVM, with the collaboration of Sara De Michelis, PhD ; Thijs Flahou, DVM ; Lise Turner, DVM. These nutritional guidelines can also be used for other Hylobatidae species, except perhaps Siamangs. Part of this work was undertaken in 2005 by L. Turner for her veterinary thesis (Cf. 9- Ref. 84) and more recently in 2006-2007 with T. Flahou for the Mulhouse Zoo Dietary Manual publication. 1- Introduction: The present guidelines have been written in response to a lack of research and published informations on Nomascus subspecies diets. Meeting the nutritional needs of gibbons is essential to assure their survival and their reproduction in captivity. Present guidelines are not nutrition recommendations, but a first evaluation done in Mulhouse Zoo. Our Zoo has experience with keeping and breeding gibbons since 1961, and even if their nutrition doesn’t seem to represent a real difficulty compared to other non human primates, the diets have been improved over these 46 years. Therefore this work does not pretend to be exhaustive. Hopefully it would initiate some more nutrition research and coordination among zoos, with the objective of improving the database. Zoo animal nutrition is increasingly being recognised as a specialty: knowledge available is increasing too. The first aim of this study was to provide a database, useful for the development of diets for “Concolor” gibbons, as objectively as possible: with this purpose, we synthetized the few data we could collect on “Concolor” gibbons’ diets and nutrient requirements. -
An Introduction to Phylogenetic Analysis
This article reprinted from: Kosinski, R.J. 2006. An introduction to phylogenetic analysis. Pages 57-106, in Tested Studies for Laboratory Teaching, Volume 27 (M.A. O'Donnell, Editor). Proceedings of the 27th Workshop/Conference of the Association for Biology Laboratory Education (ABLE), 383 pages. Compilation copyright © 2006 by the Association for Biology Laboratory Education (ABLE) ISBN 1-890444-09-X All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording, or otherwise, without the prior written permission of the copyright owner. Use solely at one’s own institution with no intent for profit is excluded from the preceding copyright restriction, unless otherwise noted on the copyright notice of the individual chapter in this volume. Proper credit to this publication must be included in your laboratory outline for each use; a sample citation is given above. Upon obtaining permission or with the “sole use at one’s own institution” exclusion, ABLE strongly encourages individuals to use the exercises in this proceedings volume in their teaching program. Although the laboratory exercises in this proceedings volume have been tested and due consideration has been given to safety, individuals performing these exercises must assume all responsibilities for risk. The Association for Biology Laboratory Education (ABLE) disclaims any liability with regards to safety in connection with the use of the exercises in this volume. The focus of ABLE is to improve the undergraduate biology laboratory experience by promoting the development and dissemination of interesting, innovative, and reliable laboratory exercises. -
Understanding Cladistics
Understanding Cladistics Activity for Grades 5–8 Introduction Objective At the American Museum of Natural History, In this activity, students will explore cladistics and scientists use a method called cladistics to group create a cladogram of their own. animals. They look for unique features, such as a hole in the hip socket, that the animals share. Materials Animals with like features are grouped together. A • Understanding Cladistics chart, called a cladogram, shows these relationships. • A penny, nickel, dime, and quarter for each pair Using cladistics, scientists can reconstruct genealogi- of students cal relationships and can show how animals are • 6-8 dinosaurs pictures duplicated for each group, linked to one another through a long and complex downloadable from history of evolutionary changes. amnh.org/resources/rfl/pdf/dino_16_illustrations.pdf Procedure 1. Write lion, elephant, zebra, kangaroo, koala, buffalo, raccoon, and alligator. Ask students how the animals are related and what might be a good way of grouping them into sets and subsets. Discuss students responses. Tyrannosaurus rex Apatosaurus excelsus 2. Explain to students that scientists use a method extinct extinct called cladistics to determine evolutionary relation- ships among animals. They look for features that animals share, such as four limbs, hooves, or a hole in the hip socket. Animals with like features are grouped together. Scientists make a chart called a cladogram to show these relationships. 3. Tell students that they will examine the features of various coins to determine how they are related. Remind students that cladistics is used to determine relationships among organisms, and Theropoda Sauropoda Foot with three main At least 11 or more not necessarily objects. -
Phylogenetic Comparative Methods: a User's Guide for Paleontologists
Phylogenetic Comparative Methods: A User’s Guide for Paleontologists Laura C. Soul - Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA David F. Wright - Division of Paleontology, American Museum of Natural History, Central Park West at 79th Street, New York, New York 10024, USA and Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA Abstract. Recent advances in statistical approaches called Phylogenetic Comparative Methods (PCMs) have provided paleontologists with a powerful set of analytical tools for investigating evolutionary tempo and mode in fossil lineages. However, attempts to integrate PCMs with fossil data often present workers with practical challenges or unfamiliar literature. In this paper, we present guides to the theory behind, and application of, PCMs with fossil taxa. Based on an empirical dataset of Paleozoic crinoids, we present example analyses to illustrate common applications of PCMs to fossil data, including investigating patterns of correlated trait evolution, and macroevolutionary models of morphological change. We emphasize the importance of accounting for sources of uncertainty, and discuss how to evaluate model fit and adequacy. Finally, we discuss several promising methods for modelling heterogenous evolutionary dynamics with fossil phylogenies. Integrating phylogeny-based approaches with the fossil record provides a rigorous, quantitative perspective to understanding key patterns in the history of life. 1. Introduction A fundamental prediction of biological evolution is that a species will most commonly share many characteristics with lineages from which it has recently diverged, and fewer characteristics with lineages from which it diverged further in the past. This principle, which results from descent with modification, is one of the most basic in biology (Darwin 1859). -
Birding Madagascar 1-22 November 2018
Birding Madagascar 1-22 November 2018. Trip report compiled by Tomas Carlberg. 1 Front cover Daily log Red-capped Coua, sunbathing in Ankarafantsika National Park. Photo: Tomas Carlberg November 1st Some of us (TC, JN, and RN) flew Air France from Photos Arlanda, Stockholm at 06:00 to Paris, where we © All photos in this report: Tomas Carlberg. met OP (who flew from Gothenburg) and IF (flew For additional photos, see p. 30 ff. from Manchester). An 11 hrs flight took us to Antananarivo, where we landed just before Participants midnight. Once through after visa and passport control we met Zina at the airport. We stayed at IC Tomas Carlberg (Tour leader), Jonas Nordin, Hotel and fell asleep at 01:30. Sweden; Rolf Nordin, Sweden; Olof Persson, Sweden; Jesper Hornskov, Denmark; Eric November 2nd Schaumburg, Denmark; Hans Harrestrup Andersen, Woke up at 6, met the Danes (JH, ES, HW, and Denmark; Hans Wulffsberg, Denmark; Ian Fryer, UK HHA), and had breakfast. Changed c. 400 Euro each Serge “Zina” Raheritsiferana (organizer and driver), and got 1 540 000 ariary… Departure at 7:30 Fidson “Fidy” Albert Alberto (guide), and Lala. heading north towards Ankarafantsika NP. Saw a male Malagasy Harrier c. 16 km south of Ankazobe Correspondence (-18.45915, 47.160156), so stopped for birding [email protected] (Tomas Carlberg) there 9:45-10:05. Stop at 11:40 to buy sandwiches for lunch. Lunch with birding 12:55-13:15. Long Tour organizers transport today… Stopped for birding at bridge Serge “Zina” Raheritsiferana (Zina-Go Travel), over Betsiboka River 16:30-17:30; highlight here Stig Holmstedt. -
<I>Poecilimon Ornatus</I>
e-ISSN 1734-9168 Folia Biologica (Kraków), vol. 68 (2020), No 1 http://www.isez.pan.krakow.pl/en/folia-biologica.html https://doi.org/10.3409/fb_68-1.02 The Relationships within the Poecilimon ornatus Group (Orthoptera: Phaneropterinae) Based on the Cytochrome C Oxidase I Gene Maciej KOCIÑSKI Accepted January 21, 2020 Published online March 19, 2020 Issue online March 31, 2020 Original article KOCIÑSKI M. 2020. The relationships within the Poecilimon ornatus group (Orthoptera: Phaneropterinae) based on the cytochrome c oxidase I gene. Folia Biologica (Kraków) 68: 7-13. The genus Poecilimon includes 142 species divided into 18 groups. It is distributed throughout the Palaearctic area. One of the groups is the Poecilimon ornatus group, in which many closely related taxa have been identified (13 species). Although several searches have been carried out, the phylogeny and systematics of P. ornatus are only partly resolved. The most dispersed taxon within the group is Poecilimon affinis, having numerous subspecies. Species from the P. ornatus group have been described mainly based on morphological characteristics, as well as type of song. The aim of this study is to clarify the relationships between species from the P. ornatus group by comparing partial sequences of the cytochrome c oxidase subunit I (COI) mitochondrial gene. The analyses were carried out on 84 specimens from 23 taxa. Bush-crickets from the P. ornatus group are monophyletic, in contrast to taxa within the P. affinis complex. Not all of the previously described divisions of the group based on morphology, bioacoustics, distribution, and ecology were confirmed. Key words: bush-crickets, phylogeny, polymorphism, mitochondrial DNA. -
Acta Ichthyologica Et Piscatoria
ACTA ICHTHYOLOGICA ET .PISCATORIA Vol. X Fasc. 1 Szczecin 1980 T. VENKATESWARLU, George VERGHESE Physiography OCCURRENCE OF THEBAT-FISH,PEGASUS DR ACONISL. (PEGASIFORMES:PEGASfilAE) IN LAKSHADWEEP (INUlA) WYSTF;POWAME'flEGAZAPEGASUS DRACONIS L. (PEGASIFORMES_,PEGASIDAE) W LAKSHADWEEP (liNDIE) Zoological Survey of India, Madras Union Territoryof Lakshadweep, Kavru:etti In India Pegasus draconis L. had been described just one time by Day (1889) - it came from Port Blair of South Andamans archipelago. Presently the authors report second case of its catch on the reefs surrounding Kavaretti Island (Laccadive Islands), Day (1889) recorded Pegasus draconis Linnaeus from the Andamans: Johnstone (1904) and Munro (1955) recorded Pegasus (Parapegasus) natans (Linnaeus) from the Pearl Banks of Ceylon; and Munro (1955) recorded Pegasus (Parapegasus) volafl! (Linnaeus) and Pegasus draconis Linnaeus from Ceylon. According to Herre (1953) Pegasus (Parapegasus) natans (Linnaeus) and Pegasus (Parapegasus) volans (Linnaeus) ar� synonymous with Pegasus volitans Linnaeus, Smith (1965) recognised only Pegasus draconicus Linnaeus and Pegasus natans Linnaeus based on the number of rings, under the family Pegasidae. The family Pegasidae is Indo,�Pacific in its distribution, extending fromEast Africato Japan and Australia. Pegasus volitans Linnaeus .was reported from Indian waters by Jones and Pantulu (1958), Krishnamurthy (1961), Jayadev Babu (1966) and Venkateswarlu (1976), but there is no recorded of Pegasus draconis Linnaeus from Indian waters after Day (1889) 56 To Venkateswarlu, George Verghese Pegasus draconis L from Lakshadweep Photograph l. dorsal view Photograph 2. ventral view Occurrence ... 57 who based his description on a single specimen procured from Port Blair, Andamans. So this is a valuable record of a fully grown specimen from Lakshadweep Islands. -
Ent14 2 101 111 Zhantiev.Pmd
Russian Entomol. J. 14(2): 101111 © RUSSIAN ENTOMOLOGICAL JOURNAL, 2005 Acoustic signals of the bushcrickets of tribe Barbitistini (Orthoptera: Tettigoniidae: Phaneropterinae) from eastern Europe and Caucasus. I. Poecilimon Fisch., Isoimon B.-Bienko Àêóñòè÷åñêèå ñèãíàëû êóçíå÷èêîâ òðèáû Barbitistini (Orthoptera: Tettigoniidae: Phaneropterinae) âîñòî÷íîé Åâðîïû è Êàâêàçà. I. Poecilimon Fisch., Isoimon B.-Bienko R.D. Zhantiev, O.S. Korsunovskaya Ð.Ä. Æàíòèåâ, Î.Ñ. Êîðñóíîâñêàÿ Department of Entomology, Moscow Lomonosov State University, Moscow 119992, Vorobiovy Gory, Russia Êàôåäðà ýíòîìîëîãèè, Ìîñêîâñêèé ãîñóäàðñòâåííûé óíèâåðñèòåò èì. Ì.Â.Ëîìîíîñîâà, Ìîñêâà 119992, Âîðîáü¸âû ãîðû, Ðîññèÿ KEY WORDS. Tettigoniidae, Barbitistini, Poecilimon, Isoimon, sound signals. ÊËÞ×ÅÂÛÅ ÑËÎÂÀ. Tettigoniidae, Barbitistini, Poecilimon, Isoimon, çâóêîâûå ñèãíàëû. ABSTRACT. Temporal pattern and frequency spec- Zhantiev & Korsunovskaya, 1986, 1990]. Songs of two tra of the songs and stridulatory files of 15 species sibling genera Poecilimon and Isoimon from the tribe belonging to genera of Poecilimon and Isoimon of phan- Barbitistini are the subject of our study presented here. eropterine bushcrickets of the tribe Barbitistini from eastern Europe and Caucasus are given. Acoustic signals Material and methods of eastern European and Caucasian species with other European species of Poecilimon are compared. Species Tape-recordings of the songs of captured insects in status of P. ukrainicus and P. tereckensis are reinstated. the laboratory were made with use 1/4 inch Bruel & Kjaer 4135 or MK 301 RFT microphones with linear ÐÅÇÞÌÅ. Ïðèâîäÿòñÿ äàííûå îá àìïëèòóäíî- characteristics in the range 0.02100 kHz, microphone âðåìåííûõ è ÷àñòîòíûõ õàðàêòåðèñòèêàõ çâóêîâûõ ampliphier 2604 Bruel & Kjaer or 00 017 RFT and ñèãíàëîâ è ñòðèäóëÿöèîííûõ æèëêàõ 15 âèäîâ ëèñ- modified tape recorder Yupiter-202 Stereo with linear òîâûõ êóçíå÷èêîâ òðèáû Barbitistini èç ðîäîâ Poecil- characteristic in the range 0.06370 kHz.